<86>Apr 14 03:37:19 userdel[85027]: delete user 'rooter' <86>Apr 14 03:37:19 userdel[85027]: removed group 'rooter' owned by 'rooter' <86>Apr 14 03:37:19 userdel[85027]: removed shadow group 'rooter' owned by 'rooter' <86>Apr 14 03:37:19 groupadd[85040]: group added to /etc/group: name=rooter, GID=543 <86>Apr 14 03:37:19 groupadd[85040]: group added to /etc/gshadow: name=rooter <86>Apr 14 03:37:19 groupadd[85040]: new group: name=rooter, GID=543 <86>Apr 14 03:37:19 useradd[85046]: new user: name=rooter, UID=543, GID=543, home=/root, shell=/bin/bash <86>Apr 14 03:37:19 userdel[85056]: delete user 'builder' <86>Apr 14 03:37:19 userdel[85056]: removed group 'builder' owned by 'builder' <86>Apr 14 03:37:19 userdel[85056]: removed shadow group 'builder' owned by 'builder' <86>Apr 14 03:37:19 groupadd[85065]: group added to /etc/group: name=builder, GID=544 <86>Apr 14 03:37:19 groupadd[85065]: group added to /etc/gshadow: name=builder <86>Apr 14 03:37:19 groupadd[85065]: new group: name=builder, GID=544 <86>Apr 14 03:37:19 useradd[85069]: new user: name=builder, UID=544, GID=544, home=/usr/src, shell=/bin/bash <13>Apr 14 03:37:37 rpmi: libexpat-2.2.4-alt0.M80P.1 1503871120 installed <13>Apr 14 03:37:37 rpmi: xorg-xproto-devel-7.0.28-alt1 1448272470 installed <13>Apr 14 03:37:37 rpmi: libjpeg-2:1.3.1-alt0.1 1388074033 installed <13>Apr 14 03:37:37 rpmi: libpng15-1.5.28-alt1 1484572014 installed <13>Apr 14 03:37:37 rpmi: libtiff5-4.0.3-alt1 1348347498 installed <13>Apr 14 03:37:37 rpmi: zlib-devel-1.2.8-alt1 1371079009 installed <13>Apr 14 03:37:37 rpmi: libwayland-server-1.14.0-alt0.M80P.1 1502720500 installed <13>Apr 14 03:37:37 rpmi: libXau-1.0.8-alt1 1369565807 installed <13>Apr 14 03:37:37 rpmi: libidn2-2.0.4-alt3.M80P.1 1520307194 installed <13>Apr 14 03:37:37 rpmi: ca-certificates-2016.02.25-alt1 1462368370 installed <13>Apr 14 03:37:37 rpmi: libcrypto10-1.0.2n-alt0.M80P.1 1512766129 installed <13>Apr 14 03:37:37 rpmi: libXau-devel-1.0.8-alt1 1369565807 installed <13>Apr 14 03:37:37 rpmi: libjasper-1.900.1-alt3 1391718482 installed <13>Apr 14 03:37:37 rpmi: libgtk+2-locales-2.24.31-alt1 1473461664 installed <13>Apr 14 03:37:37 rpmi: liborc-0.4.27-alt1.M80P.1 1503911715 installed <13>Apr 14 03:37:37 rpmi: libdatrie-0.2.8-alt1_5 1410185969 installed <13>Apr 14 03:37:37 rpmi: libthai-0.1.24-alt1_1 1459282110 installed <13>Apr 14 03:37:37 rpmi: libpng12-1.2.50-alt2 1347753407 installed <13>Apr 14 03:37:37 rpmi: libpng12-devel-1.2.50-alt2 1347753407 installed <13>Apr 14 03:37:37 rpmi: libpixman-3:0.32.8-alt1 1447610691 installed <13>Apr 14 03:37:37 rpmi: libatk-locales-2.24.0-alt0.M80P.1 1504535386 installed <13>Apr 14 03:37:37 rpmi: libatk-2.24.0-alt0.M80P.1 1504535253 installed <13>Apr 14 03:37:37 rpmi: xorg-renderproto-devel-0.11.1-alt3 1303465056 installed <13>Apr 14 03:37:37 rpmi: xorg-xextproto-devel-2:7.3.0-alt1 1389258977 installed <13>Apr 14 03:37:37 rpmi: libwrap-1:7.6-alt11 1297041305 installed <13>Apr 14 03:37:37 rpmi: libgsm-1.0.13-alt8 1365910842 installed <13>Apr 14 03:37:37 rpmi: libsndfile-1.0.28-alt1.M80P.1 p8.212938.100 1536756416 installed <13>Apr 14 03:37:37 rpmi: libjson-c-0.12-alt1 1401212997 installed <13>Apr 14 03:37:37 rpmi: liblz4-1:1.7.5-alt1 1488766699 installed <13>Apr 14 03:37:37 rpmi: libgpg-error-1.31-alt1.M80P.1 1529024730 installed <13>Apr 14 03:37:38 rpmi: libgcrypt20-1.8.3-alt4 p8+219793.200.6.1 1551112986 installed <13>Apr 14 03:37:38 rpmi: libsystemd-1:237-alt2.M80P.6 p8+221965.100.2.1 1550786217 installed <13>Apr 14 03:37:38 rpmi: libdbus-1.10.24-alt4.M80P.1 1518773282 installed <13>Apr 14 03:37:38 rpmi: libavahi-0.6.31-alt7.M80P.1 1526318593 installed <13>Apr 14 03:37:38 rpmi: libasyncns-0.8-alt2.qa1 1365949819 installed <13>Apr 14 03:37:38 rpmi: libalsa-1:1.1.0-alt1.1.1 1454429213 installed <13>Apr 14 03:37:38 rpmi: libICE-1.0.9-alt1 1409902719 installed <13>Apr 14 03:37:38 rpmi: libSM-1.2.2-alt1 1391072686 installed <13>Apr 14 03:37:38 rpmi: xorg-kbproto-devel-1.0.6-alt1 1332531883 installed <13>Apr 14 03:37:38 rpmi: libwayland-client-1.14.0-alt0.M80P.1 1502720500 installed <13>Apr 14 03:37:38 rpmi: libxshmfence-1.2-alt1 1420972191 installed <13>Apr 14 03:37:38 rpmi: libpciaccess-1:0.13.4-alt1 1431681688 installed <13>Apr 14 03:37:38 rpmi: libdrm-1:2.4.89-alt1.M80P.1 1516609380 installed <13>Apr 14 03:37:38 rpmi: libgbm-4:18.0.5-alt1.M80P.1 p8+226404.100.1.1 1554206332 installed <13>Apr 14 03:37:38 rpmi: libX11-locales-3:1.6.3-alt1 1431956885 installed <13>Apr 14 03:37:38 rpmi: libXdmcp-1.1.1-alt1 1334617699 installed <13>Apr 14 03:37:38 rpmi: libxcb-1.12-alt2 p8.218219.300 1545313310 installed <13>Apr 14 03:37:38 rpmi: libX11-3:1.6.3-alt1 1431956911 installed <13>Apr 14 03:37:38 rpmi: libXext-1.3.3-alt1 1409902932 installed <13>Apr 14 03:37:38 rpmi: libXrender-0.9.8-alt1 1371312110 installed <13>Apr 14 03:37:38 rpmi: libXfixes-5.0.1-alt1 1369809606 installed <13>Apr 14 03:37:38 rpmi: libXrandr-1.5.0-alt1 1431936188 installed <13>Apr 14 03:37:38 rpmi: libXinerama-1.1.3-alt1 1369984571 installed <13>Apr 14 03:37:38 rpmi: libXdamage-1.1.3-alt4 1297162596 installed <13>Apr 14 03:37:40 rpmi: libxcb-devel-1.12-alt2 p8.218219.300 1545313310 installed <13>Apr 14 03:37:40 rpmi: libX11-devel-3:1.6.3-alt1 1431956911 installed <13>Apr 14 03:37:40 rpmi: libXext-devel-1.3.3-alt1 1409902932 installed <13>Apr 14 03:37:40 rpmi: libXrender-devel-0.9.8-alt1 1371312110 installed <13>Apr 14 03:37:40 rpmi: libXcursor-1.1.15-alt1.M80P.1 1512373713 installed <13>Apr 14 03:37:40 rpmi: libXxf86vm-1.1.3-alt1 1369984824 installed <13>Apr 14 03:37:40 rpmi: libGL-4:18.0.5-alt1.M80P.1 p8+226404.100.1.1 1554206332 installed <13>Apr 14 03:37:40 rpmi: libEGL-4:18.0.5-alt1.M80P.1 p8+226404.100.1.1 1554206332 installed <13>Apr 14 03:37:40 rpmi: libEGL-devel-4:18.0.5-alt1.M80P.1 p8+226404.100.1.1 1554206332 installed <13>Apr 14 03:37:40 rpmi: libGL-devel-4:18.0.5-alt1.M80P.1 p8+226404.100.1.1 1554206332 installed <13>Apr 14 03:37:40 rpmi: libXi-1.7.9-alt1.M80P.1 1515766146 installed <13>Apr 14 03:37:40 rpmi: libXcomposite-0.4.3-alt3 1297306939 installed <13>Apr 14 03:37:40 rpmi: libpulseaudio-9.0-alt2 1469793979 installed <13>Apr 14 03:37:40 rpmi: libSDL-1.2.14-alt6.M80P.1 1483818219 installed <13>Apr 14 03:37:40 rpmi: icon-theme-hicolor-0.17-alt1 1505715846 installed <13>Apr 14 03:37:40 rpmi: libgdk-pixbuf-locales-2.36.11-alt0.M80P.1 1507198237 installed <13>Apr 14 03:37:40 rpmi: rpm-build-xdg-0.2-alt1 1250461503 installed <13>Apr 14 03:37:40 rpmi: shared-mime-info-1.9-alt0.M80P.1 1506021412 installed <13>Apr 14 03:37:40 rpmi: gsettings-desktop-schemas-data-3.24.1-alt0.M80P.1 1504768054 installed <13>Apr 14 03:37:40 rpmi: gcc-c++-common-1.4.20-alt1 1432315196 installed <13>Apr 14 03:37:41 rpmi: libstdc++5-devel-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553688800 installed <13>Apr 14 03:37:41 rpmi: libgraphite2-1.3.10-alt0.M80P.1 1496411360 installed <13>Apr 14 03:37:41 rpmi: libjsoncpp1-1.7.2-alt3.M80P.1 1518818590 installed <13>Apr 14 03:37:41 rpmi: publicsuffix-list-dafsa-20190329-alt1 p8+226349.100.1.1 1554128046 installed <13>Apr 14 03:37:41 rpmi: libpsl-0.18.0-alt0.M80P.1 1502785107 installed <13>Apr 14 03:37:41 rpmi: libnghttp2-1.8.0-alt1 1456818805 installed <13>Apr 14 03:37:41 rpmi: libbrotlicommon0-1.0.4-alt0.M80P.1 1528205024 installed <13>Apr 14 03:37:41 rpmi: libbrotlidec0-1.0.4-alt0.M80P.1 1528205024 installed <13>Apr 14 03:37:41 rpmi: libnettle6-3.4.1-alt1 p8.217493.100 1544204548 installed <13>Apr 14 03:37:41 rpmi: liblzo2-2.08-alt1 1405435908 installed <13>Apr 14 03:37:41 rpmi: libarchive13-3.2.1-alt1 1467155787 installed <13>Apr 14 03:37:41 rpmi: rpm-macros-cmake-3.6.3-alt0.1.M80P.1 1505734848 installed <13>Apr 14 03:37:41 rpmi: cmake-modules-3.6.3-alt0.1.M80P.1 1505734959 installed <13>Apr 14 03:37:41 rpmi: libtinfo-devel-5.9-alt8 1456756459 installed <13>Apr 14 03:37:42 rpmi: libncurses-devel-5.9-alt8 1456756459 installed <13>Apr 14 03:37:42 rpmi: python-modules-curses-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:37:42 rpmi: libverto-0.2.6-alt1_6 1455633234 installed <13>Apr 14 03:37:42 rpmi: libkeyutils-1.5.10-alt0.M80P.2 p8+216694.100.6.1 1547827915 installed <13>Apr 14 03:37:42 rpmi: libcom_err-1.42.13-alt2 1449075846 installed <13>Apr 14 03:37:42 rpmi: libgdbm-1.8.3-alt10 1454943313 installed <13>Apr 14 03:37:43 rpmi: gcc5-c++-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553688800 installed <13>Apr 14 03:37:43 rpmi: xml-utils-1:2.9.4.0.12.e905-alt1 1488560683 installed <13>Apr 14 03:37:43 rpmi: libxml2-devel-1:2.9.4.0.12.e905-alt1 1488560683 installed <13>Apr 14 03:37:43 rpmi: eigen2-2.0.17-alt2.M80P.1 1492110238 installed <13>Apr 14 03:37:43 rpmi: libgio-2.52.3-alt0.M80P.1 1504533271 installed <13>Apr 14 03:37:43 rpmi: libssl10-1.0.2n-alt0.M80P.1 1512766129 installed <86>Apr 14 03:37:43 groupadd[129321]: group added to /etc/group: name=_keytab, GID=499 <86>Apr 14 03:37:43 groupadd[129321]: group added to /etc/gshadow: name=_keytab <86>Apr 14 03:37:43 groupadd[129321]: new group: name=_keytab, GID=499 <13>Apr 14 03:37:43 rpmi: libkrb5-1.14.6-alt1.M80P.1 1525355673 installed <13>Apr 14 03:37:43 rpmi: libgdk-pixbuf-2.36.11-alt0.M80P.1 1507198160 installed <13>Apr 14 03:37:43 rpmi: libgstreamer1.0-1.12.3-alt0.M80P.1 1505901068 installed <13>Apr 14 03:37:43 rpmi: libharfbuzz-1.6.3-alt0.M80P.1 1509918814 installed <13>Apr 14 03:37:43 rpmi: libfreetype-2.8-alt0.M80P.3 1505462817 installed <13>Apr 14 03:37:43 rpmi: fontconfig-2.12.6-alt1.M80P.1 1506008910 installed Updating fonts cache: <29>Apr 14 03:37:44 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Apr 14 03:37:44 rpmi: libcairo-1:1.14.4-alt1 1447005495 installed <13>Apr 14 03:37:45 rpmi: libfreetype-devel-2.8-alt0.M80P.3 1505462817 installed <13>Apr 14 03:37:45 rpmi: fontconfig-devel-2.12.6-alt1.M80P.1 1506008910 installed <13>Apr 14 03:37:45 rpmi: libXft-2.3.2-alt1 1409902650 installed <13>Apr 14 03:37:45 rpmi: libpango-1.40.14-alt0.M80P.1 1510824230 installed <13>Apr 14 03:37:45 rpmi: libgst-plugins1.0-1.12.3-alt0.M80P.1 1505901518 installed <13>Apr 14 03:37:45 rpmi: gtk-update-icon-cache-2.24.31-alt1 1473461609 installed <86>Apr 14 03:37:45 groupadd[6874]: group added to /etc/group: name=sasl, GID=498 <86>Apr 14 03:37:45 groupadd[6874]: group added to /etc/gshadow: name=sasl <86>Apr 14 03:37:45 groupadd[6874]: new group: name=sasl, GID=498 <13>Apr 14 03:37:45 rpmi: libsasl2-3-2.1.26-alt7 1479477445 installed <13>Apr 14 03:37:45 rpmi: libldap-2.4.45-alt1.M80P.1 1513980376 installed <13>Apr 14 03:37:45 rpmi: libcurl-7.64.0-alt1 p8+220788.100.1.1 1549495393 installed <13>Apr 14 03:37:45 rpmi: libcups-2.1.0-alt2.M80P.4 p8+223280.100.1.1 1551372192 installed <13>Apr 14 03:37:46 rpmi: libgtk+2-2.24.31-alt1 1473461609 installed <13>Apr 14 03:37:46 rpmi: gsettings-desktop-schemas-3.24.1-alt0.M80P.1 1504768052 installed <13>Apr 14 03:37:46 rpmi: cmake-3.6.3-alt0.1.M80P.1 1505734848 installed <13>Apr 14 03:37:46 rpmi: libcairo-devel-1:1.14.4-alt1 1447005495 installed <13>Apr 14 03:37:46 rpmi: wxGTK-2:2.8.12-alt1.svn20131012.3.M80P.1 1491241128 installed <13>Apr 14 03:37:46 rpmi: python-modules-compiler-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:37:47 rpmi: libwxGTK-2:2.8.12-alt1.svn20131012.3.M80P.1 1491241128 installed <13>Apr 14 03:37:47 rpmi: libwxGTK-devel-2:2.8.12-alt1.svn20131012.3.M80P.1 1491241128 installed <13>Apr 14 03:37:47 rpmi: python-modules-email-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:37:47 rpmi: python-modules-unittest-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:37:47 rpmi: python-modules-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:37:47 rpmi: python-modules-encodings-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:37:47 rpmi: python-modules-xml-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:37:47 rpmi: python-modules-hotshot-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:37:47 rpmi: python-modules-bsddb-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:37:47 rpmi: python-modules-ctypes-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:37:47 rpmi: python-modules-multiprocessing-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:37:47 rpmi: python-modules-logging-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:37:47 rpmi: python-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:37:47 rpmi: python-dev-2.7.11-alt6.M80P.1 1527682470 installed Installing openbabel-2.3.2-alt2.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.85713 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf openbabel-2.3.2 + echo 'Source #0 (openbabel-2.3.2.tar.gz):' Source #0 (openbabel-2.3.2.tar.gz): + /bin/gzip -dc /usr/src/RPM/SOURCES/openbabel-2.3.2.tar.gz + /bin/tar -xf - + cd openbabel-2.3.2 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #1 (alt-gcc5.patch):' Patch #1 (alt-gcc5.patch): + /usr/bin/patch -p1 patching file include/openbabel/shared_ptr.h + echo PYTHON_BINDINGS:BOOL=ON + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.85713 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd openbabel-2.3.2 + cmake . -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH:BOOL=yes '-DCMAKE_C_FLAGS:STRING=-pipe -Wall -g -O2 -I/usr/include/eigen2' '-DCMAKE_CXX_FLAGS:STRING=-pipe -Wall -g -O2 -I/usr/include/eigen2' '-DCMAKE_Fortran_FLAGS:STRING=-pipe -Wall -g -O2 -I/usr/include/eigen2' -DCMAKE_INSTALL_PREFIX=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DLIB_DESTINATION=lib64 -- The C compiler identification is GNU 5.3.1 -- The CXX compiler identification is GNU 5.3.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Using included inchi library. -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.9.4") -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.8") -- Found wxWidgets: -L/usr/lib64;-pthread;;;-L/usr/lib64;;;-lwx_baseu-2.8;-lwx_gtk2u_core-2.8;-lwx_gtk2u_adv-2.8 (found version "2.8.12") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") -- Found Eigen2: /usr/include/eigen2 (Required is at least version "2.0.0") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.25") -- Checking for module 'cairo' -- Found cairo, version 1.14.4 Package gobject-2.0 was not found in the pkg-config search path. Perhaps you should add the directory containing `gobject-2.0.pc' to the PKG_CONFIG_PATH environment variable Package 'gobject-2.0', required by 'cairo', not found Package gobject-2.0 was not found in the pkg-config search path. Perhaps you should add the directory containing `gobject-2.0.pc' to the PKG_CONFIG_PATH environment variable Package 'gobject-2.0', required by 'cairo', not found Package gobject-2.0 was not found in the pkg-config search path. Perhaps you should add the directory containing `gobject-2.0.pc' to the PKG_CONFIG_PATH environment variable Package 'gobject-2.0', required by 'cairo', not found -- Found Cairo: /usr/lib64/libcairo.so -- Cairo found. PNG output will be supported. -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /usr/src/RPM/BUILD/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:14 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /usr/src/RPM/BUILD/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:31 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /usr/src/RPM/BUILD/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:25 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /usr/src/RPM/BUILD/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:39 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python (found version "2.7.11") -- Found PythonLibs: /usr/lib64/libpython2.7.so (found version "2.7.11") -- Python bindings will be compiled -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS CMAKE_SKIP_INSTALL_RPATH LIB_DESTINATION SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /usr/src/RPM/BUILD/openbabel-2.3.2 + '[' -n '' ']' + NPROCS=8 + make -j8 VERBOSE=1 make: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' /usr/bin/cmake -H/usr/src/RPM/BUILD/openbabel-2.3.2 -B/usr/src/RPM/BUILD/openbabel-2.3.2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /usr/src/RPM/BUILD/openbabel-2.3.2/CMakeFiles /usr/src/RPM/BUILD/openbabel-2.3.2/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake --color= make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src /usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/openbabel.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/CMakeFiles/inchi.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/CMakeFiles/inchi.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/openbabel.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/openbabel.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/openbabel.dir/depend.internal". Scanning dependencies of target inchi make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichi_bns.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichi_io.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_io.c [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichicans.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicans.c [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.o [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichicano.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicano.c [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichican2.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichilnct.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichilnct.c [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiisot.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiisot.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_io.c: In function 'inchi_fgetsLfTab': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_io.c:722:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while ( p = inchi_fgetsTab( szSkip, sizeof(szSkip)-1, f ) ) { ^ Scanning dependencies of target openbabel make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c: In function 'CellGetMinNode': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:1106:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( uCurAuxRank == uInpAuxRank && nCurAtNumb > nInpAtNumb || uCurAuxRank > uInpAuxRank ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c: In function 'CtPartFill': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:1249:27: warning: variable 'rj_prev' set but not used [-Wunused-but-set-variable] AT_RANK r, rj, nn, j, rj_prev; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c: In function 'CtPartCompare': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:1611:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = -(startCt1 - startCt2) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:1644:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = -(endCt1 - endCt2) ) { /* negative sign reproduces results for NSC=28393 */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:1705:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = -(startAt1 - startAt2) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:1708:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = -(endAt1 - endAt2) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:1448:39: warning: variable 'len_iso_sort_key' set but not used [-Wunused-but-set-variable] int diff, i, k1, k2, lenNumH, len_iso_sort_key, /*mid_iso_sort_key,*/ midAt; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:1448:26: warning: variable 'k2' set but not used [-Wunused-but-set-variable] int diff, i, k1, k2, lenNumH, len_iso_sort_key, /*mid_iso_sort_key,*/ midAt; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:1448:22: warning: variable 'k1' set but not used [-Wunused-but-set-variable] int diff, i, k1, k2, lenNumH, len_iso_sort_key, /*mid_iso_sort_key,*/ midAt; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c: In function 'CtFullCompare': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:1885:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = -(endCt1 - endCt2) ) { /* negative sign reproduces results for NSC=28393 */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:1914:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = -(lenNumH1 - lenNumH2) ) { /* negative sign reproduces results for NSC=28393 */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:1967:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = -(len_iso_sort_key1 - len_iso_sort_key2) ) { /* negative sign reproduces results for NSC=28393 */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:1838:51: warning: variable 'len_iso_sort_key' set but not used [-Wunused-but-set-variable] int len_iso_sort_key1, len_iso_sort_key2, len_iso_sort_key /*, mid_iso_sort_key*/; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:1837:50: warning: variable 'lenNumH' set but not used [-Wunused-but-set-variable] int diff, i, k1, k2, lenNumH1, lenNumH2, lenNumH, maxVert /* min num atoms */; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:1836:13: warning: variable 'midAt' set but not used [-Wunused-but-set-variable] midAt /* end of atoms only */; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c: In function 'CtPartCopy': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:2078:23: warning: variable 'endAt1' set but not used [-Wunused-but-set-variable] int startAt1, endAt1, startAt2, endAt2; /*endCt,*/ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:2076:33: warning: variable 'endCt1' set but not used [-Wunused-but-set-variable] int startCt1, startCt2, endCt1, endCt2; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c: In function 'CanonGraph': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:2939:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] L_rho_fix_diff == L_rho_fix_prev && kLeast_rho_fix[L_rho_fix_diff].i < I_rho_fix_prev ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:2978:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] L_rho_diff == L_rho_fix_prev && kLeast_rho[L_rho_diff].i < I_rho_fix_prev ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:2963:17: warning: variable 'qzb_rho_temp' set but not used [-Wunused-but-set-variable] int qzb_rho_temp = 0; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:2997:38: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( qzb_rho > 0 || !qzb_rho && !bRhoIsDiscrete ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:3069:30: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !lab || qzb_rho < 0 && ( !pzb_rho_fix || qzb_rho_fix > 0 ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:3071:22: warning: the address of 'kLeast_rho_fix' will always evaluate as 'true' [-Waddress] if ( pzb_rho_fix && kLeast_rho_fix && 0 == qzb_rho_fix ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:3073:14: warning: the address of 'kLeast_rho_fix' will always evaluate as 'true' [-Waddress] if ( kLeast_rho_fix ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:3111:10: warning: the address of 'kLeast_rho' will always evaluate as 'true' [-Waddress] if ( kLeast_rho ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:3201:21: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( UserAction && USER_ACTION_QUIT == (*UserAction)() || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c: In function 'GetBaseCanonRanking': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:3831:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] t_group_info->t_group && t_group_info->num_t_groups > 0 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:3835:67: warning: suggest parentheses around '&&' within '||' [-Wparentheses] t_group_info->nNumIsotopicEndpoints > 1 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:4378:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( s[iBase].num_isotopic_atoms && !s[iBase].bIgnoreIsotopic || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:4380:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bUseIsoAuxBase[iBase] && !bTautIgnoreIsotopic ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:4395:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses] maxlen_iso_exchg_atnos && !iso_exchg_atnos ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:4405:61: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( at_base[i].endpoint || iso_exchg_atnos && (at_base[i].cFlags & AT_FLAG_ISO_H_POINT) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:4448:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( iso_sort_key = t_group_info->t_group[m].iWeight ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:4695:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses] iflag = s[iBase].num_isotopic_atoms && !s[iBase].bIgnoreIsotopic || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:4699:60: warning: suggest parentheses around '&&' within '||' [-Wparentheses] iflag = iflag || s[iOther].num_isotopic_atoms && !s[iOther].bIgnoreIsotopic; ^ make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'EliminatePlusMinusChargeAmbiguity': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:734:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] ( v0 >= num_atoms && ( pBNS->vert[v0].type & BNS_VERT_TYPE_C_GROUP ) || ^ [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/alias.o /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicans.c: In function 'UnmarkNonStereo': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicans.c:274:44: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( bIsotopic && (at[jc].num_iso_H[0] > 1 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicans.c: In function 'FillSingleStereoDescriptors': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicans.c:389:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( bAllene > 0 && !num_allene || bAllene == 0 && num_allene ) { ^ cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/alias.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/alias.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicans.c: In function 'MarkKnownEqualStereoBondParities': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicans.c:777:70: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( nAtomRank2 < nAtomRank1 || nAtomRank2 == nAtomRank1 && i1 < i2 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicans.c: In function 'PathsHaveIdenticalKnownParities': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicans.c:1038:38: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[cur1].stereo_atom_parity && !PARITY_WELL_DEF (at[cur1].stereo_atom_parity) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'SubtractOrChangeAtHChargeBNS': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:928:21: warning: variable 'type' set but not used [-Wunused-but-set-variable] int mask, type; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'MarkAtomsAtTautGroups': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:1191:26: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( 0 <= v1 && v1 == nEnd1 || v1 == nEnd2 && 0 <= v2 && v2 < num_atoms ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:1198:26: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( 0 <= v2 && v2 == nEnd1 || v2 == nEnd2 && 0 <= v1 && v1 < num_atoms ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:1217:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( cDelta[j] > 0 && cDelta[i] > 0 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:1248:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( cDelta[j] > 0 && cDelta[i] > 0 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:1121:44: warning: variable 'ineigh2' set but not used [-Wunused-but-set-variable] int pass, i, j, v1, v2, ineigh1, ineigh2, vLast, vFirst, n, delta, err = 0; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'RestoreBnStructFlow': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:1272:41: warning: variable 'ineigh2' set but not used [-Wunused-but-set-variable] int pass, i, v1, v2, ineigh1, ineigh2, vLast, n, delta, ret, err = 0; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'BnsTestAndMarkAltBonds': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicano.c: In function 'InchiTimeMsecDiff': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicano.c:179:38: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( TickEnd->clockTime >= 0 && TickStart->clockTime >= 0 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicano.c: In function 'bInchiTimeIsOver': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:1524:16: warning: variable 'bSuccess' set but not used [-Wunused-but-set-variable] int iedge, bSuccess, bError, nDots, nChanges, bTestForNonStereoBond; ^ In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichilnct.c:69:0: /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h: In function 'll_INChIToInchi_Atom': /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:408:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( q = strchr( p, '=' ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:426:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( q = strstr( p, sStructHdrPlnNoLblVal ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicano.c:260:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( clockCurrTime >= 0 && TickStart->clockTime >= 0 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:629:62: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !bItemIsOver || i != num_atoms || s && p != s ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'fix_special_bonds': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:1828:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] for ( b = el; e = strchr( b, ';'); b = e+1 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicano.c: In function 'AllocateCS': /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:661:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( i >= num_atoms || s && p >= s ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicano.c:531:78: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (nMode & CMODE_ISO) && CANON_MODE_TAUT == (nMode & CANON_MODE_TAUT) && nLenLinearCTIsotopicTautomer > 0 ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicano.c:580:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( (nMode & CMODE_STEREO) && (nLenLinearCTStereoDble > 0 || nLenLinearCTStereoCarb > 0 ) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:2127:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] || 1 == at[n1].charge && 2 == at[n1].valence ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:834:62: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !bItemIsOver || i != num_atoms || s && p != s ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicano.c: In function 'FillTautLinearCT2': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:2214:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] || 1 == at[n1].charge && 2 == at[n1].valence ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:1814:27: warning: variable 'n4' set but not used [-Wunused-but-set-variable] int i, k, n1, n2, n3, n4, i1, i2, i3, i4, bond_type; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicano.c:731:30: warning: variable 'num_num' set but not used [-Wunused-but-set-variable] int i, j, len=0, g, num_num, offset, max_len = 0, len_iso=0; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:855:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( pszCoord = (MOL_COORD*) inchi_malloc(inchi_max(num_atoms,1) * sizeof(MOL_COORD)) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'is_Z_atom': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:2295:7: warning: typedef 'Z_ELNUMBER' locally defined but not used [-Wunused-local-typedefs] } Z_ELNUMBER; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'GetAtomChargeType': /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:869:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( i >= num_atoms || s && p >= s ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:931:44: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !bItemIsOver || s && p != s || i != num_atoms ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:2438:76: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !at->valence && at->charge == 0 && 1 == at->num_H && !at->radical && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:2587:92: warning: suggest parentheses around '&&' within '||' [-Wparentheses] atom[neigh].valence == 2 && (!atom[neigh].num_H || atom[neigh].num_H == 1 && atom[neigh].charge == 1) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:1024:41: warning: variable 'num_iso_H' set but not used [-Wunused-but-set-variable] int num_iso_H; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:1220:47: warning: variable 'n' set but not used [-Wunused-but-set-variable] int a, n, j, /* k,*/ sb_ord, cur_neigh, min_neigh; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:1360:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( q = strstr( p, sStructHdrXmlNumber ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'CreateCGroupInBnStruct': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:3019:25: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( nCharge==1 && at[c_point].charge != 1 || nCharge==-1 && at[c_point].charge == -1 ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:1373:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( q = strstr( p, sStructHdrXmlIdName ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:1385:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( q = strstr( p, sStructHdrXmlIdValue ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:1401:30: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( bHeaderRead && (bFatal=0, len=sizeof(sStructMsgXmlErr)-1, !memcmp(szLine, sStructMsgXmlErr, len)) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:1857:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( pszCoord = (MOL_COORD*) inchi_malloc(inchi_max(num_atoms,1) * sizeof(MOL_COORD)) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'RemoveNPProtonsAndAcidCharges': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:4111:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num = pAATG->nAtTypeTotals[ATTOT_NUM_NP_Proton] + pAATG->nAtTypeTotals[ATTOT_NUM_OH_Plus] ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:2056:41: warning: variable 'num_iso_H' set but not used [-Wunused-but-set-variable] int num_iso_H; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:2252:47: warning: variable 'n' set but not used [-Wunused-but-set-variable] int a, n, j, /* k,*/ sb_ord, cur_neigh, min_neigh; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'mark_alt_bonds_and_taut_groups': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:4235:10: warning: variable 'nOrigDelta' set but not used [-Wunused-but-set-variable] int nOrigDelta, num_changed_bonds; ^ In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichilnct.c:69:0: /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h: In function 'Extract0DParities': /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:2556:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] parity != INCHI_PARITY_UNKNOWN && parity != INCHI_PARITY_UNDEFINED ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:2572:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 0 <= a2 && a2 < nNumAtoms || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:2777:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( k = ReconcileAllCmlBondParities( at, nNumAtoms, 0 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichilnct.c: In function 'INChIToInchi_Input': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichilnct.c:251:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( orig_at_data->atom = CreateInchi_Atom( nNumAtoms ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichilnct.c:269:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( orig_at_data->stereo0D = CreateInchi_Stereo0D( nNumStereo0D ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichilnct.c:206:21: warning: variable 'szCoordOld' set but not used [-Wunused-but-set-variable] MOL_COORD *szCoordOld = NULL; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'bRestoreBnsAfterCheckAltPath': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:6017:44: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] memset( pNewVert, 0, sizeof( pNewVert ) ); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:6025:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( n = apc->bSetOldCapsVert[i] ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:6041:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( n = apc->bSetOldCapsVert[i] ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:6070:44: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] memset( pNewVert, 0, sizeof( pNewVert ) ); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'SetRadEndpoints': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:6437:23: warning: variable 'num_new_edges' set but not used [-Wunused-but-set-variable] int ret, i, j, k, num_new_edges, delta; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'SetRadEndpoints2': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:6521:30: warning: variable 'num_new_edges' set but not used [-Wunused-but-set-variable] int ret = 0, i, j, k, n, num_new_edges, delta = 1; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'bExistsAltPath': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:6982:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ((ret & 1) || (ret_val & 1)) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicans.c: In function 'UnmarkNonStereo': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichicans.c:324:42: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized] nPrevAtomRank = nRank[j]; ^ [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichimak2.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimak2.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'bIgnoreVertexNonTACN_group': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:8406:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( pBNS->edge[iuv].neighbor1 != (u/2-1) && pBNS->edge[iuv].neighbor1 != v/2-1 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'MarkRingSystemsAltBns': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:9290:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !nStackAtom || !nRingStack || !nDfsNumber || !nLowNumber || !nBondStack && num_edges || !cNeighNumb ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:9408:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( i == bond[w].neighbor1 && u == (i ^ bond[w].neighbor12) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'ReInitBnStructForAltBns': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:9613:45: warning: operation on 'pBond->cap' may be undefined [-Wsequence-point] pBond->nBondNonStereoAltBns = ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'AddRemoveProtonsRestr': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:9823:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( bSuccess = (type & AaTypMask[2*j]) && (mask && AaTypMask[2*j+1]) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:9918:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( bSuccess = (type & ArTypMask[2*j]) && (mask && ArTypMask[2*j+1]) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimak2.c: In function 'AllocateAndFillHillFormula': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimak2.c:306:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( pHillFormula = (char*) inchi_malloc( nLen+1 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimak2.c: In function 'CopyLinearCTStereoToINChIStereo': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimak2.c:425:48: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( bAllene != bAlleneInv || !bAllene && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimak2.c: In function 'UnmarkAllUndefinedUnknownStereo': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimak2.c:559:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !Stereo || Stereo && !Stereo->nNumberOfStereoCenters && !Stereo->nNumberOfStereoBonds) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimak2.c: In function 'FillOutINChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimak2.c:750:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (pCS->LinearCTStereoCarb && pCS->LinearCTStereoCarbInv || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimak2.c:937:69: warning: suggest parentheses around '&&' within '||' [-Wparentheses] t_group_info->nNumIsotopicEndpoints>1 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimak2.c:1001:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nStereoUnmarkMode = UnmarkAllUndefinedUnknownStereo( pINChI->Stereo, nUserMode ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimak2.c:1025:43: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (pCS->LinearCTIsotopicStereoCarb && pCS->LinearCTIsotopicStereoCarbInv || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimak2.c:1162:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nStereoUnmarkMode = UnmarkAllUndefinedUnknownStereo( pINChI->StereoIsotopic, nUserMode ) ) { ^ [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichimake.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c: In function 'CompareHillFormulas': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:207:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = strcmp( szEl1, szEl2 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:210:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = count2 - count1 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c: In function 'CompareHillFormulasNoH': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:239:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = strcmp( szEl1, szEl2 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:242:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = count2 - count1 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c: In function 'CompareTautNonIsoPartOfINChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:261:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = len2 - len1 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:265:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->nTautomer[i] - (int)i1->nTautomer[i] ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c: In function 'CompINChITautVsNonTaut': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:312:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = CompareHillFormulasNoH( i1->szHillFormula, i2->szHillFormula, &num_H1, &num_H2 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:321:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = i2->nNumberOfAtoms - i1->nNumberOfAtoms ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:327:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->nAtom[i] - (int)i1->nAtom[i] ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:333:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = i2->lenConnTable - i1->lenConnTable ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:337:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->nConnTable[i] - (int)i1->nConnTable[i] ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:343:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = num_H2 - num_H1 ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:359:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = CompareTautNonIsoPartOfINChI( i1, i2) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:417:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = i2->nNumberOfIsotopicAtoms - i1->nNumberOfIsotopicAtoms ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:422:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->IsotopicAtom[i].nAtomNumber - (int)i1->IsotopicAtom[i].nAtomNumber ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:424:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->IsotopicAtom[i].nIsoDifference - (int)i1->IsotopicAtom[i].nIsoDifference ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:430:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->IsotopicAtom[i].nNum_T - (int)i1->IsotopicAtom[i].nNum_T ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:432:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->IsotopicAtom[i].nNum_D - (int)i1->IsotopicAtom[i].nNum_D ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:434:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->IsotopicAtom[i].nNum_H - (int)i1->IsotopicAtom[i].nNum_H ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:440:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = i2->nNumberOfIsotopicTGroups || i1->nNumberOfIsotopicTGroups ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:475:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (i1->nTotalCharge? 1:0) - (i2->nTotalCharge? 1:0) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c: In function 'CompINChILayers': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1045:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = (int)i2->IsotopicAtom[i].nAtomNumber - (int)i1->IsotopicAtom[i].nAtomNumber ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1047:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = (int)i2->IsotopicAtom[i].nIsoDifference - (int)i1->IsotopicAtom[i].nIsoDifference ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1050:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = (int)i2->IsotopicAtom[i].nNum_T - (int)i1->IsotopicAtom[i].nNum_T ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1052:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = (int)i2->IsotopicAtom[i].nNum_D - (int)i1->IsotopicAtom[i].nNum_D ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1054:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = (int)i2->IsotopicAtom[i].nNum_H - (int)i1->IsotopicAtom[i].nNum_H ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1060:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = (int)i2->IsotopicTGroup[i].nTGroupNumber - (int)i1->IsotopicTGroup[i].nTGroupNumber ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1062:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = (int)i2->IsotopicTGroup[i].nNum_T - (int)i1->IsotopicTGroup[i].nNum_T ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1064:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = (int)i2->IsotopicTGroup[i].nNum_D - (int)i1->IsotopicTGroup[i].nNum_D ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1066:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = (int)i2->IsotopicTGroup[i].nNum_H - (int)i1->IsotopicTGroup[i].nNum_H ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c: In function 'CompareInchiStereo': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1189:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)Stereo2->nBondAtom1[i] - (int)Stereo1->nBondAtom1[i] ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1191:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)Stereo2->nBondAtom2[i] - (int)Stereo1->nBondAtom2[i] ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1193:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)Stereo2->b_parity[i] - (int)Stereo1->b_parity[i] ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1196:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)Stereo2->nNumberOfStereoBonds - (int)Stereo1->nNumberOfStereoBonds ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1209:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)Stereo2->nNumber[i] - (int)Stereo1->nNumber[i] ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1211:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)Stereo2->t_parity[i] - (int)Stereo1->t_parity[i] ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1214:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)Stereo2->nNumberOfStereoCenters - (int)Stereo1->nNumberOfStereoCenters ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1218:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (Stereo2->nCompInv2Abs < 0) - (Stereo1->nCompInv2Abs < 0) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c: In function 'CompINChI2': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1296:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = CompareHillFormulasNoH( i1->szHillFormula, i2->szHillFormula, &num_H1, &num_H2 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1305:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = i2->nNumberOfAtoms - i1->nNumberOfAtoms ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1311:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->nAtom[i] - (int)i1->nAtom[i] ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1317:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = i2->lenConnTable - i1->lenConnTable ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1321:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->nConnTable[i] - (int)i1->nConnTable[i] ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1327:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = num_H2 - num_H1 ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1343:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = CompareTautNonIsoPartOfINChI( i1, i2) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1365:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( TAUT_NON == bTaut && (i1n && i1n->nNum_H_fixed || i2n && i2n->nNum_H_fixed) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1382:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2n->nNumberOfAtoms - (int)i1n->nNumberOfAtoms ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1446:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = i2->nNumberOfIsotopicAtoms - i1->nNumberOfIsotopicAtoms ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1451:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->IsotopicAtom[i].nAtomNumber - (int)i1->IsotopicAtom[i].nAtomNumber ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1453:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->IsotopicAtom[i].nIsoDifference - (int)i1->IsotopicAtom[i].nIsoDifference ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1459:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->IsotopicAtom[i].nNum_T - (int)i1->IsotopicAtom[i].nNum_T ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1461:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->IsotopicAtom[i].nNum_D - (int)i1->IsotopicAtom[i].nNum_D ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1463:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->IsotopicAtom[i].nNum_H - (int)i1->IsotopicAtom[i].nNum_H ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1469:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = i2->nNumberOfIsotopicTGroups - i1->nNumberOfIsotopicTGroups ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1473:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->IsotopicTGroup[i].nTGroupNumber - (int)i1->IsotopicTGroup[i].nTGroupNumber ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1475:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->IsotopicTGroup[i].nNum_T - (int)i1->IsotopicTGroup[i].nNum_T ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1477:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->IsotopicTGroup[i].nNum_D - (int)i1->IsotopicTGroup[i].nNum_D ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1479:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)i2->IsotopicTGroup[i].nNum_H - (int)i1->IsotopicTGroup[i].nNum_H ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1501:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (i1->nTotalCharge? 1:0) - (i2->nTotalCharge? 1:0) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c: In function 'CompareDfsDescendants4CT': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1586:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = nDesc1 - nDesc2 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c: In function 'GetDfsOrder4CT': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1727:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nOutputString = (AT_RANK *)inchi_calloc( nTotOutputStringLen, sizeof(nOutputString[0]) ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:1765:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nOutputString = (AT_RANK *)inchi_calloc( nTotOutputStringLen, sizeof(nOutputString[0]) ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c: In function 'CompareReversedStereoINChI2': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:2203:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] s1->nBondAtom1[j1] == s2->nBondAtom1[j2] && s1->nBondAtom2[j1] < s2->nBondAtom2[j2]) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c: In function 'CompareReversedINChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:2421:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = CompareReversedStereoINChI( i1->Stereo, i2->Stereo ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:2432:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = CompareReversedStereoINChI( i1->StereoIsotopic, i2->StereoIsotopic ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c: In function 'Create_INChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:2900:39: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !out_norm_data[TAUT_NON]->at && !out_norm_data[TAUT_YES]->at || !inp_at || ret ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:3104:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (0 < NUM_H_ISOTOPES && t_group_info->tni.nNumRemovedProtonsIsotopic[0] || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:3106:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2 < NUM_H_ISOTOPES && t_group_info->tni.nNumRemovedProtonsIsotopic[2]) ; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:3103:86: warning: suggest parentheses around '&&' within '||' [-Wparentheses] s[TAUT_YES].nLenLinearCTTautomer > 0 && t_group_info && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:3109:83: warning: suggest parentheses around '&&' within '||' [-Wparentheses] s[TAUT_YES].nLenIsotopicEndpoints > 1 && t_group_info && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:3248:30: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 0, 0, s[TAUT_NON].nLenIsotopic, nMode, pBCN ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimake.c:3273:30: warning: suggest parentheses around assignment used as truth value [-Wparentheses] s[TAUT_YES].nLenIsotopic, nMode, pBCN ) ) { ^ [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichimap1.