<86>Apr 14 01:43:18 userdel[46494]: delete user 'rooter' <86>Apr 14 01:43:18 groupadd[46499]: group added to /etc/group: name=rooter, GID=633 <86>Apr 14 01:43:18 groupadd[46499]: group added to /etc/gshadow: name=rooter <86>Apr 14 01:43:18 groupadd[46499]: new group: name=rooter, GID=633 <86>Apr 14 01:43:18 useradd[46503]: new user: name=rooter, UID=633, GID=633, home=/root, shell=/bin/bash <86>Apr 14 01:43:18 userdel[46509]: delete user 'builder' <86>Apr 14 01:43:18 userdel[46509]: removed group 'builder' owned by 'builder' <86>Apr 14 01:43:18 userdel[46509]: removed shadow group 'builder' owned by 'builder' <86>Apr 14 01:43:18 groupadd[46514]: group added to /etc/group: name=builder, GID=634 <86>Apr 14 01:43:18 groupadd[46514]: group added to /etc/gshadow: name=builder <86>Apr 14 01:43:18 groupadd[46514]: new group: name=builder, GID=634 <86>Apr 14 01:43:18 useradd[46518]: new user: name=builder, UID=634, GID=634, home=/usr/src, shell=/bin/bash <13>Apr 14 01:43:21 rpmi: libibverbs-1.1.8-alt1 1423045776 installed <13>Apr 14 01:43:21 rpmi: librdmacm-1.0.19.1-alt2 1423057437 installed <13>Apr 14 01:43:21 rpmi: perl-Encode-2.83-alt1 1459157776 installed <13>Apr 14 01:43:21 rpmi: libquadmath0-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553688800 installed <13>Apr 14 01:43:21 rpmi: libgfortran3-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553688800 installed <13>Apr 14 01:43:21 rpmi: libdapl-1.2.16-alt2 1297310513 installed <13>Apr 14 01:43:21 rpmi: rpm-macros-info-install-6.0-alt3 1449879498 installed <13>Apr 14 01:43:21 rpmi: libidn2-2.0.4-alt3.M80P.1 1520307194 installed <13>Apr 14 01:43:21 rpmi: gcc-fortran-common-1.4.20-alt1 1432315196 installed <13>Apr 14 01:43:21 rpmi: ca-certificates-2016.02.25-alt1 1462368370 installed <13>Apr 14 01:43:21 rpmi: libcrypto10-1.0.2n-alt0.M80P.1 1512766129 installed <13>Apr 14 01:43:21 rpmi: libquadmath5-devel-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553688800 installed <13>Apr 14 01:43:21 rpmi: libgfortran5-devel-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553688800 installed <13>Apr 14 01:43:21 rpmi: gcc5-fortran-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553688800 installed <13>Apr 14 01:43:21 rpmi: libquadmath4.8-devel-4.8.2-alt5 1454584992 installed <13>Apr 14 01:43:21 rpmi: libgfortran4.8-devel-4.8.2-alt5 1454584992 installed <13>Apr 14 01:43:21 rpmi: perl-libintl-1.24-alt1.1 1448485129 installed <13>Apr 14 01:43:21 rpmi: tex-common-0.2-alt4 1244804096 installed <13>Apr 14 01:43:21 rpmi: texi2dvi-6.0-alt3 1449879498 installed <13>Apr 14 01:43:21 rpmi: perl-Unicode-EastAsianWidth-1.33-alt1 1383358357 installed <13>Apr 14 01:43:21 rpmi: perl-Text-Unidecode-1.27-alt1 1445859908 installed <13>Apr 14 01:43:21 rpmi: perl-Pod-Escapes-1.07-alt1 1418767892 installed <13>Apr 14 01:43:22 rpmi: perl-Pod-Simple-3.32-alt1 1447205413 installed <13>Apr 14 01:43:22 rpmi: zlib-devel-1.2.8-alt1 1371079009 installed <13>Apr 14 01:43:22 rpmi: libibcommon-1.2.0-alt2 1297310586 installed <13>Apr 14 01:43:22 rpmi: libibcommon-devel-1.2.0-alt2 1297310586 installed <13>Apr 14 01:43:22 rpmi: libibumad-1.3.6-alt2 1297311908 installed <13>Apr 14 01:43:22 rpmi: libibumad-devel-1.3.6-alt2 1297311908 installed <13>Apr 14 01:43:22 rpmi: libsz2-2.1-alt4 1300649105 installed <13>Apr 14 01:43:22 rpmi: tcsh-6.18.01-alt2 1442313244 installed <13>Apr 14 01:43:22 rpmi: rpm-macros-mpi-selector-1.0.3-alt3 1504498675 installed <13>Apr 14 01:43:22 rpmi: mpi-selector-1.0.3-alt3 1504498675 installed <13>Apr 14 01:43:22 rpmi: openmpi-1.6.4-alt2 1423058639 installed <13>Apr 14 01:43:22 rpmi: libpnetcdf-1.6.0-alt1 1426128048 installed <13>Apr 14 01:43:22 rpmi: libexpat-2.2.4-alt0.M80P.1 1503871120 installed <13>Apr 14 01:43:22 rpmi: libsysfs-2.1.0-alt8 1435686567 installed <13>Apr 14 01:43:22 rpmi: libsysfs-devel-2.1.0-alt8 1435686567 