<86>Apr 21 03:20:22 userdel[14654]: delete user 'rooter' <86>Apr 21 03:20:22 userdel[14654]: removed group 'rooter' owned by 'rooter' <86>Apr 21 03:20:22 userdel[14654]: removed shadow group 'rooter' owned by 'rooter' <86>Apr 21 03:20:22 groupadd[14679]: group added to /etc/group: name=rooter, GID=639 <86>Apr 21 03:20:22 groupadd[14679]: group added to /etc/gshadow: name=rooter <86>Apr 21 03:20:22 groupadd[14679]: new group: name=rooter, GID=639 <86>Apr 21 03:20:22 useradd[14697]: new user: name=rooter, UID=639, GID=639, home=/root, shell=/bin/bash <86>Apr 21 03:20:22 userdel[14721]: delete user 'builder' <86>Apr 21 03:20:22 userdel[14721]: removed group 'builder' owned by 'builder' <86>Apr 21 03:20:22 groupadd[14756]: group added to /etc/group: name=builder, GID=640 <86>Apr 21 03:20:22 groupadd[14756]: group added to /etc/gshadow: name=builder <86>Apr 21 03:20:22 groupadd[14756]: new group: name=builder, GID=640 <86>Apr 21 03:20:22 useradd[14769]: new user: name=builder, UID=640, GID=640, home=/usr/src, shell=/bin/bash <13>Apr 21 03:20:28 rpmi: tex-common-0.2-alt4 1244804096 installed <13>Apr 21 03:20:28 rpmi: texlive-common-0.1-alt3 1244804816 installed <13>Apr 21 03:20:28 rpmi: libjpeg-2:1.3.1-alt0.1 1388074033 installed <13>Apr 21 03:20:28 rpmi: libpng15-1.5.28-alt1 1484572014 installed <13>Apr 21 03:20:28 rpmi: libtiff5-4.0.3-alt1 1348347498 installed <13>Apr 21 03:20:28 rpmi: perl-Encode-2.83-alt1 1459157776 installed <13>Apr 21 03:20:28 rpmi: libnspr-1:4.20-alt1 p8.216526.40 1542382588 installed <13>Apr 21 03:20:28 rpmi: libpng12-1.2.50-alt2 1347753407 installed <13>Apr 21 03:20:28 rpmi: liblcms2-2.8-alt1 1471601528 installed <13>Apr 21 03:20:28 rpmi: libexpat-2.2.4-alt0.M80P.1 1503871120 installed <13>Apr 21 03:20:28 rpmi: perl-Term-ANSIColor-4.05-alt1 1458575791 installed <13>Apr 21 03:20:28 rpmi: libidn2-2.0.4-alt3.M80P.1 1520307194 installed <13>Apr 21 03:20:28 rpmi: libICE-1.0.9-alt1 1409902719 installed <13>Apr 21 03:20:28 rpmi: libwayland-server-1.14.0-alt0.M80P.1 1502720500 installed <13>Apr 21 03:20:28 rpmi: libgdbm-1.8.3-alt10 1454943313 installed <13>Apr 21 03:20:28 rpmi: libkpathsea-2008.0-alt0.15.6 1449446882 installed <13>Apr 21 03:20:28 rpmi: libopenjpeg2.0-2.2.0-alt0.M80P.1 1503526491 installed <13>Apr 21 03:20:28 rpmi: ca-certificates-2016.02.25-alt1 1462368370 installed <13>Apr 21 03:20:28 rpmi: libcrypto10-1.0.2n-alt0.M80P.1 1512766129 installed <13>Apr 21 03:20:28 rpmi: perl-DBM-1:5.22.3-alt0.M80P.1 1485958065 installed <13>Apr 21 03:20:28 rpmi: libSM-1.2.2-alt1 1391072686 installed <13>Apr 21 03:20:28 rpmi: libjasper-1.900.1-alt3 1391718482 installed <13>Apr 21 03:20:29 rpmi: fonts-type1-tipa-tex-1.3-alt4 1246545601 installed <13>Apr 21 03:20:29 rpmi: texlive-doc-base-2008.0-alt0.10 1238420746 installed <13>Apr 21 03:20:29 rpmi: texmf-tex4ht-1.0.2009_06_11_1038-alt1 1328304130 installed <13>Apr 21 03:20:29 rpmi: tcsh-6.18.01-alt2 1442313244 installed <13>Apr 21 03:20:29 rpmi: t1lib-5.1.2-alt5 1326979643 installed <13>Apr 21 03:20:29 rpmi: perl-Term-Cap-1.17-alt1 1445018869 installed <13>Apr 21 03:20:29 rpmi: perl-Pod-Escapes-1.07-alt1 1418767892 installed <13>Apr 21 03:20:29 rpmi: perl-Pod-Simple-3.32-alt1 1447205413 installed <13>Apr 21 03:20:29 rpmi: libruby-2.5.1-alt0.M80P.1 1525659669 installed <13>Apr 21 03:20:29 rpmi: ruby-2.5.1-alt0.M80P.1 1525659669 installed <13>Apr 21 03:20:29 rpmi: poppler-data-0.4.8-alt1.M80P.1 1524561858 installed <13>Apr 21 03:20:29 rpmi: publicsuffix-list-dafsa-20190329-alt1 p8+226349.100.1.1 1554128046 installed <13>Apr 21 03:20:29 rpmi: libpsl-0.18.0-alt0.M80P.1 1502785107 installed <13>Apr 21 03:20:29 rpmi: libnghttp2-1.8.0-alt1 1456818805 installed <13>Apr 21 03:20:29 rpmi: libpixman-3:0.32.8-alt1 1447610691 installed <13>Apr 21 03:20:29 rpmi: libbrotlicommon0-1.0.4-alt0.M80P.1 1528205024 installed <13>Apr 21 03:20:29 rpmi: libbrotlidec0-1.0.4-alt0.M80P.1 1528205024 installed <13>Apr 21 03:20:29 rpmi: libwayland-client-1.14.0-alt0.M80P.1 1502720500 installed <13>Apr 21 03:20:29 rpmi: libxshmfence-1.2-alt1 1420972191 installed <13>Apr 21 03:20:29 rpmi: libpciaccess-1:0.13.4-alt1 1431681688 installed <13>Apr 21 03:20:29 rpmi: libdrm-1:2.4.89-alt1.M80P.1 1516609380 installed <13>Apr 21 03:20:29 rpmi: libgbm-4:18.0.5-alt1.M80P.1 p8+226404.100.1.1 1554206332 installed <13>Apr 21 03:20:29 rpmi: libX11-locales-3:1.6.3-alt1 1431956885 installed <13>Apr 21 03:20:29 rpmi: libXdmcp-1.1.1-alt1 1334617699 installed <13>Apr 21 03:20:30 rpmi: libXau-1.0.8-alt1 1369565807 installed <13>Apr 21 03:20:30 rpmi: libxcb-1.12-alt2 p8.218219.300 1545313310 installed <13>Apr 21 03:20:30 rpmi: libX11-3:1.6.3-alt1 1431956911 installed <13>Apr 21 03:20:30 rpmi: libXext-1.3.3-alt1 1409902932 installed <13>Apr 21 03:20:30 rpmi: libXt-1.1.4-alt1 1369984716 installed <13>Apr 21 03:20:30 rpmi: libXmu-1.1.2-alt1 1391072528 installed <13>Apr 21 03:20:30 rpmi: libXpm-3.5.11-alt1 1391072398 installed <13>Apr 21 03:20:30 rpmi: libXrender-0.9.8-alt1 1371312110 installed <13>Apr 21 03:20:30 rpmi: libXaw-1.0.12-alt1 1391072621 installed <13>Apr 21 03:20:30 rpmi: libXxf86vm-1.1.3-alt1 1369984824 installed <13>Apr 21 03:20:30 rpmi: libXdamage-1.1.3-alt4 1297162596 installed <13>Apr 21 03:20:30 rpmi: libXfixes-5.0.1-alt1 1369809606 installed <13>Apr 21 03:20:30 rpmi: libGL-4:18.0.5-alt1.M80P.1 p8+226404.100.1.1 1554206332 installed <13>Apr 21 03:20:30 rpmi: libEGL-4:18.0.5-alt1.M80P.1 p8+226404.100.1.1 1554206332 installed <13>Apr 21 03:20:30 rpmi: mailx-8.1.2-alt7 1366314831 installed <13>Apr 21 03:20:30 rpmi: sharutils-4.6.3-alt1.1.qa2.1 1449219807 installed <13>Apr 21 03:20:30 rpmi: libsqlite3-3.15.2-alt1 1480432212 installed <13>Apr 21 