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap1.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'EliminatePlusMinusChargeAmbiguity': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:768:56: warning: 'cgNeg' may be used uninitialized in this function [-Wmaybe-uninitialized] pBNS->vert[cgNeg].st_edge.cap -= dflow; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:764:56: warning: 'cgPos' may be used uninitialized in this function [-Wmaybe-uninitialized] pBNS->vert[cgPos].st_edge.cap += dflow; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c: In function 'CanonGraph': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:2686:15: warning: 'tvh' may be used uninitialized in this function [-Wmaybe-uninitialized] Node tvc, tvh; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichican2.c:3183:8: warning: 'tvc' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( tvc == GetUnorderedPartitionMcrNode( &theta, tvc ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap1.c: In function 'CompareLinCtStereoDble': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap1.c:166:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)LinearCTStereoDble1[i].at_num1 - (int)LinearCTStereoDble2[i].at_num1 ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap1.c:168:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)LinearCTStereoDble1[i].at_num2 - (int)LinearCTStereoDble2[i].at_num2 ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap1.c:170:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)LinearCTStereoDble1[i].parity - (int)LinearCTStereoDble2[i].parity ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap1.c: In function 'CompareLinCtStereoCarb': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap1.c:195:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)LinearCTStereoCarb1[i].at_num - (int)LinearCTStereoCarb2[i].at_num ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap1.c:197:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)LinearCTStereoCarb1[i].parity - (int)LinearCTStereoCarb2[i].parity ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap1.c: In function 'Next_SB_At_CanonRanks2': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap1.c:425:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] canon_rank1_inp == *canon_rank1_min && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap1.c:451:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( cumulene_len%2 && !bAllene || /* 09-26-2003 */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap1.c: In function 'CurTreeAlloc': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap1.c:675:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( cur_tree->tree = (AT_NUMB *)inchi_calloc( num_atoms, sizeof(cur_tree->tree[0]) ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap1.c: In function 'CurTreeReAlloc': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap1.c:689:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( cur_tree->tree = (AT_NUMB *)inchi_calloc( cur_tree->max_len + cur_tree->incr_len, sizeof(cur_tree->tree[0]) ) ) { ^ [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichimap2.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c: In function 'HalfStereoBondParity': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:737:16: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( j > 0 && !r[0] || j > 1 && !r[1] ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:740:17: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( j == 2 && r[0] == r[1] || iNeigh < 0 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c: In function 'parity_of_mapped_atom2': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:898:27: warning: variable 'num_trans_from' set but not used [-Wunused-but-set-variable] int num_trans_to, num_trans_from, neigh1, neigh2; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c: In function 'BreakNeighborsTie': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:1231:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( mode == MAP_MODE_S4 && in1 || /* for S4 we need only (in1,in2) = (0,1) (0,2) (0,3) pairs of neighbors */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:1233:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] mode != MAP_MODE_STD && nSymmRank[n1] != nSymmRank[n2] ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:1253:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( mode != MAP_MODE_STD && nSymmRank[other_neigh[0]] != nSymmRank[other_neigh[1]] || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:1228:25: warning: variable 'other_neig_ord' set but not used [-Wunused-but-set-variable] int other_neigh[2], other_neig_ord[2], num_other_neigh; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c: In function 'CalculatedPathsParitiesAreIdentical': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:1879:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( nNeighMode != NEIGH_MODE_RING && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:1904:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( bParitiesInverted > 0 && !(mode == MAP_MODE_C2v || mode == MAP_MODE_S4) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:2135:21: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( s1 && !at[i11].parity || s2 && !at[i12].parity ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:2141:61: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( nNeighMode == NEIGH_MODE_RING && (i11 != i01) && (i12 != i01) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:2159:99: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (parity1 == parity1orig || parity2 == parity2orig || parity1 != parity2) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:2161:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses] parity1 != parity2 && (!ATOM_PARITY_WELL_DEF(parity1) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:2263:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses] switch ( (i11 == cur && i12 == prev_sb_neigh || i12 == cur && i11 == prev_sb_neigh) + ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:2264:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (i21 == cur && i22 == prev_sb_neigh || i22 == cur && i21 == prev_sb_neigh) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:2290:21: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( s1 && 0 > GetStereoNeighborPos( at, i11, i12 ) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:2300:75: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( nNeighMode == NEIGH_MODE_RING && (i11 != i01 || i12 != i02) && (i11 != i02 || i12 != i01) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:2310:58: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( s1 && s2 && ((i11 != i21 || i12 != i22) && (i11 != i22 || i12 != i21) || parity1 != parity2 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:2320:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( nSymmRank[cur] == nSymmRank[i01] && nSymmRank[prev_sb_neigh] == nSymmRank[i02] || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c: In function 'RemoveCalculatedNonStereoBondParities': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:2528:72: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( PARITY_ILL_DEF(at[i1].stereo_bond_parity[n1]) && PARITY_VAL(at[i1].stereo_bond_parity[n1]) > new_parity || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c: In function 'RemoveCalculatedNonStereoCenterParities': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap2.c:2756:75: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( PARITY_ILL_DEF(at[i].stereo_atom_parity) && ^ [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichimap4.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c: In function 'map_stereo_bonds4': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c:158:67: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !pCS->bStereoIsBetter /* ??? && !pCS->bFirstCT ???*/ && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c:192:47: warning: suggest parentheses around assignment used as truth value [-Wparentheses] at, num_atoms, 1 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c:204:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at_rank_canon1 == pCS->LinearCTStereoDble[nNumMappedBonds].at_num1 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c:202:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !ret1 || !pCS->bStereoIsBetter && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c:782:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] c < 0 && !pCS->bStereoIsBetter ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c: In function 'map_stereo_atoms4': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c:1028:37: warning: suggest parentheses around '&&' within '||' [-Wparentheses] !pCS->bStereoIsBetter && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c:1252:57: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( stereo_center_parity == sb_parity_calc && !EN[istk].num_to || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c:1434:28: warning: suggest parentheses around '&&' within '||' [-Wparentheses] c < 0 && !pCS->bStereoIsBetter ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c:1000:35: warning: variable 'prev_stereo_center_parity' set but not used [-Wunused-but-set-variable] int stereo_center_parity, prev_stereo_center_parity, sb_parity_calc, pass; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c:1555:25: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( UserAction && USER_ACTION_QUIT == (*UserAction)() || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c: In function 'fix_special_bonds': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:1923:61: warning: 'k_N' may be used uninitialized in this function [-Wmaybe-uninitialized] BOND_TYPE_DOUBLE == (at[i].bond_type[i1=j[k_N]] & BOND_TYPE_MASK ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:1959:48: warning: 'i2' may be used uninitialized in this function [-Wmaybe-uninitialized] iedge = pBNS->vert[i].iedge[i2]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c:2061:38: warning: 'n2' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( 1 == bFound && ^ [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichinorm.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichinorm.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichinorm.c: In function 'remove_terminal_HDT': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichinorm.c:548:13: warning: variable 'old_trans' set but not used [-Wunused-but-set-variable] S_CHAR old_trans[MAX_NUM_STEREO_BONDS]; ^ [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiparm.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiparm.c In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiparm.c:76:0: /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/ichiparm.h: In function 'ReadCommandLineParms': /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/ichiparm.h:739:43: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( q > pArg+k+1 && errno == ERANGE || t < 0.0 || t*1000.0 > (double)ULONG_MAX) ^ In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiparm.c:76:0: /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/ichiparm.h:1413:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( sz = (char*) inchi_malloc( (strlen(argv[i]) + 1)*sizeof(sz[0])) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/ichiparm.h:1503:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( sz = (char*) inchi_malloc( (len+1)*sizeof(sz[0]) ) ) ^ In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiparm.c:76:0: /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/ichiparm.h:100:19: warning: unused variable 'bDisplayCompositeResults' [-Wunused-variable] int bDisplayCompositeResults = 0; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/ichiparm.h:54:19: warning: variable 'nFontSize' set but not used [-Wunused-but-set-variable] int nFontSize = -9; ^ [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiprt1.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c: In function 'Needs2addXmlEntityRefs': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:423:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] for ( p = s; p = strchr( p, q->nChar ); p ++ ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c: In function 'OutputINChIXmlStructStartTag': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:530:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( len = Needs2addXmlEntityRefs( szSdfLabel ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:531:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( p = (char*) inchi_malloc( len+1 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:536:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( len = Needs2addXmlEntityRefs( szSdfValue ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:537:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( p = (char*) inchi_malloc( len+1 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c: In function 'OutputINChIXmlError': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:608:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( len = Needs2addXmlEntityRefs( szErrorText ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:609:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( pNewErrorText = (char*) inchi_malloc( len+1 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c: In function 'OutputINChI1': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:1517:78: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bCurIsoHPos = (pINChI->nPossibleLocationsOfIsotopicH && pINChI->nPossibleLocationsOfIsotopicH[0] > 1 || pINChI->lenTautomer > 1); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:1519:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bCurIsoHStereo = bCurIsoHPos && (bTautIsoHNum || bTautIsoAt) || bCurIso; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:1590:71: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bCurStereoSp3 = bCurRelative || bCurStereoSp3 && (pINChI->Stereo->nNumberOfStereoCenters > 1 ); /* Fix11 */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:1597:81: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bCurStereoSp3 = bCurRacemic > 1 || bCurStereoSp3 && (pINChI->Stereo->nNumberOfStereoCenters > 1 ); /* Fix11 */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:1617:69: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bIsotopicStereoAbsInverted[ii] |= bCurIsoStereoSp3 && (pINChI->StereoIsotopic->nCompInv2Abs < 0) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:1622:69: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bIsotopicStereoAbs[ii] |= bCurIsoStereoSp3 && (pINChI->StereoIsotopic->nCompInv2Abs != 0) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:1448:34: warning: variable 'bCurIsoStereo' set but not used [-Wunused-but-set-variable] int bCurIso, bCurStereo, bCurIsoStereo, bCurHasIsoStereo /* Fix14 */, bCurTaut /*, bCurTaut2*/; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:1448:22: warning: variable 'bCurStereo' set but not used [-Wunused-but-set-variable] int bCurIso, bCurStereo, bCurIsoStereo, bCurHasIsoStereo /* Fix14 */, bCurTaut /*, bCurTaut2*/; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:1795:57: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( INCHI_REC == iINChI || INCHI_BAS == iINChI && bDisconnectedCoord ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:2019:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nSegmAction = INChI_SegmentAction( sDifSegs[nCurINChISegment][DIFS_b_SBONDS] ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:2044:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nSegmAction = INChI_SegmentAction( sDifSegs[nCurINChISegment][DIFS_t_SATOMS] ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:2071:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nSegmAction = INChI_SegmentAction( sDifSegs[nCurINChISegment][DIFS_m_SP3INV] ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:2095:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nSegmAction = INChI_SegmentAction( sDifSegs[nCurINChISegment][DIFS_s_STYPE] ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:2155:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nSegmAction = INChI_SegmentAction( sDifSegs[nCurINChISegment][DIFS_i_IATOMS] ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:2181:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nSegmAction = INChI_SegmentAction( sDifSegs[nCurINChISegment][DIFS_h_H_ATOMS] ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:2217:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nSegmAction = INChI_SegmentAction( sDifSegs[nCurINChISegment][DIFS_b_SBONDS] ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:2243:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nSegmAction = INChI_SegmentAction( sDifSegs[nCurINChISegment][DIFS_t_SATOMS] ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:2267:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nSegmAction = INChI_SegmentAction( sDifSegs[nCurINChISegment][DIFS_m_SP3INV] ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:2290:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nSegmAction = INChI_SegmentAction( sDifSegs[nCurINChISegment][DIFS_s_STYPE] ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:2596:61: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( INCHI_REC == iINChI || INCHI_BAS == iINChI && bDisconnectedCoord ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:2832:68: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bTautomericOutputAllowed && bTautomeric && bIsotopicTautEqu[iCurTautMode] || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:2834:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bXml && ( bIgn_UU_Sp3_Iso[iCurTautMode] || bIgn_UU_Sp2_Iso[iCurTautMode] ) ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:1269:10: warning: variable 'bPlainTabbedOutput' set but not used [-Wunused-but-set-variable] int bPlainTabbedOutput; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:1258:30: warning: variable 'max_num_comp' set but not used [-Wunused-but-set-variable] int num_comp[TAUT_NUM], max_num_comp; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c: In function 'CleanOrigCoord': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:3561:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( q = strchr(szVal, '.') ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c: In function 'WriteOrigCoord': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:3613:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( p = (char *)memchr( szCurCoord, '\0', sizeof(szCurCoord)) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c: In function 'WriteOrigAtoms': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:3715:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( val = at[j].charge ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:3722:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( val = at[j].radical ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:3726:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( val = at[j].iso_atw_diff ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:3748:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( val = at[j].num_iso_H[k] ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c: In function 'WriteOrigBonds': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:3910:37: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( chain_len == 1 && chain_len2 == 1 || /* regular stereobond */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:3808:95: warning: variable 'num_trans' set but not used [-Wunused-but-set-variable] int j, k, k2, kk, len, cur_len, j2=0, bond_stereo, bond_char, bond_parity, bond_parityNM, num_trans; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c: In function 'FillOutOrigStruct': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:4073:39: warning: suggest parentheses around assignment used as truth value [-Wparentheses] orig_inp_data->szCoord, &i, szBuf, sizeof(szBuf) )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:4096:35: warning: suggest parentheses around assignment used as truth value [-Wparentheses] orig_inp_data->at, &i, szBuf, sizeof(szBuf), sd)) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c:4115:35: warning: suggest parentheses around assignment used as truth value [-Wparentheses] orig_inp_data->at, &i, szBuf, sizeof(szBuf), NULL)) { ^ [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiprt2.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c: In function 'Eql_INChI_Isotopic': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c:174:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] i1->IsotopicAtom && i2->IsotopicAtom && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c:178:57: warning: suggest parentheses around '&&' within '||' [-Wparentheses] i1->IsotopicTGroup && i2->IsotopicTGroup && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c: In function 'Eql_INChI_Aux_Num': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c:246:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( (eql1 & EQL_NUM_ISO) && !a1->bIsIsotopic || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c: In function 'MakeCtStringOld': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c:530:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] i+1 < nLenCT && LinearCT[i+1] < (nMax=LinearCT[i])) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c: In function 'MakeIsoTautString': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c:1234:13: warning: variable 'nMax' set but not used [-Wunused-but-set-variable] AT_NUMB nMax; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c: In function 'MakeIsoHString': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c:1320:13: warning: variable 'nMax' set but not used [-Wunused-but-set-variable] AT_NUMB nMax; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c: In function 'MakeAbcNumber': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c:1482:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nChar = nValue % ALPHA_BASE ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c: In function 'abctol': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c:1505:17: warning: variable 'sign' set but not used [-Wunused-but-set-variable] long sign = 1; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c: In function 'MakeDecNumber': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c:1595:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nChar = nValue % DECIMAL_BASE ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c: In function 'map_stereo_bonds4': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c:788:33: warning: 'at_to_n2' may be used uninitialized in this function [-Wmaybe-uninitialized] CurTreeRemoveIfLastAtom( cur_tree, at_to_n2 ); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichimap4.c:863:26: warning: 'at_to_n1' may be used uninitialized in this function [-Wmaybe-uninitialized] CurTreeRemoveIfLastAtom( cur_tree, at_to_n1 ); ^ [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiqueu.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiprt3.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c: In function 'bIsCenterPointStrict': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c:180:72: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( endpoint_valence && (endpoint_valence > atom[iat].valence && /* added a check for negative charge or H 3-31-03 */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c: In function 'DFS_FindTautInARing': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c:369:18: warning: variable 'nRingSystem' set but not used [-Wunused-but-set-variable] AT_RANK nRingSystem; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c: In function 'DFS_FindTautAltPath': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c:541:30: warning: suggest parentheses around '&&' within '||' [-Wparentheses] nLenDfsPath && nxt_at == (int)DfsPath[nLenDfsPath-1].at_no /* step backwards */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c:486:18: warning: variable 'nRingSystem' set but not used [-Wunused-but-set-variable] AT_RANK nRingSystem; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c: In function 'AddBondsPos': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c:655:73: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( BondPos[i].nAtomNumber == BondPosTmp[j].nAtomNumber && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c: In function 'Check7MembTautRing': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c:831:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( j == BOND_SINGLE && (!atom[o2_at].endpoint && !eif2.cDonor || !atom[o1_at].endpoint && !eif1.cAcceptor) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c:833:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] j == BOND_DOUBLE && (!atom[o2_at].endpoint && !eif2.cAcceptor || !atom[o1_at].endpoint && !eif1.cDonor) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c:831:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( j == BOND_SINGLE && (!atom[o2_at].endpoint && !eif2.cDonor || !atom[o1_at].endpoint && !eif1.cAcceptor) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c:842:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = (nNumBondPos > *pnNumBondPos) || (nNumEndPoint > *pnNumEndPoint)) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c: In function 'Check6MembTautRing': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c:1082:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = (nNumBondPos > *pnNumBondPos) || (nNumEndPoint > *pnNumEndPoint)) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c: In function 'Check15TautPath': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c:1277:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = (nNumBondPos > *pnNumBondPos) || (nNumEndPoint > *pnNumEndPoint)) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c: In function 'Check5MembTautRing': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c:1416:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( i == BOND_SINGLE && (!atom[n1_at].endpoint && !eif1.cDonor || !atom[n2_at].endpoint && !eif2.cAcceptor ) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c:1418:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] i == BOND_DOUBLE && (!atom[n1_at].endpoint && !eif1.cAcceptor || !atom[n2_at].endpoint && !eif2.cDonor) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c:1416:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( i == BOND_SINGLE && (!atom[n1_at].endpoint && !eif1.cDonor || !atom[n2_at].endpoint && !eif2.cAcceptor ) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c:1426:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = (nNumBondPos > *pnNumBondPos) || (nNumEndPoint > *pnNumEndPoint)) { ^ In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichilnct.c:69:0: /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h: In function 'Extract0DParities': /usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi/aux2atom.h:2731:47: warning: 'next_ord' may be used uninitialized in this function [-Wmaybe-uninitialized] at[i1].sb_ord[j1] = sb_ord_from_i1; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c: In function 'str_AuxInvSp3Numb': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c:1400:32: warning: variable 'pINChI_Aux_Prev' set but not used [-Wunused-but-set-variable] INChI_Aux *pINChI_Aux, *pINChI_Aux_Prev, *pINChI_Aux_Taut; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c: In function 'str_AuxIsoNumb': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c:1539:32: warning: variable 'pINChI_Aux_Prev' set but not used [-Wunused-but-set-variable] INChI_Aux *pINChI_Aux, *pINChI_Aux_Prev, *pINChI_Aux_Taut; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c:1538:29: warning: variable 'pINChI_Taut' set but not used [-Wunused-but-set-variable] INChI *pINChI, *pINChI_Taut; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c:1538:19: warning: variable 'pINChI' set but not used [-Wunused-but-set-variable] INChI *pINChI, *pINChI_Taut; ^ [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiread.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c: In function 'str_AuxInvIsoSp3': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c:1965:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pINChI->nPossibleLocationsOfIsotopicH && pINChI->nPossibleLocationsOfIsotopicH[0] > 1) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c: In function 'str_AuxInvIsoSp3Numb': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c:2132:32: warning: variable 'pINChI_Aux_Prev' set but not used [-Wunused-but-set-variable] INChI_Aux *pINChI_Aux, *pINChI_Aux_Prev, *pINChI_Aux_Taut; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c: In function 'str_Charge2': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c:2594:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nTotalCharge_Prev = pINChI_Prev->nTotalCharge ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c:2663:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nTotalCharge_Prev = pINChI_Prev->nTotalCharge ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c:2671:22: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nTotalCharge_Taut_Prev = pINChI_Taut_Prev->nTotalCharge ) { ^ [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiring.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiring.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c: In function 'bin_AuxTautTrans': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c:2980:96: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (nTrans_n = (AT_NUMB *)inchi_calloc( num_components+1, sizeof(nTrans_n[0]))) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'ReadWriteInChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:1040:22: warning: the address of 'szMessage' will always evaluate as 'true' [-Waddress] if ( szMessage ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:1074:55: warning: variable 'len' set but not used [-Wunused-but-set-variable] int iRec, iMob, iComp, nComp, len; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:489:17: warning: variable 'pTAB' set but not used [-Wunused-but-set-variable] const char *pTAB; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:488:10: warning: variable 'bPlainTabbedOutput' set but not used [-Wunused-but-set-variable] int bPlainTabbedOutput; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:480:18: warning: variable 'bStereoType' set but not used [-Wunused-but-set-variable] int pState, bStereoType; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'OutputInChIAsRequested': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:1479:47: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( bReqNonTaut || j != TAUT_NON && OneInput->pInpInChI[iINChI][j] ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:1515:38: warning: suggest parentheses around '&&' within '||' [-Wparentheses] else if ( !k && nModeProtonIsoExchgH[iINChI] == MODE_PIXH_ADD_TO_FIRST || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:1616:62: warning: suggest parentheses around '&&' within '||' [-Wparentheses] int cur_is_non_taut = cur_is_in_non_taut && 0 == pINChI[iINChI][k][TAUT_NON]->lenTautomer || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:1652:66: warning: suggest parentheses around '&&' within '||' [-Wparentheses] int cur_is_non_taut = cur_is_in_non_taut && 0 == pINChI[iINChI][k][TAUT_NON]->lenTautomer || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:1414:53: warning: variable 'iINChI2' set but not used [-Wunused-but-set-variable] int j, k, k1, k2, ret2=0, iINChI, iINChI1, iINChI2; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'bInpInchiComponentExists': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:1872:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( INCHI_BAS != iInChI && iInChI != INCHI_REC || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'bInpInchiComponentDeleted': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:1884:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( INCHI_BAS != iInChI && iInChI != INCHI_REC || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'bRevInchiComponentExists': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:1897:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] INCHI_BAS != iInChI && iInChI != INCHI_REC || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:1898:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] TAUT_NON != bMobileH && TAUT_YES != bMobileH || k < 0 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'bRevInchiComponentDeleted': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:1912:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] INCHI_BAS != iInChI && iInChI != INCHI_REC || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:1913:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] TAUT_NON != bMobileH && TAUT_YES != bMobileH || k < 0 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'bInChIHasReconnectedMetal': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:2040:67: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( pInChI->nNumberOfAtoms > 1 || pInChI->nNum_H && pInChI->nNum_H[0] ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'SetProtonsAndXchgIsoH': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:2139:77: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( nModeProtonIsoExchgH[iINChI] == MODE_PIXH_ADD_A_PIXH_COMPONENT && ^ [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr1.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'InChILine2Data': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:2511:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pInChI_Alt && pInChI_Alt->nNumberOfIsotopicAtoms; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:2518:138: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (!pInChI->StereoIsotopic->nCompInv2Abs || NO_VALUE_INT == pInChI->StereoIsotopic->nCompInv2Abs) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:2590:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pInChI_Alt && pInChI_Alt->nNumberOfIsotopicAtoms; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:2626:47: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pInChI_Alt && pInChI_Alt->nNumberOfIsotopicAtoms; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:2703:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pAltInChI && ( ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:2730:118: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (!pInChI->Stereo->nCompInv2Abs || NO_VALUE_INT == pInChI->Stereo->nCompInv2Abs) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:2785:77: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !pInChI->StereoIsotopic && 0 > (ret2 = CopySegment( pInChI, pAltInChI, CPY_SP3_M, 1, -1)) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:2869:138: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (!pInChI->StereoIsotopic->nCompInv2Abs || NO_VALUE_INT == pInChI->StereoIsotopic->nCompInv2Abs) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:2923:138: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (!pInChI->StereoIsotopic->nCompInv2Abs || NO_VALUE_INT == pInChI->StereoIsotopic->nCompInv2Abs) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:3005:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( pInChI->Stereo && pInChI->Stereo->nCompInv2Abs == NO_VALUE_INT || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:2304:51: warning: variable 'retAux' set but not used [-Wunused-but-set-variable] int iINChI, i, j, k, m, len1, len2, ret2 = 0, retAux = 0, stateAux = 0; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'ParseAuxSegmentNumbers': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:3531:38: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( (isdigit(UCINT *pStart) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'ReadInChICoord': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:4054:61: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( pLine->len == 0 || c != SEG_END && c != RI_ERR_EOF && !INCHI_INP_EOL(c) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:4032:14: warning: variable 'fst' set but not used [-Wunused-but-set-variable] int c, fst, ret=RI_ERR_ALLOC; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'ReadInChILine': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:4337:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( pLine->len == 0 || c != SEG_END && c != RI_ERR_EOF || !(p = strstr(pLine->str, "InChI=1")) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:4302:14: warning: variable 'fst' set but not used [-Wunused-but-set-variable] int c, fst, ret=RI_ERR_ALLOC, len; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'ParseSegmentIsoAtoms': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:4916:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !(bMobileH==TAUT_YES && state == IST_MOBILE_H_ISO_ATOMS || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:4943:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( (isdigit(*pStart) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:5059:96: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( p > pEnd || !isoAtom.nIsoDifference && !isoAtom.nNum_T && !isoAtom.nNum_D && !isoAtom.nNum_H ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'ParseSegmentSp3s': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:5235:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !pStereo[0]->t_parity && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'ParseSegmentSp3m': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:5339:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !bMobileHFrom && bIsoFrom || bMobileHFrom && !bIsoFrom ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:5398:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !pStereo[0]->t_parity && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'ParseSegmentSp3': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:5504:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !pStereo[0]->b_parity && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiring.c: In function 'GetMinRingSize': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiring.c:217:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while ( qLen = QueueLength( q ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:5508:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses] !pStereo[0]->nBondAtom2 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:5540:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( (isdigit(*pStart) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'ParseSegmentSp2': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:5897:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( (isdigit(*pStart) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:6132:66: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pStereo[0]->nBondAtom1[iBond-1] == nAtom1 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:6159:66: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pStereo[0]->nBondAtom1[iBond-1] == nAtom1 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'ParseSegmentCharge': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:6278:38: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( (isdigit(UCINT *pStart) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'ParseSegmentMobileH': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:6542:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( curAtom = nxtAtom = (int)inchi_strtol( p, &q, base ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:6648:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( p = t ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:6741:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !num_Atoms || p < pEnd && !isdigit( UCINT *p) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:6395:10: warning: variable 'num_open' set but not used [-Wunused-but-set-variable] int num_open, state, ret, nAltMobileH = ALT_TAUT(bMobileH); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:6392:37: warning: variable 'nNumBonds' set but not used [-Wunused-but-set-variable] int nNumComponents, iComponent, nNumBonds, lenTautomer, tg_pos_Tautomer, iTGroup; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'ParseSegmentConnections': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:7252:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddLinkedBond( last_atom[num_open], curAtom, (AT_NUMB)nNumAtoms, pLB ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:7259:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( curAtom = (AT_NUMB)inchi_strtol( p, &q, base ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:7260:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddLinkedBond( last_atom[num_open], curAtom, (AT_NUMB)nNumAtoms, pLB ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:7274:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( curAtom = (AT_NUMB)inchi_strtol( p, &q, base ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:7275:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddLinkedBond( last_atom[num_open], curAtom, (AT_NUMB)nNumAtoms, pLB ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:7318:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddLinkedBond( last_atom[num_open], curAtom, (AT_NUMB)nNumAtoms, pLB ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:7334:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddLinkedBond( last_atom[--num_open], curAtom, (AT_NUMB)nNumAtoms, pLB ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:7346:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddLinkedBond( last_atom[num_open-1], curAtom, (AT_NUMB)nNumAtoms, pLB ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:7353:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddLinkedBond( last_atom[num_open], curAtom, (AT_NUMB)nNumAtoms, pLB ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:7375:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( j = pLB->pBond[i+1].prev ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:6989:73: warning: variable 'iBond' set but not used [-Wunused-but-set-variable] int nNumComponents, iComponent, nNumAtoms, nNumBonds, lenConnTable, iBond; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'GetTgroupInfoFromInChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:569:16: warning: variable 'tiSymmRank' set but not used [-Wunused-but-set-variable] AT_NUMB *tiSymmRank = NULL; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:568:16: warning: variable 'tSymmRank' set but not used [-Wunused-but-set-variable] AT_NUMB *tSymmRank = NULL; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:566:47: warning: variable 'bIso' set but not used [-Wunused-but-set-variable] int ret, i, j, k, itg, num_atoms, len_tg, bIso, num_t_groups; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'cmp_charge_val': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:687:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = (int)p1->nValence - (int)p2->nValence ) /* smaller valence first */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:689:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = abs((int)p1->nCharge) - abs((int)p2->nCharge )) /* smaller abs charge first */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:691:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( diff = (int)p2->nCharge - (int)p1->nCharge ) /* (+) first, (-) second */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'bMayBeACationInMobileHLayer': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:711:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] for ( b = szEl; e = strchr( b, ';'); b = e+1 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:719:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( p = (char *)memchr( en, at[iat].el_number, ne ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'clean_charge_val': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:780:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( (bTautomeric || j && bFixedHTautomeric) && pChargeVal[i].nCharge < 0 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'ParseSegmentFormula': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:7572:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( pInpInChI[bMobileH][i].nAtom = (U_CHAR *) inchi_malloc( (len + 1) * sizeof(pInpInChI[0][0].nAtom[0]) ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:7583:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( pInpInChI[bMobileH][i].szHillFormula = (char *) inchi_malloc( inchi_max(len,2) ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'GetAtomRestoreInfo': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:853:9: warning: variable 'nLastFoundValenceOrdNumber' set but not used [-Wunused-but-set-variable] int nLastFoundValenceOrdNumber, nLastFoundValenceState; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:852:37: warning: variable 'nFoundNeutralValenceOrdNumber' set but not used [-Wunused-but-set-variable] int nFoundNeutralValenceExcess, nFoundNeutralValenceOrdNumber; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:851:37: warning: variable 'nFirstNeutralValenceExcess' set but not used [-Wunused-but-set-variable] int nOctetNeutralValenceExcess, nFirstNeutralValenceExcess; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:851:9: warning: variable 'nOctetNeutralValenceExcess' set but not used [-Wunused-but-set-variable] int nOctetNeutralValenceExcess, nFirstNeutralValenceExcess; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:849:46: warning: variable 'num_non_bonding_electrons' set but not used [-Wunused-but-set-variable] int i, j, j2, k, k2, charge, cur_charge, num_non_bonding_electrons; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:849:26: warning: variable 'charge' set but not used [-Wunused-but-set-variable] int i, j, j2, k, k2, charge, cur_charge, num_non_bonding_electrons; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'CopySegment': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:7806:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses] stereoFrom->nBondAtom1 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:7859:43: warning: suggest parentheses around '&&' within '||' [-Wparentheses] stereoFrom->t_parity && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'BondFlowMaxcapMinorder': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:1504:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( nStereo && pSrm->bFixStereoBonds || !nMetal || !pSrm->bMetalAddFlower ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:1524:75: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( pVA[iat].cMetal && !at->endpoint && !pVA[neigh].cMetal && atom[neigh].endpoint|| ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'nCountBnsSizes': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:1687:39: warning: variable 'metal_group_number' set but not used [-Wunused-but-set-variable] int type, neigh_type, metal_group_number; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'nAddSuperCGroups': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:1999:74: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( pTCGroups->nGroup[k] >= 0 || pTCGroups->pTCG[i].ord_num && !IS_BNS_VT_M_GR(pTCGroups->pTCG[i].type) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'AddRadicalToMetal': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:2310:39: warning: variable 'pG2' set but not used [-Wunused-but-set-variable] BNS_VERTEX *pG0=NULL, *pG1=NULL, *pG2=NULL, *pG3=NULL; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:2310:28: warning: variable 'pG1' set but not used [-Wunused-but-set-variable] BNS_VERTEX *pG0=NULL, *pG1=NULL, *pG2=NULL, *pG3=NULL; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:2310:17: warning: variable 'pG0' set but not used [-Wunused-but-set-variable] BNS_VERTEX *pG0=NULL, *pG1=NULL, *pG2=NULL, *pG3=NULL; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'AddCGroups2TCGBnStruct': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:2985:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( IS_BNS_VT_M_GR( pCN[i1].v.type ) && IS_BNS_VT_ATOM( pCN[i2].v.type ) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:3073:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (pVA[c_point].cMetal && pVA[c_point].cNumBondsToMetal || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:2793:20: warning: variable 'nMaxCGroupNumber' set but not used [-Wunused-but-set-variable] int nMaxCGroupNumber = 0; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:2788:39: warning: variable 'j2' set but not used [-Wunused-but-set-variable] int i, i1, i2, j, j1, j2, k, k1, k2, n, c_point, c_neigh, cap, flow; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:2788:35: warning: variable 'j1' set but not used [-Wunused-but-set-variable] int i, i1, i2, j, j1, j2, k, k1, k2, n, c_point, c_neigh, cap, flow; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:2774:24: warning: variable 'ret2' set but not used [-Wunused-but-set-variable] int ret = 0, ret1, ret2, ret3, bNeedsFlower; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:2774:18: warning: variable 'ret1' set but not used [-Wunused-but-set-variable] int ret = 0, ret1, ret2, ret3, bNeedsFlower; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'AllocateAndInitTCGBnStruct': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:3278:9: warning: variable 'max_tg' set but not used [-Wunused-but-set-variable] int max_tg, max_edges, max_vertices, len_alt_path, max_iedges, num_iedges, num_altp; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:3276:63: warning: variable 'flag_alt_bond' set but not used [-Wunused-but-set-variable] int f1, f2, c1, c2, edge_cap, edge_flow, st_cap, st_flow, flag_alt_bond; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'EvaluateChargeChanges': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:3627:27: warning: variable 'v0' set but not used [-Wunused-but-set-variable] int pass, i, j, v0, v1, v2, v, ineigh1, /*ineigh2,*/ vLast, n, delta, ret, ie, err = 0; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'RunBnsTestOnce': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:3786:21: warning: variable 'ret2' set but not used [-Wunused-but-set-variable] int delta, ret, ret2, pass; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'comp_cc_cand': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:3844:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)p2->cMetal - (int)p1->cMetal ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:3846:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)p2->cNumBondsToMetal - (int)p1->cNumBondsToMetal ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:3848:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)p2->cPeriodicRowNumber - (int)p1->cPeriodicRowNumber ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:3850:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)p2->num_bonds - (int)p1->num_bonds ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:3852:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)p1->chem_valence - (int)p2->chem_valence ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'AddToEdgeList': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:3966:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AllocEdgeList( pEdges, pEdges->num_alloc + nAddLen ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'RemoveFromEdgeListByValue': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:4006:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = RemoveFromEdgeListByIndex( pEdges, i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'MakeOneInChIOutOfStrFromINChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:4366:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( i = bNumHeterAtomHasIsotopicH( at3, num_atoms ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:4388:30: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( k==TAUT_NON && (ip->nMode & REQ_MODE_BASIC ) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c: In function 'DisconnectedConnectedH': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c:4609:31: warning: variable 'num_iso_H' set but not used [-Wunused-but-set-variable] int i, j, k, n, m, num_H, num_iso_H; ^ [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr2.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr2.