installed <13>Apr 14 01:43:22 rpmi: libibverbs-devel-1.1.8-alt1 1423045776 installed <13>Apr 14 01:43:22 rpmi: librdmacm-devel-1.0.19.1-alt2 1423057437 installed <13>Apr 14 01:43:22 rpmi: libdapl-devel-1.2.16-alt2 1297310513 installed <13>Apr 14 01:43:22 rpmi: publicsuffix-list-dafsa-20190329-alt1 p8+226349.100.1.1 1554128046 installed <13>Apr 14 01:43:22 rpmi: libpsl-0.18.0-alt0.M80P.1 1502785107 installed <13>Apr 14 01:43:22 rpmi: libnghttp2-1.8.0-alt1 1456818805 installed <13>Apr 14 01:43:22 rpmi: libverto-0.2.6-alt1_6 1455633234 installed <13>Apr 14 01:43:22 rpmi: libkeyutils-1.5.10-alt0.M80P.2 p8+216694.100.6.1 1547827915 installed <13>Apr 14 01:43:22 rpmi: libcom_err-1.42.13-alt2 1449075846 installed <13>Apr 14 01:43:22 rpmi: libbrotlicommon0-1.0.4-alt0.M80P.1 1528205024 installed <13>Apr 14 01:43:22 rpmi: libbrotlidec0-1.0.4-alt0.M80P.1 1528205024 installed <13>Apr 14 01:43:22 rpmi: libXdmcp-1.1.1-alt1 1334617699 installed <13>Apr 14 01:43:22 rpmi: libXau-1.0.8-alt1 1369565807 installed <13>Apr 14 01:43:22 rpmi: libxcb-1.12-alt2 p8.218219.300 1545313310 installed <13>Apr 14 01:43:22 rpmi: libX11-locales-3:1.6.3-alt1 1431956885 installed <13>Apr 14 01:43:22 rpmi: libX11-3:1.6.3-alt1 1431956911 installed <13>Apr 14 01:43:22 rpmi: libTraceInput-1.3.0-alt5 1340619584 installed <13>Apr 14 01:43:22 rpmi: libmpe2-1.3.0-alt5 1340619584 installed <13>Apr 14 01:43:22 rpmi: libhdf5-8-mpi-1.8.13-alt1 1401877548 installed <13>Apr 14 01:43:22 rpmi: gcc-c++-common-1.4.20-alt1 1432315196 installed <13>Apr 14 01:43:22 rpmi: libstdc++5-devel-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553688800 installed <13>Apr 14 01:43:23 rpmi: gcc5-c++-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553688800 installed <13>Apr 14 01:43:23 rpmi: openmpi-devel-1.6.4-alt2 1423058639 installed <13>Apr 14 01:43:23 rpmi: libhdf5-mpi-devel-1.8.13-alt1 1401877548 installed <13>Apr 14 01:43:23 rpmi: bc-1:1.06-alt4 1461014962 installed <13>Apr 14 01:43:23 rpmi: libexpat-devel-2.2.4-alt0.M80P.1 1503871120 installed <13>Apr 14 01:43:23 rpmi: flex-2.6.0-alt1 1449073214 installed <86>Apr 14 01:43:23 groupadd[65823]: group added to /etc/group: name=_keytab, GID=499 <86>Apr 14 01:43:23 groupadd[65823]: group added to /etc/gshadow: name=_keytab <86>Apr 14 01:43:23 groupadd[65823]: new group: name=_keytab, GID=499 <13>Apr 14 01:43:23 rpmi: libkrb5-1.14.6-alt1.M80P.1 1525355673 installed <13>Apr 14 01:43:23 rpmi: libssl10-1.0.2n-alt0.M80P.1 1512766129 installed <13>Apr 14 01:43:23 rpmi: perl-Unicode-Normalize-1:5.22.3-alt0.M80P.1 1485958065 installed <13>Apr 14 01:43:23 rpmi: makeinfo-6.0-alt3 1449879498 installed <86>Apr 14 01:43:23 groupadd[66002]: group added to /etc/group: name=sasl, GID=498 <86>Apr 14 01:43:23 groupadd[66002]: group added to /etc/gshadow: name=sasl <86>Apr 14 01:43:23 groupadd[66002]: new group: name=sasl, GID=498 <13>Apr 14 01:43:23 rpmi: libsasl2-3-2.1.26-alt7 1479477445 installed <13>Apr 14 01:43:23 rpmi: libldap-2.4.45-alt1.M80P.1 1513980376 installed <13>Apr 14 01:43:23 rpmi: libcurl-7.64.0-alt1 p8+220788.100.1.1 1549495393 installed <13>Apr 14 01:43:24 rpmi: libnetcdf7-mpi-4.3.2-alt1 1401877742 installed <13>Apr 14 01:43:24 rpmi: libcurl-devel-7.64.0-alt1 p8+220788.100.1.1 1549495393 installed <13>Apr 14 01:43:24 rpmi: perl-unicore-1:5.22.3-alt0.M80P.1 1485958186 installed <13>Apr 14 01:43:24 rpmi: texinfo-6.0-alt3 1449879485 installed <13>Apr 14 01:43:24 rpmi: libnetcdf-mpi-devel-4.3.2-alt1 1401877742 installed Installing libnetcdf_c++-4-mpi-4.2-alt3.1.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.41562 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf libnetcdf_c++-4-mpi-4.2 + echo 'Source #0 (libnetcdf_c++-4-mpi-4.2.tar):' Source #0 (libnetcdf_c++-4-mpi-4.2.