03:20:30 rpmi: libnss-3.40.0-alt0.M80P.1 p8.216526.44 1542814585 installed <13>Apr 21 03:20:30 rpmi: nss-utils-3.40.0-alt0.M80P.1 p8.216526.44 1542814585 installed <13>Apr 21 03:20:30 rpmi: ncompress-4.2.4.4-alt1 1366160439 installed <13>Apr 21 03:20:30 rpmi: libjbig-2.1-alt1 1401380921 installed <13>Apr 21 03:20:30 rpmi: xorg-rgb-1.0.4-alt1.qa1 1366268675 installed <13>Apr 21 03:20:30 rpmi: libnetpbm-10.35.97-alt1 1447854203 installed <13>Apr 21 03:20:30 rpmi: netpbm-10.35.97-alt1 1447854203 installed <13>Apr 21 03:20:30 rpmi: libpaper-1.1.24-alt4 1315383473 installed <13>Apr 21 03:20:30 rpmi: libverto-0.2.6-alt1_6 1455633234 installed <13>Apr 21 03:20:30 rpmi: libkeyutils-1.5.10-alt0.M80P.2 p8+216694.100.6.1 1547827915 installed <13>Apr 21 03:20:30 rpmi: libcom_err-1.42.13-alt2 1449075846 installed <13>Apr 21 03:20:30 rpmi: liblz4-1:1.7.5-alt1 1488766699 installed <13>Apr 21 03:20:30 rpmi: libgpg-error-1.31-alt1.M80P.1 1529024730 installed <13>Apr 21 03:20:31 rpmi: libgcrypt20-1.8.3-alt4 p8+219793.200.6.1 1551112986 installed <13>Apr 21 03:20:31 rpmi: libsystemd-1:239-alt1.M80P.1 p8+226956.200.2.1 1555431492 installed <13>Apr 21 03:20:31 rpmi: libdbus-1.10.24-alt4.M80P.1 1518773282 installed <13>Apr 21 03:20:31 rpmi: libavahi-0.6.31-alt7.M80P.1 1526318593 installed <13>Apr 21 03:20:31 rpmi: libgraphite2-1.3.10-alt0.M80P.1 1496411360 installed <13>Apr 21 03:20:32 rpmi: texlive-base-bin-2008.0-alt0.15.6 1449446882 installed <13>Apr 21 03:20:33 rpmi: texlive-base-2008.0-alt0.15 1300007455 installed <13>Apr 21 03:20:35 rpmi: texlive-latex-base-2008.0-alt0.15 1300007455 installed <13>Apr 21 03:20:35 rpmi: texlive-font-utils-2008.0-alt0.15.6 1449446882 installed <86>Apr 21 03:20:35 groupadd[37351]: group added to /etc/group: name=_keytab, GID=499 <86>Apr 21 03:20:35 groupadd[37351]: new group: name=_keytab, GID=499 <13>Apr 21 03:20:35 rpmi: libkrb5-1.14.6-alt1.M80P.1 1525355673 installed <13>Apr 21 03:20:35 rpmi: libssl10-1.0.2n-alt0.M80P.1 1512766129 installed <13>Apr 21 03:20:35 rpmi: perl-Pod-Usage-1.68-alt1 1451923699 installed <13>Apr 21 03:20:35 rpmi: libcups-2.1.0-alt2.M80P.4 p8+223280.100.1.1 1551372192 installed <86>Apr 21 03:20:35 groupadd[37800]: group added to /etc/group: name=sasl, GID=498 <86>Apr 21 03:20:35 groupadd[37800]: new group: name=sasl, GID=498 <13>Apr 21 03:20:35 rpmi: libsasl2-3-2.1.26-alt7 1479477445 installed <13>Apr 21 03:20:35 rpmi: libldap-2.4.45-alt1.M80P.1 1513980376 installed <13>Apr 21 03:20:35 rpmi: libcurl-7.64.0-alt1 p8+220788.100.1.1 1549495393 installed <13>Apr 21 03:20:36 rpmi: texlive-latex3-2008.0-alt0.16 1300008623 installed <13>Apr 21 03:20:36 rpmi: texlive-lang-tibetan-2008.0-alt0.14 1248958512 installed <13>Apr 21 03:20:36 rpmi: texlive-lang-polish-2008.0-alt0.14 1248958512 installed <13>Apr 21 03:20:36 rpmi: texmf-latex-tipa-1.3-alt4 1246545601 installed <13>Apr 21 03:20:36 rpmi: texlive-generic-extra-2008.0-alt0.16 1300008623 installed <13>Apr 21 03:20:36 rpmi: perl-podlators-4.07-alt1 1458574366 installed <13>Apr 21 03:20:36 rpmi: libharfbuzz-1.6.3-alt0.M80P.1 1509918814 installed <13>Apr 21 03:20:36 rpmi: libfreetype-2.8-alt0.M80P.3 1505462817 installed <13>Apr 21 03:20:36 rpmi: fontconfig-2.12.6-alt1.M80P.1 1506008910 installed Updating fonts cache: <29>Apr 21 03:20:37 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Apr 21 03:20:38 rpmi: fonts-type1-urw-3:1.0.7pre44-alt3 p8+224868.100.1.1 1552412385 installed <13>Apr 21 03:20:38 rpmi: libgs-9.20-alt1.M80P.1 1494700569 installed <13>Apr 21 03:20:38 rpmi: libXft-2.3.2-alt1 1409902650 installed <13>Apr 21 03:20:38 rpmi: perl-Tk-804.033-alt1.1 1448484960 installed <13>Apr 21 03:20:38 rpmi: libcairo-1:1.14.4-alt1 1447005495 installed <13>Apr 21 03:20:38 rpmi: libpoppler72-0.61.1-alt1.M80P.1 1524829028 installed <13>Apr 21 03:20:38 rpmi: poppler-0.61.1-alt1.M80P.1 1524829028 installed <13>Apr 21 03:20:38 rpmi: python-modules-encodings-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 21 03:20:39 rpmi: ghostscript-common-9.20-alt1.M80P.1 1494700614 installed <13>Apr 21 03:20:39 rpmi: ghostscript-classic-9.20-alt1.M80P.1 1494700569 installed <13>Apr 21 03:20:39 rpmi: latex2html-2012-alt1 1450368036 installed <13>Apr 21 03:20:39 rpmi: ghostscript-utils-9.20-alt1.M80P.1 1494700614 installed <13>Apr 21 03:20:39 rpmi: python-modules-compiler-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 21 03:20:39 rpmi: python-modules-email-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 21 03:20:39 rpmi: python-modules-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 21 03:20:39 rpmi: python-modules-unittest-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 21 03:20:42 rpmi: texlive-fonts-recommended-2008.0-alt0.15 1300007455 installed <13>Apr 21 03:20:51 rpmi: texlive-latex-recommended-2008.0-alt0.15 1300007455 installed <13>Apr 21 03:20:51 rpmi: texlive-generic-recommended-2008.0-alt0.15 1300007455 installed <13>Apr 21 03:20:52 rpmi: texlive-math-extra-2008.0-alt0.16 1300008623 installed <13>Apr 21 03:20:52 rpmi: texlive-lang-french-2008.0-alt0.14 1248958512 installed <13>Apr 21 03:20:52 rpmi: texlive-extra-utils-2008.0-alt0.15.6 1449446882 installed <13>Apr 21 03:20:52 rpmi: texlive-lang-german-2008.0-alt0.14 1248958512 installed <13>Apr 21 03:20:53 rpmi: texlive-lang-cyrillic-2008.0-alt0.14 1248958512 installed <13>Apr 21 03:20:53 rpmi: texmf-latex-xcolor-2.06-alt3 1244802289 installed <13>Apr 21 03:20:53 rpmi: texmf-pgf-3.0.1-alt1 1439012888 installed <13>Apr 21 03:21:00 rpmi: texlive-fonts-extra-2008.0-alt0.16 1300008623 installed <13>Apr 21 03:21:09 rpmi: texlive-pstricks-2008.0-alt0.16 1300008623 installed <13>Apr 21 03:21:09 rpmi: texlive-games-2008.0-alt0.16 