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'RestoreAtomConnectionsSetStereo': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:186:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = GetTgroupInfoFromInChI( &pStruct->ti, at, NULL, pInChI ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:260:24: warning: operation on 'jv' may be undefined [-Wsequence-point] at[jv = at[n_vertex].neighbor[0]].valence + at[jv].num_H == 3 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:262:24: warning: operation on 'jn' may be undefined [-Wsequence-point] at[jn = at[n_vertex].neighbor[1]].valence + at[jn].num_H == 3 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:288:44: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( diff < 0 || diff == 0 && diff2 <= 0) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:116:19: warning: variable 'num_stereo_bonds' set but not used [-Wunused-but-set-variable] int num_stereo_bonds, num_stereo_centers, num_stereo_bonds2, num_stereo_centers2; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'CopyBnsToAtom': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:769:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( charge = pe->flow ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:776:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( charge = pe->cap - pe->flow ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:788:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( charge = pv->st_edge.cap - pv->st_edge.flow ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'set_cumulene_0D_parity': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:1337:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( p1 = is_in_the_list( at[i1].neighbor, (AT_NUMB)idelH1, at[i1].valence ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:1348:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( p2 = is_in_the_list( at[i2].neighbor, (AT_NUMB)idelH2, at[i2].valence ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'MoveRadToAtomsAddCharges': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:1525:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( delta = pv->st_edge.cap - pv->st_edge.flow ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:1596:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( delta = pv->st_edge.cap - pv->st_edge.flow ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'AdjustTgroupsToForbiddenEdges2': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:1790:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] num_eql_mobile_gr == num_endpoints && !num_forbidden || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:1791:25: warning: suggest parentheses around '&&' within '||' [-Wparentheses] !tg_number && !has_mobile_H ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:2292:78: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (MobileGr[j].atom_type_pVA & (EL_TYPE_O | EL_TYPE_S)) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:2351:23: warning: variable 'ie' set but not used [-Wunused-but-set-variable] EdgeIndex ie, ie1, ie2; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:2476:78: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (MobileGr[j].atom_type_pVA & (EL_TYPE_O | EL_TYPE_S)) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:2455:23: warning: variable 'ie' set but not used [-Wunused-but-set-variable] EdgeIndex ie, ie1, ie2; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:1664:20: warning: variable 'bonds_valence' set but not used [-Wunused-but-set-variable] int num_bonds, bonds_valence; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:1664:9: warning: variable 'num_bonds' set but not used [-Wunused-but-set-variable] int num_bonds, bonds_valence; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'RearrangePlusMinusEdgesFlow': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:2745:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AllocEdgeList( &NewlyFixedEdges, num_tot + pBNS->num_bonds ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:2778:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NewlyFixedEdges, eMinus, 0 )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:2786:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NewlyFixedEdges, ePlus, 0 )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:2793:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NewlyFixedEdges, i, 0 )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'IncrementZeroOrderBondsToHeteroat': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:2884:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NewlyFixedEdges, pe - pBNS->edge, FIX_BOND_ADD_ALLOC )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:2898:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NewlyFixedEdges, pe - pBNS->edge, FIX_BOND_ADD_ALLOC )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:2936:58: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == vMeFlower0 && vPathStart == vNeighMeigh || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:2945:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NewlyFixedEdges, peZero - pBNS->edge, FIX_BOND_ADD_ALLOC )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'MovePlusFromS2DiaminoCarbon': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:3027:19: warning: operation on 'pvS' may be undefined [-Wsequence-point] (pvS = pBNS->vert+i)->st_edge.cap == pvS->st_edge.flow && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:3087:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'EliminateChargeSeparationOnHeteroatoms': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:3218:58: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == vPlusSuper && vPathStart == vPlusMinus || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'RestoreCyanoGroup': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:3718:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'RestoreIsoCyanoGroup': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:3785:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, eNMinusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:3790:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, eNMinusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:3798:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, eNPlusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:3803:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, eNPlusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:3809:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, eNFlowerEdge1, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:3889:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &IsoCyanoCarbonChargeEdges, eNMinusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:3892:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &IsoCyanoCarbonChargeEdges, eNPlusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:3895:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &IsoCyanoCarbonChargeEdges, eN34Edge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:3925:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:3964:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'FixMetal_Nminus_Ominus': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4057:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, e, num_at ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4063:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, e, num_at ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4069:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, e, num_at ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4108:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4002:44: warning: variable 'nDeltaChargeMax' set but not used [-Wunused-but-set-variable] int num_failed, num_success, n, nDeltaChargeMax, nMetalCharge; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'RestoreNNNgroup': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4224:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4231:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, eNMinusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4234:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, eNPlusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4263:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, eNMinusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4271:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, eNPlusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4275:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllNIIIChargeEdges, eNPlusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4325:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllNNNTermAtoms, i, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4333:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNMinusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4343:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNPlusEdge1, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4353:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNMinusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4356:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNMinusEdge2, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4366:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNMinusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4369:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNPlusEdge2, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4446:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4520:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, eNMinusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4523:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, eNPlusEdge1, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4526:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, eNMinusEdge1, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4529:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, eNPlusEdge2, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4532:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, eNMinusEdge2, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4542:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNPlusEdge1, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4545:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNMinusEdge1, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4548:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNPlusEdge2, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4551:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNMinusEdge2, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4563:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNMinusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4566:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNMinusEdge1, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4569:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNPlusEdge2, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4572:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNMinusEdge2, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4588:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNPlusEdge1, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4591:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNMinusEdge1, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4594:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNPlusEdge2, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4606:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNPlusEdge1, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4609:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNMinusEdge1, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4612:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNMinusEdge2, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4623:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNFlowerEdge1, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4628:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NNNChargeEdges, eNFlowerEdge2, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4656:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4663:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, eNMinusEdge, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4666:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, eNPlusEdge1, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4669:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, eNMinusEdge1, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4672:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, eNPlusEdge2, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4675:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, eNMinusEdge2, INC_EDGE_LIST ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'EliminateNitrogen5Val3Bonds': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4759:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] !(at2[i].endpoint || pStruct->endpoint && pStruct->endpoint[i]) && pVA[i].cnListIndex > 0 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4765:31: warning: variable 'pv1' set but not used [-Wunused-but-set-variable] BNS_VERTEX *pv0, *pv1, *pv2 = NULL; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4764:59: warning: variable 'ie01' set but not used [-Wunused-but-set-variable] EdgeIndex iePlus, ie, ie12 = NO_VERTEX, ie02, ie01; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4764:53: warning: variable 'ie02' set but not used [-Wunused-but-set-variable] EdgeIndex iePlus, ie, ie12 = NO_VERTEX, ie02, ie01; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'Convert_SIV_to_SVI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4924:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &FlowerEdgesList, k, 64 )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4933:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &FlowerEdgesList, k, 64 )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:4953:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &FlowerEdgesList, k, 64 )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5019:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (vPathEnd == v1 && vPathStart == v2 || vPathEnd == v2 && vPathStart == v1) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5041:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &FlowerEdgesList, nFlowerEdge, 64 )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'PlusFromDB_N_DB_O_to_Metal': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5103:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, k, 64 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5108:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CarbonChargeEdges, k, 64 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5145:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NO_EdgeList, k, 64 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5173:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (vPathEnd == v1 && vPathStart == v2 || vPathEnd == v2 && vPathStart == v1) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5066:21: warning: variable 'bForbiddenCarbonCharges' set but not used [-Wunused-but-set-variable] int i, j, k, n, bForbiddenCarbonCharges, delta, ret2, ret, num_NO, num_M; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'RemoveRadFromMobileHEndpoint': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5369:83: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pVA[centerpoint_found].cNumValenceElectrons == 4 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5375:92: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[centerpoint].valence == at[centerpoint_found].valence && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5373:81: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pVA[centerpoint].cPeriodicRowNumber != 1 ) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5492:83: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pVA[centerpoint_found].cNumValenceElectrons == 4 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5498:92: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[centerpoint].valence == at[centerpoint_found].valence && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5496:81: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pVA[centerpoint].cPeriodicRowNumber != 1 ) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5577:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret2 == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5272:17: warning: variable 'tgroup_number' set but not used [-Wunused-but-set-variable] int tgroup_number, num_endpoints; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'RemoveRadFromMobileHEndpointFixH': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5770:83: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pVA[centerpoint_found].cNumValenceElectrons == 4 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5776:92: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[centerpoint].valence == at[centerpoint_found].valence && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5774:81: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pVA[centerpoint].cPeriodicRowNumber != 1 ) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5882:83: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pVA[centerpoint_found].cNumValenceElectrons == 4 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5888:92: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[centerpoint].valence == at[centerpoint_found].valence && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5886:81: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pVA[centerpoint].cPeriodicRowNumber != 1 ) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5914:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret3 == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:6014:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] !IS_C(endpoint2_found) && IS_C(endpoint2) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:6016:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] !IS_C(centerpoint_found) && IS_C(centerpoint) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:6084:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret2 == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:6161:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] !IS_C(endpoint2_found) && IS_C(endpoint1) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:6163:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] !IS_C(centerpoint_found) && IS_C(centerpoint) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5638:18: warning: variable 'tgroup_number' set but not used [-Wunused-but-set-variable] int tgroup_number, num_endpoints; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:5633:34: warning: variable 'num_endp' set but not used [-Wunused-but-set-variable] int itg, j, k, n, m, num_endp; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'MoveChargeToMakeCenerpoints': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:6279:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( delta = pEdgePlus->flow ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:6294:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1p && vPathStart == v2p || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:6333:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1m && vPathStart == v2m || ^ [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr3.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr4.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr4.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c: In function 'FillTgDiffHChgFH': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:249:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( pAtomIndList, IndList.pnEdges[j+2], INC_ADD_EDGE )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:133:25: warning: variable 'itg_prev' set but not used [-Wunused-but-set-variable] int i, j, iat, itg, itg_prev, num, itg_out, bOverflow; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c: In function 'FixFixedHRestoredStructure': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:327:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:340:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, j, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:343:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NFlowerEdges, j, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:347:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &OtherNFlowerEdges, j, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:361:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &SFlowerEdges, j, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:371:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllBondEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:393:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:397:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:407:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] !pc2i->nNumTgDiffMinus && !pc2i->nNumTgDiffH ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:437:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:449:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:455:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_SB_O_Minus, num_DB_O ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:477:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:505:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:511:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:423:15: warning: variable 'iat_DB_O' set but not used [-Wunused-but-set-variable] short iat_DB_O[MAX_DIFF_FIXH], iat_SB_O_Minus[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:540:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (pc2i->c2at[i].nValElectr == 5 && pc2i->c2at[i].nPeriodNum == 1 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:550:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:562:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pVA[iat].cNumValenceElectrons == 5 && pVA[iat].cPeriodicRowNumber > 1) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:570:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:575:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_DB_O_Plus, num_SB_NH ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:598:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:633:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:639:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:530:15: warning: variable 'iat_DB_O_Plus' set but not used [-Wunused-but-set-variable] short iat_DB_O_Plus[MAX_DIFF_FIXH], iat_SB_NH[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:685:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:707:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:712:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_SB_N_Minus, num_DB_O ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:734:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:762:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:768:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:662:46: warning: variable 'iat_DB_O' set but not used [-Wunused-but-set-variable] short iat_SB_N_Minus[MAX_DIFF_FIXH], iat_DB_O[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:820:69: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pnMobHInChI && pnMobHInChI[i] == 1 && pnFixHInChI && pnFixHInChI[i] == -1 ) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:824:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:829:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_SB_N_Minus, num_DB_O ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:852:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:880:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:886:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:791:46: warning: variable 'iat_DB_O' set but not used [-Wunused-but-set-variable] short iat_SB_N_Minus[MAX_DIFF_FIXH], iat_DB_O[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:919:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pVA[iat].cNumValenceElectrons == 5 && pVA[iat].cPeriodicRowNumber == 1) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:929:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:949:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:954:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_SB_Neutr, num_DB_Charged ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:976:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1004:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1010:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:907:44: warning: variable 'iat_DB_Charged' set but not used [-Wunused-but-set-variable] short iat_SB_Neutr[MAX_DIFF_FIXH], iat_DB_Charged[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1034:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (pc2i->c2at[i].nValElectr == 5 && pc2i->c2at[i].nPeriodNum == 1 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1045:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1061:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1066:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_DB_O, num_SB_NH ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1088:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1116:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1122:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1028:15: warning: variable 'iat_DB_O' set but not used [-Wunused-but-set-variable] short iat_DB_O[MAX_DIFF_FIXH], iat_SB_NH[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1163:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pc2i->c2at[i].nValElectr == 5 && pc2i->c2at[i].nPeriodNum == 1) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1172:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1203:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( CurrEdges.num_edges, CurChargeEdges.num_edges ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1224:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1256:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1262:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1306:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (!pc2i->c2at[i].nFixHInChI && pc2i->c2at[i].nMobHInChI == pc2i->c2at[i].nFixHRevrs || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1310:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( &CurChargeEdges, e, INC_ADD_EDGE )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1320:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (!pc2i->c2at[i].nFixHRevrs && pc2i->c2at[i].nMobHRevrs == pc2i->c2at[i].nFixHInChI || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1325:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1330:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( CurrEdges.num_edges, CurChargeEdges.num_edges ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1359:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1391:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1397:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1421:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pc2i->c2at[i].nValElectr == 5 && pc2i->c2at[i].nPeriodNum == 1) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1432:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1444:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1450:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_SB_NHm_Neutr, num_DB_NHn_Plus ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1472:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1500:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1506:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1416:15: warning: variable 'iat_DB_NHn_Plus' set but not used [-Wunused-but-set-variable] short iat_DB_NHn_Plus[MAX_DIFF_FIXH], iat_SB_NHm_Neutr[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1515:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( (pc2i->nNumTgInChI > pc2i->nNumTgRevrs && pc2i->nNumTgRevrs == 1 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1564:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( CurrEdges.num_edges, CurChargeEdges.num_edges ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1585:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1614:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1620:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1628:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( (pc2i->nNumTgInChI > pc2i->nNumTgRevrs && pc2i->nNumTgRevrs == 1 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1679:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( CurrEdges.num_edges, CurChargeEdges.num_edges ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1708:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1740:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1746:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1831:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurChargeEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1845:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1904:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1n && vPathStart == v2n || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1922:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c: In function 'ForbidCarbonChargeEdges': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:79:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AllocEdgeList( pCarbonChargeEdges, MAX_NUM_CARBON_CHARGE_EDGES ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:101:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( pCarbonChargeEdges, k, 0 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c: In function 'ForbidNintrogenPlus2BondsInSmallRings': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:138:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( pNplus2BondsEdges, j, 128 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c: In function 'FixLessHydrogenInFormula': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:175:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AllocEdgeList( &NewlyFixedEdges, 2*num_at ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:180:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NewlyFixedEdges, j, 0 )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:186:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NewlyFixedEdges, j, 0 )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:268:71: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( iNV >= 0 && (j = pVA[iNV].nCPlusGroupEdge-1) > 0 && pBNS->edge[j].flow > 0 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1941:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1947:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:284:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NewlyFixedEdges, ieFlower, 0 )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:299:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c: In function 'FixMoreHydrogenInFormula': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:355:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AllocEdgeList( &NewlyFixedEdges, 2*num_at ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:361:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NewlyFixedEdges, j, 0 )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1989:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:367:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NewlyFixedEdges, j, 0 )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2009:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:383:23: warning: operation on 'neigh' may be undefined [-Wsequence-point] at2[neigh=at2[i].neighbor[0]].chem_bonds_valence > at2[neigh].valence ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2014:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_SB_O_Minus, num_DB_O_Neutr ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2036:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:416:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2064:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2070:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c: In function 'FixRemoveExtraTautEndpoints': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:503:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AllocEdgeList( &NewlyFixedEdges, 2*num_at ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:1969:46: warning: variable 'iat_DB_O_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_O_Minus[MAX_DIFF_FIXH], iat_DB_O_Neutr[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:509:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NewlyFixedEdges, j, 0 )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:515:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NewlyFixedEdges, j, 0 )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:578:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c: In function 'FillOutExtraFixedHDataRestr': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:628:43: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !pStruct->nCanon2Atno[i] && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2108:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2131:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2136:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_SB_O_Minus, num_DB_O_Neutr ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2158:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2186:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2192:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2090:46: warning: variable 'iat_DB_O_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_O_Minus[MAX_DIFF_FIXH], iat_DB_O_Neutr[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2233:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2252:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2257:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_DB_N_Neutr, num_SB_O_Minus ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2283:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2313:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2319:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2212:15: warning: variable 'iat_DB_N_Neutr' set but not used [-Wunused-but-set-variable] short iat_DB_N_Neutr[MAX_DIFF_FIXH], iat_SB_O_Minus[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c: In function 'CheckAndRefixStereobonds': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:1451:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &WrongEdges, ne, 0 )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c: In function 'MoveChargeToRemoveCenerpoints': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:1511:109: warning: suggest parentheses around '&&' within '||' [-Wparentheses] int bPossiblyIgnore = pStruct->charge >= 0 && (!pTCGroups->num_tgroups || pStruct->iMobileH == TAUT_NON && pStruct->ti.num_t_groups); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:1530:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AllocEdgeList( &ChargeListAllExcept_DB_O, EDGE_LIST_CLEAR ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:1560:92: warning: suggest parentheses around '&&' within '||' [-Wparentheses] !(pVA[i].nTautGroupEdge || pStruct->iMobileH == TAUT_NON && pStruct->endpoint && pStruct->endpoint[i] ) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:1572:97: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( (at2[neigh].endpoint || pStruct->iMobileH == TAUT_NON && pStruct->endpoint && pStruct->endpoint[neigh]) || at2[neigh].charge > 0 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:1640:48: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pStruct->endpoint && pStruct->endpoint[k] || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2389:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2392:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, eCPlusC, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:1683:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1m && vPathStart == v2m || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2414:58: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:1708:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !bPossiblyIgnore || !num_known_endpoints && !num_wrong_neigh && (num_acceptors_O + num_donors_O) >=3 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2351:47: warning: variable 'icNH2' set but not used [-Wunused-but-set-variable] int iNH2, iatC, iatNH2, icNH2; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2445:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2451:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2476:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pc2i->c2at[i].nValElectr == 5 && pc2i->c2at[i].nPeriodNum == 1) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:1512:39: warning: variable 'DoubleBondAcceptors' set but not used [-Wunused-but-set-variable] S_CHAR MobileChargeNeigh[MAXVAL], DoubleBondAcceptors[MAXVAL], DoubleBondNotONeigh[MAXVAL]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:1504:22: warning: variable 'num_endpoints' set but not used [-Wunused-but-set-variable] int i, j, neigh, num_endpoints, num_success; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c: In function 'SaltBondsToCoordBonds': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:1975:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, ie, num_edges ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:2025:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:2093:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2529:41: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, eCPlusC, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c: In function 'RunBnsRestore1': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2548:74: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:2231:15: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !at2 && !(at2 = (inp_ATOM *) inchi_malloc((num_at + num_deleted_H)*sizeof(at2[0]))) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2488:47: warning: variable 'icNH2' set but not used [-Wunused-but-set-variable] int iNH2, iatC, iatNH2, icNH2, j1, j2; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2592:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2598:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2632:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (pVA[iat].cNumValenceElectrons == 5 && pVA[iat].cPeriodicRowNumber == 1 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2662:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2667:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_SB_Neutr, num_DB_Charged ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c: In function 'AddRemProtonsInRestrStruct': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:2931:25: warning: variable 'tot_num_at' set but not used [-Wunused-but-set-variable] int num_atoms, tot_num_at, num_deleted_H, num_tg, num_changed, num_deleted_components; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2713:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1n && vPathStart == v2n || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c: In function 'AddRemIsoProtonsInRestrStruct': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:3133:45: warning: the address of 'num_prot' will always evaluate as 'true' [-Waddress] for ( iComp = 0; iComp < num_components && num_prot; iComp ++ ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2774:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2780:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2619:15: warning: variable 'iat_SB_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_Neutr[MAX_DIFF_FIXH], iat_DB_Charged[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2820:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pc2i->c2at[i].nValElectr == 5 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:3101:16: warning: variable 'bNormalizationFlags' set but not used [-Wunused-but-set-variable] INCHI_MODE bNormalizationFlags; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:3100:16: warning: variable 'pINChI' set but not used [-Wunused-but-set-variable] INChI *pINChI; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr4.c:3095:25: warning: variable 'tot_num_at' set but not used [-Wunused-but-set-variable] int num_atoms, tot_num_at, num_deleted_H, num_tg, num_changed; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2871:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2874:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, j, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2880:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2886:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, j, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2893:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_SB_N_Neutr, num_DB_O ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2919:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2946:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2952:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:2808:19: warning: variable 'iat_SB_N_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_N_Neutr[MAX_DIFF_FIXH], iat_DB_O[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3047:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3052:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_SB_N_Neutr, num_DB_O ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3078:58: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3105:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3111:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3006:23: warning: variable 'iat_SB_N_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_N_Neutr[MAX_DIFF_FIXH], iat_DB_O[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3128:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( (pc2i->nNumTgInChI <= 1 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3195:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &iat_N_III_List, iat, 32 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3203:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (pVA[iat].cNumValenceElectrons == 5 && pVA[iat].cPeriodicRowNumber == 1 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3211:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &iat_X_List, iat, 32 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3305:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1n && vPathStart == v2n || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3336:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1n && vPathStart == v2n || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3394:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3400:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3413:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pc2i->nNumTgInChI <= 1 && pc2i->nNumTgRevrs > pc2i->nNumTgInChI ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3466:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3471:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_SB_Neutr, num_DB_Charged ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3517:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1n && vPathStart == v2n || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3547:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3553:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3424:15: warning: variable 'iat_SB_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_Neutr[MAX_DIFF_FIXH], iat_DB_Charged[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3600:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3626:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_SB_N_Minus, num_DB_O_Neutr ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3653:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3685:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3691:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3570:46: warning: variable 'iat_DB_O_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_N_Minus[MAX_DIFF_FIXH], iat_DB_O_Neutr[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3721:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pVA[iat].cNumValenceElectrons == 5 && pVA[iat].cPeriodicRowNumber == 1) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3737:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pVA[iat].cNumValenceElectrons == 5 && pVA[iat].cPeriodicRowNumber > 1 ) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3748:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3753:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_SB_Neutr, num_DB_Charged ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3801:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1n && vPathStart == v2n || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3831:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3837:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3709:15: warning: variable 'iat_SB_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_Neutr[MAX_DIFF_FIXH], iat_DB_Charged[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3883:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 0 <= (e1=pVA[iat].nCPlusGroupEdge-1) && !pBNS->edge[e1].flow || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3888:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3901:56: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 0 <= (e1=pVA[iat].nCMinusGroupEdge-1) && !pBNS->edge[e1].flow || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3925:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3956:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:3962:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4005:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, iat, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4055:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4086:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4092:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4141:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4179:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4185:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_SB_O_Minus, num_DB_N ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4206:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4233:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4239:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4114:46: warning: variable 'iat_DB_N' set but not used [-Wunused-but-set-variable] short iat_SB_O_Minus[MAX_DIFF_FIXH], iat_DB_N[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4287:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4353:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( num_SB_O_Minus, num_DB_O ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4375:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4402:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4408:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4263:74: warning: variable 'iat_DB_O' set but not used [-Wunused-but-set-variable] short iat_SB_O_Minus[MAX_DIFF_FIXH], iat_Central[MAX_DIFF_FIXH], iat_DB_O[MAX_DIFF_FIXH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4514:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &OtherSO, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4520:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &SOMinus, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4526:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CentralS, iS, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4533:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4544:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( SOMinus.num_edges, CurrEdges.num_edges ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4565:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4597:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4603:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4663:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4668:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_try = inchi_min( CurrEdges.num_edges, num_DB_O ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4694:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4722:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4728:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4850:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &ChangeableEdges[CHG_SET_O_FIXED], e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:4992:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:5030:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:5036:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.o /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:5239:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:5275:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:5281:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:5351:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bFirst = ( pVA[iat].cNumValenceElectrons == 5 && pc2i->nNumTgInChI == 1 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:5361:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( &ChangeableEdges[CHG_SET_MISSED_TAUT_ALL], e, INC_ADD_EDGE )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:5369:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( &ChangeableEdges[CHG_SET_OTHER_TAUT_ALL], e, INC_ADD_EDGE )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:5372:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( &ChangeableEdges[CHG_SET_AVOID], e, INC_ADD_EDGE )) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:5460:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:5496:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr3.c:5502:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2FHINCHI( pStruct, at2, pVA, pInChI, pc2i ) ) { ^ cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr5.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/atom.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/atom.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/atom.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c: In function 'GetPlusMinusVertex': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:92:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( bCheckForbiddenPlus && NO_VERTEX == vPlusMinus1 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c: In function 'FixMobileHRestoredStructure': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:181:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &TautEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:193:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:202:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, j, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:205:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &NFlowerEdges, j, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:209:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &OtherNFlowerEdges, j, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:234:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:238:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2MHINCHI( pStruct, pTCGroups, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:263:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:269:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2MHINCHI( pStruct, pTCGroups, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:319:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:356:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:402:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:405:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2MHINCHI( pStruct, pTCGroups, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:286:13: warning: variable 'iat_SB_N_III' set but not used [-Wunused-but-set-variable] int iat_SB_N_III[MAX_DIFF_MOBH], iat_DB_N_III[MAX_DIFF_MOBH]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:518:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, eTg, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:551:37: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges2, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:596:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:656:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:659:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2MHINCHI( pStruct, pTCGroups, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:695:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:698:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2MHINCHI( pStruct, pTCGroups, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:429:36: warning: variable 'pvEndp2' set but not used [-Wunused-but-set-variable] BNS_VERTEX *pTg, *pvEndp, *pvEndp2, *pvCent; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:758:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:776:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &CurrEdges2, eTg, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:810:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:847:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:850:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2MHINCHI( pStruct, pTCGroups, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:741:27: warning: variable 'pvEndp' set but not used [-Wunused-but-set-variable] BNS_VERTEX *pTg, *pvEndp; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:913:62: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:941:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:944:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2MHINCHI( pStruct, pTCGroups, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:1061:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &ChangeableEdges[CHG_SET_O_FIXED], e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:1075:26: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( &ChangeableEdges[CHG_SET_WRONG_TAUT_O], e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:1080:26: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( &ChangeableEdges[CHG_SET_WRONG_TAUT_N], e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:1084:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( &ChangeableEdges[CHG_SET_WRONG_TAUT_ALL], e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:1124:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:1162:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:1165:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutCMP2MHINCHI( pStruct, pTCGroups, at2, pVA, pInChI, pc2i ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:486:32: warning: 'peCent2' may be used uninitialized in this function [-Wmaybe-uninitialized] peCent2->flow --; ^ [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/base.