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/libnetcdf_c++-4-mpi-4.2.tar + cd libnetcdf_c++-4-mpi-4.2 + /bin/chmod -c -Rf u+rwX,go-w . + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.41562 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd libnetcdf_c++-4-mpi-4.2 + mpi-selector --set openmpi + source /usr/lib64/openmpi/bin/mpivars.sh ++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ grep -q /usr/lib64/openmpi/bin ++ PATH=/usr/lib64/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ export PATH ++ echo ++ grep -q /usr/lib64/openmpi/lib ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ echo ++ grep -q /usr/lib64/openmpi/man ++ MANPATH=/usr/lib64/openmpi/man: ++ export MANPATH + export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + autoreconf -fisv autoreconf-default: Entering directory `.' autoreconf-default: configure.ac: not using Gettext autoreconf-default: running: aclocal --force -I m4 configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5428: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:816: _LT_LANG is expanded from... m4/libtool.m4:799: LT_LANG is expanded from... m4/libtool.m4:827: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5428: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:816: _LT_LANG is expanded from... m4/libtool.m4:799: LT_LANG is expanded from... m4/libtool.m4:827: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level autoreconf-default: configure.ac: tracing configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5428: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:816: _LT_LANG is expanded from... m4/libtool.m4:799: LT_LANG is expanded from... m4/libtool.m4:827: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level autoreconf-default: running: libtoolize --force --install libtoolize-default: putting auxiliary files in `.'. libtoolize-default: linking file `./config.guess' libtoolize-default: linking file `./config.sub' libtoolize-default: linking file `./install-sh' libtoolize-default: linking file `./ltmain.sh' libtoolize-default: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize-default: linking file `m4/libtool.m4' libtoolize-default: linking file `m4/ltoptions.m4' libtoolize-default: linking file `m4/ltsugar.m4' libtoolize-default: linking file `m4/ltversion.m4' libtoolize-default: linking file `m4/lt~obsolete.m4' autoreconf-default: configure.ac: not using Intltool autoreconf-default: configure.ac: not using gtk-doc autoreconf-default: running: /usr/bin/autoconf-2.60 --force autoreconf-default: running: /usr/bin/autoheader-2.60 --force autoreconf-default: running: automake --add-missing --force-missing configure.ac:33: warning: support for distribution archives compressed with legacy program 'compress' is deprecated. configure.ac:33: It will be removed in Automake 2.0 configure.ac:95: installing './compile' parallel-tests: installing './test-driver' autoreconf-default: Leaving directory `.' + CFLAGS='-pipe -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export CFLAGS + CXXFLAGS='-pipe -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export CXXFLAGS + FFLAGS='-pipe -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export FFLAGS + '[' -n '' ']' ++ printf %s '-pipe -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' ++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g' + ASFLAGS= + export ASFLAGS + export lt_cv_deplibs_check_method=pass_all + lt_cv_deplibs_check_method=pass_all + xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n' + readlink -e -- ./configure + sort -u + xargs -ri dirname -- '{}' + xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess + ./configure --build=x86_64-alt-linux --host=x86_64-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --without-included-gettext --enable-shared --enable-static=no --bindir=/usr/lib64/openmpi/bin --libdir=/usr/lib64/openmpi/lib --includedir=/usr/lib64/openmpi/include configure: WARNING: unrecognized