1300008623 installed <13>Apr 21 03:21:09 rpmi: texmf-latex-obsolete-0.1-alt1 1244748792 installed <13>Apr 21 03:21:10 rpmi: texlive-lang-arab-2008.0-alt0.14 1248958512 installed <13>Apr 21 03:21:10 rpmi: texlive-xetex-2008.0-alt0.15.6 1449446882 installed <13>Apr 21 03:21:10 rpmi: texmf-latex-beamer-3.36-alt4 1451249538 installed <13>Apr 21 03:21:12 rpmi: texlive-publishers-2008.0-alt0.16 1300008623 installed <13>Apr 21 03:21:13 rpmi: texlive-pictures-2008.0-alt0.15 1300007455 installed <13>Apr 21 03:21:14 rpmi: texlive-science-2008.0-alt0.16 1300008623 installed <13>Apr 21 03:21:14 rpmi: texlive-humanities-2008.0-alt0.16 1300008623 installed <13>Apr 21 03:21:21 rpmi: texlive-latex-extra-2008.0-alt0.16 1300008623 installed <13>Apr 21 03:21:22 rpmi: texlive-bibtex-extra-2008.0-alt0.16 1300008623 installed Installing fenics-book-20130430-alt1.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.30861 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf fenics-book-20130430 + echo 'Source #0 (fenics-book-20130430.tar.gz):' Source #0 (fenics-book-20130430.tar.gz): + /bin/gzip -dc /usr/src/RPM/SOURCES/fenics-book-20130430.tar.gz + /bin/tar -xf - + cd fenics-book-20130430 + /bin/chmod -c -Rf u+rwX,go-w . + install -p -m644 /usr/src/RPM/SOURCES/emptypage.sty /usr/src/RPM/SOURCES/todonotes.sty packages + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.63307 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd fenics-book-20130430 + '[' -n '' ']' + NPROCS=8 + make -j8 final make: Entering directory `/usr/src/RPM/BUILD/fenics-book-20130430' ./build.sh book --final ./build.sh manual --final This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) %&-line parsing enabled. 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Underfull \vbox (badness 10000) has occurred while \output is active [285]This is BibTeX, Version 0.99c (Web2C 7.5.7) The top-level auxiliary file: manual.aux The style file: abbrvnat.bst Database file #1: bibliography.bib Warning--empty year in www:cgal Warning--empty year in ErikssonJohnsonIII Warning--empty year in ErikssonJohnsonIII Warning--empty note in www:mayavi Warning--empty year in www:mayavi Warning--empty year in www:meshbuilder Warning--empty year in www:mtl4 Warning--empty note in www:paraview Warning--empty year in www:paraview Warning--empty year in www:parmetis Warning--empty note in www:pastix Warning--empty year in www:pastix Warning--empty year in www:scotch Warning--empty note in www:petsc Warning--empty year in www:petsc Warning--empty year in www:swig Warning--empty author in PythonTutorial Warning--empty year in PythonTutorial Warning--empty note in www:trilinos Warning--empty year in www:trilinos Warning--empty year in www:ublas Warning--empty year in Rossumothers Warning--empty year in www:viper (There were 23 warnings) This is makeindex, version 2.15 [20-Nov-2007] (kpathsea + Thai support). Scanning input file manual.idx....done (458 entries accepted, 0 rejected). Sorting entries.......done (4567 comparisons). Generating output file manual.ind....done (469 lines written, 0 warnings). Output written in manual.ind. Transcript written in manual.ilg. [286]This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) %&-line parsing enabled. entering extended mode (./manual.tex LaTeX2e <2005/12/01> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, farsi, arabic, bulgarian, ukrainian, russian, french, basque, germa n, ngerman, german-x-2008-06-18, ngerman-x-2008-06-18, polish, loaded. 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Rerun to get cross-references right. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Hfootnote.38} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.37} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.36} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.35} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.34} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.33} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.32} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.31} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.30} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.29} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.28} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.27} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.26} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.25} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.24} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.23} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.22} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.21} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.20} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.19} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.18} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.17} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.16} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.15} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.14} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.13} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.12} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.11} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.10} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.9} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.8} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.7} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.6} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.5} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.4} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.3} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.2} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.1} has