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/base.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/base.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:490:80: warning: 'peTg2' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( 1 == peTg->cap - peTg->flow && 0 == peTg2->cap - peTg2->flow && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr5.c:496:59: warning: 'vEndp2' may be used uninitialized in this function [-Wmaybe-uninitialized] pTCGroups->pTCG[itg].tg_set_Minus = vEndp2+1; ^ [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr6.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c: In function 'FixRestoredStructureStereo': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:302:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:387:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:443:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:361:35: warning: variable 'cmpInChI2_Prev' set but not used [-Wunused-but-set-variable] INCHI_MODE cmpInChI_Prev, cmpInChI2_Prev; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:361:20: warning: variable 'cmpInChI_Prev' set but not used [-Wunused-but-set-variable] INCHI_MODE cmpInChI_Prev, cmpInChI2_Prev; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:553:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( &AllChargeEdges, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:559:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( TautMinusEdges+0, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:564:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( TautMinusEdges+1, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:570:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:578:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:616:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:649:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:745:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( &AllChargeEdges, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:751:44: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( bMayBeUnfixed && pVA[j].cNumValenceElectrons == 6 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:754:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( TautMinusEdges+0, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:761:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( TautMinusEdges+1, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:765:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:773:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:812:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:845:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:943:22: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !i1 && !i2 || i1 && i2 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:985:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( &AllChargeEdges, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:992:69: warning: suggest parentheses around '&&' within '||' [-Wparentheses] !(at2[j].endpoint || pStruct->endpoint && pStruct->endpoint[j]) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:996:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( TautMinusEdges+0, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:1004:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:1020:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, e, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:1031:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == vPlusMinus && vPathStart == aC || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:1066:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:1153:22: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !i1 && !i2 || i1 && i2 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:1182:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( &AllChargeEdges, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:1189:69: warning: suggest parentheses around '&&' within '||' [-Wparentheses] !(at2[j].endpoint || pStruct->endpoint && pStruct->endpoint[j]) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:1193:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = AddToEdgeList( TautMinusEdges+0, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:1201:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = AddToEdgeList( &AllChargeEdges, k, INC_ADD_EDGE ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:1229:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ret == 1 && (vPathEnd == v1 && vPathStart == v2 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:1254:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = FillOutExtraFixedHDataRestr( pStruct ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:1140:17: warning: variable 'aC' set but not used [-Wunused-but-set-variable] int aN, aC, i1, i2, ePlus; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'ParseSegmentIsoAtoms': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:5148:16: warning: 'len' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( len != iAtom ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:227:22: warning: 'pe' may be used uninitialized in this function [-Wmaybe-uninitialized] pe->flow --; /* new radical on v2 */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr6.c:1020:16: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( ret = AddToEdgeList( &AllChargeEdges, e, INC_ADD_EDGE ) ) { ^ [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr7.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c: In function 'InChI2Atom': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c:118:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses] OneInput->pInpInChI[iINChI][TAUT_NON][iComponent].nNumberOfAtoms > 0 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c: In function 'MarkDisconectedIdenticalToReconnected': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c:186:28: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( eqM && (!isF1 && !isF2 || eqF ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c: In function 'MergeStructureComponents': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c:256:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_components = pOneInput->nNumComponents[INCHI_REC][TAUT_NON] ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c:260:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_components = pOneInput->nNumComponents[INCHI_REC][TAUT_YES] ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c:264:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_components = pOneInput->nNumComponents[INCHI_BAS][TAUT_NON] ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c:268:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( num_components = pOneInput->nNumComponents[INCHI_BAS][TAUT_YES] ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c:319:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( len = nAtomOffs[k+1] - nAtomOffs[k] ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c:321:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( len2 = nDelHOffs[k+1] - nDelHOffs[k] ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c: In function 'AllInchiToStructure': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c:749:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !iMobileH && !pOneInput->pInpInChI[iInchiRec][iMobileH][k].nNumberOfAtoms || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c: In function 'AddProtonAndIsoHBalanceToMobHStruct': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c:850:67: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( iInchiRec == INCHI_REC || iInchiRec == INCHI_BAS && (k1=pStruct[iInchiRec][TAUT_YES][k].nLink) >= 0 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c: In function 'CompareAllOrigInchiToRevInChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c:1046:33: warning: variable 'iMobileHpStruct' set but not used [-Wunused-but-set-variable] int i, iInchiRec, iMobileH, iMobileHpStruct, num_components, iComponent, ret=0; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c: In function 'CompareOneOrigInchiToRevInChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c:1629:54: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( pStruct->RevInChI.num_components[i] > 1 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c:1651:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( pStruct->RevInChI.pINChI[i][0][TAUT_YES] && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c: In function 'CompareReversedStereoINChI3': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c:1811:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] s1->nBondAtom1[j1] == s2->nBondAtom1[j2] && s1->nBondAtom2[j1] < s2->nBondAtom2[j2]) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c: In function 'AdjustTgroupsToForbiddenEdges2': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:2521:23: warning: 'ev1' may be used uninitialized in this function [-Wmaybe-uninitialized] ev1->flow --; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c:2680:20: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( !e->flow ) { ^ [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichisort.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichisort.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichisort.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichisort.c: In function 'insertions_sort_NeighListBySymmAndCanonRank': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichisort.c:156:19: warning: suggest parentheses around '&&' within '||' [-Wparentheses] !diff && nCanonRank[(int)*i] < nCanonRank[(int)*j]); j=i, i -- ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichisort.c: In function 'CreateNeighListFromLinearCT': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichisort.c:376:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( pp = (NEIGH_LIST *) inchi_calloc((num_atoms+1), sizeof(NEIGH_LIST)) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichisort.c:377:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( pAtList = (AT_NUMB *) inchi_malloc( length*sizeof(*pAtList) ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichisort.c: In function 'CreateNeighList': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichisort.c:468:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( pAtList = (AT_NUMB *) inchi_malloc( length*sizeof(*pAtList) ) ) { ^ [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/bitvec.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/bitvec.cpp [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichister.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichister.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/bond.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/bond.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/bond.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c: In function 'get_z_coord': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:157:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( bFlat = (fabs(z) < ZERO_LENGTH) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c: In function 'Get2DTetrahedralAmbiguity': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:721:60: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( dAngle < 2.0 * ZERO_ANGLE && dAlpha > MIN_ANGLE || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c: In function 'are_3_vect_in_one_plane': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:987:12: warning: variable 'prod' set but not used [-Wunused-but-set-variable] double prod; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c: In function 'are_4at_in_one_plane': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:996:25: warning: variable 'prod' set but not used [-Wunused-but-set-variable] double coord[3][3], prod; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c: In function 'bInpAtomHasRequirdNeigh': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:1173:23: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( NumDbleBonds && NumDbleBonds > num_mult || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c: In function 'bIsSuitableHeteroInpAtom': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:1356:39: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( 1 == at->valence && 1 == num_H || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c: In function 'FixSb0DParities': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:1568:27: warning: variable 'at_i2' set but not used [-Wunused-but-set-variable] int at_i1, at_i2, j; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:1568:20: warning: variable 'at_i1' set but not used [-Wunused-but-set-variable] int at_i1, at_i2, j; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c: In function 'half_stereo_bond_parity': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:1815:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] !(/*(a)*/ 1 == num_nH && !num_iso_H[0] || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c: In function 'can_be_a_stereo_bond_with_isotopic_H': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:2166:61: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( num_wrong_bonds_1 > 1 || num_wrong_bonds_1 && 2 >= at[cur_at].valence ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:2214:69: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( num_wrong_bonds_1 > 1 || num_wrong_bonds_1 && 2 >= at[cur_at].valence ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:2228:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] ( 2 == type_N && !bIsOxide( at, cur_at ) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c: In function 'set_stereo_bonds_parity': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:2572:61: warning: suggest parentheses around '&&' within '||' [-Wparentheses] num_wrong_bonds_2 > 1 || num_wrong_bonds_2 && 2 >= at[at_2].valence || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:2589:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses] ( 2 == type_N && !bIsOxide( at, at_1 ) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:2651:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( num_wrong_bonds_1 > 1 || num_wrong_bonds_1 && 2 >= at[at_1].valence ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:2883:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses] cur_parity_defined && !ATOM_PARITY_WELL_DEF(abs(out_at[at_1].parity)) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:2888:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] next_parity_defined && !ATOM_PARITY_WELL_DEF(abs(out_at[at_2].parity)) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:2916:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses] cur_parity_defined && !ATOM_PARITY_WELL_DEF(abs(out_at[at_1].parity2)) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:2923:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses] next_parity_defined && !ATOM_PARITY_WELL_DEF(abs(out_at[at_2].parity2)) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:2383:15: warning: variable 'next_at_1' set but not used [-Wunused-but-set-variable] int j, k, next_at_1, i_next_at_1, i_next_at_2, at_2, next_at_2, num_stereo_bonds, bFound, bAllene; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c: In function 'set_stereo_atom_parity': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:3402:99: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( fabs(triple_product) > ZERO_FLOAT && (min_sine > MIN_SINE || fabs(min_sine) > ZERO_FLOAT && (n2DTetrahedralAmbiguity & T2D_OKAY ) ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c: In function 'ReconcileAllCmlBondParities': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:3698:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = ReconcileCmlIncidentBondParities( at, i, -1, visited, bDisconnected ) ) { ^ [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/bondtyper.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/bondtyper.cpp [ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichitaut.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c: In function 'AddAtom2DA': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:280:44: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (at->charge < -1 || at->charge == 1 && !at->c_point || at->charge > 1 ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:295:26: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( at->charge <= 0 && at->valence == at->chem_bonds_valence || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:309:26: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( at->charge <= 0 && at->valence + 1 == at->chem_bonds_valence || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c: In function 'RegisterEndPoints': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:547:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( group = EndPoint[i].nGroupNumber ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:647:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( group = EndPoint[i].nGroupNumber ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:797:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( group = at[i].endpoint ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c: In function 'GetNeutralRepsIfNeeded': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:938:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( endpoint = at[rj].endpoint ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:974:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( endpoint = at[ri].endpoint ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c: In function 'FindAccessibleEndPoints': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:1118:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( nTGroupEqu[i] != nTGroupEqu[j] && (i>=nNumDiffTGroupNumbers || j>=nNumDiffTGroupNumbers) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c: In function 'GetChargeType': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:1409:70: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (!CType[i].num_bonds || CType[i].num_bonds==at->valence && at->nNumAtInRingSystem >= 5) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c: In function 'CmpCCandidates': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:1427:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)c1->type - (int)c2->type ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:1429:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)c1->subtype - (int)c2->subtype ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c: In function 'GetSaltChargeType': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:1725:28: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[at_no].radical && at[at_no].radical != RADICAL_SINGLET || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:1727:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[at_no].charge > 0 && !at[at_no].c_point ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:1752:25: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[iC].radical && at[iC].radical != RADICAL_SINGLET || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c: In function 'GetOtherSaltChargeType': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:1886:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( ( eif.cAcceptor && (bond_type == BOND_DOUBLE || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:1896:83: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[centerpoint].chem_bonds_valence == at[centerpoint].valence && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c: In function 'GetOtherSaltType': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:1996:30: warning: suggest parentheses around '&&' within '||' [-Wparentheses] eif.cMoveableCharge && !at[at_no].c_point || !eif.cDonor || eif.cAcceptor ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:2005:38: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[centerpoint].radical && at[centerpoint].radical != RADICAL_SINGLET || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:1970:33: warning: variable 'bond_type' set but not used [-Wunused-but-set-variable] int type, endpoint_valence, bond_type, centerpoint; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c: In function 'MarkSaltChargeGroups2': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:2294:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bAlreadyTested = (i < i1 || i == i1 && j <= j1); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:2295:37: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( bAlreadyTested && (cPAIR(i,j) & ACCEPTOR_PAIR) || !bAlreadyTested ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:2337:37: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( bAlreadyTested && (cPAIR(i,j) & DONOR_PAIR) || !bAlreadyTested ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c: In function 'MergeSaltTautGroups': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:2939:48: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bHasAcidicHydrogen( at, i) && ((s_type=3), (s_subtype = SALT_p_DONOR)) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:2940:48: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bHasAcidicMinus( at, i) && ((s_type=3), (s_subtype = SALT_p_ACCEPTOR)) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:2953:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (s_subtype & SALT_ACCEPTOR) && !at[i].endpoint ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:2987:91: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (!(s_subtype_all & SALT_DONOR_Neg2) || !(s_subtype_all & SALT_DONOR_H2)) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c: In function 'MakeIsotopicHGroup': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:3121:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bHasAcidicHydrogen( at, i) && ((s_type=3), (s_subtype = SALT_p_DONOR)) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:3122:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bHasAcidicMinus( at, i) && ((s_type=3), (s_subtype = SALT_p_ACCEPTOR)) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:3123:48: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bHasOtherExchangableH (at, i) && ((s_type=3), (s_subtype = SALT_DONOR_H)) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:3103:24: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( bHasH && at[i].endpoint || /* tautomeric atoms */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c: In function 'MarkTautomerGroups': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:3279:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( endpoint_valence = nGetEndpointInfo( at, i, &eif1 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:3423:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( endpoint_valence = nGetEndpointInfo_KET( at, i, &eif1 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:3588:30: warning: the address of 'DfsPath' will always evaluate as 'true' [-Waddress] if ( !nDfsPathPos || !DfsPath ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:3734:52: warning: suggest parentheses around '&&' within '||' [-Wparentheses] bond_type != BOND_ALT12NS && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:3237:18: warning: variable 'max_num_t' set but not used [-Wunused-but-set-variable] int *pnum_t, max_num_t, bIgnoreIsotopic; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:3237:10: warning: variable 'pnum_t' set but not used [-Wunused-but-set-variable] int *pnum_t, max_num_t, bIgnoreIsotopic; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:3234:10: warning: variable 'bTautBond' set but not used [-Wunused-but-set-variable] int bTautBond, bNonTautBond, bAltBond; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c: In function 'make_a_copy_of_t_group_info': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:4030:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] (T_GROUP*) inchi_malloc( len * sizeof(t_group_info->t_group[0]))) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:4040:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] (AT_NUMB*) inchi_malloc( len * sizeof(t_group_info->nEndpointAtomNumber[0]))) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:4050:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] (AT_NUMB*) inchi_malloc( len * TGSO_TOTAL_LEN * sizeof(t_group_info->tGroupNumber[0]))) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:4060:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] (AT_NUMB*) inchi_malloc( len * sizeof(t_group_info->nIsotopicEndpointAtomNumber[0]))) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c: In function 'CountTautomerGroups': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:4276:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( j = (int)at[i].endpoint ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichitaut.c:4312:58: warning: suggest parentheses around '&&' within '||' [-Wparentheses] t_group_info->nNumIsotopicEndpoints>1 && (t_group_info->bTautFlagsDone & (TG_FLAG_FOUND_ISOTOPIC_H_DONE | TG_FLAG_FOUND_ISOTOPIC_ATOM_DONE))) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c: In function 'set_stereo_atom_parity': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:469:34: warning: 'first_Up' may be used uninitialized in this function [-Wmaybe-uninitialized] next2 = (first_Up+nNumNeigh - i - 1 ) % nNumNeigh; /* the 2nd before Up sequence */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:340:69: note: 'first_Up' was declared here int i, num_Up, num_Dn, bPrev_Up, cur_len_Up, cur_first_Up, len_Up, first_Up; ^ [ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ikey_base26.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ikey_base26.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c: In function 'InChILine2Data': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:4311:19: warning: 'let1' may be used uninitialized in this function [-Wmaybe-uninitialized] unsigned char let1, let2; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:4414:42: warning: 'let2' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( ( let2 >= 'A') && ( let2 <= 'D') ) /* letter-2 OK */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichiread.c:4311:25: note: 'let2' was declared here unsigned char let1, let2; ^ [ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ikey_dll.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ikey_dll.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ikey_dll.c: In function 'GetINCHIKeyFromINCHI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ikey_dll.c:265:9: warning: "/*" within comment [-Wcomment] /* source string ( was sproto[ncp]='\0'; should be sproto[lenproto]='\0'; ) */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ikey_dll.c:141:8: warning: unused variable 'bytelen' [-Wunused-variable] size_t bytelen = 32; ^ [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/builder.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/builder.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/builder.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c: In function 'set_stereo_parity': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:2629:43: warning: 'i_next_at_2' may be used uninitialized in this function [-Wmaybe-uninitialized] all_pos_2[num_stereo_bonds] = i_next_at_2; /* neighbor to at_2 position */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/ichister.c:2383:39: note: 'i_next_at_2' was declared here int j, k, next_at_1, i_next_at_1, i_next_at_2, at_2, next_at_2, num_stereo_bonds, bFound, bAllene; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/builder.cpp:186:7: warning: multi-line comment [-Wcomment] // \ \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/builder.cpp:188:7: warning: multi-line comment [-Wcomment] // \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/builder.cpp:195:7: warning: multi-line comment [-Wcomment] // \ \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/builder.cpp:197:7: warning: multi-line comment [-Wcomment] // \ ^ [ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/inchi_dll.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/builder.cpp:264:7: warning: multi-line comment [-Wcomment] // \ \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/builder.cpp:1226:5: warning: multi-line comment [-Wcomment] // / / v2 / \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/builder.cpp:1334:9: warning: multi-line comment [-Wcomment] // / \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c: In function 'GetINCHI1': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c:310:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses] && (!inp || inp->num_atoms <= 0 || !inp->atom) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c: In function 'AddMOLfileError': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c:734:48: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( p && (p==pStrErr || *(p-1) == ' ' && (*(p-2) == ';' || *(p-2) == ':' )) && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c:736:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] p[lenMsg] == ';' && p[lenMsg+1] == ' ' || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c:737:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] p[lenMsg-1]==':' && p[lenMsg]==' ') ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c: In function 'SetBondProperties': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c:1231:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( n1+1 < at[a1].valence && is_in_the_list( at[a1].neighbor+n1+1, (AT_NUMB)a2, at[a1].valence-n1-1 ) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c:1251:17: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( p1 && (cBondType != at[a1].bond_type[n1] || at[a1].bond_stereo[n1] != cStereoType1 )|| ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c: In function 'SetAtomAndBondProperties': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c:1335:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( nRadical && at[a1].radical && nRadical != at[a1].radical || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c: In function 'InpAtom0DToInchiAtom': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c:1495:20: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( num_atoms && !outStruct->atom || num_stereo0D > 0 && !outStruct->stereo0D ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c: In function 'GetINCHIfromINCHI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c:1894:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses] && (!inpInChI || !inpInChI->szInChI) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c: In function 'GetStructFromINCHI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c:2205:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses] && (!inpInChI || !inpInChI->szInChI) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c:2098:9: warning: variable 'bStdFormat' set but not used [-Wunused-but-set-variable] int bStdFormat = 0; ^ [ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/inchi_dll_a.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a.c [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/canon.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/canon.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/canon.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a.c: In function 'STDINCHIGEN_Setup': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a.c:171:5: warning: unused variable 'force_std' [-Wunused-variable] int force_std=0; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a.c: In function 'INCHIGEN_Setup': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a.c:395:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses] && (!pInp || pInp->num_atoms <= 0 || !pInp->atom) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a.c: In function 'INCHIGEN_DoNormalization': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a.c:611:22: warning: variable 'ret2a' set but not used [-Wunused-but-set-variable] int ret1a=0, ret2a=0; /* for derivatives and ring-chain */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a.c:611:13: warning: variable 'ret1a' set but not used [-Wunused-but-set-variable] int ret1a=0, ret2a=0; /* for derivatives and ring-chain */ ^ [ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a2.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/inchi_dll_a2.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c: In function 'NormOneStructureINChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:399:18: warning: unused variable 'res' [-Wunused-variable] int res = CreateCompositeNormAtom( composite_norm_data, ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c: In function 'CanonOneStructureINChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:448:15: warning: unused variable 'pINChI_Aux2' [-Wunused-variable] PINChI_Aux2 **pINChI_Aux2 = genctl->pINChI_Aux; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:447:11: warning: unused variable 'pINChI2' [-Wunused-variable] PINChI2 **pINChI2 = genctl->pINChI; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c: In function 'NormOneComponentINChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:647:26: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( k==TAUT_NON && (ip->nMode & REQ_MODE_BASIC ) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:771:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] int cur_is_non_taut = cur_is_in_non_taut && 0 == pINChI[i][TAUT_NON]->lenTautomer || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:787:78: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pINChI[i][j]->nPossibleLocationsOfIsotopicH && pINChI[i][j]->nPossibleLocationsOfIsotopicH[0]>1); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c: In function 'CanonOneComponentINChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:957:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] int cur_is_non_taut = cur_is_in_non_taut && 0 == pINChI[i][TAUT_NON]->lenTautomer || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:973:78: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pINChI[i][j]->nPossibleLocationsOfIsotopicH && pINChI[i][j]->nPossibleLocationsOfIsotopicH[0]>1); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c: In function 'Normalization_step': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:1072:39: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !out_norm_data[TAUT_NON]->at && !out_norm_data[TAUT_YES]->at || !inp_at || ret ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:1369:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (0 < NUM_H_ISOTOPES && t_group_info->tni.nNumRemovedProtonsIsotopic[0] || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:1371:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2 < NUM_H_ISOTOPES && t_group_info->tni.nNumRemovedProtonsIsotopic[2]) ; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:1368:89: warning: suggest parentheses around '&&' within '||' [-Wparentheses] z->s[TAUT_YES].nLenLinearCTTautomer > 0 && t_group_info && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:1374:90: warning: suggest parentheses around '&&' within '||' [-Wparentheses] z->s[TAUT_YES].nLenIsotopicEndpoints > 1 && t_group_info && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c: In function 'Canonicalization_step': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:1590:30: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 0, 0, z->s[TAUT_NON].nLenIsotopic, z->nMode, pBCN ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:1626:30: warning: suggest parentheses around assignment used as truth value [-Wparentheses] z->s[TAUT_YES].nLenIsotopic, z->nMode, pBCN ) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c: In function 'CreateCompositeNormAtom': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:1831:57: warning: suggest parentheses around '&&' within '||' [-Wparentheses] all_inp_norm_data[i][j].at_fixed_bonds && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:1803:74: warning: variable 'nNumRemovedProtons' set but not used [-Wunused-but-set-variable] int i, j, jj, k, n, m, tot_num_at, tot_num_H, cur_num_at, cur_num_H, nNumRemovedProtons; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c: In function 'FillOutINChIReducedWarn': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:2086:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (pCS->LinearCTStereoCarb && pCS->LinearCTStereoCarbInv || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:2273:69: warning: suggest parentheses around '&&' within '||' [-Wparentheses] t_group_info->nNumIsotopicEndpoints>1 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:2337:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nStereoUnmarkMode = UnmarkAllUndefinedUnknownStereo( pINChI->Stereo, nUserMode ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:2361:43: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (pCS->LinearCTIsotopicStereoCarb && pCS->LinearCTIsotopicStereoCarbInv || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c:2498:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nStereoUnmarkMode = UnmarkAllUndefinedUnknownStereo( pINChI->StereoIsotopic, nUserMode ) ) { ^ [ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/inchi_dll_main.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/inchi_dll_main.c [ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/runichi.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/runichi.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c: In function 'SortAndPrintINChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c:769:9: warning: unused variable 'ikflag' [-Wunused-variable] int ikflag = 0; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c:764:33: warning: variable 'iINChI' set but not used [-Wunused-but-set-variable] int j, i, k, k1, ret, iINChI, max_num_components; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c: In function 'CreateOneComponentINChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c:1561:26: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( k==TAUT_NON && (ip->nMode & REQ_MODE_BASIC ) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c:1687:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] int cur_is_non_taut = cur_is_in_non_taut && 0 == pINChI[i][TAUT_NON]->lenTautomer || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c:1704:78: warning: suggest parentheses around '&&' within '||' [-Wparentheses] pINChI[i][j]->nPossibleLocationsOfIsotopicH && pINChI[i][j]->nPossibleLocationsOfIsotopicH[0]>1); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c: In function 'PreprocessOneStructure': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c:2406:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( i = ReconcileAllCmlBondParities( prep_inp_data->at, prep_inp_data->num_inp_atoms, 0 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c:2437:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( i = bNumHeterAtomHasIsotopicH( prep_inp_data->at, prep_inp_data->num_inp_atoms ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c:2531:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( i = ReconcileAllCmlBondParities( prep_inp_data->at, prep_inp_data->num_inp_atoms, 1 ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c: In function 'ProcessOneStructure': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c:2815:26: warning: variable 'ret2a' set but not used [-Wunused-but-set-variable] int ret1a=0, ret2a=0; /* for derivatives and ring-chain */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c:2815:17: warning: variable 'ret1a' set but not used [-Wunused-but-set-variable] int ret1a=0, ret2a=0; /* for derivatives and ring-chain */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c:2758:36: warning: variable 'maxINChI' set but not used [-Wunused-but-set-variable] int nRet = 0, nRet1, i, k, maxINChI=0; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c: In function 'CreateOneStructureINChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/runichi.c:3421:85: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( iINChI == INCHI_REC && (!ip->bDisplay && !ip->bDisplayCompositeResults && !(ip->bCompareComponents & CMP_COMPONENTS) || ^ [ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/sha2.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/sha2.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/sha2.c [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/chains.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/chains.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/chains.cpp [ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/strutil.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/strutil.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c: In function 'fix_odd_things': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:476:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] for ( b = el; e = strchr( b, ';'); b = e+1 ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:513:29: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[i1].radical && RADICAL_SINGLET != at[i1].radical || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:138:20: warning: variable 'el_number_O' set but not used [-Wunused-but-set-variable] static int el_number_O; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:135:20: warning: variable 'el_number_P' set but not used [-Wunused-but-set-variable] static int el_number_P; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c: In function 'nFindOneOM': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:792:18: warning: variable 'n_OM_best' set but not used [-Wunused-but-set-variable] int i, n_OM, n_OM_best, best_value, cur_value, diff; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c: In function 'remove_ion_pairs': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:915:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] for ( b = el; e = strchr( b, ';'); b = e+1 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:927:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( p = (char*)memchr( en, a->el_number, ne) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:1094:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !type || 2 <= type && type <= 9 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:1347:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !type || 10 <= type && type <= 15 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:1419:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( !type || 12 == type && 0 < num_N_plus && 0 < num_N_minus ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/canon.cpp: In constructor 'OpenBabel::CanonicalLabelsImpl::State::State(const std::vector&, const OpenBabel::OBBitVec&, std::vector&, std::vector&, OpenBabel::CanonicalLabelsImpl::Orbits&, OpenBabel::OBBitVec&, bool)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/canon.cpp:710:34: warning: 'OpenBabel::CanonicalLabelsImpl::State::stereoCenters' will be initialized after [-Wreorder] std::vector &stereoCenters; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:1677:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( (!type || 18 == type) && (0 < num_C_plus && 0 < num_C_minus || 0 < num_C_II) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:1699:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( v[k] == 4 || v[k] == 3 && at[i].bond_type[j[k]] == BOND_TYPE_SINGLE ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/canon.cpp:704:18: warning: 'const bool OpenBabel::CanonicalLabelsImpl::State::onlyOne' [-Wreorder] const bool onlyOne; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:1703:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( v[k] == 2 || v[k] == 3 && at[i].bond_type[j[k]] == BOND_TYPE_DOUBLE ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c: In function 'RemoveInpAtBond': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:1808:74: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( k == at->sb_ord[m] || k == at->sn_ord[m] && val < 2 && ATOM_PARITY_WELL_DEF(at->sb_parity[m]) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/canon.cpp:685:7: warning: when initialized here [-Wreorder] State(const std::vector &_symmetry_classes, ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:1774:27: warning: variable 'k2' set but not used [-Wunused-but-set-variable] int i, j, m, m2, k2; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c: In function 'DisconnectInpAtBond': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:1962:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( component = at[iat].component ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:1965:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( component = at[neigh].component ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c: In function 'bIsAmmoniumSalt': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:2009:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[neigh].charge && (at[neigh].el_number != el_number_O || at[neigh].charge + at[i].charge) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:2010:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[neigh].radical && at[neigh].radical != RADICAL_SINGLET ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:2029:37: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[iC].radical && at[iC].radical != RADICAL_SINGLET /*|| ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c: In function 'bIsMetalSalt': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:2184:23: warning: suggest parentheses around '&&' within '||' [-Wparentheses] ( (type & 1) && val == get_el_valence( at[i].el_number, 0, 0 ) || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:2183:28: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( at[i].charge == 0 && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:2214:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[iO].radical && at[iO].radical != RADICAL_SINGLET || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:2224:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[iC].radical && at[iC].radical != RADICAL_SINGLET || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c: In function 'DisconnectSalts': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:2305:28: warning: suggest parentheses around '&&' within '||' [-Wparentheses] at[i].radical && at[i].radical != RADICAL_SINGLET /* radical */ ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c: In function 'DisconnectOneLigand': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:2686:23: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( i && i != 2 && i != 3 || ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c: In function 'bHeteroAtomMayHaveXchgIsoH': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3123:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( abs(at->charge) > 1 || at->radical && RADICAL_SINGLET != at->radical ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3169:30: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( at2->charge && at->charge || (at2->radical && RADICAL_SINGLET != at2->radical ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3104:76: warning: variable 'cur_num_iso_H' set but not used [-Wunused-but-set-variable] int j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, cur_num_iso_H; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3104:34: warning: variable 'is_N' set but not used [-Wunused-but-set-variable] int j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, cur_num_iso_H; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3104:25: warning: variable 'is_Cl' set but not used [-Wunused-but-set-variable] int j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, cur_num_iso_H; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3104:17: warning: variable 'is_O' set but not used [-Wunused-but-set-variable] int j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, cur_num_iso_H; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c: In function 'bNumHeterAtomHasIsotopicH': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3208:49: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( abs(at->charge) > 1 || at->radical && RADICAL_SINGLET != at->radical ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3256:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( at2->charge && at->charge || (at2->radical && RADICAL_SINGLET != at2->radical ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3181:37: warning: variable 'is_N' set but not used [-Wunused-but-set-variable] int i, j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, num_iso_H, cur_num_iso_H, num_iso_atoms; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3181:28: warning: variable 'is_Cl' set but not used [-Wunused-but-set-variable] int i, j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, num_iso_H, cur_num_iso_H, num_iso_atoms; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3181:20: warning: variable 'is_O' set but not used [-Wunused-but-set-variable] int i, j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, num_iso_H, cur_num_iso_H, num_iso_atoms; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c: In function 'cmp_components': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3288:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( ret = (int)n2 - (int)n1 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c: In function 'Free_INChI': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3577:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( pINChI = *ppINChI ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c: In function 'WriteOrigAtomDataToSDfile': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4271:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( bAtomNeedsAlias = ALIASED_AT(i) ) { /* has isotopic implicit D or T; ignoring pure 1H */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3821:55: note: in expansion of macro 'IS_DEUTERIUM' #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4281:38: note: in expansion of macro 'ANY_ISO' nNumIsoLines += ANY_ISO(i, bAtomsDT); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3821:75: note: in expansion of macro 'IS_TRITIUM' #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4281:38: note: in expansion of macro 'ANY_ISO' nNumIsoLines += ANY_ISO(i, bAtomsDT); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3822:55: note: in expansion of macro 'IS_DEUTERIUM' (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4281:38: note: in expansion of macro 'ANY_ISO' nNumIsoLines += ANY_ISO(i, bAtomsDT); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3822:75: note: in expansion of macro 'IS_TRITIUM' (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4281:38: note: in expansion of macro 'ANY_ISO' nNumIsoLines += ANY_ISO(i, bAtomsDT); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4317:26: note: in expansion of macro 'IS_DEUTERIUM' int nIsotopeH = IS_DEUTERIUM(i)? 1 : IS_TRITIUM(i)? 2 : 0; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4317:47: note: in expansion of macro 'IS_TRITIUM' int nIsotopeH = IS_DEUTERIUM(i)? 1 : IS_TRITIUM(i)? 2 : 0; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3821:55: note: in expansion of macro 'IS_DEUTERIUM' #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3826:29: note: in expansion of macro 'ANY_ISO' #define NORMAL_ISO(i, X) (ANY_ISO(i, X) && !ABNORMAL_ISO(i)) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4354:14: note: in expansion of macro 'NORMAL_ISO' if ( NORMAL_ISO(i, bAtomsDT) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3821:75: note: in expansion of macro 'IS_TRITIUM' #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3826:29: note: in expansion of macro 'ANY_ISO' #define NORMAL_ISO(i, X) (ANY_ISO(i, X) && !ABNORMAL_ISO(i)) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4354:14: note: in expansion of macro 'NORMAL_ISO' if ( NORMAL_ISO(i, bAtomsDT) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3822:55: note: in expansion of macro 'IS_DEUTERIUM' (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3826:29: note: in expansion of macro 'ANY_ISO' #define NORMAL_ISO(i, X) (ANY_ISO(i, X) && !ABNORMAL_ISO(i)) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4354:14: note: in expansion of macro 'NORMAL_ISO' if ( NORMAL_ISO(i, bAtomsDT) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3822:75: note: in expansion of macro 'IS_TRITIUM' (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3826:29: note: in expansion of macro 'ANY_ISO' #define NORMAL_ISO(i, X) (ANY_ISO(i, X) && !ABNORMAL_ISO(i)) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4354:14: note: in expansion of macro 'NORMAL_ISO' if ( NORMAL_ISO(i, bAtomsDT) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4390:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( k=at[i].bond_stereo[j] ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4467:39: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( i == num_atoms-1 && num_m || num_m == 8 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4489:39: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( i == num_atoms-1 && num_m || num_m == 8 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3821:55: note: in expansion of macro 'IS_DEUTERIUM' #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4521:22: note: in expansion of macro 'ANY_ISO' if ( ANY_ISO(i, bAtomsDT) && !ALIASED_AT(i) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3821:75: note: in expansion of macro 'IS_TRITIUM' #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4521:22: note: in expansion of macro 'ANY_ISO' if ( ANY_ISO(i, bAtomsDT) && !ALIASED_AT(i) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3822:55: note: in expansion of macro 'IS_DEUTERIUM' (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4521:22: note: in expansion of macro 'ANY_ISO' if ( ANY_ISO(i, bAtomsDT) && !ALIASED_AT(i) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3822:75: note: in expansion of macro 'IS_TRITIUM' (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4521:22: note: in expansion of macro 'ANY_ISO' if ( ANY_ISO(i, bAtomsDT) && !ALIASED_AT(i) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4522:26: note: in expansion of macro 'IS_DEUTERIUM' if ( IS_DEUTERIUM(i) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4526:26: note: in expansion of macro 'IS_TRITIUM' if ( IS_TRITIUM(i) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4541:39: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ( i == num_atoms-1 && num_m || num_m == 8 ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4212:9: warning: variable 'bNext' set but not used [-Wunused-but-set-variable] int bNext /*, s*/; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:4207:9: warning: variable 'flag_bad_charge' set but not used [-Wunused-but-set-variable] int flag_bad_charge=0, flag_bad_iso = 0; ^ [ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/util.