options: --without-included-gettext configure: netCDF-cxx 4.2 checking build system type... x86_64-alt-linux-gnu checking host system type... x86_64-alt-linux-gnu checking target system type... x86_64-alt-linux-gnu checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes configure: checking user options checking whether extra valgrind tests should be run... no checking whether netCDF extra tests should be run (developers only)... no checking whether large file (> 2GB) tests should be run... no checking where to put large temp files if large file tests are run... . configure: finding C++ compiler (will not be used if C++ API is not desired) checking for x86_64-alt-linux-g++... x86_64-alt-linux-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether x86_64-alt-linux-g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of x86_64-alt-linux-g++... none configure: setting up libtool checking how to print strings... printf checking for x86_64-alt-linux-gcc... x86_64-alt-linux-gcc checking whether we are using the GNU C compiler... yes checking whether x86_64-alt-linux-gcc accepts -g... yes checking for x86_64-alt-linux-gcc option to accept ISO C89... none needed checking whether x86_64-alt-linux-gcc understands -c and -o together... yes checking dependency style of x86_64-alt-linux-gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by x86_64-alt-linux-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-alt-linux-gnu file names to x86_64-alt-linux-gnu format... func_convert_file_noop checking how to convert x86_64-alt-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-alt-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... (cached) pass_all checking for x86_64-alt-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-alt-linux-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for x86_64-alt-linux-strip... no checking for strip... strip checking for x86_64-alt-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from x86_64-alt-linux-gcc object... ok checking for sysroot... no checking for x86_64-alt-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... x86_64-alt-linux-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-alt-linux-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-alt-linux-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-alt-linux-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-alt-linux-gcc static flag -static works... no checking if x86_64-alt-linux-gcc supports -c -o file.o... yes checking if x86_64-alt-linux-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-alt-linux-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... x86_64-alt-linux-g++ -E checking for ld used by x86_64-alt-linux-g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-alt-linux-g++ option to produce PIC... -fPIC -DPIC checking if x86_64-alt-linux-g++ PIC flag -fPIC -DPIC works... yes checking if x86_64-alt-linux-g++ static flag -static works... no checking if x86_64-alt-linux-g++ supports -c -o file.o... yes checking if x86_64-alt-linux-g++ supports -c -o file.o... (cached) yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: finding other utilities checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking netcdf.h usability... yes checking netcdf.h presence... no configure: WARNING: netcdf.h: accepted by the compiler, rejected by the preprocessor! configure: WARNING: netcdf.h: proceeding with the compiler's result checking for netcdf.h... yes checking for library containing nc_open... -lnetcdf checking for nc_def_opaque... yes checking for nccreate... yes checking for nc_set_log_level... no checking for nc_use_parallel_enabled... yes configure: generating header files and makefiles checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating man4/Makefile config.status: creating cxx/Makefile config.status: creating