been referenced but does not exist , replaced by a fixed one {/usr/share/texmf-texlive/fonts/enc/dvips/base/8r.enc} Output written on book.pdf (719 pages, 65527804 bytes). Transcript written on book.log. This is BibTeX, Version 0.99c (Web2C 7.5.7) The top-level auxiliary file: book.aux I found no \bibdata command---while reading file book.aux I found no \bibstyle command---while reading file book.aux (There were 2 error messages) This is makeindex, version 2.15 [20-Nov-2007] (kpathsea + Thai support). Scanning input file book.idx....done (776 entries accepted, 0 rejected). Sorting entries.........done (7953 comparisons). Generating output file book.ind....done (713 lines written, 1 warning). Output written in book.ind. Transcript written in book.ilg. This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) %&-line parsing enabled. entering extended mode (./book.tex LaTeX2e <2005/12/01> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, farsi, arabic, bulgarian, ukrainian, russian, french, basque, germa n, ngerman, german-x-2008-06-18, ngerman-x-2008-06-18, polish, loaded. 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[235] [236] [237] Underfull \vbox (badness 1946) has occurred while \output is active [238 <./cha pters/kirby-3/pdf/MassH1.pdf>] [239 <./chapters/kirby-3/pdf/Poisson.pdf> <./cha pters/kirby-3/pdf/WeightedPoisson.pdf>] Underfull \vbox (badness 10000) has occurred while \output is active [240 <./ch apters/kirby-3/pdf/NavierStokes.pdf>] [241 <./chapters/kirby-3/pdf/MassHdiv.pdf > <./chapters/kirby-3/pdf/MassHcurl.pdf>]) (./tex/13.tex [242] Chapter 13. Underfull \vbox (badness 10000) has occurred while \output is active [243] [244] Underfull \vbox (badness 10000) has occurred while \output is active [245] [246] [247] Underfull \hbox (badness 1371) in paragraph at lines 428--435 \T1/pplx/m/n/10 (+20) Then, a ba-sis for the null space of this ma-trix is con- structed us-ing the sin-gu-lar value [248] [249 <./chapters/kirby-2/pdf/reftri.pdf>] [250 <./chapters/kirby-2/pdf/P3.pdf>] ) (./tex/14.tex [251 <./chapters/kirby-2/p df/struct.pdf>] [252] Chapter 14. [253] [254] [255] [256 <./chapters/wilbers/pdf /pressure_plot.pdf>] [257] [258] Underfull \hbox (badness 10000) in paragraph at lines 350--357 \T1/fvm/m/n/10 /tmp/tmpZ4M_ZO2010-11-9-08-24_instant/instant_module_dff94651124 1aab327593a2d71105c5fc/\T1/pplx/m/n/10 (+20) . [259] [260] [261] [262] [263] [264] [265] [266] [267]) (./tex/15.tex [268] Chapter 15. [269] [270] [271] [272] [273] Underfull \vbox (badness 10000) has occurred while \output is active [274] [275]) (./tex/16.tex [276] [277] [278] Chapter 16. pdfTeX warning: pdflatex (file ./chapters/alnes-2/pdf/ufc_flowdiagram.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed Underfull \vbox (badness 10000) has occurred while \output is active [279] Underfull \vbox (badness 2181) has occurred while \output is active [280 <./cha pters/alnes-2/pdf/ufc_flowdiagram.pdf>] pdfTeX warning: pdflatex (file ./chapters/alnes-2/pdf/ufc_classes.pdf): PDF inc lusion: found PDF version <1.5>, but at most version <1.4> allowed [281 <./chapters/alnes-2/pdf/ufc_cla sses.pdf>] Underfull \vbox (badness 10000) has occurred while \output is active [282] [283] [284] Underfull \vbox (badness 10000) has occurred while \output is active [285] [286] Underfull \vbox (badness 10000) has occurred while \output is active [287] [288] [289] (./chapters/alnes-2/pdf/interval.pdf_tex pdfTeX warning: pdflatex (file ./chapters/alnes-2/pdf/interval.pdf): PDF inclus ion: found PDF version <1.5>, but at most version <1.4> allowed ) Overfull \hbox (7.96405pt too wide) in paragraph at lines 51--730 []|[]| (./chapters/alnes-2/pdf/triangle.pdf_tex pdfTeX warning: pdflatex (file ./chapters/alnes-2/pdf/triangle.pdf): PDF inclus ion: found PDF version <1.5>, but at most version <1.4> allowed ) Overfull \hbox (7.96405pt too wide) in paragraph at lines 50--753 []|[]| (./chapters/alnes-2/pdf/quadrilateral.pdf_tex pdfTeX warning: pdflatex (file ./chapters/alnes-2/pdf/quadrilateral.pdf): PDF i nclusion: found PDF version <1.5>, but at most version <1.4> allowed ) Overfull \hbox (7.96405pt too wide) in paragraph at lines 51--777 []|[]| [290 <./chapters/alnes-2/pdf/interval.pdf> <./chapters/alnes-2/pdf/triangle.pdf >] (./chapters/alnes-2/pdf/tetrahedron.pdf_tex pdfTeX warning: pdflatex (file ./chapters/alnes-2/pdf/tetrahedron.pdf): PDF inc lusion: found PDF version <1.5>, but at most version <1.4> allowed ) Overfull \hbox (7.96405pt too wide) in paragraph at lines 51--802 []|[]| (./chapters/alnes-2/pdf/hexahedron.pdf_tex pdfTeX warning: pdflatex (file ./chapters/alnes-2/pdf/hexahedron.pdf): PDF incl usion: found PDF version <1.5>, but at most version <1.4> allowed ) Overfull \hbox (7.96405pt too wide) in paragraph at lines 53--827 []|[]| Underfull \vbox (badness 7740) has occurred while \output is active [291 <./cha pters/alnes-2/pdf/quadrilateral.pdf> <./chapters/alnes-2/pdf/tetrahedron.pdf>] (./chapters/alnes-2/pdf/numbering_example_triangles.pdf_tex pdfTeX warning: pdflatex (file ./chapters/alnes-2/pdf/numbering_example_triangl es.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allo wed ) (./chapters/alnes-2/pdf/numbering_example_quadrilaterals.pdf_tex pdfTeX warning: pdflatex (file ./chapters/alnes-2/pdf/numbering_example_quadril aterals.