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/util.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/util.c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/util.c: In function 'extract_ChargeRadical': [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/chargemodel.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/chargemodel.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/util.c:428:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while ( q = strpbrk( p, "+-^" ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/util.c:436:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( nSign = (int)strtol( q+k, &r, 10 ) ) { /* fixed 12-5-2001 */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/util.c: In function 'get_num_H': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/util.c:556:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( val = ElData[el_number].cValence[NEUTRAL_STATE+charge][0] ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/util.c:532:46: warning: variable 'el_number_O' set but not used [-Wunused-but-set-variable] static int el_number_N = 0, el_number_S, el_number_O, el_number_C; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/util.c: In function 'mystrncpy': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/util.c:743:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if ( p = (const char*)memchr(source, 0, maxlen) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/util.c: In function 'nBondsValToMetal': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/util.c:782:12: warning: variable 'neigh' set but not used [-Wunused-but-set-variable] int i, neigh, bond_type, nVal2Metal = 0; ^ [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/chiral.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/chiral.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/chiral.cpp [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/data.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/data.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/data.cpp [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/descriptor.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/descriptor.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c: In function 'fix_odd_things': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi/strutil.c:603:28: warning: 'c' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( c == neigh && at[i2].bond_type[ineigh] == BOND_TYPE_SINGLE ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/chains.cpp: In member function 'void OpenBabel::OBChainsParser::ConstrainBackbone(OpenBabel::OBMol&, OpenBabel::Template*, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/chains.cpp:1271:68: warning: 'nd' may be used uninitialized in this function [-Wmaybe-uninitialized] result = Match4Constraints(pep,na,nb,nc,nd); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/chains.cpp:1273:65: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] result = Match3Constraints(pep,na,nb,nc); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/chains.cpp:1275:62: warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] result = Match2Constraints(pep,na,nb); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/chains.cpp:1277:61: warning: 'na' may be used uninitialized in this function [-Wmaybe-uninitialized] result = MatchConstraint(na,pep->n1); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/chains.cpp: In member function 'void OpenBabel::OBChainsParser::TracePeptideChain(OpenBabel::OBMol&, unsigned int, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/chains.cpp:1356:24: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] unsigned int na,nb,nc; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/chains.cpp:1441:46: warning: 'na' may be used uninitialized in this function [-Wmaybe-uninitialized] TracePeptideChain(mol,na,r); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/chains.cpp:1447:46: warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] TracePeptideChain(mol,nb,r); ^ [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/fingerprint.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/fingerprint.cpp [ 11%] Linking C shared library ../../../lib64/libinchi.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchi.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -O2 -g -DNDEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,libinchi.so.0 -o ../../../lib64/libinchi.so.0.4.1 CMakeFiles/inchi.dir/ichi_bns.o CMakeFiles/inchi.dir/ichi_io.o CMakeFiles/inchi.dir/ichican2.o CMakeFiles/inchi.dir/ichicano.o CMakeFiles/inchi.dir/ichicans.o CMakeFiles/inchi.dir/ichiisot.o CMakeFiles/inchi.dir/ichilnct.o CMakeFiles/inchi.dir/ichimak2.o CMakeFiles/inchi.dir/ichimake.o CMakeFiles/inchi.dir/ichimap1.o CMakeFiles/inchi.dir/ichimap2.o CMakeFiles/inchi.dir/ichimap4.o CMakeFiles/inchi.dir/ichinorm.o CMakeFiles/inchi.dir/ichiparm.o CMakeFiles/inchi.dir/ichiprt1.o CMakeFiles/inchi.dir/ichiprt2.o CMakeFiles/inchi.dir/ichiprt3.o CMakeFiles/inchi.dir/ichiqueu.o CMakeFiles/inchi.dir/ichiread.o CMakeFiles/inchi.dir/ichiring.o CMakeFiles/inchi.dir/ichirvr1.o CMakeFiles/inchi.dir/ichirvr2.o CMakeFiles/inchi.dir/ichirvr3.o CMakeFiles/inchi.dir/ichirvr4.o CMakeFiles/inchi.dir/ichirvr5.o CMakeFiles/inchi.dir/ichirvr6.o CMakeFiles/inchi.dir/ichirvr7.o CMakeFiles/inchi.dir/ichisort.o CMakeFiles/inchi.dir/ichister.o CMakeFiles/inchi.dir/ichitaut.o CMakeFiles/inchi.dir/ikey_base26.o CMakeFiles/inchi.dir/ikey_dll.o CMakeFiles/inchi.dir/inchi_dll.o CMakeFiles/inchi.dir/inchi_dll_a.o CMakeFiles/inchi.dir/inchi_dll_a2.o CMakeFiles/inchi.dir/inchi_dll_main.o CMakeFiles/inchi.dir/runichi.o CMakeFiles/inchi.dir/sha2.o CMakeFiles/inchi.dir/strutil.o CMakeFiles/inchi.dir/util.o -lm -ldl -lz -lcairo -lc /usr/src/RPM/BUILD/openbabel-2.3.2/src/builder.cpp: In member function 'bool OpenBabel::OBBuilder::Build(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/builder.cpp:1080:43: warning: 'match_idx' may be used uninitialized in this function [-Wmaybe-uninitialized] match_indices[0] = match_idx; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/fingerprint.cpp: In member function 'bool OpenBabel::FastSearch::Find(OpenBabel::OBBase*, std::vector&, unsigned int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/fingerprint.cpp:161:53: warning: operation on 'ppat' may be undefined [-Wsequence-point] if ( (a=((*ppat) & (*p++)) ^ (*ppat++)) ) break; ^ cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/libinchi && /usr/bin/cmake -E cmake_symlink_library ../../../lib64/libinchi.so.0.4.1 ../../../lib64/libinchi.so.0 ../../../lib64/libinchi.so make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 11%] Built target inchi [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/forcefield.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/format.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/format.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/format.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp:427:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (_ignoreAtom == a) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp:429:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (_ignoreAtom == b) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp:439:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (_ignoreAtom == b) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp:449:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (_ignoreAtom == d) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintType(int) const': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp:701:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (index >= _constraints.size()) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp: In member function 'double OpenBabel::OBFFConstraints::GetConstraintValue(int) const': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp:709:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (index >= _constraints.size()) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp:717:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (index >= _constraints.size()) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp:725:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (index >= _constraints.size()) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp:733:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (index >= _constraints.size()) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp:741:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (index >= _constraints.size()) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp: In function 'void OpenBabel::Reweight(std::vector >&, std::vector, double)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp:1462:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (j == rotorKey[i]) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp:1481:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (j == rotorKey[i]) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp: In member function 'void OpenBabel::OBForceField::DistanceGeometry()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefield.cpp:1854:26: warning: variable 'l_bc' set but not used [-Wunused-but-set-variable] double l_ab, l_bc, l_ac; // lower limits ^ [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/generic.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/generic.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/generic.cpp [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/graphsym.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/graphsym.cpp [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/grid.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/grid.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/grid.cpp [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/griddata.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/griddata.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/generic.cpp: In member function 'void OpenBabel::OBOrbitalData::LoadClosedShellOrbitals(std::vector, std::vector >, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/generic.cpp:1424:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (alphaHOMO > energies.size()) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/generic.cpp:1440:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (i < alphaHOMO) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/generic.cpp: In member function 'void OpenBabel::OBOrbitalData::LoadAlphaOrbitals(std::vector, std::vector >, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/generic.cpp:1455:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (alphaHOMO > energies.size()) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/generic.cpp:1469:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (i < alphaHOMO) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/generic.cpp: In member function 'void OpenBabel::OBOrbitalData::LoadBetaOrbitals(std::vector, std::vector >, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/generic.cpp:1484:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (betaHOMO > energies.size()) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/generic.cpp:1498:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (i < betaHOMO) ^ [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/isomorphism.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/isomorphism.cpp [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/kekulize.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/kekulize.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/kekulize.cpp: In function 'bool OpenBabel::expandKekulize(OpenBabel::OBMol*, int, std::vector&, std::vector&, OpenBabel::Kekulize::Timeout&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/kekulize.cpp:719:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (bond_idx >= bondState.size()) ^ [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/locale.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/locale.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/locale.cpp [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/matrix.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/matrix.cpp [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/mcdlutil.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:421:5: warning: multi-line comment [-Wcomment] // / \ ^ [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/molchrg.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/molchrg.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp: In member function 'bool OpenBabel::TSimpleMolecule::threeBondResolve(int, int, double&, double&, OpenBabel::neighbourlist*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:962:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; i&, int, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:1465:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j=0; j&, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:2003:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j=0; j0) atDef=atDef+1; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:2013:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (cN>=0) if (maxAtDef==atomCycle[cN].size()) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:2028:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j=1; j&, std::vector, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:2101:98: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (baseCycle>0) for (i=0; i, std::vector, int, int&, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:2232:67: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j=0; j*>)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:3031:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:3031:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::makeEquivalentList(std::vector&, bool)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:3195:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j=0; jsize(); j++) (*lL)[i]=0; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:3203:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; i&, std::vector)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:3229:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (l <= maxValues[i]) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp: In member function 'int OpenBabel::TSimpleMolecule::correctOverlapped()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:3278:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; i*, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:3436:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; isize(); i++) if (i != index) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp: In member function 'void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4112:19: warning: variable 'nBondsOld' set but not used [-Wunused-but-set-variable] int nAtomsOld,nBondsOld,naDef1,naDef,i; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4113:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] bool test,test1,test2; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4113:15: warning: variable 'test1' set but not used [-Wunused-but-set-variable] bool test,test1,test2; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4113:21: warning: variable 'test2' set but not used [-Wunused-but-set-variable] bool test,test1,test2; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4115:40: warning: variable 'xCenter' set but not used [-Wunused-but-set-variable] double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4115:48: warning: variable 'yCenter' set but not used [-Wunused-but-set-variable] double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp: In member function 'OpenBabel::TEditedMolecule* OpenBabel::TEditedMolecule::extractFragment(int, std::vector*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4306:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4306:71: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4311:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; i*, std::vector*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4532:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (qEnumerator->size() != nAtoms()) qEnumerator->resize(nAtoms()); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4533:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; isize(); i++) (*qEnumerator)[i]=i; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4562:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j=0; jsize(); j++) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp: In member function 'bool OpenBabel::TEditedMolecule::fragmentSearch(OpenBabel::TEditedMolecule*, std::vector*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4749:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (molecule1->listarSize()>aSTested.size()) aSTested.resize(molecule1->listarSize()); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4750:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (molecule1->listarSize()>bSTested.size()) bSTested.resize(molecule1->listarSize()); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4751:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (molecule1->listarSize()>queryQHydr.size()) queryQHydr.resize(molecule1->listarSize()); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4752:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (molecule1->listarSize()>queryAQTested.size()) queryAQTested.resize(molecule1->listarSize()); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4753:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (molecule1->listarSize()>queryBQTested.size()) queryBQTested.resize(molecule1->listarSize()); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4754:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (molecule1->listarSize()>queryCurrentAssignment.size()) queryCurrentAssignment.resize(molecule1->listarSize()); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4755:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (this->listarSize()>queryAQTested.size()) queryAQTested.resize(this->listarSize()); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4736:9: warning: variable 'cycleNumber' set but not used [-Wunused-but-set-variable] int cycleNumber; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp: In member function 'bool OpenBabel::TemplateRedraw::internalBondsPresent(OpenBabel::TEditedMolecule*, OpenBabel::TSimpleMolecule*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:5101:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; inAtoms(); i++) aList[mQuery->queryAQTested[i]]=1; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:5102:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; inBonds(); i++) bList[mQuery->queryBQTested[i]]=1; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp: In member function 'void OpenBabel::TemplateRedraw::rotateBondVertically(OpenBabel::TSimpleMolecule*, std::vector, int, double, double, double&, double&, double&, double&, double&, double&, int&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:5132:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; i*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:5211:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; isize(); i++) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:5228:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; i*, OpenBabel::PartFragmentDefinition&, double)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:5299:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; isize(); i++) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:5307:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; isize(); i++) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:5323:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; isize(); i++) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp: In member function 'int OpenBabel::TemplateRedraw::coordinatesPrepare(OpenBabel::TEditedMolecule&, int, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:5562:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=kk; ifragmentSearch(&sm,NULL)) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:5610:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; i= instring.length()) result=-1; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp: In function 'std::__cxx11::string OpenBabel::getAtomMCDL(OpenBabel::OBMol*, int, std::vector, std::vector, std::vector, std::vector)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:6444:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j=0; j 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:6491:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) n++; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:6497:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:6507:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-1; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:6510:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-2; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:6521:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (k == 1) for (i=0; i 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j, std::vector, int (*)[4], std::vector, std::vector)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:6784:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:6786:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j=i+1; j 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j&, std::vector&, std::vector&, std::vector, std::vector, int, int, std::__cxx11::string)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:6901:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n1 < (astereo.length()-1)) astereo=astereo.substr(n1+1); else astereo=""; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp: In function 'bool OpenBabel::restoreDoubleBonds(OpenBabel::TEditedMolecule&, bool)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:6980:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:6980:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:6982:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:6982:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:6951:10: warning: variable 'hasAcyclic' set but not used [-Wunused-but-set-variable] bool hasAcyclic=false; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp: In function 'void OpenBabel::implementBondStereo(std::vector, std::vector, std::vector&, std::vector&, int, int, std::__cxx11::string)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:7071:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n1 < (bstereo.length()-1)) bstereo=bstereo.substr(n1+1); else bstereo=""; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp: In function 'int OpenBabel::groupRedraw(OpenBabel::OBMol*, int, int, bool)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:7206:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i=0; i&, int&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:7256:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n='0') && (value.at(n)<='9')) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:7259:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:7280:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n='0') && (value.at(n)<='9')) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:7283:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; ^ [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/mol.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/mol.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/mol.cpp [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/obconversion.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/obconversion.cpp [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/oberror.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/oberror.cpp [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/obiter.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/obiter.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/mol.cpp: In member function 'OpenBabel::OBAtom* OpenBabel::OBMol::NewAtom(long unsigned int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mol.cpp:1657:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (vb->GetBgn() > _natoms || vb->GetEnd() > _natoms) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mol.cpp:1657:58: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (vb->GetBgn() > _natoms || vb->GetEnd() > _natoms) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mol.cpp: In member function 'bool OpenBabel::OBMol::AddAtom(OpenBabel::OBAtom&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mol.cpp:1782:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (vb->GetBgn() > _natoms || vb->GetEnd() > _natoms) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mol.cpp:1782:58: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (vb->GetBgn() > _natoms || vb->GetEnd() > _natoms) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mol.cpp: In member function 'bool OpenBabel::OBMol::StripSalts(int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mol.cpp:1852:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (i->size() < threshold || (threshold == 0 && i != max)) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/mol.cpp: In member function 'void OpenBabel::OBMol::SetConformer(int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mol.cpp:4039:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (i >= 0 && i < _vconf.size()) ^ In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/src/obconversion.cpp:47:0: /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/obconversion.h: In constructor 'OpenBabel::OBConversion::OBConversion(std::istream*, std::ostream*)': /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/obconversion.h:382:21: warning: 'OpenBabel::OBConversion::pAuxConv' will be initialized after [-Wreorder] OBConversion* pAuxConv;///::seekoff(std::streamoff, std::ios_base::seekdir, std::ios_base::openmode) [with charT = char; traits = std::char_traits; std::streampos = std::fpos<__mbstate_t>; std::streamoff = long int; std::ios_base::seekdir = std::_Ios_Seekdir; std::ios_base::openmode = std::_Ios_Openmode]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/obconversion.cpp:1749:1: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/zipstreamimpl.h:400:8: warning: variable 'ch' set but not used [-Wunused-but-set-variable] char ch; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/zipstreamimpl.h: In instantiation of 'std::streampos zlib_stream::basic_unzip_streambuf::seekpos(std::streampos, std::ios_base::openmode) [with charT = char; traits = std::char_traits; std::streampos = std::fpos<__mbstate_t>; std::ios_base::openmode = std::_Ios_Openmode]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/obconversion.cpp:1749:1: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/zipstreamimpl.h:453:8: warning: variable 'ch' set but not used [-Wunused-but-set-variable] char ch; ^ [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/obutil.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/obutil.cpp [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/op.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/op.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/op.cpp [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/parsmart.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/parsmart.cpp [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/patty.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/patty.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/patty.cpp [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/phmodel.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/phmodel.cpp [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/plugin.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/plugin.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/obconversion.cpp: In member function 'int OpenBabel::OBConversion::Convert(std::istream*, std::ostream*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/obconversion.cpp:455:10: warning: 'zIn' may be used uninitialized in this function [-Wmaybe-uninitialized] delete zIn; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/patty.cpp: In member function 'int OpenBabel::patty::type_to_int(const string&, bool)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/patty.cpp:277:18: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized] return(result); ^ [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/pointgroup.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::establish_pairs(OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:257:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 0 ; i < _mol->NumAtoms() ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:258:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( elem->transform[i] >= _mol->NumAtoms() ){ /* No symmetric atom yet */ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:265:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( j = 0 ; j < _mol->NumAtoms() ; j++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::check_transform_order(OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:299:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 0 ; i < _mol->NumAtoms() ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::same_transform(OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT*, OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:338:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 0, code = 1 ; i < _mol->NumAtoms() ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:345:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 0 ; i < _mol->NumAtoms() ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp: In member function 'OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT* OpenBabel::PointGroupPrivate::alloc_symmetry_element()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:370:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 0 ; i < _mol->NumAtoms() ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::check_transform_quality(OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:393:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 0, max_r = 0 ; i < _mol->NumAtoms() ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp: In member function 'double OpenBabel::PointGroupPrivate::eval_optimization_target_function(OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT*, int*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:447:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 0, target = maxr = 0 ; i < _mol->NumAtoms() ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp: In member function 'OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT* OpenBabel::PointGroupPrivate::init_ultimate_plane()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:737:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 1 ; i < _mol->NumAtoms() ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:786:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( k = 0 ; k < _mol->NumAtoms() ; k++ ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp: In member function 'OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT* OpenBabel::PointGroupPrivate::init_ultimate_axis()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:908:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 0 ; i < _mol->NumAtoms() ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:943:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( k = 0 ; k < _mol->NumAtoms() ; k++ ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp: In member function 'OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT* OpenBabel::PointGroupPrivate::init_axis_parameters(double*, double*, double*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1121:14: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] else if( axis->direction[1] <= 0 ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1118:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] if( axis->direction[0] <= 0 ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp: In member function 'void OpenBabel::PointGroupPrivate::find_center_of_something()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1292:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 0 ; i < _mol->NumAtoms() ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1306:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 0 ; i < _mol->NumAtoms() ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp: In member function 'void OpenBabel::PointGroupPrivate::find_planes()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1333:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 1 ; i < _mol->NumAtoms() ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp: In member function 'void OpenBabel::PointGroupPrivate::find_c2_axes()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1392:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 1 ; i < _mol->NumAtoms() ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1426:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( k = 0 ; k < _mol->NumAtoms() ; k++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1440:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( k = 0 ; k < _mol->NumAtoms() ; k++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1446:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( k = 0 ; k < _mol->NumAtoms() ; k++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1448:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( l = 0 ; l < _mol->NumAtoms() ; l++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp: In member function 'void OpenBabel::PointGroupPrivate::find_higher_axes()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1482:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 0 ; i < _mol->NumAtoms() ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1483:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( j = i + 1 ; j < _mol->NumAtoms() ; j++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1488:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( k = 0 ; k < _mol->NumAtoms() ; k++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp: In member function 'void OpenBabel::PointGroupPrivate::find_improper_axes()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1514:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 0 ; i < _mol->NumAtoms() ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1515:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( j = i + 1 ; j < _mol->NumAtoms() ; j++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1516:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( k = 0 ; k < _mol->NumAtoms() ; k++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp: In member function 'const char* OpenBabel::PointGroupPrivate::identify_point_group()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1770:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 0 ; i < PointGroupsCount ; i++ ){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/pointgroup.cpp:1783:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 0 ; i < PointGroupsCount ; i++ ){ ^ [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/query.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/query.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/query.cpp [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/rand.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/rand.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/parsmart.cpp: In function 'int OpenBabel::CreateAtom(OpenBabel::Pattern*, OpenBabel::AtomExpr*, int, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/parsmart.cpp:459:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] int index,size; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/parsmart.cpp: In function 'int OpenBabel::CreateBond(OpenBabel::Pattern*, OpenBabel::BondExpr*, int, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/parsmart.cpp:491:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] int index,size; ^ [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/residue.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/residue.cpp [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/ring.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ring.cpp [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/rotamer.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/rotamer.cpp [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/rotor.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/rotor.cpp [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/spectrophore.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/spectrophore.cpp [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/tokenst.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/tokenst.cpp [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/transform.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/transform.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/transform.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/src/spectrophore.cpp:25:0: /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/spectrophore.h: In constructor 'OpenBabel::OBSpectrophore::OBSpectrophore()': /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/spectrophore.h:566:31: warning: 'OpenBabel::OBSpectrophore::_numberOfProbes' will be initialized after [-Wreorder] unsigned int _numberOfProbes; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/spectrophore.h:560:31: warning: 'double** OpenBabel::OBSpectrophore::_property' [-Wreorder] double** _property; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/spectrophore.cpp:31:1: warning: when initialized here [-Wreorder] OBSpectrophore::OBSpectrophore(void) ^ In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/src/spectrophore.cpp:25:0: /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/spectrophore.h: In copy constructor 'OpenBabel::OBSpectrophore::OBSpectrophore(const OpenBabel::OBSpectrophore&)': /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/spectrophore.h:567:31: warning: 'OpenBabel::OBSpectrophore::_spectro' will be initialized after [-Wreorder] std::vector _spectro; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/spectrophore.h:560:31: warning: 'double** OpenBabel::OBSpectrophore::_property' [-Wreorder] double** _property; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/spectrophore.cpp:48:1: warning: when initialized here [-Wreorder] OBSpectrophore::OBSpectrophore(const OBSpectrophore& s) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/spectrophore.cpp: In member function 'void OpenBabel::OBSpectrophore::_luSolve(double**, std::vector&, double*, unsigned int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/spectrophore.cpp:1903:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (k = 0; k < i; ++k) ^ [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/typer.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/typer.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/typer.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/transform.cpp: In member function 'virtual OpenBabel::OBBase* OpenBabel::OBMol::DoTransformations(const std::map, std::__cxx11::basic_string >*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/transform.cpp:200:52: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(itr2!=pOptions->end() && NumHvyAtoms()!=atoi(itr2->second.c_str())) ^ [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/obmolecformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/obmolecformat.cpp [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/conformersearch.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/conformersearch.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/obmolecformat.cpp: In static member function 'static bool OpenBabel::OBMoleculeFormat::DoOutputOptions(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/obmolecformat.cpp:208:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (; c < pmol->NumConformers()-1; ++c) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/obmolecformat.cpp: In static member function 'static bool OpenBabel::OBMoleculeFormat::OutputMolsFromReaction(OpenBabel::OBReaction*, OpenBabel::OBConversion*, OpenBabel::OBFormat*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/obmolecformat.cpp:444:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i=0;iNumReactants();i++) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/obmolecformat.cpp:446:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i=0;iNumProducts();i++) ^ In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/src/conformersearch.cpp:19:0: /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/conformersearch.h: In member function 'void OpenBabel::OBConformerSearch::SetFilter(OpenBabel::OBConformerFilter*)': /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/conformersearch.h:260:16: warning: deleting object of abstract class type 'OpenBabel::OBConformerFilter' which has non-virtual destructor will cause undefined behaviour [-Wdelete-non-virtual-dtor] delete m_filter; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/conformersearch.h: In member function 'void OpenBabel::OBConformerSearch::SetScore(OpenBabel::OBConformerScore*)': /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/conformersearch.h:274:16: warning: deleting object of abstract class type 'OpenBabel::OBConformerScore' which has non-virtual destructor will cause undefined behaviour [-Wdelete-non-virtual-dtor] delete m_score; ^ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/math/align.h:26, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/conformersearch.cpp:20: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/conformersearch.cpp: In destructor 'OpenBabel::OBConformerSearch::~OBConformerSearch()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/conformersearch.cpp:152:12: warning: deleting object of abstract class type 'OpenBabel::OBConformerFilter' which has non-virtual destructor will cause undefined behaviour [-Wdelete-non-virtual-dtor] delete m_filter; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/conformersearch.cpp:153:12: warning: deleting object of abstract class type 'OpenBabel::OBConformerScore' which has non-virtual destructor will cause undefined behaviour [-Wdelete-non-virtual-dtor] delete m_score; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/rotamer.cpp:89:14: warning: 'OpenBabel::SwabInt' defined but not used [-Wunused-variable] const bool SwabInt = (STPTR[0]!=0); ^ [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/dlhandler_unix.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/dlhandler_unix.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/parsmart.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-2.3.2/src/parsmart.cpp:123:14: warning: 'int OpenBabel::GetVectorBinding()' declared 'static' but never defined [-Wunused-function] static int GetVectorBinding(); ^ [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/depict/depict.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/depict/depict.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp: In member function 'void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/mcdlutil.cpp:4229:16: warning: 'r1' may be used uninitialized in this function [-Wmaybe-uninitialized] xNew=r1*scale*xu1+this->getAtom(thisAN)->rx; ^ [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/depict/svgpainter.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/depict/svgpainter.cpp [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/math/matrix3x3.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/math/matrix3x3.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/conformersearch.cpp: In member function 'double OpenBabel::OBConformerSearch::MakeSelection()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/conformersearch.cpp:314:31: warning: 'highest' may be used uninitialized in this function [-Wmaybe-uninitialized] double sum = 0.0, lowest, highest; ^ [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/math/spacegroup.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/math/spacegroup.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/depict/depict.cpp: In function 'unsigned int OpenBabel::GetAtomSymClass(OpenBabel::OBAtom*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/depict/depict.cpp:236:11: warning: unused variable 'nclasses' [-Wunused-variable] int nclasses = end_pos - copy_sym.begin(); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/depict/depict.cpp: In member function 'void OpenBabel::OBDepictPrivate::DrawAtomLabel(const string&, int, const OpenBabel::vector3&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/depict/depict.cpp:868:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable] OBFontMetrics metrics = painter->GetFontMetrics(str); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/depict/depict.cpp:873:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable] OBFontMetrics metrics = painter->GetFontMetrics(subscript); ^ [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/math/transform3d.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/math/transform3d.cpp [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/math/vector3.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/math/vector3.cpp [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/math/align.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/math/align.cpp [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/stereo/stereo.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/stereo/stereo.cpp [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/stereo/tetranonplanar.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/stereo/tetranonplanar.cpp In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/math/align.h:26, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/math/align.cpp:24: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^ [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/stereo/tetraplanar.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/stereo/tetraplanar.cpp [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/stereo/squareplanar.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/stereo/squareplanar.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/stereo/stereo.cpp: In static member function 'static void OpenBabel::OBStereo::Permutate(OpenBabel::OBStereo::Refs&, int, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/stereo/stereo.cpp:77:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (i < 0 || i >= refs.size()) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/stereo/stereo.cpp:79:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (j < 0 || j >= refs.size()) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/stereo/stereo.cpp: In static member function 'static OpenBabel::OBStereo::Refs OpenBabel::OBStereo::Permutated(const Refs&, int, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/stereo/stereo.cpp:88:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (i < 0 || i >= refs.size()) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/stereo/stereo.cpp:90:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (j < 0 || j >= refs.size()) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/math/align.cpp: In member function 'std::vector OpenBabel::OBAlign::GetAlignment()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/math/align.cpp:272:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (vector::size_type i=0; i&, std::map&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/stereo/perception.cpp:2764:35: warning: 'close_bond_b' may be used uninitialized in this function [-Wmaybe-uninitialized] if (&*b==close_bond_a || &*b==close_bond_b) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/stereo/perception.cpp:2764:35: warning: 'close_bond_a' may be used uninitialized in this function [-Wmaybe-uninitialized] [ 22%] Linking CXX shared library ../lib64/libopenbabel.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/openbabel.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,libopenbabel.so.4 -o 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CMakeFiles/openbabel.dir/math/transform3d.o CMakeFiles/openbabel.dir/math/vector3.o CMakeFiles/openbabel.dir/math/align.o CMakeFiles/openbabel.dir/stereo/stereo.o CMakeFiles/openbabel.dir/stereo/tetranonplanar.o CMakeFiles/openbabel.dir/stereo/tetraplanar.o CMakeFiles/openbabel.dir/stereo/squareplanar.o CMakeFiles/openbabel.dir/stereo/cistrans.o CMakeFiles/openbabel.dir/stereo/tetrahedral.o CMakeFiles/openbabel.dir/stereo/perception.o CMakeFiles/openbabel.dir/stereo/facade.o -lm -ldl -lz cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/cmake -E cmake_symlink_library ../lib64/libopenbabel.so.4.0.2 ../lib64/libopenbabel.so.4 ../lib64/libopenbabel.so make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 22%] Built target openbabel make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src /usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_fingerprints.dir/DependInfo.cmake --color= make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src /usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_fingerprints.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_fingerprints.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_fingerprints.dir/depend.internal". make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/depend make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src /usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_forcefields.dir/DependInfo.cmake --color= make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src /usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_descriptors.dir/DependInfo.cmake --color= Scanning dependencies of target plugin_fingerprints make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src /usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake --color= make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake --color= make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/build Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_charges.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_charges.dir/depend.internal". make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_ops.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_ops.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_descriptors.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_descriptors.dir/depend.internal". make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_descriptors.dir/depend.internal". make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_forcefields.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_forcefields.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/CMakeFiles/plugin_forcefields.dir/depend.internal". [ 22%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/fingerprints/finger2.cpp Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xmlformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pubchem.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cdxmlformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pubchem.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cdxmlformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xmlformat.dir/depend.internal". Scanning dependencies of target plugin_ops make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build Scanning dependencies of target plugin_charges make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build Scanning dependencies of target plugin_descriptors make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' Scanning dependencies of target plugin_forcefields make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' Scanning dependencies of target pubchem Scanning dependencies of target cdxmlformat Scanning dependencies of target xmlformat [ 22%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.o make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 23%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.o [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_forcefields_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldgaff.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_charges.dir/charges/eem.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/eem.cpp make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/addfilename.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/addfilename.cpp make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 23%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/descriptors/cansmidescriptor.cpp make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 24%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcdxmlformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cdxmlformat.cpp [ 24%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.o [ 24%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpubchem_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/pubchem.dir/xml/pubchem.