examples/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --without-included-gettext + '[' -n '' ']' + NPROCS=8 + make -j8 make: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make all-recursive make[1]: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' Making all in cxx make[2]: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' /bin/sh ../libtool --tag=CXX --mode=compile x86_64-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o libnetcdf_c___la-netcdf.lo `test -f 'netcdf.cpp' || echo './'`netcdf.cpp /bin/sh ../libtool --tag=CXX --mode=compile x86_64-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o libnetcdf_c___la-ncvalues.lo `test -f 'ncvalues.cpp' || echo './'`ncvalues.cpp libtool: compile: x86_64-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c netcdf.cpp -fPIC -DPIC -o .libs/libnetcdf_c___la-netcdf.o libtool: compile: x86_64-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c ncvalues.cpp -fPIC -DPIC -o .libs/libnetcdf_c___la-ncvalues.o netcdf.cpp: In member function 'int NcVar::num_atts() const': netcdf.cpp:650:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] if (the_file->is_valid()) ^ /bin/sh ../libtool --tag=CXX --mode=link x86_64-alt-linux-g++ -pipe -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -version-number 4:2:0 -o libnetcdf_c++.la -rpath /usr/lib64/openmpi/lib libnetcdf_c___la-netcdf.lo libnetcdf_c___la-ncvalues.lo -lnetcdf libtool: link: x86_64-alt-linux-g++ -fPIC -DPIC -shared -nostdlib /usr/lib64/gcc/x86_64-alt-linux/5/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-alt-linux/5/crtbeginS.o .libs/libnetcdf_c___la-netcdf.o .libs/libnetcdf_c___la-ncvalues.o -lnetcdf -L/usr/lib64/gcc/x86_64-alt-linux/5 -L/usr/lib64/gcc/x86_64-alt-linux/5/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/5/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib64/gcc/x86_64-alt-linux/5/crtendS.o /usr/lib64/gcc/x86_64-alt-linux/5/../../../../lib64/crtn.o -O2 -Wl,-soname -Wl,libnetcdf_c++.so.4 -o .libs/libnetcdf_c++.so.4.2.0 libtool: link: (cd ".libs" && rm -f "libnetcdf_c++.so.4" && ln -s "libnetcdf_c++.so.4.2.0" "libnetcdf_c++.so.4") libtool: link: (cd ".libs" && rm -f "libnetcdf_c++.so" && ln -s "libnetcdf_c++.so.4.2.0" "libnetcdf_c++.so") libtool: link: ( cd ".libs" && rm -f "libnetcdf_c++.la" && ln -s "../libnetcdf_c++.la" "libnetcdf_c++.la" ) make[2]: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' Making all in examples make[2]: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' Making all in man4 make[2]: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' Updating ./version-cxx.texi make[2]: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' make[2]: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[2]: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[1]: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.52228 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot + : + /bin/rm -rf -- /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot + cd libnetcdf_c++-4-mpi-4.2 + source /usr/lib64/openmpi/bin/mpivars.sh ++ grep -q /usr/lib64/openmpi/bin ++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ PATH=/usr/lib64/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ export PATH ++ echo ++ grep -q /usr/lib64/openmpi/lib ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ echo ++ grep -q /usr/lib64/openmpi/man ++ MANPATH=/usr/lib64/openmpi/man: ++ export MANPATH + export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + make 'INSTALL=/bin/install -p' install DESTDIR=/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot make: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' Making install in cxx make[1]: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' make[2]: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' /bin/mkdir -p '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib' /bin/sh ../libtool --mode=install /bin/install -p libnetcdf_c++.la '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib' libtool: install: /bin/install -p .libs/libnetcdf_c++.so.4.2.0 /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib/libnetcdf_c++.so.4.2.0 libtool: install: (cd /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib && { ln -s -f libnetcdf_c++.so.4.2.0 libnetcdf_c++.so.4 || { rm -f libnetcdf_c++.so.4 && ln -s libnetcdf_c++.so.4.2.0 libnetcdf_c++.so.4; }; }) libtool: install: (cd /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib && { ln -s -f libnetcdf_c++.so.4.2.0 libnetcdf_c++.so || { rm -f libnetcdf_c++.so && ln -s libnetcdf_c++.so.4.2.0 libnetcdf_c++.so; }; }) libtool: install: /bin/install -p .libs/libnetcdf_c++.lai /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib/libnetcdf_c++.la libtool: install: warning: remember to run `libtool --finish /usr/lib64/openmpi/lib' /bin/mkdir -p '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include' /bin/install -p -m 644 netcdfcpp.h ncvalues.h netcdf.hh '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include' make[2]: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' make[1]: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' Making install in examples make[1]: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' make[2]: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' make[1]: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' Making install in man4 make[1]: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (/bin/sh /usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/missing makeinfo --version) >/dev/null 2>&1; then \ for f in netcdf-cxx.info netcdf-cxx.info-[0-9] netcdf-cxx.info-[0-9][0-9] netcdf-cxx.i[0-9] netcdf-cxx.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if /bin/sh /usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/missing makeinfo -I . \ -o netcdf-cxx.info netcdf-cxx.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./netcdf-cxx.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc ./defines.texi:86: warning: multiple @setchapternewpage make[2]: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' make[2]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/info' /bin/install -p -m 644 ./netcdf-cxx.info '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/info' make[2]: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' make[1]: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' make[1]: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[2]: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[2]: Nothing to be done for `install-exec-am'. make install-data-hook make[3]: Entering directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' +-------------------------------------------------------------+ | Congratulations! You have successfully installed the netCDF | | C++ Libaray | | | | CAUTION: | | | | If you have not already run "make check", then we strongly | | recommend you do so. It does not take very long. | | | | Before using netCDF to store important data, test your | | build with "make check". | | | | NetCDF is tested nightly on many platforms at Unidata | | but your platform is probably different in some ways. | | | | If any tests fail, please see the netCDF web site: | | http://www.unidata.ucar.edu/software/netcdf/ | | | | NetCDF is developed and maintained at the Unidata Program | | Center. Unidata provides a broad array of data and software | | tools for use in geoscience education and research. | | http://www.unidata.ucar.edu | +-------------------------------------------------------------+ make[3]: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[2]: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[1]: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make: Leaving directory `/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' + install -d /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf + mv /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/ncvalues.h /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf.hh /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdfcpp.h /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf/ + rm -f /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib/libnetcdf_c++.la + install -d /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/etc/alternatives/packages.d + mkdir -p /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64 + pushd /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib ~/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib ~/RPM/BUILD/libnetcdf_c++-4-mpi-4.2 + for i in 'libnetcdf_c++.so.*' + ln -s ../../usr/lib64/openmpi/lib/libnetcdf_c++.so.4 /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/ + echo '/usr/lib64/libnetcdf_c++.so.4 /usr/lib64/openmpi/lib/libnetcdf_c++.so.4 30' + for i in 'libnetcdf_c++.so.*' + ln -s ../../usr/lib64/openmpi/lib/libnetcdf_c++.so.4.2.0 /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/ + echo '/usr/lib64/libnetcdf_c++.so.4.2.0 /usr/lib64/openmpi/lib/libnetcdf_c++.so.4.2.0 30' ++ ls libnetcdf_c++.so + for i in '$(ls *.so)' + echo '/usr/lib64/libnetcdf_c++.so /usr/lib64/openmpi/lib/libnetcdf_c++.so 30' + popd ~/RPM/BUILD/libnetcdf_c++-4-mpi-4.2 + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (auto) mode of './usr/lib64/openmpi/lib/libnetcdf_c++.so.4.2.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) Verifying and fixing files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (binconfig,pkgconfig,libtool,desktop) Compressing files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (auto) Verifying info files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/info (normal) Adjusting library links in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot ./usr/lib64: ./usr/lib64/openmpi/lib: libnetcdf_c++.so.4 -> libnetcdf_c++.so.4.2.0 Verifying ELF objects in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) Hardlinking identical .pyc and .pyo files Processing files: libnetcdf_c++-4-mpi-4.2-alt3.1 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.63709 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd libnetcdf_c++-4-mpi-4.2 + DOCDIR=/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + export DOCDIR + rm -rf /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + /bin/mkdir -p /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + cp -prL COPYRIGHT /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + chmod -R go-w /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + chmod -R a+rX /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.ihwMlQ find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) lib.prov: /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/libnetcdf_c++.so.4: 468 symbols, 19 bpp warning: hash collision: _ZN13NcValues_longC1ERKS_ _ZN5NcVar3putEPKllllll warning: hash collision: _ZN13NcValues_longC1ElPKl _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.XciGzs find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) ++ /bin/sed -e '/^debug.*(libnetcdf\.so.*/s/^/libnetcdf7-mpi-debuginfo\t/' Provides: libnetcdf_c++-mpi = 4.2-alt3.1, libnetcdf_c++-4-mpi = 4.2-alt3.1, /usr/lib64/libnetcdf_c++.so.4 = 30, /usr/lib64/libnetcdf_c++.so.4.2.0 = 30, libnetcdf_c++.so.4()(64bit) = set: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 Requires: libhdf5-8-mpi, libnetcdf7-mpi, /etc/alternatives/packages.d, libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.4)(64bit), libgcc_s.so.1(GCC_3.0)(64bit), libnetcdf.so.7()(64bit) >= set:oitpZH0nFmdtO6DUe5cR2i5WHqrmak4Z29VKNABIkQOKpVZ2GUvgXAeJRbmn4GGhQZ6dr3o2FldfilfTZk3kiqAQIID0L6bECbWHsxaIUaOMkSb11wtwDYWwrZFARMrxUX4cC5sBEZhQ5qkCuct8N00ZcHcjYHDAeJpg7GSTiC2, libstdc++.so.6(CXXABI_1.3)(64bit), libstdc++.so.6(GLIBCXX_3.4)(64bit), libstdc++.so.6(GLIBCXX_3.4.11)(64bit), libstdc++.so.6(GLIBCXX_3.4.21)(64bit), libstdc++.so.6(GLIBCXX_3.4.9)(64bit), rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Requires(post): alternatives