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed ) [292 <./chapte rs/alnes-2/pdf/hexahedron.pdf>] [293 <./chapters/alnes-2/pdf/numbering_example_ triangles.pdf> <./chapters/alnes-2/pdf/numbering_example_quadrilaterals.pdf>] (./chapters/alnes-2/pdf/ordering_example_triangle.pdf_tex pdfTeX warning: pdflatex (file ./chapters/alnes-2/pdf/ordering_example_triangle .pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowe d ) (./chapters/alnes-2/pdf/ordering_example_tetrahedron.pdf_tex pdfTeX warning: pdflatex (file ./chapters/alnes-2/pdf/ordering_example_tetrahed ron.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> all owed ) [294 <./chapters/alnes-2/pdf/ordering_example_triangle.pdf> <./chapters/alnes-2 /pdf/ordering_example_tetrahedron.pdf>] (./chapters/alnes-2/pdf/orientation_example_triangles.pdf_tex pdfTeX warning: pdflatex (file ./chapters/alnes-2/pdf/orientation_example_trian gles.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> al lowed ) [295 <./chapters/alnes-2/pdf/orientation_example_triangles.pdf>] [296] [297]) (./tex/17.tex [298] Chapter 17. Underfull \vbox (badness 1092) has occurred while \output is active [299] [300] Underfull \vbox (badness 10000) has occurred while \output is active [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] [311] [312] [313] [314] (/usr/share/texmf-texlive/tex/latex/microtype/mt-euf.cfg) [315] (./chapters/alnes-1/pdf/expr.pdf_tex pdfTeX warning: pdflatex (file ./chapters/alnes-1/pdf/expr.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed ) [316 <./chapters/alnes-1/pdf/expr.pdf>] (./chapters/alnes-1/pdf/stiffness.pdf_tex pdfTeX warning: pdflatex (file ./chapters/alnes-1/pdf/stiffness.pdf): PDF inclu sion: found PDF version <1.5>, but at most version <1.4> allowed ) [317] [318 <./chapters/alnes-1/pdf/st iffness.pdf>] [319] Underfull \vbox (badness 10000) has occurred while \output is active [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] Underfull \vbox (badness 1681) has occurred while \output is active [330] [331] [332] [333]) (./tex/18.tex [334] Chapter 18. 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[340] [341] [342 <./chapters/hoffman-2/pdf/speedup_solve.pdf> <./chapters/hoffm an-2/pdf/speedup_unrivara.pdf>] [343] [344] [345] [346] [347] Overfull \hbox (1.6596pt too wide) in paragraph at lines 807--818 [][] [348] [349 <./chapters/hoffman-2/pdf/force_smooth01.pdf> <./chapters/hoffman-2/ pdf/force_hybrid01.pdf> <./chapters/hoffman-2/pdf/force_smooth02.pdf> <./chapte rs/hoffman-2/pdf/force_hybrid02.pdf> <./chapters/hoffman-2/pdf/force_smooth03.p df> <./chapters/hoffman-2/pdf/force_hybrid03.pdf>] [350] [351 <./chapters/hoffman-2/pdf/ swap.pdf> <./chapters/hoffman-2/pdf/swap_config1.pdf>] [352] [353 <./chapters/hoffman-2/png/fsi 3_vel_050.png (PNG copy)> <./chapters/hoffman-2/png/fsi3_theta_050.png (PNG cop y)> <./chapters/hoffman-2/png/fsi3_vel_250.png (PNG copy)> <./chapters/hoffman- 2/png/fsi3_theta_250.png (PNG copy)>] [354 <./chapters/hoffman-1/png/fig2b.png (PNG copy)> <./chapters/hoffman-1/png/fig2c.png (PNG copy)>] LaTeX Warning: Float too large for page by 4.412pt on input line 1281. ) (./tex/19.tex [355] [356] [357] [358] [359] [360] Chapter 19. Overfull \hbox (1.19252pt too wide) in paragraph at lines 5--5 |[]\T1/pplx/m/it/20.74 Lessons learned in mixed lan-guage pro-gram-ming| [361] (./chapters/mardal-2/code/Array.h) (./chapters/mardal-2/code/Array_1.i) (./chapters/mardal-2/code/setup.py [362]) [363] (./chapters/mardal-2/code/segfault_test.py) [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377]) (./tex/Part3.tex [378] [379] [380]) (./tex/20.tex Chapter 20. [381] [382] [383 <./chapters/kirby-6/pdf/P3.pdf>] pdfTeX warning: pdflatex (file ./chapters/terrel/pdf/MINI.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed [384 <./chapters/kirby-6/pdf/CR1.pdf> <./cha pters/terrel/pdf/MINI.pdf>] [385] Underfull \vbox (badness 10000) has occurred while \output is active [386] LaTeX Warning: Float too large for page by 3.70213pt on input line 417. 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[419] Underfull \vbox (badness 1515) has occurred while \output is active [420] Underfull \vbox (badness 1038) has occurred while \output is active [421] Underfull \vbox (badness 2662) has occurred while \output is active [422] [423] [424] Underfull \vbox (badness 2351) has occurred while \output is active [425] [426] [427] [428] [429] [430] [431 <./chapters/mortensen/pd f/Burgers_KE_IM1.pdf> <./chapters/mortensen/pdf/Burgers_KE_IM2.pdf>] [432] Underfull \hbox (badness 1331) in paragraph at lines 1115--1115 []\T1/pplx/m/n/9 (+20) Figure 22.3: |Ac-cu-mu-lated er-ror Underfull \hbox (badness 1331) in paragraph at lines 1132--1132 []\T1/pplx/m/n/9 (+20) Figure 22.4: |Ac-cu-mu-lated er-ror [433 <./chapters/mortensen/pdf/OS_init.pdf> <./chapters/mortensen/pdf/OrrS_eigv als.pdf>] [434 <./chapters/mortensen/pdf/OS_init_cfl_1.pdf> <./chapters/mortens en/pdf/OS_init_cfl_0.pdf> <./chapters/mortensen/pdf/OS_init_dx_1.pdf> <./chapte rs/mortensen/pdf/OS_init_dx_0.pdf>] Underfull \vbox (badness 10000) has occurred while \output is active [435] [436 <./chapters/mortensen/pdf/OS_energy_cfl_0_1_model_1.pdf> <./chapters/morte nsen/pdf/OS_energy_cfl_0_1_model_0.pdf> <./chapters/mortensen/pdf/OS_energy_cfl _0_05_model_1.pdf> <./chapters/mortensen/pdf/OS_energy_cfl_0_05_model_0.pdf>] [437 <./chapters/mortensen/pdf/TG_disserror_model_0_cfl_0_05_Re_100_dofs.pdf> < ./chapters/mortensen/pdf/TG_energyerror_model_0_cfl_0_05_Re_100_dofs.pdf>]) (./tex/23.tex [438] Chapter 23. 