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/pubchem.cpp cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dxmlformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/xmlformat.dir/xml/xmlformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/xmlformat.cpp [ 24%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/descriptors/cmpdfilter.cpp [ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/addinindex.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/addinindex.cpp [ 24%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dxmlformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/xmlformat.dir/xml/xml.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/xml.cpp [ 24%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/descriptors/groupcontrib.cpp [ 24%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpubchem_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/pubchem.dir/xml/xml.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/xml.cpp [ 24%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_charges.dir/charges/gasteiger.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/gasteiger.cpp [ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/addpolarh.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/addpolarh.cpp [ 24%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcdxmlformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/cdxmlformat.dir/xml/xml.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/xml.cpp [ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/canonical.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/canonical.cpp [ 26%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/fingerprints/finger3.cpp [ 27%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/descriptors/filters.cpp [ 28%] Linking CXX shared module ../../lib64/xmlformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xmlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/xmlformat.so CMakeFiles/xmlformat.dir/xml/xmlformat.o CMakeFiles/xmlformat.dir/xml/xml.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm -lxml2 ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 29%] Linking CXX shared module ../../lib64/pubchem.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pubchem.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pubchem.so CMakeFiles/pubchem.dir/xml/pubchem.o CMakeFiles/pubchem.dir/xml/xml.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm -lxml2 ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/src/RPM/BUILD/openbabel-2.3.2/src/fingerprints/finger3.cpp: In member function 'virtual bool OpenBabel::PatternFP::GetFingerprint(OpenBabel::OBBase*, std::vector&, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/fingerprints/finger3.cpp:108:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(n < _bitcount) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/fingerprints/finger3.cpp: In member function 'virtual std::__cxx11::string OpenBabel::PatternFP::DescribeBits(std::vector, bool)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/fingerprints/finger3.cpp:257:36: warning: operation on 'div' may be undefined [-Wsequence-point] ngrp = (num + div -1)/div--; //rounds up ^ [ 29%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_charges.dir/charges/none.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/none.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Built target xmlformat make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/png2format.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/png2format.dir/depend.internal". Scanning dependencies of target png2format make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Building CXX object src/formats/CMakeFiles/png2format.dir/png2format.o make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpng2format_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/png2format.dir/png2format.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/png2format.cpp [ 29%] Built target pubchem make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chemkinformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chemkinformat.dir/depend.internal". Scanning dependencies of target chemkinformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemkinformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/chemkinformat.dir/chemkinformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/chemkinformat.cpp [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/gen2D.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/gen2D.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/chemkinformat.cpp: In member function 'bool OpenBabel::ChemKinFormat::ReadReactionQualifierLines(std::istream&, OpenBabel::OBReaction*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/chemkinformat.cpp:635:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i=0;iReactionType) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/chemkinformat.cpp:906:11: warning: enumeration value 'THREEBODY' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/chemkinformat.cpp:985:11: warning: enumeration value 'ARRHENIUS' not handled in switch [-Wswitch] switch(pRD->ReactionType) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/chemkinformat.cpp:985:11: warning: enumeration value 'SRI' not handled in switch [-Wswitch] [ 29%] Linking CXX shared module ../../lib64/cdxmlformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cdxmlformat.dir/link.txt --verbose=1 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/png2format.cpp: In member function 'virtual bool OpenBabel::PNG2Format::WriteChemObject(OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/png2format.cpp:102:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] bool nomore = _nmax && (_objects.size()==_nmax); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/png2format.cpp:109:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (!_nrows && !_ncols) && nmols==1)//if neither is specified and there is one output molecule ^ /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cdxmlformat.so CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o CMakeFiles/cdxmlformat.dir/xml/xml.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm -lxml2 ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/png2format.cpp:132:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] pConv->SetLast(n==_objects.size()); ^ [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/fillUC.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/fillUC.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Built target cdxmlformat make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CSRformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CSRformat.dir/depend.internal". Scanning dependencies of target CSRformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/CSRformat.dir/CSRformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CSRformat.cpp [ 29%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/descriptors/inchidescriptor.cpp [ 29%] Building CXX object src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpng2format_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/png2format.dir/__/depict/cairopainter.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/depict/cairopainter.cpp [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/forcefield.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/forcefield.cpp [ 29%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_charges.dir/charges/mmff94.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/mmff94.cpp [ 29%] Linking CXX shared module ../lib64/plugin_fingerprints.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o -lm -ldl -lz ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Built target plugin_fingerprints make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/PQSformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/PQSformat.dir/depend.internal". Scanning dependencies of target PQSformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/PQSformat.dir/PQSformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/PQSformat.cpp [ 29%] Linking CXX shared module ../../lib64/png2format.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/png2format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/png2format.so CMakeFiles/png2format.dir/png2format.o CMakeFiles/png2format.dir/__/depict/cairopainter.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 29%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/descriptors/smartsdescriptors.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Built target png2format make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/nulformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/nulformat.dir/depend.internal". Scanning dependencies of target nulformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dnulformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/nulformat.dir/nulformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/nulformat.cpp [ 29%] Linking CXX shared module ../../lib64/CSRformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/CSRformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Built target CSRformat make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/APIInterface.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/APIInterface.dir/depend.internal". Scanning dependencies of target APIInterface make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/APIInterface.dir/APIInterface.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/APIInterface.cpp [ 29%] Linking CXX shared module ../../lib64/nulformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/nulformat.so CMakeFiles/nulformat.dir/nulformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/gen3d.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/gen3d.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Built target nulformat make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cmlreactformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cmlreactformat.dir/depend.internal". Scanning dependencies of target cmlreactformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcmlreactformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlreactformat.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/PQSformat.cpp: In member function 'virtual bool OpenBabel::PQSFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/PQSformat.cpp:259:65: warning: 'pFormat' may be used uninitialized in this function [-Wmaybe-uninitialized] return pFormat->ReadMolecule(&mol,&coordconv); ^ [ 29%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_charges.dir/charges/qeq.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/qeq.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlreactformat.cpp: In member function 'virtual bool OpenBabel::CMLReactFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlreactformat.cpp:516:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i=0;iNumReactants();i++) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlreactformat.cpp:538:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i=0;iNumProducts();i++) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlreactformat.cpp: In member function 'bool OpenBabel::CMLReactFormat::WriteRateData(OpenBabel::OBReaction*, xmlChar*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlreactformat.cpp:702:9: warning: enumeration value 'ARRHENIUS' not handled in switch [-Wswitch] switch(pRD->ReactionType) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlreactformat.cpp:730:9: warning: enumeration value 'ARRHENIUS' not handled in switch [-Wswitch] switch(pRD->ReactionType) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlreactformat.cpp:730:9: warning: enumeration value 'SRI' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlreactformat.cpp: In member function 'void OpenBabel::CMLReactFormat::WriteMetadataList(OpenBabel::OBReaction&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlreactformat.cpp:769:26: warning: unused variable 'C_TITLE' [-Wunused-variable] static const xmlChar C_TITLE[] = "title"; ^ [ 29%] Linking CXX shared module ../../lib64/PQSformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/PQSformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 29%] Linking CXX shared module ../../lib64/APIInterface.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/APIInterface.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 29%] Linking CXX shared module ../lib64/plugin_descriptors.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1 make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o -lm -ldl -lz ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz [ 29%] Built target APIInterface make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/castepformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/castepformat.dir/depend.internal". make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o [ 29%] Built target PQSformat cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_forcefields_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldghemical.cpp Scanning dependencies of target castepformat make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake --color= make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.o Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/thermoformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/thermoformat.dir/depend.internal". cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcastepformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/castepformat.dir/castepformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/castepformat.cpp Scanning dependencies of target thermoformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dthermoformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/thermoformat.dir/thermoformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/thermoformat.cpp In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/LU:4, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/qeq.h:29, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/qeq.cpp:21: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^ make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Built target plugin_descriptors make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/jaguarformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/jaguarformat.dir/depend.internal". Scanning dependencies of target jaguarformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 29%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Djaguarformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/jaguarformat.dir/jaguarformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/jaguarformat.cpp In file included from /usr/include/eigen2/Eigen/SVD:23:0, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/qeq.h:30, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/qeq.cpp:21: /usr/include/eigen2/Eigen/src/SVD/SVD.h: In instantiation of 'bool Eigen::SVD::solve(const Eigen::MatrixBase&, ResultType*) const [with OtherDerived = Eigen::Matrix; ResultType = Eigen::Matrix; MatrixType = Eigen::Matrix]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/qeq.cpp:335:39: required from here /usr/include/eigen2/Eigen/src/SVD/SVD.h:528:13: warning: unused variable 'rows' [-Wunused-variable] const int rows = m_matU.rows(); ^ [ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/largest.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/largest.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/castepformat.cpp: In member function 'virtual bool OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/castepformat.cpp:188:31: warning: 'enthalpy' may be used uninitialized in this function [-Wmaybe-uninitialized] energy = enthalpy - pv; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/castepformat.cpp:187:21: warning: 'volume' may be used uninitialized in this function [-Wmaybe-uninitialized] pv = volume * pressure * GPA_A3_TO_KCAL_PER_MOL; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/castepformat.cpp:187:21: warning: 'pressure' may be used uninitialized in this function [-Wmaybe-uninitialized] [ 31%] Linking CXX shared module ../../lib64/jaguarformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/jaguarformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/jaguarformat.so CMakeFiles/jaguarformat.dir/jaguarformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 31%] Built target jaguarformat make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/abinitformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/abinitformat.dir/depend.internal". Scanning dependencies of target abinitformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 32%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dabinitformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/abinitformat.dir/abinitformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/abinitformat.cpp [ 32%] Linking CXX shared module ../../lib64/castepformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/castepformat.so CMakeFiles/castepformat.dir/castepformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 33%] Linking CXX shared module ../../lib64/chemkinformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemkinformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/chemkinformat.so CMakeFiles/chemkinformat.dir/chemkinformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 33%] Built target castepformat make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gausscubeformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gausscubeformat.dir/depend.internal". Scanning dependencies of target gausscubeformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 33%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgausscubeformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/gausscubeformat.dir/gausscubeformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gausscubeformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 33%] Built target chemkinformat make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/nwchemformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/nwchemformat.dir/depend.internal". Scanning dependencies of target nwchemformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 33%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dnwchemformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/nwchemformat.dir/nwchemformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/nwchemformat.cpp [ 33%] Linking CXX shared module ../../lib64/thermoformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 33%] Built target thermoformat make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mdlformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mdlformat.dir/depend.internal". Scanning dependencies of target mdlformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 33%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmdlformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/mdlformat.dir/mdlformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mdlformat.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gausscubeformat.cpp: In member function 'virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gausscubeformat.cpp:425:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (vgd.size() < nCubes) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gausscubeformat.cpp:472:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (values.size() < n*nCubes) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gausscubeformat.cpp:107:17: warning: unused variable 'title' [-Wunused-variable] const char* title = pConv->GetTitle(); ^ [ 33%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/loader.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/loader.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mdlformat.cpp: In member function 'bool OpenBabel::MDLFormat::ReadAtomBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mdlformat.cpp:1095:10: warning: unused variable 'chiralWatch' [-Wunused-variable] bool chiralWatch=false; ^ [ 33%] Linking CXX shared module ../../lib64/abinitformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/abinitformat.so CMakeFiles/abinitformat.dir/abinitformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 33%] Built target abinitformat make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/molreport.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/molreport.dir/depend.internal". Scanning dependencies of target molreport make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 34%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmolreport_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/molreport.dir/molreport.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/molreport.cpp [ 34%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcmlreactformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/cmlreactformat.dir/xml/xml.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/xml.cpp [ 35%] Linking CXX shared module ../../lib64/nwchemformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nwchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/nwchemformat.so CMakeFiles/nwchemformat.dir/nwchemformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 35%] Built target nwchemformat make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/hinformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/hinformat.dir/depend.internal". Scanning dependencies of target hinformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 35%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dhinformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/hinformat.dir/hinformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/hinformat.cpp [ 36%] Linking CXX shared module ../../lib64/gausscubeformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausscubeformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gausscubeformat.so CMakeFiles/gausscubeformat.dir/gausscubeformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 36%] Built target gausscubeformat make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mopacformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mopacformat.dir/depend.internal". Scanning dependencies of target mopacformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 36%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmopacformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/mopacformat.dir/mopacformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mopacformat.cpp [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/optransform.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/optransform.cpp [ 36%] Linking CXX shared module ../../lib64/molreport.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molreport.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/molreport.so CMakeFiles/molreport.dir/molreport.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mopacformat.cpp: In member function 'virtual bool OpenBabel::MOPACCARTFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mopacformat.cpp:543:19: warning: variable 'isotopeMass' set but not used [-Wunused-but-set-variable] double x,y,z, isotopeMass; ^ make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 36%] Built target molreport make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gausszmatformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gausszmatformat.dir/depend.internal". Scanning dependencies of target gausszmatformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 36%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgausszmatformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/gausszmatformat.dir/gausszmatformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gausszmatformat.cpp [ 36%] Linking CXX shared module ../../lib64/hinformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/hinformat.so CMakeFiles/hinformat.dir/hinformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mdlformat.cpp: In member function 'void OpenBabel::MDLFormat::CisTransFromUpDown(OpenBabel::OBMol*, std::map*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mdlformat.cpp:1721:58: warning: 'a2_stereo' may be used uninitialized in this function [-Wmaybe-uninitialized] if (a1_stereo == OBStereo::UnknownDir || a2_stereo == OBStereo::UnknownDir) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mdlformat.cpp:1715:7: warning: 'a1_stereo' may be used uninitialized in this function [-Wmaybe-uninitialized] if (a1_stereo == a2_stereo) ^ make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 36%] Built target hinformat make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fhiaimsformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fhiaimsformat.dir/depend.internal". Scanning dependencies of target fhiaimsformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 36%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfhiaimsformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/fhiaimsformat.cpp [ 37%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_charges.dir/charges/qtpie.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/qtpie.cpp [ 37%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_forcefields_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp [ 38%] Linking CXX shared module ../../lib64/cmlreactformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlreactformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cmlreactformat.so CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o CMakeFiles/cmlreactformat.dir/xml/xml.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm -lxml2 ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In member function 'virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:2766:32: warning: variable 'bondtype1' set but not used [-Wunused-but-set-variable] int angletype, strbndtype, bondtype1, bondtype2; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:2766:43: warning: variable 'bondtype2' set but not used [-Wunused-but-set-variable] int angletype, strbndtype, bondtype1, bondtype2; ^ make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 38%] Built target cmlreactformat make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/copyformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/copyformat.dir/depend.internal". Scanning dependencies of target copyformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 38%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcopyformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/copyformat.dir/copyformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/copyformat.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.h:288:41: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:140:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < _bondcalculations.size(); ++i) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.h:288:59: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:140:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.h:294:42: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:255:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < _anglecalculations.size(); ++i) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.h:294:61: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:255:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.h:300:43: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:368:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < _strbndcalculations.size(); ++i) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.h:300:63: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:368:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.h:306:44: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:504:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < _torsioncalculations.size(); ++i) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.h:306:65: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:504:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.h:312:40: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:602:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < _oopcalculations.size(); ++i) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.h:312:57: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:602:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.h:318:40: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:699:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < _vdwcalculations.size(); ++i) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.h:318:57: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:699:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.h:324:50: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:785:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < _electrostaticcalculations.size(); ++i) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.h:324:77: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:785:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/LU:4, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/qtpie.h:29, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/qtpie.cpp:21: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^ In file included from /usr/include/eigen2/Eigen/SVD:23:0, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/qtpie.h:30, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/qtpie.cpp:21: /usr/include/eigen2/Eigen/src/SVD/SVD.h: In instantiation of 'bool Eigen::SVD::solve(const Eigen::MatrixBase&, ResultType*) const [with OtherDerived = Eigen::Matrix; ResultType = Eigen::Matrix; MatrixType = Eigen::Matrix]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/charges/qtpie.cpp:384:39: required from here /usr/include/eigen2/Eigen/src/SVD/SVD.h:528:13: warning: unused variable 'rows' [-Wunused-variable] const int rows = m_matU.rows(); ^ [ 38%] Linking CXX shared module ../../lib64/copyformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/copyformat.so CMakeFiles/copyformat.dir/copyformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 38%] Linking CXX shared module ../../lib64/fhiaimsformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhiaimsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fhiaimsformat.so CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 38%] Built target copyformat make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake --color= make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gamessformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gamessformat.dir/depend.internal". [ 38%] Built target fhiaimsformat [ 38%] Linking CXX shared module ../../lib64/mdlformat.so make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1 make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake --color= Scanning dependencies of target gamessformat Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/tinkerformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/tinkerformat.dir/depend.internal". make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 39%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.o Scanning dependencies of target tinkerformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgamessformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/gamessformat.dir/gamessformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessformat.cpp make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 39%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dtinkerformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/tinkerformat.dir/tinkerformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/tinkerformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 39%] Built target mdlformat make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/dmolformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/dmolformat.dir/depend.internal". Scanning dependencies of target dmolformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 40%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Ddmolformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/dmolformat.dir/dmolformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/dmolformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/atom.h:35:0, from /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/mol.h:42, from /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/obmolecformat.h:34, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mopacformat.cpp:17: /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/math/vector3.h: In member function 'virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/math/vector3.h:70:16: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized] _vy = inY; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mopacformat.cpp:73:14: note: 'y' was declared here double x,y,z; ^ In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/atom.h:35:0, from /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/mol.h:42, from /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/obmolecformat.h:34, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mopacformat.cpp:17: /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/math/vector3.h:69:16: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized] _vx = inX; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mopacformat.cpp:73:12: note: 'x' was declared here double x,y,z; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessformat.cpp: In member function 'virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessformat.cpp:577:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int i = 0; i < newModes; ++i) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessformat.cpp:613:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int i = 0; i < modeCount; ++i) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessformat.cpp:614:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (i >= modeCount - newModes){ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessformat.cpp:233:9: warning: variable 'ndummyatoms' set but not used [-Wunused-but-set-variable] int ndummyatoms = 0; ^ [ 40%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/partialcharges.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/partialcharges.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/tinkerformat.cpp: In member function 'virtual bool OpenBabel::TinkerFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/tinkerformat.cpp:101:9: warning: unused variable 'atomicNum' [-Wunused-variable] int atomicNum; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/tinkerformat.cpp: In function 'int OpenBabel::SetMM3Type(OpenBabel::OBAtom*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/tinkerformat.cpp:220:17: warning: unused variable 'c' [-Wunused-variable] OBAtom *b, *c; // neighbors ^ [ 40%] Linking CXX shared module ../../lib64/gausszmatformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausszmatformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gausszmatformat.so CMakeFiles/gausszmatformat.dir/gausszmatformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 40%] Built target gausszmatformat make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xyzformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xyzformat.dir/depend.internal". Scanning dependencies of target xyzformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 41%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dxyzformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/xyzformat.dir/xyzformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xyzformat.cpp [ 41%] Linking CXX shared module ../../lib64/mopacformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/tinkerformat.cpp:486:3: warning: control reaches end of non-void function [-Wreturn-type] } ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In member function 'bool OpenBabel::OBForceFieldMMFF94::PerceiveAromatic()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:1443:47: warning: 'first_rj' may be used uninitialized in this function [-Wmaybe-uninitialized] ringbond = _mol.GetBond(first_rj, index); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:1443:47: warning: 'index' may be used uninitialized in this function [-Wmaybe-uninitialized] [ 41%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/readconformers.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/readconformers.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 41%] Built target mopacformat make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/turbomoleformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/turbomoleformat.dir/depend.internal". Scanning dependencies of target turbomoleformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 41%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dturbomoleformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/turbomoleformat.dir/turbomoleformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/turbomoleformat.cpp [ 42%] Linking CXX shared module ../../lib64/tinkerformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 42%] Built target tinkerformat make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mol2format.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mol2format.dir/depend.internal". Scanning dependencies of target mol2format make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 42%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmol2format_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/mol2format.dir/mol2format.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mol2format.cpp [ 42%] Linking CXX shared module ../../lib64/dmolformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 42%] Built target dmolformat make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/amberformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/amberformat.dir/depend.internal". Scanning dependencies of target amberformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 43%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Damberformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/amberformat.dir/amberformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/amberformat.cpp [ 43%] Linking CXX shared module ../../lib64/turbomoleformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1 [ 43%] Linking CXX shared module ../../lib64/xyzformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xyzformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/xyzformat.so CMakeFiles/xyzformat.dir/xyzformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessformat.cpp:559:62: warning: 'lowFreqModesEnd' may be used uninitialized in this function [-Wmaybe-uninitialized] if (numIntens < lowFreqModesBegin || numIntens > lowFreqModesEnd) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessformat.cpp:559:29: warning: 'lowFreqModesBegin' may be used uninitialized in this function [-Wmaybe-uninitialized] if (numIntens < lowFreqModesBegin || numIntens > lowFreqModesEnd) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessformat.cpp:726:65: warning: 'aHOMO' may be used uninitialized in this function [-Wmaybe-uninitialized] od->LoadClosedShellOrbitals(orbitals, symmetries, aHOMO); ^ make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 43%] Built target turbomoleformat make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/vaspformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/vaspformat.dir/depend.internal". Scanning dependencies of target vaspformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 43%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dvaspformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/vaspformat.dir/vaspformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/vaspformat.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mol2format.cpp: In member function 'virtual bool OpenBabel::MOL2Format::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mol2format.cpp:374:99: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n_h_bonded < min_n_h_bonded || (n_h_bonded == min_n_h_bonded && partner->GetIdx() < min_idx)) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mol2format.cpp:397:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (partner->GetIdx() == min_idx) { ^ make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mol2format.cpp: In member function 'virtual int OpenBabel::MOL2Format::SkipObjects(int, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mol2format.cpp:607:10: warning: unused variable 'ch' [-Wunused-variable] char ch = ifs.peek(); ^ [ 43%] Built target xyzformat make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fastaformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fastaformat.dir/depend.internal". Scanning dependencies of target fastaformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 43%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfastaformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/fastaformat.dir/fastaformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/fastaformat.cpp [ 44%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/sort.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/sort.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/vaspformat.cpp:399:17: warning: unused variable 'freqnum' [-Wunused-variable] int freqnum = atoi(vs[0].c_str()); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/fastaformat.cpp: In function 'void OpenBabel::add_residue(OpenBabel::OBMol*, OpenBabel::OBResidue*, double, double, long unsigned int&, OpenBabel::ResidueRecord*, int, OpenBabel::OBAtom*&, bool, bool)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/fastaformat.cpp:387:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] else if (atom_count > resBondFromOffset) ^ [ 44%] Linking CXX shared module ../../lib64/amberformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/amberformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/amberformat.so CMakeFiles/amberformat.dir/amberformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 44%] Built target amberformat make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fpsformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fpsformat.dir/depend.internal". Scanning dependencies of target fpsformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 44%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfpsformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/fpsformat.dir/fpsformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/fpsformat.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/vaspformat.cpp:362:62: warning: 'fermi' may be used uninitialized in this function [-Wmaybe-uninitialized] dos->SetData(fermi, energies, densities, integration); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mol2format.cpp: In member function 'virtual bool OpenBabel::MOL2Format::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mol2format.cpp:349:32: warning: 'boundToNitrogen' may be used uninitialized in this function [-Wmaybe-uninitialized] OBAtom *carbon, *partner, *boundToNitrogen; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/fpsformat.cpp: In member function 'virtual bool OpenBabel::FPSFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/fpsformat.cpp:146:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(unsigned i=0;i<(_nbits+31)/32;++i) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/fpsformat.cpp: In member function 'std::__cxx11::string OpenBabel::FPSFormat::getTimeStr()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/fpsformat.cpp:169:10: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] size_t time_res; /* Result of strftime */ ^ [ 44%] Linking CXX shared module ../../lib64/gamessformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessformat.dir/link.txt --verbose=1 [ 44%] Linking CXX shared module ../../lib64/fastaformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gamessformat.so CMakeFiles/gamessformat.dir/gamessformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 44%] Built target gamessformat make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/povrayformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/povrayformat.dir/depend.internal". Scanning dependencies of target povrayformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 44%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpovrayformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/povrayformat.dir/povrayformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/povrayformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 44%] Built target fastaformat make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/smilesformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/smilesformat.dir/depend.internal". [ 45%] Linking CXX shared module ../../lib64/mol2format.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mol2format.so CMakeFiles/mol2format.dir/mol2format.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz Scanning dependencies of target smilesformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 45%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dsmilesformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/smilesformat.dir/smilesformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/smilesformat.cpp [ 45%] Linking CXX shared module ../../lib64/vaspformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/vaspformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/vaspformat.so CMakeFiles/vaspformat.dir/vaspformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 45%] Built target mol2format make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/bgfformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/bgfformat.dir/depend.internal". Scanning dependencies of target bgfformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 45%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dbgfformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/bgfformat.dir/bgfformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/bgfformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 45%] Built target vaspformat make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/ghemicalformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/ghemicalformat.dir/depend.internal". Scanning dependencies of target ghemicalformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 45%] Linking CXX shared module ../lib64/plugin_charges.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.o CMakeFiles/plugin_charges.dir/charges/gasteiger.o CMakeFiles/plugin_charges.dir/charges/none.o CMakeFiles/plugin_charges.dir/charges/mmff94.o CMakeFiles/plugin_charges.dir/charges/qeq.o CMakeFiles/plugin_charges.dir/charges/qtpie.o -lm -ldl -lz ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz [ 46%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dghemicalformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/ghemicalformat.dir/ghemicalformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/ghemicalformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 46%] Built target plugin_charges make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/MNAformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/MNAformat.dir/depend.internal". Scanning dependencies of target MNAformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 46%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/MNAformat.dir/MNAformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/MNAformat.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBSmilesParser::ParseSmiles(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/smilesformat.cpp:584:15: warning: variable 'atom' set but not used [-Wunused-but-set-variable] OBAtom* atom; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/smilesformat.cpp: In member function 'std::vector OpenBabel::OBMol2Cansmi::GetCanonClosureDigits(OpenBabel::OBAtom*, OpenBabel::OBBitVec&, std::vector&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/smilesformat.cpp:3471:11: warning: unused variable 'bo' [-Wunused-variable] int bo = (bond1->IsAromatic())? 1 : bond1->GetBO(); // CJ: why was this line added? bo is never used? ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/smilesformat.cpp: In member function 'void OpenBabel::OBMol2Cansmi::CreateFragCansmiString(OpenBabel::OBMol&, OpenBabel::OBBitVec&, bool, char*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/smilesformat.cpp:3998:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0; iGetTitle(); ^ make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 46%] Built target fpsformat make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chemdrawct.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chemdrawct.dir/depend.internal". Scanning dependencies of target chemdrawct make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 46%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemdrawct_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/chemdrawct.dir/chemdrawct.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/chemdrawct.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp: In member function 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:4281:40: warning: 'eeq' may be used uninitialized in this function [-Wmaybe-uninitialized] delta = (E_Electrostatic() - eeq); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:4277:31: warning: 'evdw' may be used uninitialized in this function [-Wmaybe-uninitialized] delta = (E_VDW() - evdw); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:4273:35: warning: 'etor' may be used uninitialized in this function [-Wmaybe-uninitialized] delta = (E_Torsion() - etor); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:4265:35: warning: 'estbn' may be used uninitialized in this function [-Wmaybe-uninitialized] delta = (E_StrBnd() - estbn); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:4269:31: warning: 'eoop' may be used uninitialized in this function [-Wmaybe-uninitialized] delta = (E_OOP() - eoop); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:4261:35: warning: 'eangle' may be used uninitialized in this function [-Wmaybe-uninitialized] delta = (E_Angle() - eangle); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefieldmmff94.cpp:4257:33: warning: 'ebond' may be used uninitialized in this function [-Wmaybe-uninitialized] delta = (E_Bond() - ebond); ^ [ 47%] Linking CXX shared module ../../lib64/bgfformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/bgfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/bgfformat.so CMakeFiles/bgfformat.dir/bgfformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 47%] Built target bgfformat make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/textformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/textformat.dir/depend.internal". Scanning dependencies of target textformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 48%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dtextformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/textformat.dir/textformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/textformat.cpp [ 48%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/opisomorph.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/opisomorph.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/opisomorph.cpp: In member function 'virtual bool OpenBabel::OpNewS::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/opisomorph.cpp:230:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(pmol->NumHvyAtoms() != nPatternAtoms) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/opisomorph.cpp:286:15: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if(!showAll && (!match && !inv) || (match && inv)) ^ [ 48%] Linking CXX shared module ../../lib64/chemdrawct.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawct.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 49%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_forcefields_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefielduff.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 49%] Built target chemdrawct make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/opendxformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/opendxformat.dir/depend.internal". Scanning dependencies of target opendxformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 49%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dopendxformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/opendxformat.dir/opendxformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/opendxformat.cpp [ 49%] Linking CXX shared module ../../lib64/ghemicalformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ghemicalformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/ghemicalformat.so CMakeFiles/ghemicalformat.dir/ghemicalformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 50%] Linking CXX shared module ../../lib64/povrayformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 50%] Linking CXX shared module ../../lib64/textformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/textformat.dir/link.txt --verbose=1 make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/textformat.so CMakeFiles/textformat.dir/textformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 50%] Built target povrayformat make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake --color= [ 50%] Built target ghemicalformat make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cacaoformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cacaoformat.dir/depend.internal". Scanning dependencies of target cacaoformat Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pngformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pngformat.dir/depend.internal". make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' Scanning dependencies of target pngformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 51%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcacaoformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/cacaoformat.dir/cacaoformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/cacaoformat.cpp [ 52%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpngformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/pngformat.dir/pngformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pngformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 52%] Built target textformat make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/MCDLformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/MCDLformat.dir/depend.internal". Scanning dependencies of target MCDLformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 52%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/MCDLformat.dir/MCDLformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/MCDLformat.cpp [ 52%] Linking CXX shared module ../../lib64/MNAformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 52%] Built target MNAformat make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/alchemyformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/alchemyformat.dir/depend.internal". Scanning dependencies of target alchemyformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 52%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dalchemyformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/alchemyformat.dir/alchemyformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/alchemyformat.