Requires(preun): alternatives Conflicts: libnetcdf_c++ < 4.0.1-alt6, libnetcdf_c++-4-mpi < 4.2-alt3.1 Obsoletes: libnetcdf_c++-4-mpi < 4.2-alt3.1 Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.8KNyTc Creating libnetcdf_c++-4-mpi-debuginfo package Processing files: libnetcdf_c++-mpi-devel-4.2-alt3.1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.pIet0Z find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.ah56XP find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) In file included from /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf/netcdfcpp.h:13:0, from /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf/netcdf.hh:1: /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf/ncvalues.h:13:20: fatal error: iostream: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf/netcdf.hh: cpp failed, trying c++ mode ++ /bin/sed -e '/^debug.*(libnetcdf\.so.*/s/^/libnetcdf7-mpi-debuginfo\t/' Provides: /usr/lib64/libnetcdf_c++.so = 30 Requires: libnetcdf_c++-4-mpi = 4.2-alt3.1, libnetcdf-mpi-devel, /etc/alternatives/packages.d, /usr/lib64/openmpi/lib/libnetcdf_c++.so.4.2.0 Requires(post): alternatives Requires(preun): alternatives Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.FhszRI Processing files: libnetcdf_c++-4-mpi-doc-4.2-alt3.1 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.28366 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd libnetcdf_c++-4-mpi-4.2 + DOCDIR=/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + export DOCDIR + rm -rf /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + /bin/mkdir -p /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + cp -prL man4/netcdf-cxx.html man4/netcdf-cxx.pdf examples /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + chmod -R go-w /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + chmod -R a+rX /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.21indF find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.FErbxE find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) Conflicts: libnetcdf_c++-4-seq-doc Processing files: libnetcdf_c++-4-mpi-debuginfo-4.2-alt3.1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Q42pNG find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.hDsMPL find-requires: running scripts (debuginfo) ++ /bin/sed -e '/^debug.*(libnetcdf\.so.*/s/^/libnetcdf7-mpi-debuginfo\t/' --- find-requires-deps 2019-04-14 01:43:56.626045266 +0000 +++ filter-requires-deps 2019-04-14 01:43:56.627045275 +0000 @@ -2,3 +2,3 @@ debug64(libgcc_s.so.1) -debug64(libnetcdf.so.7) +libnetcdf7-mpi-debuginfo debug64(libnetcdf.so.7) debug64(libstdc++.so.6) Provides: debug64(libnetcdf_c++.so.4) Requires: libnetcdf_c++-4-mpi = 4.2-alt3.1, debug64(libc.so.6), debug64(libgcc_s.so.1), libnetcdf7-mpi-debuginfo, debug64(libnetcdf.so.7), debug64(libstdc++.so.6) Removing 1 extra deps from libnetcdf_c++-mpi-devel due to dependency on libnetcdf_c++-4-mpi Removing 2 extra deps from libnetcdf_c++-mpi-devel due to repentancy on libnetcdf_c++-4-mpi Wrote: /usr/src/RPM/RPMS/x86_64/libnetcdf_c++-4-mpi-4.2-alt3.1.x86_64.rpm Wrote: /usr/src/RPM/RPMS/x86_64/libnetcdf_c++-mpi-devel-4.2-alt3.1.x86_64.rpm Wrote: /usr/src/RPM/RPMS/noarch/libnetcdf_c++-4-mpi-doc-4.2-alt3.1.noarch.rpm Wrote: /usr/src/RPM/RPMS/x86_64/libnetcdf_c++-4-mpi-debuginfo-4.2-alt3.1.x86_64.rpm 12.64user 2.77system 0:31.15elapsed 49%CPU (0avgtext+0avgdata 68396maxresident)k 0inputs+0outputs (0major+1105279minor)pagefaults 0swaps 19.34user 5.24system 0:41.61elapsed 59%CPU (0avgtext+0avgdata 122080maxresident)k 0inputs+0outputs (0major+1520589minor)pagefaults 0swaps