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[455] Underfull \vbox (badness 4391) has occurred while \output is active [456 <./cha pters/hentschel/pdf/ChiariImage2.pdf>] [457] [458] [459 <./chapters/hentschel/pdf/sin_p ulse.pdf>] [460] [461] [462] [463] [464 <./chapters/hentschel/pdf/gmsh.pdf>] [465 <./chapters/hen tschel/pdf/pulse_f1_08_sysmax_nmb7.pdf> <./chapters/hentschel/pdf/pulse_f1_08_s ysdia_nmb18.pdf> <./chapters/hentschel/pdf/pulse_f1_08_diamin1_nmb25.pdf>] [466] [467 <./chapters/hentschel/pdf/sin_sysmax_nmb2.pdf> <./chapters/hentschel/pdf/s in_sysdia_nmb4.pdf> <./chapters/hentschel/pdf/sin_diamin_nmb6.pdf>] [468 <./cha pters/hentschel/pdf/pulse_f1_08_elliptic_sysmax_nmb7.pdf> <./chapters/hentschel /pdf/pulse_f1_08_elliptic_sysdia_nmb18.pdf> <./chapters/hentschel/pdf/pulse_f1_ 08_elliptic_diamin1_nmb25.pdf> <./chapters/hentschel/pdf/pulse_f1_08_elliptic_e ccentric_sysmax_nmb7.pdf> <./chapters/hentschel/pdf/pulse_f1_08_elliptic_eccent ric_sysdia_nmb18.pdf> <./chapters/hentschel/pdf/pulse_f1_08_elliptic_eccentric_ diamin1_nmb25.pdf>]) (./tex/25.tex [469 <./chapters/hentschel/pdf/pulse_syrinx_ f1_08_syrinx05_sysmax_nmb7.pdf> <./chapters/hentschel/pdf/pulse_syrinx_f1_08_sy rinx05_sysdia_nmb18.pdf> <./chapters/hentschel/pdf/pulse_syrinx_f1_08_syrinx05_ diamin1_nmb25.pdf>] [470] Chapter 25. [471] [472 <./chapters/lopes/pdf/nazare1.p df>] [473] (./chapters/lopes/pdf/graph.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/graph.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed ) [474pdfTeX warning (ext4): destination with the same identifier (name{equation.25.3.1}) has been already used, duplicate i gnored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.290 \end{figure} ]pdfTeX warning (ext4): destination with the same identifier (name{equation.25.3.2}) has been already used, duplicate ignored \relax l.295 \begin{equation} pdfTeX warning (ext4): destination with the same identifi er (name{equation.25.3.3}) has been already used, duplicate ignored \relax l.307 \begin{equation} [475 <./chapters/lopes/pdf/graph.pdf>]pdfTeX warning (ex t4): destination with the same identifier (name{equation.25.3.1}) has been alre ady used, duplicate ignored \relax l.461 \end{align} pdfTeX warning (ext4): destination with the same identifier (name{equation.25.3.2}) has been already used, duplicate ignored \relax l.461 \end{align} Underfull \vbox (badness 2744) has occurred while \output is active [476]pdfTeX warning (ext4): destination with the same identifier (name{equation.25.3.1}) h as been already used, duplicate ignored \relax l.512 \end{align} pdfTeX warning (ext4): destination with the same identifier (n ame{equation.25.3.2}) has been already used, duplicate ignored \relax l.512 \end{align} pdfTeX warning (ext4): destination with the same identifier (n ame{equation.25.3.1}) has been already used, duplicate ignored \relax l.545 \end{align} pdfTeX warning (ext4): destination with the same identifier (n ame{equation.25.3.2}) has been already used, duplicate ignored \relax l.545 \end{align} [477]pdfTeX warning (ext4): destination with the same identif ier (name{equation.25.3.1}) has been already used, duplicate ignored \relax l.571 \end{align} pdfTeX warning (ext4): destination with the same identifier (name{equation.25.3.2}) has been already used, duplicate ignored \relax l.571 \end{align} [478] Underfull \hbox (badness 5681) in paragraph at lines 667--667 []\T1/pplx/m/n/9 (+20) Figure 25.3: |Pos-i-tive part of [479 <./chapters/lopes/pdf/phase_velocity_simple.pdf>] Overfull \hbox (0.95473pt too wide) in paragraph at lines 771--777 \T1/pplx/m/n/10 (-20) Corr and RungeKutta classes (see \T1/fvm/m/n/10 dolfwave/ src/predictorcorrector \T1/pplx/m/n/10 (-20) and \T1/fvm/m/n/10 dolfwave/src/ru ngekutta\T1/pplx/m/n/10 (-20) ). [480pdfTeX warning (ext4): destination with the same identifier (name{equation. 25.5.1}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.820 pdfTeX warning (ext4): destination with the same identifier (name{equatio n.25.5.2}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.820 ] Underfull \vbox (badness 10000) has occurred while \output is active [481] [482] [483] Underfull \vbox (badness 10000) has occurred while \output is active [484] (./chapters/lopes/pdf/spike_shelf.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/spike_shelf.pdf): PDF inclu sion: found PDF version <1.5>, but at most version <1.4> allowed ) [485] Underfull \hbox (badness 1377) in paragraph at lines 1290--1290 \T1/pplx/m/n/9 (+20) pan-els) and ZTC (lower pan-els) Underfull \hbox (badness 1377) in paragraph at lines 1305--1305 \T1/pplx/m/n/9 (+20) pan-els) and ZTC (lower pan-els) Underfull \hbox (badness 1377) in paragraph at lines 1319--1319 \T1/pplx/m/n/9 (+20) pan-els) and ZTC (lower pan-els) [486 <./chapters/lopes/pdf/spike_shelf.pdf> <./chapters/lopes/png/L2_spike_stab ility.png> <./chapters/lopes/png/L2_shelf_stability.png> <./chapters/lopes/png/ L1_spike_stability.png> <./chapters/lopes/png/L1_shelf_stability.png>] [487 <./ chapters/lopes/png/L0_5_spike_stability.png> <./chapters/lopes/png/L0_5_shelf_s tability.png> <./chapters/lopes/png/L2_dx_0_02_hm_spike_spectrum_StdPot.png> <. /chapters/lopes/png/L2_dx_0_02_hm_shelf_spectrum_StdPot.png> <./chapters/lopes/ png/L2_dx_0_02_hm_spike_spectrum_Zhao.png> <./chapters/lopes/png/L2_dx_0_02_hm_ shelf_spectrum_Zhao.png> <./chapters/lopes/png/L1_dx_0_1_hm_spike_spectrum_StdP ot.png> <./chapters/lopes/png/L1_dx_0_1_hm_shelf_spectrum_StdPot.png> <./chapte rs/lopes/png/L1_dx_0_1_hm_spike_spectrum_Zhao.png> <./chapters/lopes/png/L1_dx_ 0_1_hm_shelf_spectrum_Zhao.png>] [488 <./chapters/lopes/png/L0_5_dx_0_25_hm_spi ke_spectrum_StdPot.png> <./chapters/lopes/png/L0_5_dx_0_25_hm_shelf_spectrum_St dPot.png> <./chapters/lopes/png/L0_5_dx_0_25_hm_spike_spectrum_Zhao.png> <./cha pters/lopes/png/L0_5_dx_0_25_hm_shelf_spectrum_Zhao.png>] [489] [490] LaTeX Warning: `!h' float specifier changed to `!ht'. 