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefielduff.cpp: In instantiation of 'void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefielduff.cpp:466:7: required from 'double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = true]' /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefielduff.h:190:38: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefielduff.cpp:419:14: warning: unused variable 'ab' [-Wunused-variable] double ab[3]; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefielduff.cpp: In instantiation of 'void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefielduff.cpp:466:7: required from 'double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = false]' /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefielduff.h:190:55: required from here /usr/src/RPM/BUILD/openbabel-2.3.2/src/forcefields/forcefielduff.cpp:419:14: warning: unused variable 'ab' [-Wunused-variable] /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/MCDLformat.cpp: In member function 'std::__cxx11::string OpenBabel::MCDLFormat::getMCDL(OpenBabel::OBMol*, bool)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/MCDLformat.cpp:529:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] bool test;//, testParity; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/MCDLformat.cpp: In member function 'void OpenBabel::MCDLFormat::setMCDL(std::__cxx11::string, OpenBabel::OBMol*, std::__cxx11::string&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/MCDLformat.cpp:1266:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (nPrev == acount) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/MCDLformat.cpp: In member function 'int OpenBabel::MCDLFormat::indexOf(std::__cxx11::string, std::__cxx11::string, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/MCDLformat.cpp:1384:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (result == string::npos) result=-1; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/MCDLformat.cpp:1385:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (result >= instring.length()) result=-1; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/MCDLformat.cpp: In member function 'int OpenBabel::MCDLFormat::lastIndexOf(std::__cxx11::string, std::__cxx11::string)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/MCDLformat.cpp:1398:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n == string::npos) ^ [ 52%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/ophighlight.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/ophighlight.cpp [ 52%] Linking CXX shared module ../../lib64/opendxformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 52%] Linking CXX shared module ../../lib64/cacaoformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacaoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 52%] Built target cacaoformat make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/svgformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/svgformat.dir/depend.internal". Scanning dependencies of target svgformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 52%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dsvgformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/svgformat.dir/svgformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/svgformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 52%] Built target opendxformat make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/viewmolformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/viewmolformat.dir/depend.internal". Scanning dependencies of target viewmolformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 52%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dviewmolformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/viewmolformat.dir/viewmolformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/viewmolformat.cpp [ 52%] Linking CXX shared module ../../lib64/alchemyformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/alchemyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/alchemyformat.so CMakeFiles/alchemyformat.dir/alchemyformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 52%] Built target alchemyformat make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/acesformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/acesformat.dir/depend.internal". /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/ophighlight.cpp: In member function 'virtual bool OpenBabel::OpHighlight::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/ophighlight.cpp:71:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int vecIdx=0; vecIdx&, const string&, const string&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/ophighlight.cpp:132:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int j=0; jAddChemObject(pMolCopy); //dummy add to empty queue ^ make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 53%] Built target titleformat make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cccformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cccformat.dir/depend.internal". Scanning dependencies of target cccformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 53%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcccformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/cccformat.dir/cccformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/cccformat.cpp [ 53%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/plugin_ops.dir/ops/conformer.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/conformer.cpp [ 53%] Linking CXX shared module ../../lib64/qchemformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 53%] Linking CXX shared module ../../lib64/acesformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/acesformat.so CMakeFiles/acesformat.dir/acesformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 53%] Built target acesformat make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gulpformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gulpformat.dir/depend.internal". Scanning dependencies of target gulpformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 53%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dasciiformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/depict/asciipainter.cpp [ 53%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgulpformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/gulpformat.dir/gulpformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gulpformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 53%] Built target qchemformat make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/adfformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/adfformat.dir/depend.internal". Scanning dependencies of target adfformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 53%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dadfformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/adfformat.dir/adfformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/adfformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/conformer.cpp:32:0: /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/conformersearch.h: In member function 'void OpenBabel::OBConformerSearch::SetFilter(OpenBabel::OBConformerFilter*)': /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/conformersearch.h:260:16: warning: deleting object of abstract class type 'OpenBabel::OBConformerFilter' which has non-virtual destructor will cause undefined behaviour [-Wdelete-non-virtual-dtor] delete m_filter; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/conformersearch.h: In member function 'void OpenBabel::OBConformerSearch::SetScore(OpenBabel::OBConformerScore*)': /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/conformersearch.h:274:16: warning: deleting object of abstract class type 'OpenBabel::OBConformerScore' which has non-virtual destructor will cause undefined behaviour [-Wdelete-non-virtual-dtor] delete m_score; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/depict/asciipainter.cpp: In member function 'virtual void OpenBabel::ASCIIPainter::DrawText(double, double, const string&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/depict/asciipainter.cpp:104:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0; iGetId() == ct->end || a->GetId() == stereo.neighbor[0] ) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/inchiformat.cpp:195:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( !(b->GetId() == ct->begin || b->GetId() == stereo.neighbor[3] ) ) { ^ make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 56%] Built target plugin_forcefields make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/outformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/outformat.dir/depend.internal". Scanning dependencies of target outformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 56%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Doutformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/outformat.dir/outformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/outformat.cpp [ 56%] Built target gulpformat make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/boxformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/boxformat.dir/depend.internal". Scanning dependencies of target boxformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 56%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dboxformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/boxformat.dir/boxformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/boxformat.cpp In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/math/align.h:26, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/opalign.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/acrformat.cpp: In member function 'virtual bool OpenBabel::ACRFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/acrformat.cpp:137:39: warning: 'scale' may be used uninitialized in this function [-Wmaybe-uninitialized] X = atof((char*)vs[6].c_str())/scale; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/acrformat.cpp:159:5: warning: 'bonds' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( pmol->NumBonds() != bonds ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/acrformat.cpp:163:12: warning: 'atoms' may be used uninitialized in this function [-Wmaybe-uninitialized] } else if ( pmol->NumAtoms() != atoms ) { ^ [ 57%] Linking CXX shared module ../../lib64/acrformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/acrformat.so CMakeFiles/acrformat.dir/acrformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 57%] Linking CXX shared module ../../lib64/balstformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/balstformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/balstformat.so CMakeFiles/balstformat.dir/balstformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 57%] Built target acrformat make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cacheformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cacheformat.dir/depend.internal". Scanning dependencies of target cacheformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 57%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcacheformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/cacheformat.dir/cacheformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/cacheformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 57%] Built target balstformat make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gamessukformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gamessukformat.dir/depend.internal". Scanning dependencies of target gamessukformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 57%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgamessukformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/gamessukformat.dir/gamessukformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessukformat.cpp [ 57%] Linking CXX shared module ../../lib64/boxformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/boxformat.dir/link.txt --verbose=1 [ 57%] Linking CXX shared module ../../lib64/outformat.so /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/boxformat.so CMakeFiles/boxformat.dir/boxformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/outformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/outformat.so CMakeFiles/outformat.dir/outformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 57%] Linking CXX shared module ../../lib64/adfformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/adfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/adfformat.so CMakeFiles/adfformat.dir/adfformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 57%] Built target outformat make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend [ 57%] Built target boxformat make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake --color= make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chem3dformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chem3dformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/carformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/carformat.dir/depend.internal". Scanning dependencies of target chem3dformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/build Scanning dependencies of target carformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 57%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchem3dformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/chem3dformat.dir/chem3dformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/chem3dformat.cpp [ 57%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcarformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/carformat.dir/carformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/carformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 57%] Built target adfformat make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chemtoolformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chemtoolformat.dir/depend.internal". Scanning dependencies of target chemtoolformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 57%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemtoolformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/chemtoolformat.dir/chemtoolformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/chemtoolformat.cpp [ 57%] Linking CXX shared module ../../lib64/cacheformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacheformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cacheformat.so CMakeFiles/cacheformat.dir/cacheformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 57%] Linking CXX shared module ../lib64/plugin_ops.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_ops.so CMakeFiles/plugin_ops.dir/ops/addfilename.o CMakeFiles/plugin_ops.dir/ops/addinindex.o CMakeFiles/plugin_ops.dir/ops/addpolarh.o CMakeFiles/plugin_ops.dir/ops/canonical.o CMakeFiles/plugin_ops.dir/ops/gen2D.o CMakeFiles/plugin_ops.dir/ops/fillUC.o CMakeFiles/plugin_ops.dir/ops/forcefield.o CMakeFiles/plugin_ops.dir/ops/gen3d.o CMakeFiles/plugin_ops.dir/ops/largest.o CMakeFiles/plugin_ops.dir/ops/loader.o CMakeFiles/plugin_ops.dir/ops/optransform.o CMakeFiles/plugin_ops.dir/ops/partialcharges.o CMakeFiles/plugin_ops.dir/ops/readconformers.o CMakeFiles/plugin_ops.dir/ops/sort.o CMakeFiles/plugin_ops.dir/ops/opisomorph.o CMakeFiles/plugin_ops.dir/ops/ophighlight.o CMakeFiles/plugin_ops.dir/ops/xout.o CMakeFiles/plugin_ops.dir/ops/conformer.o CMakeFiles/plugin_ops.dir/ops/opalign.o -lm -ldl -lz ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 57%] Built target cacheformat make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fhformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fhformat.dir/depend.internal". Scanning dependencies of target fhformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 58%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfhformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/fhformat.dir/fhformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/fhformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 58%] Built target plugin_ops make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/reportformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/reportformat.dir/depend.internal". Scanning dependencies of target reportformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 59%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dreportformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/reportformat.dir/reportformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/reportformat.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadInitialCartesian(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessukformat.cpp:779:10: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok=false; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz1(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessukformat.cpp:845:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok=false; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz2(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessukformat.cpp:892:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok=false; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessukformat.cpp: In member function 'virtual bool OpenBabel::GAMESSUKOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gamessukformat.cpp:1207:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok; ^ [ 60%] Linking CXX shared module ../../lib64/MCDLformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MCDLformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/MCDLformat.so CMakeFiles/MCDLformat.dir/MCDLformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 60%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dinchiformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchiformat.dir/getinchi.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/getinchi.cpp [ 60%] Linking CXX shared module ../../lib64/chemtoolformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemtoolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/chemtoolformat.so CMakeFiles/chemtoolformat.dir/chemtoolformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 60%] Linking CXX shared module ../../lib64/reportformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/reportformat.dir/link.txt --verbose=1 make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/reportformat.so CMakeFiles/reportformat.dir/reportformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 60%] Built target MCDLformat make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/yasaraformat.dir/depend.internal". 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Scanning dependencies of target yasaraformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 60%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dyasaraformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/yasaraformat.dir/yasaraformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/yasaraformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 60%] Built target chemtoolformat make -f src/formats/CMakeFiles/xtcformat.dir/build.make src/formats/CMakeFiles/xtcformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xtcformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xtcformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xtcformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xtcformat.dir/depend.internal". Scanning dependencies of target xtcformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/xtcformat.dir/build.make src/formats/CMakeFiles/xtcformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 60%] Building CXX object src/formats/CMakeFiles/xtcformat.dir/xtcformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dxtcformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/xtcformat.dir/xtcformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 60%] Built target reportformat make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake --color= [ 61%] Linking CXX shared module ../../lib64/carformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1 Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cifformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cifformat.dir/depend.internal". /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/carformat.so CMakeFiles/carformat.dir/carformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz Scanning dependencies of target cifformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcifformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/cifformat.dir/cifformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/cifformat.cpp [ 61%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dinchiformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/inchiformat.dir/__/ops/unique.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/ops/unique.cpp [ 61%] Linking CXX shared module ../../lib64/fhformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fhformat.so CMakeFiles/fhformat.dir/fhformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Built target carformat make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/crkformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/crkformat.dir/depend.internal". Scanning dependencies of target crkformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcrkformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/crkformat.dir/crkformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/crkformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Built target fhformat make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pwscfformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pwscfformat.dir/depend.internal". Scanning dependencies of target pwscfformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpwscfformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/pwscfformat.dir/pwscfformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pwscfformat.cpp [ 61%] Linking CXX shared module ../../lib64/chem3dformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chem3dformat.dir/link.txt --verbose=1 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/yasaraformat.cpp: In member function 'virtual bool OpenBabel::YOBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/yasaraformat.cpp:411:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] *((int32*)resname)=id.resnamechain; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/yasaraformat.cpp:429:23: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] *((int32*)atomname)=id.atom; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/yasaraformat.cpp:368:21: warning: variable 'reslen' set but not used [-Wunused-but-set-variable] int /*samenames,*/reslen,charged; ^ /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/cifformat.cpp: In member function 'void OpenBabel::CIFData::CalcMatrices(bool)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/cifformat.cpp:833:11: warning: variable 'aa' set but not used [-Wunused-but-set-variable] float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/cifformat.cpp:833:14: warning: variable 'bb' set but not used [-Wunused-but-set-variable] float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/cifformat.cpp:833:27: warning: variable 'betaa' set but not used [-Wunused-but-set-variable] float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/cifformat.cpp:833:33: warning: variable 'gammaa' set but not used [-Wunused-but-set-variable] float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters ^ make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Built target chem3dformat make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pdbformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pdbformat.dir/depend.internal". Scanning dependencies of target pdbformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpdbformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/pdbformat.dir/pdbformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pdbformat.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp: In member function 'virtual bool OpenBabel::XTCFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp:152:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (natoms != mol.NumAtoms()) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp: In member function 'int OpenBabel::XTCFormat::sizeofint(int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp:395:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (size >= num && num_of_bits < 32) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp: In member function 'int OpenBabel::XTCFormat::sizeofints(int, unsigned int*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp:435:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (bytes[num_of_bytes] >= num) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp: In member function 'void OpenBabel::XTCFormat::sendints(int*, int, int, unsigned int*, unsigned int*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp:490:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (num_of_bits >= num_of_bytes * 8) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp:491:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i = 0; i < num_of_bytes; i++) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp:496:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i = 0; i < num_of_bytes-1; i++) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp: In member function 'int OpenBabel::XTCFormat::receivebits(int*, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp:531:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (lastbits < num_of_bits) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp: In member function 'int OpenBabel::XTCFormat::xdr3dfcoord(XDR*, float*, int*, float*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp:772:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { ^ [ 61%] Linking CXX shared module ../../lib64/yasaraformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/yasaraformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/yasaraformat.so CMakeFiles/yasaraformat.dir/yasaraformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp:957:33: warning: array subscript is above array bounds [-Warray-bounds] larger = magicints[maxidx]; ^ make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Built target yasaraformat make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake --color= /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp:978:37: warning: 'bitsizeint[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[2] = receivebits(buf, bitsizeint[2]); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp:977:37: warning: 'bitsizeint[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[1] = receivebits(buf, bitsizeint[1]); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp:976:37: warning: 'bitsizeint[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[0] = receivebits(buf, bitsizeint[0]); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp:789:30: warning: 'prevcoord[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] abs(thiscoord[2] - prevcoord[2]) < larger) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp:788:30: warning: 'prevcoord[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] abs(thiscoord[1] - prevcoord[1]) < larger && ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xtcformat.cpp:787:30: warning: 'prevcoord[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] abs(thiscoord[0] - prevcoord[0]) < larger && ^ Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cssrformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cssrformat.dir/depend.internal". Scanning dependencies of target cssrformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Building CXX object src/formats/CMakeFiles/cssrformat.dir/cssrformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcssrformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/cssrformat.dir/cssrformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/cssrformat.cpp [ 61%] Linking CXX shared module ../../lib64/inchiformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.o CMakeFiles/inchiformat.dir/getinchi.o CMakeFiles/inchiformat.dir/__/ops/unique.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pwscfformat.cpp: In member function 'virtual bool OpenBabel::PWscfFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pwscfformat.cpp:21:28: warning: 'pv' may be used uninitialized in this function [-Wmaybe-uninitialized] #define EV_TO_KCAL_PER_MOL 23.060538 ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pwscfformat.cpp:90:22: note: 'pv' was declared here double enthalpy, pv; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pwscfformat.cpp:21:28: warning: 'enthalpy' may be used uninitialized in this function [-Wmaybe-uninitialized] #define EV_TO_KCAL_PER_MOL 23.060538 ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pwscfformat.cpp:90:12: note: 'enthalpy' was declared here double enthalpy, pv; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/crkformat.cpp: In static member function 'static bool OpenBabel::CRK2DFormat::ReadCRK(std::istream&, OpenBabel::OBMol&, const char*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/crkformat.cpp:304:48: warning: 'bondStyle' may be used uninitialized in this function [-Wmaybe-uninitialized] stbondStyle[numBonds]=bondStyle; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/crkformat.cpp:302:42: warning: 'bondTo' may be used uninitialized in this function [-Wmaybe-uninitialized] stbondTo[numBonds]=bondTo; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/crkformat.cpp:301:46: warning: 'bondFrom' may be used uninitialized in this function [-Wmaybe-uninitialized] stbondFrom[numBonds]=bondFrom; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/crkformat.cpp:287:36: warning: 'atomCharge' may be used uninitialized in this function [-Wmaybe-uninitialized] atm.SetFormalCharge((int)atomCharge); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/crkformat.cpp:286:49: warning: 'atomZ' may be used uninitialized in this function [-Wmaybe-uninitialized] atm.SetVector(atomX,atomY,atomZ); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/crkformat.cpp:286:49: warning: 'atomY' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/crkformat.cpp:286:49: warning: 'atomX' may be used uninitialized in this function [-Wmaybe-uninitialized] In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/mol.h:42:0, from /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/obmolecformat.h:34, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/crkformat.cpp:16: /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/atom.h:144:67: warning: 'atomNumber' may be used uninitialized in this function [-Wmaybe-uninitialized] void SetAtomicNum(int atomicnum) { _ele = (char)atomicnum; } ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/crkformat.cpp:241:16: note: 'atomNumber' was declared here int atomID,atomNumber; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/crkformat.cpp:283:44: warning: 'atomID' may be used uninitialized in this function [-Wmaybe-uninitialized] statomID[numAtoms++]=atomID; ^ [ 61%] Linking CXX shared module ../../lib64/pwscfformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Built target inchiformat make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xsfformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xsfformat.dir/depend.internal". Scanning dependencies of target xsfformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.o [ 61%] Built target pwscfformat cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dxsfformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/xsfformat.dir/xsfformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xsfformat.cpp make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gromos96format.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/gromos96format.dir/depend.internal". Scanning dependencies of target gromos96format make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgromos96format_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/gromos96format.dir/gromos96format.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gromos96format.cpp [ 61%] Linking CXX shared module ../../lib64/crkformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/crkformat.so CMakeFiles/crkformat.dir/crkformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 61%] Linking CXX shared module ../../lib64/xtcformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xtcformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/xtcformat.so CMakeFiles/xtcformat.dir/xtcformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 61%] Linking CXX shared module ../../lib64/gamessukformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessukformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gamessukformat.so CMakeFiles/gamessukformat.dir/gamessukformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Built target crkformat make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake --color= [ 61%] Built target xtcformat Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/dlpolyformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/dlpolyformat.dir/depend.internal". make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake --color= Scanning dependencies of target dlpolyformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build [ 61%] Built target gamessukformat make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fastsearchformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fastsearchformat.dir/depend.internal". make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake --color= Scanning dependencies of target fastsearchformat [ 61%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.o make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Ddlpolyformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/dlpolyformat.dir/dlpolyformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/dlpolyformat.cpp make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfastsearchformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/fastsearchformat.dir/fastsearchformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/fastsearchformat.cpp Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/featformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/featformat.dir/depend.internal". Scanning dependencies of target featformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Linking CXX shared module ../../lib64/cssrformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1 [ 61%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfeatformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/featformat.dir/featformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/featformat.cpp /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Built target cssrformat /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/fastsearchformat.cpp: In member function 'void OpenBabel::FastSearchFormat::AddPattern(std::vector&, OpenBabel::OBMol, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/fastsearchformat.cpp:627:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(idx>=patternMol.NumBonds()) ^ make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fingerprintformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/fingerprintformat.dir/depend.internal". Scanning dependencies of target fingerprintformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 61%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfingerprintformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/fingerprintformat.dir/fingerprintformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/fingerprintformat.cpp [ 62%] Linking CXX shared module ../../lib64/gromos96format.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 62%] Built target gromos96format make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/freefracformat.dir/depend.internal". 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Scanning dependencies of target freefracformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 62%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfreefracformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/freefracformat.dir/freefracformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/freefracformat.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/dlpolyformat.cpp: In member function 'bool OpenBabel::DlpolyInputReader::ParseUnitCell(std::istream&, OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/dlpolyformat.cpp:147:10: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok; ^ [ 62%] Linking CXX shared module ../../lib64/xsfformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/xsfformat.so CMakeFiles/xsfformat.dir/xsfformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 62%] Built target xsfformat make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pcmodelformat.dir/depend.internal". 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Scanning dependencies of target gaussformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 64%] Built target fastsearchformat make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake --color= [ 64%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgaussformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/gaussformat.dir/gaussformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gaussformat.cpp Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/lmpdatformat.dir/depend.internal". 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Scanning dependencies of target lmpdatformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 64%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dlmpdatformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/lmpdatformat.dir/lmpdatformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/lmpdatformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 64%] Built target freefracformat make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mmcifformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mmcifformat.dir/depend.internal". Scanning dependencies of target mmcifformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 65%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmmcifformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/mmcifformat.dir/mmcifformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mmcifformat.cpp [ 65%] Linking CXX shared module ../../lib64/cifformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cifformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cifformat.so CMakeFiles/cifformat.dir/cifformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 66%] Linking CXX shared module ../../lib64/pcmodelformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gaussformat.cpp: In member function 'virtual bool OpenBabel::GaussianOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gaussformat.cpp:328:26: warning: left operand of comma operator has no effect [-Wunused-value] for(unsigned i=0; i<115, ifs; ++i) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/lmpdatformat.cpp: In member function 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/lmpdatformat.cpp:271:13: warning: unused variable 'length' [-Wunused-variable] double length=cmax-cmin; ^ make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 66%] Built target cifformat make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/zindoformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/zindoformat.dir/depend.internal". /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/lmpdatformat.cpp:361:11: warning: unused variable 'atomid' [-Wunused-variable] int atomid=5; ^ Scanning dependencies of target zindoformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/lmpdatformat.cpp:362:14: warning: unused variable 'charge' [-Wunused-variable] double charge=0.5; ^ [ 66%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dzindoformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/zindoformat.dir/zindoformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/zindoformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 66%] Built target pcmodelformat make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mmodformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mmodformat.dir/depend.internal". Scanning dependencies of target mmodformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 66%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmmodformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/mmodformat.dir/mmodformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mmodformat.cpp [ 67%] Linking CXX shared module ../../lib64/zindoformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/zindoformat.so CMakeFiles/zindoformat.dir/zindoformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 67%] Linking CXX shared module ../../lib64/dlpolyformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlpolyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/dlpolyformat.so CMakeFiles/dlpolyformat.dir/dlpolyformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/groformat.cpp: In member function 'virtual bool OpenBabel::GROFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/groformat.cpp:273:25: warning: 'res' may be used uninitialized in this function [-Wmaybe-uninitialized] res->AddAtom(atom); ^ make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 67%] Built target zindoformat make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/rsmiformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/rsmiformat.dir/depend.internal". Scanning dependencies of target rsmiformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 67%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Drsmiformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/rsmiformat.dir/rsmiformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/rsmiformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 67%] Built target dlpolyformat make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/moldenformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/moldenformat.dir/depend.internal". Scanning dependencies of target moldenformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 67%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmoldenformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/moldenformat.dir/moldenformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/moldenformat.cpp [ 67%] Linking CXX shared module ../../lib64/mmodformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mmodformat.so CMakeFiles/mmodformat.dir/mmodformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 67%] Linking CXX shared module ../../lib64/groformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/groformat.so CMakeFiles/groformat.dir/groformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 67%] Built target mmodformat make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cmlformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/cmlformat.dir/depend.internal". Scanning dependencies of target cmlformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 68%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcmlformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/cmlformat.dir/xml/cmlformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 68%] Built target groformat make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/rxnformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/rxnformat.dir/depend.internal". Scanning dependencies of target rxnformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 69%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Drxnformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/rxnformat.dir/rxnformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/rxnformat.cpp [ 69%] Linking CXX shared module ../../lib64/lmpdatformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 69%] Built target lmpdatformat make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mpdformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mpdformat.dir/depend.internal". Scanning dependencies of target mpdformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 69%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmpdformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/mpdformat.dir/mpdformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mpdformat.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/rxnformat.cpp: In member function 'virtual bool OpenBabel::RXNFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/rxnformat.cpp:228:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i=0;iNumReactants();i++) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/rxnformat.cpp:235:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i=0;iNumProducts();i++) ^ [ 69%] Linking CXX shared module ../../lib64/fchkformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fchkformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fchkformat.so CMakeFiles/fchkformat.dir/fchkformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gaussformat.cpp:761:33: warning: 'betaStart' may be used uninitialized in this function [-Wmaybe-uninitialized] for (unsigned int i = betaStart; i < initialSize; ++i) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gaussformat.cpp:754:9: warning: 'bHOMO' may be used uninitialized in this function [-Wmaybe-uninitialized] if (aHOMO == bHOMO) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gaussformat.cpp:755:67: warning: 'aHOMO' may be used uninitialized in this function [-Wmaybe-uninitialized] od->LoadClosedShellOrbitals(orbitals, symmetries, aHOMO); ^ In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/mol.h:51:0, from /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/obmolecformat.h:34, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gaussformat.cpp:17: /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/generic.h:1014:22: warning: 'RotorType' may be used uninitialized in this function [-Wmaybe-uninitialized] type = RotorType; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/gaussformat.cpp:306:27: note: 'RotorType' was declared here OBRotationData::RType RotorType; ^ make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 69%] Built target fchkformat make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mpqcformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/mpqcformat.dir/depend.internal". /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlformat.cpp: In member function 'bool OpenBabel::CMLFormat::DoHCounts()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlformat.cpp:929:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(unsigned i=0;isecond - explH;++i) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlformat.cpp: In member function 'void OpenBabel::CMLFormat::WriteMetadataList(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlformat.cpp:1232:26: warning: unused variable 'C_TITLE' [-Wunused-variable] static const xmlChar C_TITLE[] = "title"; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlformat.cpp: In member function 'std::__cxx11::string OpenBabel::CMLFormat::getTimestr()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlformat.cpp:1282:12: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] size_t time_res; /* Result of strftime */ ^ Scanning dependencies of target mpqcformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlformat.cpp: In member function 'virtual bool OpenBabel::CMLFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlformat.cpp:1329:26: warning: unused variable 'C_DESCRIPTION' [-Wunused-variable] static const xmlChar C_DESCRIPTION[] = "description"; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlformat.cpp: In member function 'bool OpenBabel::CMLFormat::WriteVibrationData(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/cmlformat.cpp:2281:26: warning: unused variable 'C_SCALAR' [-Wunused-variable] static const xmlChar C_SCALAR[] = "scalar"; ^ [ 69%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmpqcformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/mpqcformat.dir/mpqcformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mpqcformat.cpp [ 69%] Linking CXX shared module ../../lib64/mmcifformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mpdformat.cpp: In member function 'virtual bool OpenBabel::MPDFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/mpdformat.cpp:204:42: warning: variable 'idx_true' set but not used [-Wunused-but-set-variable] bool xml_true=false, pre_true=false, idx_true=false; ^ make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 69%] Linking CXX shared module ../../lib64/rsmiformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rsmiformat.dir/link.txt --verbose=1 [ 69%] Built target mmcifformat make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/rsmiformat.so CMakeFiles/rsmiformat.dir/rsmiformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/crystal09format.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/crystal09format.dir/depend.internal". Scanning dependencies of target crystal09format make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 70%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcrystal09format_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/crystal09format.dir/crystal09format.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/crystal09format.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 70%] Built target rsmiformat make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pqrformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pqrformat.dir/depend.internal". Scanning dependencies of target pqrformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 70%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpqrformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/pqrformat.dir/pqrformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pqrformat.cpp [ 70%] Linking CXX shared module ../../lib64/gaussformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 70%] Built target gaussformat make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/msiformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/msiformat.dir/depend.internal". Scanning dependencies of target msiformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 70%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmsiformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/msiformat.dir/msiformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/msiformat.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pqrformat.cpp: In function 'double OpenBabel::parseAtomCharge(char*, OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pqrformat.cpp:196:13: warning: unused variable 'atom' [-Wunused-variable] OBAtom *atom = mol.GetAtom(mol.NumAtoms()); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pqrformat.cpp: In function 'double OpenBabel::parseAtomRadius(char*, OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pqrformat.cpp:211:13: warning: unused variable 'atom' [-Wunused-variable] OBAtom *atom = mol.GetAtom(mol.NumAtoms()); ^ [ 71%] Linking CXX shared module ../../lib64/mpdformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpdformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 71%] Linking CXX shared module ../../lib64/rxnformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/rxnformat.so CMakeFiles/rxnformat.dir/rxnformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 71%] Built target mpdformat make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/msmsformat.dir/depend.internal". 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Scanning dependencies of target msmsformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 72%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmsmsformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/msmsformat.dir/msmsformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/msmsformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 72%] Built target rxnformat make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pdbqtformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/pdbqtformat.dir/depend.internal". Scanning dependencies of target pdbqtformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 72%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpdbqtformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/pdbqtformat.dir/pdbqtformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pdbqtformat.