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[491 <./chapters/lopes/pdf/submergedbar.pdf>] [492 <./chapters/lopes/pdf/ZhaoNw ogu.pdf> <./chapters/lopes/pdf/deptheps.pdf>] [493 <./chapters/lopes/pdf/epsilo n0_1.pdf> <./chapters/lopes/pdf/epsilon0_25.pdf>] [494 <./chapters/lopes/pdf/epsilon0_5. pdf>] [495 <./chapters/lopes/pdf/eta000000.pdf> <./chapters/lopes/pdf/eta002000 .pdf> <./chapters/lopes/pdf/eta004000.pdf> <./chapters/lopes/pdf/eta006000.pdf> <./chapters/lopes/pdf/eta007972.pdf> <./chapters/lopes/pdf/eta009946.pdf>] [496 <./chapters/lopes/pdf/unstr.pdf> <./chapters/lopes/pdf/unstrcorner.pdf>] Underfull \vbox (badness 4048) has occurred while \output is active [497 <./cha pters/lopes/pdf/detail_unstr.pdf>] (./chapters/lopes/pdf/scale_tex.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/scale_tex.pdf): PDF inclusi on: found PDF version <1.5>, but at most version <1.4> allowed ) (./chapters/lopes/pdf/sponge_tex.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/sponge_tex.pdf): PDF inclus ion: found PDF version <1.5>, but at most version <1.4> allowed ) [498 <./chapters/lopes/pdf/scale_tex.pd f> <./chapters/lopes/pdf/depth.pdf>] [499 <./chapters/lopes/pdf/sponge_tex.pdf> <./chapters/lopes/pdf/eta.pdf> <./chapters/lopes/pdf/pvel2.pdf>] [500 <./chapt ers/lopes/pdf/etaprofile.pdf> <./chapters/lopes/pdf/velprofile.pdf>] pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/depth0.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/depth6.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed [501 <./chapters/lopes/pdf/depth0.pdf> <./c hapters/lopes/pdf/depth6.pdf>] pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/eta3.pdf): PDF inclusion: f ound PDF version <1.5>, but at most version <1.4> allowed [502 <./chapters/lopes/pdf/eta1.pdf> <./chap ters/lopes/pdf/eta3.pdf> <./chapters/lopes/pdf/eta45.pdf>] pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/eta6.pdf): PDF inclusion: f ound PDF version <1.5>, but at most version <1.4> allowed [503 <./chapters/lopes/pdf/eta6.pdf>]) (./tex/26.tex [504] Chapter 26. [505] Underfull \vbox (badness 10000) has occurred while \output is active [506] Underfull \vbox (badness 1917) has occurred while \output is active [507] [508] Underfull \vbox (badness 10000) has occurred while \output is active [509] Underfull \vbox (badness 10000) has occurred while \output is active [510] [511] Underfull \vbox (badness 10000) has occurred while \output is active [512] [513] [514] [515] [516] [517] Underfull \vbox (badness 3291) has occurred while \output is active [518] Underfull \vbox (badness 2181) has occurred while \output is active [519] [520] [521] Underfull \hbox (badness 1178) in paragraph at lines 1410--1410 []\T1/pplx/m/n/9 (+20) Figure 26.6: |Com-plete DOLFIN Underfull \hbox (badness 1102) in paragraph at lines 1410--1410 \T1/pplx/m/n/9 (+20) solver for the com-press-ible neo- LaTeX Warning: Float too large for page by 23.41197pt on input line 1532. [522] [523] [524] [525]) (./tex/27.tex [526] Chapter 27. [527] [528] Underfull \hbox (badness 4316) in paragraph at lines 296--296 []\T1/pplx/m/n/9 (+20) Figure 27.2: |Sam-ples of how Overfull \hbox (1.10251pt too wide) in paragraph at lines 300--306 []\T1/pplx/m/n/10 (-20) In CBC.Twist, each of the forms listed in Ta-ble [][]27 .1[][] have been im-ple-mented in the file \T1/fvm/m/n/10 kinematics.py [529 <./chapters/narayanan/images/pdf/continuumpotato.pdf>] [530] [531] Underfull \hbox (badness 1019) in paragraph at lines 449--449 \T1/pplx/m/n/9 (+20) en-ergy func-tion for a two term [532] Underfull \hbox (badness 10000) in paragraph at lines 597--597 []\T1/pplx/m/n/9 (+20) Figure 27.6: |The rel-e- Underfull \hbox (badness 10000) in paragraph at lines 597--597 \T1/pplx/m/n/9 (+20) vant sec-tion of the class Underfull \hbox (badness 10000) in paragraph at lines 597--597 \T1/fvm/m/n/9 StaticMomentumBalanceSolver\T1/pplx/m/n/9 (+20) , [533] [534] [535] [536] [537 <./chapters/nara yanan/images/png/twistedcube.png (PNG copy)>] [538] [539] [540] [541 <./chapters/n arayanan/images/png/release_000.png (PNG copy)> <./chapters/narayanan/images/pn g/release_100.png (PNG copy)> <./chapters/narayanan/images/png/release_200.png (PNG copy)> <./chapters/narayanan/images/png/release_300.png (PNG copy)> <./cha pters/narayanan/images/png/release_400.png (PNG copy)> <./chapters/narayanan/im ages/png/release_500.png (PNG copy)>] [542 <./chapters/narayanan/images/pdf/ene rgies.pdf>] ) (./tex/28.tex [543] [544 <./chapters/narayanan/images/png/dolphin_000.png (PNG copy)> <./chapters/n arayanan/images/png/dolphin_001.png (PNG copy)> <./chapters/narayanan/images/pn g/dolphin_002.png (PNG copy)> <./chapters/narayanan/images/png/dolphin_003.png (PNG copy)> <./chapters/narayanan/images/png/dolphin_004.png (PNG copy)> <./cha pters/narayanan/images/png/dolphin_005.png (PNG copy)> <./chapters/narayanan/im ages/png/dolphin_006.png (PNG copy)> <./chapters/narayanan/images/png/dolphin_0 07.png (PNG copy)> <./chapters/narayanan/images/png/dolphin_008.png (PNG copy)> ] Chapter 28. [545] [546] Underfull \vbox (badness 4899) has occurred while \output is active [547] [548 <./chapters/hoffman-1/png/fig1a.png (PNG copy)> <./chapters/hoffman-1/png/fig1b.png (PNG copy)>] [549 <./chapters/ hoffman-1/png/fig3a.png (PNG copy)> <./chapters/hoffman-1/png/fig3b.png (PNG co py)>] Underfull \vbox (badness 1024) has occurred while \output is active [550 <./cha pters/hoffman-1/png/Hoffman_fig2a.png (PNG copy)> <./chapters/hoffman-1/png/Hof fman_fig2b.png (PNG copy)> <./chapters/hoffman-1/png/Hoffman_fig2c.png (PNG cop y)> <./chapters/hoffman-1/png/Hoffman_fig2d.png (PNG copy)> <./chapters/hoffman -1/png/Hoffman_fig3a.png (PNG copy)> <./chapters/hoffman-1/png/Hoffman_fig3b.pn g (PNG