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pdbqtformat.cpp: In function 'bool OpenBabel::OutputTree(OpenBabel::OBMol&, std::ostream&, std::map&, unsigned int, bool, bool)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pdbqtformat.cpp:567:20: warning: unused variable 'child' [-Wunused-variable] unsigned int child=i; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pdbqtformat.cpp: In function 'bool OpenBabel::Separate_preserve_charges(OpenBabel::OBMol&, std::vector&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pdbqtformat.cpp:733:9: warning: unused variable 'fragments' [-Wunused-variable] int fragments = 0; ^ [ 72%] Linking CXX shared module ../../lib64/mpqcformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 72%] Linking CXX shared module ../../lib64/moldenformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldenformat.dir/link.txt --verbose=1 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/msiformat.cpp: In member function 'virtual bool OpenBabel::MSIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/msiformat.cpp:71:17: warning: unused variable 'title' [-Wunused-variable] const char* title = pConv->GetTitle(); ^ /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 72%] Built target mpqcformat make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/molproformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/molproformat.dir/depend.internal". [ 72%] Linking CXX shared module ../../lib64/pqrformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1 Scanning dependencies of target molproformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 72%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmolproformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/molproformat.dir/molproformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/molproformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 72%] Built target moldenformat make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/posformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/posformat.dir/depend.internal". Scanning dependencies of target posformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 72%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dposformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/posformat.dir/posformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/posformat.cpp [ 72%] Linking CXX shared module ../../lib64/msmsformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msmsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/msmsformat.so CMakeFiles/msmsformat.dir/msmsformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 72%] Built target pqrformat make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/shelxformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/shelxformat.dir/depend.internal". Scanning dependencies of target shelxformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 72%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dshelxformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/shelxformat.dir/shelxformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/shelxformat.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 72%] Built target msmsformat make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/unichemformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/unichemformat.dir/depend.internal". Scanning dependencies of target unichemformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 73%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dunichemformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/unichemformat.dir/unichemformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/unichemformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/mol.h:51:0, from /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/obmolecformat.h:34, from /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/msiformat.cpp:15: /usr/src/RPM/BUILD/openbabel-2.3.2/include/openbabel/generic.h:355:64: warning: 'sg' may be used uninitialized in this function [-Wmaybe-uninitialized] void SetSpaceGroup(const SpaceGroup* sg) { _spaceGroup = sg; } ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/msiformat.cpp:106:23: note: 'sg' was declared here const SpaceGroup *sg; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/msiformat.cpp:191:49: warning: 'atom' may be used uninitialized in this function [-Wmaybe-uninitialized] atof(vs[5].c_str())); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/msiformat.cpp:235:24: warning: 'bondOrder' may be used uninitialized in this function [-Wmaybe-uninitialized] mol.AddBond(startBondAtom - 1, endBondAtom - 1, bondOrder); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/msiformat.cpp:235:56: warning: 'endBondAtom' may be used uninitialized in this function [-Wmaybe-uninitialized] mol.AddBond(startBondAtom - 1, endBondAtom - 1, bondOrder); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/msiformat.cpp:235:39: warning: 'startBondAtom' may be used uninitialized in this function [-Wmaybe-uninitialized] mol.AddBond(startBondAtom - 1, endBondAtom - 1, bondOrder); ^ [ 73%] Linking CXX shared module ../../lib64/msiformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/msiformat.so CMakeFiles/msiformat.dir/msiformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 73%] Linking CXX shared module ../../lib64/crystal09format.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystal09format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 73%] Linking CXX shared module ../../lib64/unichemformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/unichemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 73%] Built target msiformat make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/xedformat.dir/depend.internal". 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Scanning dependencies of target xedformat make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 73%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dxedformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/xedformat.dir/xedformat.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xedformat.cpp [ 73%] Built target unichemformat make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake --color= make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/CMakeFiles/chemdrawcdx.dir/depend.internal". 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Scanning dependencies of target chemdrawcdx make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 73%] Built target crystal09format make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/tools /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/tools /usr/src/RPM/BUILD/openbabel-2.3.2/tools/CMakeFiles/obgrep.dir/DependInfo.cmake --color= [ 74%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemdrawcdx_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/chemdrawcdx.cpp Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/tools/CMakeFiles/obgrep.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/tools/CMakeFiles/obgrep.dir/depend.internal". 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Scanning dependencies of target obgrep make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 74%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/obgrep.dir/obgrep.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/tools/obgrep.cpp [ 74%] Linking CXX shared module ../../lib64/xedformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xedformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/xedformat.so CMakeFiles/xedformat.dir/xedformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 74%] Built target xedformat make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/tools /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/tools /usr/src/RPM/BUILD/openbabel-2.3.2/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/tools/CMakeFiles/obspectrophore.dir/depend.internal". 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Scanning dependencies of target obspectrophore make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 74%] Building CXX object tools/CMakeFiles/obspectrophore.dir/obspectrophore.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/obspectrophore.dir/obspectrophore.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/tools/obspectrophore.cpp [ 74%] Linking CXX shared module ../../lib64/posformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/posformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/posformat.so CMakeFiles/posformat.dir/posformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz [ 74%] Linking CXX shared module ../../lib64/shelxformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 74%] Built target posformat make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/tools /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/tools /usr/src/RPM/BUILD/openbabel-2.3.2/tools/CMakeFiles/obrotate.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/tools/CMakeFiles/obrotate.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/tools/CMakeFiles/obrotate.dir/depend.internal". 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Scanning dependencies of target obrotate make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 74%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/obrotate.dir/obrotate.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/tools/obrotate.cpp [ 74%] Linking CXX executable ../bin/obgrep cd /usr/src/RPM/BUILD/openbabel-2.3.2/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgrep.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/obgrep.dir/obgrep.o -o ../bin/obgrep -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 74%] Built target shelxformat make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/tools /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/tools /usr/src/RPM/BUILD/openbabel-2.3.2/tools/CMakeFiles/obrotamer.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/tools/CMakeFiles/obrotamer.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/tools/CMakeFiles/obrotamer.dir/depend.internal". 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Scanning dependencies of target obabel make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 77%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.o /usr/src/RPM/BUILD/openbabel-2.3.2/tools/obrotate.cpp: In function 'int main(int, char**)': /usr/src/RPM/BUILD/openbabel-2.3.2/tools/obrotate.cpp:151:57: warning: 'a4' may be used uninitialized in this function [-Wmaybe-uninitialized] mol.SetTorsion(a1, a2, a3, a4, angle * DEG_TO_RAD); ^ cd /usr/src/RPM/BUILD/openbabel-2.3.2/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/obabel.dir/obabel.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/tools/obabel.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/tools/obrotate.cpp:146:28: warning: 'a3' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( !a2->IsConnected(a3) ) { ^ /usr/src/RPM/BUILD/openbabel-2.3.2/tools/obrotate.cpp:146:28: warning: 'a2' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.3.2/tools/obrotate.cpp:151:57: warning: 'a1' may be used uninitialized in this function [-Wmaybe-uninitialized] mol.SetTorsion(a1, a2, a3, a4, angle * DEG_TO_RAD); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pdbqtformat.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/pdbqtformat.cpp:686:16: warning: 'unsigned int OpenBabel::AtomsSoFar(const std::map&, unsigned int)' defined but not used [-Wunused-function] unsigned int AtomsSoFar(const map & tree, unsigned int depth) ^ [ 77%] Linking CXX executable ../bin/obspectrophore cd /usr/src/RPM/BUILD/openbabel-2.3.2/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obspectrophore.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/obspectrophore.dir/obspectrophore.o -o ../bin/obspectrophore -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz [ 77%] Linking CXX executable ../bin/obrotate cd /usr/src/RPM/BUILD/openbabel-2.3.2/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotate.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/obrotate.dir/obrotate.o -o ../bin/obrotate -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz [ 77%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/xml.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcmlformat_EXPORTS -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.3.2/include/inchi -I/usr/include/libxml2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/cmlformat.dir/xml/xml.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats/xml/xml.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 77%] Built target obrotate make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/tools /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/tools /usr/src/RPM/BUILD/openbabel-2.3.2/tools/CMakeFiles/obminimize.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/tools/CMakeFiles/obminimize.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/tools/CMakeFiles/obminimize.dir/depend.internal". 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Scanning dependencies of target roundtrip make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 79%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/lib/\"" -o CMakeFiles/roundtrip.dir/roundtrip.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/test/roundtrip.cpp [ 79%] Linking CXX executable ../bin/obabel cd /usr/src/RPM/BUILD/openbabel-2.3.2/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obabel.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/obabel.dir/obabel.o -o ../bin/obabel -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz [ 80%] Linking CXX executable ../bin/obfit cd /usr/src/RPM/BUILD/openbabel-2.3.2/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obfit.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/obfit.dir/obfit.o -o ../bin/obfit -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz [ 80%] Linking CXX executable ../bin/obprobe cd /usr/src/RPM/BUILD/openbabel-2.3.2/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obprobe.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/obprobe.dir/obprobe.o -o ../bin/obprobe -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 80%] Linking CXX shared module ../../lib64/cmlformat.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlformat.dir/link.txt --verbose=1 [ 80%] Built target obabel make -f test/CMakeFiles/test_ringtest.dir/build.make test/CMakeFiles/test_ringtest.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_ringtest.dir/DependInfo.cmake --color= /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cmlformat.so CMakeFiles/cmlformat.dir/xml/cmlformat.o CMakeFiles/cmlformat.dir/xml/xml.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm -lxml2 ../../lib64/libopenbabel.so.4.0.2 -lcairo -lc -lm -ldl -lz Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_ringtest.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_ringtest.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_ringtest.dir/depend.internal". Scanning dependencies of target test_ringtest make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f test/CMakeFiles/test_ringtest.dir/build.make test/CMakeFiles/test_ringtest.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 80%] Building CXX object test/CMakeFiles/test_ringtest.dir/ringtest.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/lib/\"" -o CMakeFiles/test_ringtest.dir/ringtest.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/test/ringtest.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 80%] Linking CXX executable ../bin/obgen [ 80%] Built target obprobe cd /usr/src/RPM/BUILD/openbabel-2.3.2/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgen.dir/link.txt --verbose=1 make -f test/CMakeFiles/test_uniqueid.dir/build.make test/CMakeFiles/test_uniqueid.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_uniqueid.dir/DependInfo.cmake --color= /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/obgen.dir/obgen.o -o ../bin/obgen -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_uniqueid.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_uniqueid.dir/depend.internal". 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Scanning dependencies of target test_uniqueid make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f test/CMakeFiles/test_uniqueid.dir/build.make test/CMakeFiles/test_uniqueid.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 80%] Building CXX object test/CMakeFiles/test_uniqueid.dir/uniqueidtest.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/lib/\"" -o CMakeFiles/test_uniqueid.dir/uniqueidtest.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/test/uniqueidtest.cpp [ 80%] Built target cmlformat make -f test/CMakeFiles/test_smilesmatch.dir/build.make test/CMakeFiles/test_smilesmatch.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_smilesmatch.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_smilesmatch.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_smilesmatch.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_smilesmatch.dir/depend.internal". Scanning dependencies of target test_smilesmatch make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f test/CMakeFiles/test_smilesmatch.dir/build.make test/CMakeFiles/test_smilesmatch.dir/build make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 81%] Building CXX object test/CMakeFiles/test_smilesmatch.dir/smilesmatch.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/lib/\"" -o CMakeFiles/test_smilesmatch.dir/smilesmatch.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/test/smilesmatch.cpp [ 81%] Built target obgen make -f test/CMakeFiles/test_stereoperception.dir/build.make test/CMakeFiles/test_stereoperception.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_stereoperception.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_stereoperception.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_stereoperception.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_stereoperception.dir/depend.internal". Scanning dependencies of target test_stereoperception make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f test/CMakeFiles/test_stereoperception.dir/build.make test/CMakeFiles/test_stereoperception.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 81%] Built target obfit make -f test/CMakeFiles/test_canonstable.dir/build.make test/CMakeFiles/test_canonstable.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_canonstable.dir/DependInfo.cmake --color= [ 81%] Building CXX object test/CMakeFiles/test_stereoperception.dir/stereoperceptiontest.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/lib/\"" -o CMakeFiles/test_stereoperception.dir/stereoperceptiontest.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/test/stereoperceptiontest.cpp Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_canonstable.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_canonstable.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_canonstable.dir/depend.internal". Scanning dependencies of target test_canonstable make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f test/CMakeFiles/test_canonstable.dir/build.make test/CMakeFiles/test_canonstable.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 81%] Building CXX object test/CMakeFiles/test_canonstable.dir/canonstabletest.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/lib/\"" -o CMakeFiles/test_canonstable.dir/canonstabletest.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/test/canonstabletest.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/test/stereoperceptiontest.cpp:245:3: warning: multi-line comment [-Wcomment] // / \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/stereoperceptiontest.cpp:260:3: warning: multi-line comment [-Wcomment] // / \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/stereoperceptiontest.cpp:275:3: warning: multi-line comment [-Wcomment] // \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/stereoperceptiontest.cpp:277:3: warning: multi-line comment [-Wcomment] // \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/stereoperceptiontest.cpp:300:3: warning: multi-line comment [-Wcomment] // \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/stereoperceptiontest.cpp:317:3: warning: multi-line comment [-Wcomment] // / \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/stereoperceptiontest.cpp:327:3: warning: multi-line comment [-Wcomment] // / \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/stereoperceptiontest.cpp:337:3: warning: multi-line comment [-Wcomment] // / \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/stereoperceptiontest.cpp:354:3: warning: multi-line comment [-Wcomment] // / \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/stereoperceptiontest.cpp:365:3: warning: multi-line comment [-Wcomment] // / \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/stereoperceptiontest.cpp:378:3: warning: multi-line comment [-Wcomment] // / \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/stereoperceptiontest.cpp:389:3: warning: multi-line comment [-Wcomment] // / \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/stereoperceptiontest.cpp:418:3: warning: multi-line comment [-Wcomment] // \ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/stereoperceptiontest.cpp:420:3: warning: multi-line comment [-Wcomment] // \ ^ [ 81%] Linking CXX executable ../bin/obprop cd /usr/src/RPM/BUILD/openbabel-2.3.2/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obprop.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/obprop.dir/obprop.o -o ../bin/obprop -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 81%] Built target obprop make -f test/CMakeFiles/test_phmodel.dir/build.make test/CMakeFiles/test_phmodel.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_phmodel.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_phmodel.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_phmodel.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_phmodel.dir/depend.internal". Scanning dependencies of target test_phmodel make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f test/CMakeFiles/test_phmodel.dir/build.make test/CMakeFiles/test_phmodel.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 81%] Building CXX object test/CMakeFiles/test_phmodel.dir/phmodel.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/lib/\"" -o CMakeFiles/test_phmodel.dir/phmodel.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/test/phmodel.cpp [ 81%] Linking CXX executable ../bin/test_smilesmatch cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_smilesmatch.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/test_smilesmatch.dir/smilesmatch.o -o ../bin/test_smilesmatch -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 81%] Built target test_smilesmatch make -f test/CMakeFiles/test_unitcell.dir/build.make test/CMakeFiles/test_unitcell.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_unitcell.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_unitcell.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_unitcell.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_unitcell.dir/depend.internal". Scanning dependencies of target test_unitcell make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f test/CMakeFiles/test_unitcell.dir/build.make test/CMakeFiles/test_unitcell.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 81%] Linking CXX executable ../bin/test_ringtest cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_ringtest.dir/link.txt --verbose=1 [ 81%] Building CXX object test/CMakeFiles/test_unitcell.dir/unitcell.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/lib/\"" -o CMakeFiles/test_unitcell.dir/unitcell.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/test/unitcell.cpp /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/test_ringtest.dir/ringtest.o -o ../bin/test_ringtest -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz In file included from /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp:26:0: /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/./selformats.h: In member function 'bool ActiveFormats::Add(wxString&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/./selformats.h:82:52: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] return (ActiveFormatsString.find(format+_T(';')) != -1); ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp: In member function 'virtual bool OBGUIApp::OnInit()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp:126:21: warning: unused variable 'splash' [-Wunused-variable] wxSplashScreen* splash = new wxSplashScreen(bitmap, ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp: In member function 'void OBGUIFrame::DisplayInputFiles(wxArrayString)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp:720:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i=0;iGetCount();iSel++) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp: In member function 'wxString OBGUIFrame::ShortenedPath(const wxString&, const wxWindow&, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp:888:10: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(pos1==wxNOT_FOUND || pos1+1 == path.length()) return path; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp:890:10: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(pos1==wxNOT_FOUND || pos1+1 == path.length()) return path; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp:897:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(pos2==wxNOT_FOUND || pos2+1 == tpath.length()) return path; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp:900:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(tpath.find_first_of(_T("/\\"), pos2+1)==wxNOT_FOUND) return path; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp: In member function 'void OBGUIFrame::GetAvailableFormats()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp:954:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(pos!=wxString::npos) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp:959:11: warning: variable 'n' set but not used [-Wunused-but-set-variable] int n; ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp: In member function 'void OBGUIFrame::MakePluginsMenu()': /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp:1055:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int itop=0; itop < topvec.size(); ++itop) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp:1063:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int isub=0; isub < subvec.size(); ++isub) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp: In member function 'void CFilenames::OnKeyPress(wxKeyEvent&)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp:1141:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(nameWithWildcard.find_first_of(_T("*?"))==wxNOT_FOUND) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/OBGUI.cpp:1157:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i=0;i::type Packet; ^ [ 91%] Linking CXX executable ../bin/test_mol cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mol.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/test_mol.dir/mol.o -o ../bin/test_mol -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz [ 91%] Linking CXX executable ../bin/test_lssr cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_lssr.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/test_lssr.dir/lssrtest.o -o ../bin/test_lssr -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 91%] Built target test_mol make -f test/CMakeFiles/test_isomorphism.dir/build.make test/CMakeFiles/test_isomorphism.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_isomorphism.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_isomorphism.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_isomorphism.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_isomorphism.dir/depend.internal". Scanning dependencies of target test_isomorphism make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f test/CMakeFiles/test_isomorphism.dir/build.make test/CMakeFiles/test_isomorphism.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 91%] Building CXX object test/CMakeFiles/test_isomorphism.dir/isomorphismtest.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/lib/\"" -o CMakeFiles/test_isomorphism.dir/isomorphismtest.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/test/isomorphismtest.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 91%] Built target test_lssr make -f test/CMakeFiles/test_aromatest.dir/build.make test/CMakeFiles/test_aromatest.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_aromatest.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_aromatest.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_aromatest.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_aromatest.dir/depend.internal". [ 92%] Linking CXX executable ../bin/test_invalidsmarts [ 92%] Linking CXX executable ../bin/test_bond cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bond.dir/link.txt --verbose=1 cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_invalidsmarts.dir/link.txt --verbose=1 Scanning dependencies of target test_aromatest make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f test/CMakeFiles/test_aromatest.dir/build.make test/CMakeFiles/test_aromatest.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/test_invalidsmarts.dir/invalidsmarts.o -o ../bin/test_invalidsmarts -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz [ 93%] Building CXX object test/CMakeFiles/test_aromatest.dir/aromatest.o /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/test_bond.dir/bond.o -o ../bin/test_bond -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/lib/\"" -o CMakeFiles/test_aromatest.dir/aromatest.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/test/aromatest.cpp /usr/src/RPM/BUILD/openbabel-2.3.2/test/isomorphismtest.cpp:118:3: warning: multi-line comment [-Wcomment] // /\ /\ /\ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/isomorphismtest.cpp:169:3: warning: multi-line comment [-Wcomment] // /\ /\ /\ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/isomorphismtest.cpp:191:3: warning: multi-line comment [-Wcomment] // /\ /\ /\ ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/optswx.cpp: In member function 'bool DynOptionswx::Construct(const char*, const char*, int)': /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/optswx.cpp:223:47: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(pdef=strcasestr(pCaption,"default")) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/src/GUI/optswx.cpp:226:17: warning: unused variable 'tok' [-Wunused-variable] char* tok=strtok(pdef," :-\t(0) : report_error(#exp, __FILE__, __LINE__, FUNCTION_SIGNATURE, false) ) ^ /usr/src/RPM/BUILD/openbabel-2.3.2/test/graphsymtest.cpp:115:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n != numberOfClasses) { ^ [ 98%] Linking CXX executable ../bin/test_smartstest cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_smartstest.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/test_smartstest.dir/smartstest.o -o ../bin/test_smartstest -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz [ 99%] Linking CXX executable ../bin/test_formalcharge cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_formalcharge.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/test_formalcharge.dir/formalcharge.o -o ../bin/test_formalcharge -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 99%] Built target test_smartstest make -f test/CMakeFiles/test_logp_psa.dir/build.make test/CMakeFiles/test_logp_psa.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/test /usr/src/RPM/BUILD/openbabel-2.3.2/test/CMakeFiles/test_logp_psa.dir/DependInfo.cmake --color= Dependee 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Scanning dependencies of target test_residue make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make -f test/CMakeFiles/test_residue.dir/build.make test/CMakeFiles/test_residue.dir/build make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 99%] Building CXX object test/CMakeFiles/test_residue.dir/residue.o cd /usr/src/RPM/BUILD/openbabel-2.3.2/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/usr/src/RPM/BUILD/openbabel-2.3.2/include -I/usr/src/RPM/BUILD/openbabel-2.3.2/data -I/usr/include/eigen2 -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr//usr/lib64/openbabel/2.3.2\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.3.2/lib/\"" -o CMakeFiles/test_residue.dir/residue.o -c /usr/src/RPM/BUILD/openbabel-2.3.2/test/residue.cpp make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 99%] Built target test_internalcoord make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/depend make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' cd /usr/src/RPM/BUILD/openbabel-2.3.2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/scripts /usr/src/RPM/BUILD/openbabel-2.3.2 /usr/src/RPM/BUILD/openbabel-2.3.2/scripts /usr/src/RPM/BUILD/openbabel-2.3.2/scripts/CMakeFiles/bindings_python.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.3.2/scripts/CMakeFiles/bindings_python.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.3.2/scripts/CMakeFiles/bindings_python.dir/depend.internal". 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--verbose=1 /usr/bin/c++ -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc CMakeFiles/test_smiles.dir/smilestest.o -o ../bin/test_smiles -rdynamic ../lib64/libopenbabel.so.4.0.2 -lm -ldl -lz make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [100%] Built target test_smiles /usr/src/RPM/BUILD/openbabel-2.3.2/scripts/python/openbabel-python.cpp: In function 'void SWIG_InitializeModule(void*)': /usr/src/RPM/BUILD/openbabel-2.3.2/scripts/python/openbabel-python.cpp:57060:21: warning: statement has no effect [-Wunused-value] (void *)clientdata; ^ [100%] Linking CXX shared module ../lib64/_openbabel.so cd /usr/src/RPM/BUILD/openbabel-2.3.2/scripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/bindings_python.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -Wall -g -O2 -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 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make[1]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 14%] Built target openbabel make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 15%] Built target plugin_fingerprints make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 17%] Built target plugin_charges make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 18%] Built target plugin_forcefields make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Leaving directory `/usr/src/RPM/BUILD/openbabel-2.3.2' [ 19%] Built target plugin_descriptors make[2]: Entering directory `/usr/src/RPM/BUILD/openbabel-2.3.2' make[2]: Leaving directory 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'./usr/lib64/openbabel/2.3.2/cccformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/carformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/cacheformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/cacaoformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/boxformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/bgfformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/balstformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/amberformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/acrformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/alchemyformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/MCDLformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/PQSformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/CSRformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/APIInterface.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/gamessukformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/zindoformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/xsfformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/vaspformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/turbomoleformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/qchemformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/pwscfformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/nwchemformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/mopacformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/molproformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/jaguarformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/hinformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/gulpformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/gausszmatformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/gausscubeformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/gaussformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/gamessformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/fhiaimsformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/fchkformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/dmolformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/crystal09format.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/castepformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/adfformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/abinitformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/acesformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/pngformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/titleformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/textformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/svgformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/reportformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/povrayformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/nulformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/molreport.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/MNAformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/copyformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/asciiformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/inchiformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/pdbformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/mol2format.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/mdlformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/smilesformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/plugin_charges.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/plugin_ops.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/plugin_forcefields.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/plugin_fingerprints.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.3.2/plugin_descriptors.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/libopenbabel.so.4.0.2' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) Verifying and fixing files in /usr/src/tmp/openbabel-buildroot (binconfig,pkgconfig,libtool,desktop) Compressing files in /usr/src/tmp/openbabel-buildroot (auto) removed '/usr/src/tmp/openbabel-buildroot/usr/share/man/man1/obabel.1' '/usr/src/tmp/openbabel-buildroot/usr/share/man/man1/obabel.1.xz' -> 'babel.1.xz' removed '/usr/src/tmp/openbabel-buildroot/usr/share/man/man1/obabel.1.xz' '/usr/src/tmp/openbabel-buildroot/usr/share/man/man1/obabel.1.xz' -> 'babel.1.xz' Adjusting library links in /usr/src/tmp/openbabel-buildroot ./usr/lib64: libopenbabel.so.4 -> libopenbabel.so.4.0.2 libinchi.so.0 -> libinchi.so.0.4.1 Verifying ELF objects in /usr/src/tmp/openbabel-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) Bytecompiling python modules in /usr/src/tmp/openbabel-buildroot using /usr/bin/python compile /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/openbabel.py compile /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py Bytecompiling python modules with optimization in /usr/src/tmp/openbabel-buildroot using /usr/bin/python -O compile /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/openbabel.py compile /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py Hardlinking identical .pyc and .pyo files './usr/lib64/python2.7/site-packages/pybel.pyo' => './usr/lib64/python2.7/site-packages/pybel.pyc' './usr/lib64/python2.7/site-packages/openbabel.pyo' => './usr/lib64/python2.7/site-packages/openbabel.pyc' Processing files: openbabel-2.3.2-alt2 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.60089 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd openbabel-2.3.2 + DOCDIR=/usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.3.2 + export DOCDIR + rm -rf /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.3.2 + /bin/mkdir -p /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.3.2 + cp -prL AUTHORS ChangeLog.1.x ChangeLog.gz README THANKS /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.3.2 + chmod -R go-w /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.3.2 + chmod -R a+rX /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.3.2 + cp -prL doc/FAQ.html doc/README.dioxin.pov doc/README.povray doc/dioxin.inc doc/dioxin.mol2 doc/dioxin.png doc/dioxin.pov /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.3.2 + chmod -R go-w /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.3.2 + chmod -R a+rX /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.3.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.LczFjD find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.7NiwbH find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) Requires: /lib64/ld-linux-x86-64.so.2, libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libgcc_s.so.1(GCC_3.0)(64bit), libopenbabel.so.4()(64bit) >= set:piPkeuUAuwVbsU7IMS0FFKZkY4jntEoMrmx3tid7UgcMQ6goauIM2vdNM663OjoiAnmKCGFAKAbz6KR86oStZzk17p3jnIOS4mYVoGicZgQC7ZmPO9O8u2U7JSUcEYIrozZD7PiFbYC9U9PTcS79OjMzFa8ReG2Ool7V2F59Acqe8kHBQfxHM6JkA54R1tUhH6bucyjiZ8bhuSqzDsDEfpCKAZJlwZfG0dPaHZ56vLUIPZ1xQGnDd9WmYbHXK5JZfdciWw7XhTv8tZoZ7xviv8Q5E5GMX4cVjnoe1ZiWig, libstdc++.so.6(CXXABI_1.3)(64bit), libstdc++.so.6(GLIBCXX_3.4)(64bit), libstdc++.so.6(GLIBCXX_3.4.11)(64bit), libstdc++.so.6(GLIBCXX_3.4.20)(64bit), libstdc++.so.6(GLIBCXX_3.4.21)(64bit), libstdc++.so.6(GLIBCXX_3.4.9)(64bit), libwx_baseu-2.8.so.0()(64bit) >= set:pi4nLt9ZasXNo6qVl7U5tUO3KXjS5hGXpZ4fKiOypSHHv4ZwObCN571JgRZB5EDhithXfem5UIS83iWuvHLZEVzK3end1J5pFG6K2DWE0a0lnggxC8PpKcVxgqXQZDv7mHPnPS4i1ndNIWtZ6pSPG7gEW24eiVyMEmQvCnCwDQN83wDcaBypz4YBhxtBg126NNf3pGmKErZDjLUmGk4E6VnzZkAAT8FmbTPnUqStCjGn5mXC1XUp6nF0vZqf9S76HRGTyUDRvznzBlZg7EXDhTr3TZ4VR9lShkVNke8H97PbDuVtoOqlXB7IaYGKs1PqeUE6wJZ31, libwx_baseu-2.8.so.0(WXU_2.8)(64bit), libwx_gtk2u_adv-2.8.so.0()(64bit) >= set:on2Dt0, libwx_gtk2u_adv-2.8.so.0(WXU_2.8)(64bit), libwx_gtk2u_core-2.8.so.0()(64bit) >= set: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, libwx_gtk2u_core-2.8.so.0(WXU_2.8)(64bit), libwx_gtk2u_core-2.8.so.0(WXU_2.8.5)(64bit), rtld(GNU_HASH), rtld(GNU_UNIQUE) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.jkAfsY Creating openbabel-debuginfo package Processing files: libopenbabel-2.3.2-alt2 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.hFfQGi find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) lib.prov: /usr/src/tmp/openbabel-buildroot/usr/lib64/libinchi.so.0: 901 symbols, 20 bpp warning: hash collision: RemoveLastGroupFromBnStruct x_close_line lib.prov: /usr/src/tmp/openbabel-buildroot/usr/lib64/libopenbabel.so.4: 2771 symbols, 22 bpp warning: hash collision: _ZN9OpenBabel8OBLocaleD1Ev _ZNSt6vectorIPN9OpenBabel6OBAtomESaIS2_EEaSERKS4_ warning: hash collision: _ZN9OpenBabel5OBMol8IsChiralEv _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPPN9OpenBabel6OBRingESt6vectorIS4_SaIS4_EEEElS4_NS0_5__ops15_Iter_comp_iterIPFbPKS3_SD_EEEEvT_T0_SI_T1_T2_ Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.hDuPKF find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) Provides: libinchi.so.0()(64bit) = set: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, libopenbabel.so.4()(64bit) = set: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 Requires: libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libcairo.so.2()(64bit) >= set:mhZ4bKT9Rlaep0usgfeeY7a0yzx118s5RTQ1p3u00DEYtMHdYDiG4wfAZep0, libdl.so.2(GLIBC_2.2.5)(64bit), libgcc_s.so.1(GCC_3.0)(64bit), libgcc_s.so.1(GCC_3.4)(64bit), libm.so.6(GLIBC_2.2.5)(64bit), libstdc++.so.6(CXXABI_1.3)(64bit), libstdc++.so.6(GLIBCXX_3.4)(64bit), libstdc++.so.6(GLIBCXX_3.4.11)(64bit), libstdc++.so.6(GLIBCXX_3.4.15)(64bit), libstdc++.so.6(GLIBCXX_3.4.20)(64bit), libstdc++.so.6(GLIBCXX_3.4.21)(64bit), libstdc++.so.6(GLIBCXX_3.4.5)(64bit), libstdc++.so.6(GLIBCXX_3.4.9)(64bit), libxml2.so.2()(64bit) >= set:oifKYClhgDOqsHvQHTqghpZjZhYHWvoUeQ1SsoPjAmxIBQqtrxV4Ci1ZmZ5pFWRwsE7VJfSzWZpquEjesOiuXp1iKnNCwPSRxzODZGTR2, libxml2.so.2(LIBXML2_2.4.30)(64bit), libxml2.so.2(LIBXML2_2.5.0)(64bit), libxml2.so.2(LIBXML2_2.6.0)(64bit), libxml2.so.2(LIBXML2_2.6.5)(64bit), libz.so.1()(64bit) >= set:kgb6dgbWdAhpAO8J790tGE6, rtld(GNU_HASH), rtld(GNU_UNIQUE) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.lNO9Ie Creating libopenbabel-debuginfo package Processing files: libopenbabel-devel-2.3.2-alt2 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.dlEWPV find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.5elLKF find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/op.h:23:18: fatal error: string: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/op.h: cpp failed, trying c++ mode /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/xml.h:25:30: fatal error: libxml/xmlreader.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/xml.h: cpp failed /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/inchiformat.h:25:23: fatal error: inchi_api.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/inchiformat.h: cpp failed /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/math/align.h:26:22: fatal error: Eigen/Core: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/math/align.h: cpp failed Provides: pkgconfig(openbabel-2.0) = 2.3.2 Requires: libopenbabel = 2.3.2-alt2, /usr/lib64/libinchi.so.0, /usr/lib64/libopenbabel.so.4, /usr/lib64/pkgconfig Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.vkLE1K Processing files: python-module-openbabel-2.3.2-alt2 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.LwLmbT find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.3Dsy93 find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) python.req: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/openbabel.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/openbabel.py: line=4 IGNORE (for REQ=slight and deep=12) module=dl /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/openbabel.py: line=6 IGNORE (for REQ=slight and deep=12) module=DLFCN python.req: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/openbabel.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/openbabel.py: line=20 IGNORE (for REQ=slight and deep=8) module=new /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/openbabel.py: line=23 IGNORE (for REQ=slight and deep=12) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/openbabel.py: line=24 IGNORE (for REQ=slight and deep=12) module=imp /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/openbabel.py: line=29 IGNORE (for REQ=slight and deep=16) module=_openbabel /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/openbabel.py: line=40 IGNORE (for REQ=slight and deep=8) module=_openbabel python.req: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py: line=27 IGNORE (for REQ=slight and deep=8) module=org /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py: line=28 IGNORE (for REQ=slight and deep=8) module=java /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py: line=32 IGNORE (for REQ=slight and deep=8) module=javax /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py: line=34 IGNORE (for REQ=slight and deep=8) module=System /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py: line=35 IGNORE (for REQ=slight and deep=8) module=clr /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py: line=39 IGNORE (for REQ=slight and deep=8) module=System /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py: line=42 IGNORE (for REQ=slight and deep=8) module=System /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py: line=48 IGNORE (for REQ=slight and deep=8) module=OpenBabel /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py: line=52 IGNORE (for REQ=slight and deep=8) module=openbabel /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py: line=55 IGNORE (for REQ=slight and deep=12) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py: line=56 IGNORE (for REQ=slight and deep=12) module=Image /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py: line=57 IGNORE (for REQ=slight and deep=12) module=ImageTk /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python2.7/site-packages/pybel.py: line=828 IGNORE (for REQ=slight and deep=8) module=doctest Provides: python2.7(_openbabel), python2.7(openbabel), python2.7(pybel) Requires: libopenbabel = 2.3.2-alt2, /usr/lib64/python2.7/site-packages, libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libgcc_s.so.1(GCC_3.0)(64bit), libgcc_s.so.1(GCC_3.4)(64bit), libm.so.6(GLIBC_2.2.5)(64bit), libopenbabel.so.4()(64bit) >= set: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, libpython2.7.so.1.0()(64bit) >= set:ohlglTJlmNhqAG834zqkWOVIt5haniswy3jZHzMSkpmiv9JXWZ5uH0RN9KPJQVZ2jLFjpl36HOyednDxG8R4pxxZbYDpmUhePfWjOenqMK2OCJms718H1pDH6Zhaj0sBK5qOxb942kS3wEWLuC33glyDuKBbIz3Zxu69gi7lUzSxWfmm1JXDuvtbmjYfg6I0fKsk1KHxLkNCMf8Rh9pnMBITME1, libstdc++.so.6(CXXABI_1.3)(64bit), libstdc++.so.6(GLIBCXX_3.4)(64bit), libstdc++.so.6(GLIBCXX_3.4.11)(64bit), libstdc++.so.6(GLIBCXX_3.4.15)(64bit), libstdc++.so.6(GLIBCXX_3.4.20)(64bit), libstdc++.so.6(GLIBCXX_3.4.21)(64bit), libstdc++.so.6(GLIBCXX_3.4.9)(64bit), python-modules, rtld(GNU_HASH), rtld(GNU_UNIQUE) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.dFIVgn Creating python-module-openbabel-debuginfo package Processing files: openbabel-debuginfo-2.3.2-alt2 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.hJxCkJ find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.NfK1e8 find-requires: running scripts (debuginfo) Requires: openbabel = 2.3.2-alt2, /usr/lib/debug/lib64/ld-linux-x86-64.so.2.debug, debug64(libc.so.6), debug64(libgcc_s.so.1), debug64(libopenbabel.so.4), debug64(libstdc++.so.6), debug64(libwx_baseu-2.8.so.0), debug64(libwx_gtk2u_adv-2.8.so.0), debug64(libwx_gtk2u_core-2.8.so.0) Processing files: libopenbabel-debuginfo-2.3.2-alt2 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.f0ktKG find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.1CmySi find-requires: running scripts (debuginfo) Provides: debug64(libinchi.so.0), debug64(libopenbabel.so.4) Requires: libopenbabel = 2.3.2-alt2, debug64(libc.so.6), debug64(libcairo.so.2), debug64(libdl.so.2), debug64(libgcc_s.so.1), debug64(libm.so.6), debug64(libstdc++.so.6), debug64(libxml2.so.2), debug64(libz.so.1) Processing files: python-module-openbabel-debuginfo-2.3.2-alt2 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Bjn8bG find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.vgJVi6 find-requires: running scripts (debuginfo) Requires: python-module-openbabel = 2.3.2-alt2, debug64(libc.so.6), debug64(libgcc_s.so.1), debug64(libm.so.6), debug64(libopenbabel.so.4), debug64(libpython2.7.so.1.0), debug64(libstdc++.so.6) Adding to openbabel a strict dependency on libopenbabel Adding to openbabel-debuginfo a strict dependency on libopenbabel-debuginfo Adding to python-module-openbabel-debuginfo a strict dependency on libopenbabel-debuginfo Removing from openbabel-debuginfo 26 sources provided by libopenbabel-debuginfo also prunning dir /usr/src/debug/openbabel-2.3.2/include/openbabel/math also prunning dir /usr/src/debug/openbabel-2.3.2/include/openbabel/stereo also prunning dir /usr/src/debug/openbabel-2.3.2/include/openbabel also prunning dir /usr/src/debug/openbabel-2.3.2/include Removing from python-module-openbabel-debuginfo 51 sources provided by libopenbabel-debuginfo also prunning dir /usr/src/debug/openbabel-2.3.2/include/openbabel/math Removing 1 extra deps from openbabel due to dependency on libopenbabel Removing 2 extra deps from libopenbabel-devel due to dependency on libopenbabel Removing 1 extra deps from python-module-openbabel due to dependency on libopenbabel Removing 1 extra deps from openbabel-debuginfo due to dependency on libopenbabel-debuginfo Removing 1 extra deps from python-module-openbabel-debuginfo due to dependency on libopenbabel-debuginfo Removing 14 extra deps from openbabel due to repentancy on libopenbabel Removing 17 extra deps from python-module-openbabel due to repentancy on libopenbabel Removing 3 extra deps from openbabel-debuginfo due to repentancy on libopenbabel-debuginfo Removing 4 extra deps from python-module-openbabel-debuginfo due to repentancy on libopenbabel-debuginfo Wrote: /usr/src/RPM/RPMS/x86_64/openbabel-2.3.2-alt2.x86_64.rpm Wrote: /usr/src/RPM/RPMS/x86_64/libopenbabel-2.3.2-alt2.x86_64.rpm Wrote: /usr/src/RPM/RPMS/x86_64/libopenbabel-devel-2.3.2-alt2.x86_64.rpm Wrote: /usr/src/RPM/RPMS/x86_64/python-module-openbabel-2.3.2-alt2.x86_64.rpm Wrote: /usr/src/RPM/RPMS/x86_64/openbabel-debuginfo-2.3.2-alt2.x86_64.rpm Wrote: /usr/src/RPM/RPMS/x86_64/libopenbabel-debuginfo-2.3.2-alt2.x86_64.rpm Wrote: /usr/src/RPM/RPMS/x86_64/python-module-openbabel-debuginfo-2.3.2-alt2.x86_64.rpm 579.00user 55.84system 8:24.27elapsed 125%CPU (0avgtext+0avgdata 1074108maxresident)k 0inputs+0outputs (0major+20686425minor)pagefaults 0swaps 589.38user 59.58system 9:06.80elapsed 118%CPU (0avgtext+0avgdata 1074108maxresident)k 880inputs+0outputs (0major+21149900minor)pagefaults 0swaps