copy)> <./chapters/hoffman-1/png/Hoffman_fig3c.png (PNG copy)> <./chapte rs/hoffman-1/png/Hoffman_fig3d.png (PNG copy)>] Underfull \vbox (badness 7047) has occurred while \output is active [551 <./cha pters/hoffman-1/png/Hoffman_fig5a.png (PNG copy)> <./chapters/hoffman-1/png/Hof fman_fig5b.png (PNG copy)> <./chapters/hoffman-1/png/Hoffman_fig5c.png (PNG cop y)> <./chapters/hoffman-1/png/Hoffman_fig5d.png (PNG copy)> <./chapters/hoffman -1/png/rlg_vorticity.png (PNG copy)> <./chapters/hoffman-1/png/oilfilm_back_sim .png (PNG copy)>] Underfull \hbox (badness 1584) in paragraph at lines 431--431 \T1/pplx/m/n/9 (+20) benchmark prob-lem FLUSTRUK- Underfull \hbox (badness 1783) in paragraph at lines 431--431 \T1/pplx/m/n/9 (+20) uni-formly re-fined meshes us-ing [552 <./chapters/hoffman-1/png/fsi_bench3D_displacement_aligned.pdf>] [553 <./chapters/hoffman-1/png/cube000 .png (PNG copy)> <./chapters/hoffman-1/png/cube115.png (PNG copy)> <./chapters/ hoffman-1/png/cube125.png (PNG copy)> <./chapters/hoffman-1/png/cube168.png (PN G copy)> <./chapters/hoffman-1/png/cube187.png (PNG copy)> <./chapters/hoffman- 1/png/cube405.png (PNG copy)> <./chapters/hoffman-1/png/cube550.png (PNG copy)> <./chapters/hoffman-1/png/cube649.png (PNG copy)>]) (./tex/29.tex [554] Chapter 29. [555] [556] pdfTeX warning: pdflatex (file ./chapters/selim/pdf/mapping.pdf): PDF inclusion : found PDF version <1.5>, but at most version <1.4> allowed [557 <./chapters/selim/pdf/mapping.pdf>] Underfull \vbox (badness 2512) has occurred while \output is active [558] [559 <./chapters/selim/pdf/primal.pdf>] [560] [561] Underfull \vbox (badness 10000) has occurred while \output is active [562] Underfull \vbox (badness 10000) has occurred while \output is active [563] Underfull \vbox (badness 10000) has occurred while \output is active [564] [565] Underfull \hbox (badness 3579) in paragraph at lines 929--929 []\T1/pplx/m/n/9 (+20) Figure 29.7: |A schematic pic- Underfull \hbox (badness 3354) in paragraph at lines 929--929 \T1/pplx/m/n/9 (+20) ture of the adap-tive FSI al-go- [566 <./chapters/selim/pdf/adaptive.pdf> ] [567] [568]) (./tex/30.tex [569 <./chapters/selim/p ng/new_channel.png (PNG copy)> <./chapters/selim/png/channel_test_zoom.png (PNG copy)>] [570 <./chapters/selim/png/channelZF.png (PNG copy)> <./chapters/selim /png/channelZS.png (PNG copy)> <./chapters/selim/png/channelZM.png (PNG copy)>] [571 <./chapters/selim/png/new_cavity.png> <./chapters/selim/png/zoom_cavity.pn g (PNG copy)> <./chapters/selim/pdf/plot.pdf>] [572] Chapter 30. [573] (./chapters/nikbakht/pdf/domain.pdf_tex ) [574 <./chapters/nikbakht/pdf/domain.pd f>] [575] [576] [577] [578] [579] [580] [581] [582 <./chapters/nikba kht/png/mesh.png> <./chapters/nikbakht/png/result.png>] [583]) (./tex/31.tex [584] [585] [586] Chapter 31. [587] [588 <./chapters/vynnytska/png/la yout.png>] Underfull \vbox (badness 10000) has occurred while \output is active [589] [590] [591] Underfull \vbox (badness 10000) has occurred while \output is active [592] Underfull \vbox (badness 6157) has occurred while \output is active [593] [594] Underfull \hbox (badness 2027) in paragraph at lines 766--766 \T1/pplx/m/n/8.5 main predictor--corrector al-go-rithm, Underfull \hbox (badness 1253) in paragraph at lines 766--766 \T1/pplx/m/n/8.5 ini-tial-iza-tion is not in-cluded here). LaTeX Warning: Float too large for page by 15.77048pt on input line 768. [595] [596] [597] [598] Underfull \hbox (badness 1038) in paragraph at lines 975--975 []\T1/pplx/m/n/9 (+20) Figure 31.7: |Di-men-sion-less root Overfull \hbox (1.66838pt too wide) in paragraph at lines 981--1019 [][] Overfull \hbox (1.66838pt too wide) in paragraph at lines 1025--1053 [][] [599] [600 <./chapters/vynnytska/png/u_rms.png>] [601 <./chapters/vynnytska/png /tmB.png (PNG copy)> <./chapters/vynnytska/png/visB.png (PNG copy)> <./chapters /vynnytska/png/tmC.png (PNG copy)> <./chapters/vynnytska/png/visC.png (PNG copy )> <./chapters/vynnytska/png/tmD.png (PNG copy)> <./chapters/vynnytska/png/visD .png (PNG copy)> <./chapters/vynnytska/png/tmE.png (PNG copy)> <./chapters/vynn ytska/png/visE.png (PNG copy)> <./chapters/vynnytska/png/tmF.png (PNG copy)> <. /chapters/vynnytska/png/visF.png (PNG copy)> <./chapters/vynnytska/png/tmG.png (PNG copy)> <./chapters/vynnytska/png/visG.png (PNG copy)> <./chapters/vynnytsk a/png/tmleg.png (PNG copy)> <./chapters/vynnytska/png/visleg.png (PNG copy)>] [602 <./chapters/vynnytska/png/tmH.png (PNG copy)> <./chapters/vynnytska/png/vi sH.png (PNG copy)> <./chapters/vynnytska/png/tmI.png (PNG copy)> <./chapters/vy nnytska/png/visI.png (PNG copy)> <./chapters/vynnytska/png/tmJ.png (PNG copy)> <./chapters/vynnytska/png/visJ.png (PNG copy)> <./chapters/vynnytska/png/tmK.pn g (PNG copy)> <./chapters/vynnytska/png/visK.png (PNG copy)> <./chapters/vynnyt ska/png/tmL.png (PNG copy)> <./chapters/vynnytska/png/visL.png (PNG copy)> <./c hapters/vynnytska/png/tmM.png (PNG copy)> <./chapters/vynnytska/png/visM.png (P NG copy)>]) (./tex/32.tex Chapter 32. [603] [604] Underfull \vbox (badness 1496) has occurred while \output is active [605] Underfull \vbox (badness 10000) has occurred while \output is active [606] [607] [608] [609 <./chapters/schroll/pdf/h0_typica l.pdf> <./chapters/schroll/pdf/h_typical.pdf>] [610 <./chapters/schroll/pdf/a1a 2scan4.pdf> <./chapters/schroll/pdf/a1a2scan4-5.pdf> <./chapters/schroll/pdf/b1 b2scan4.pdf> <./chapters/schroll/pdf/b1b2scan4-5.pdf> <./chapters/schroll/pdf/4 Dscan3.pdf> <./chapters/schroll/pdf/4Dscan3-5.pdf>] [611 <./chapters/schroll/pdf/4Dscan 3b.pdf> <./chapters/schroll/pdf/4Dscan3b-5.pdf> <./chapters/schroll/pdf/4Dsampl e3-5.pdf> <./chapters/schroll/pdf/4Dsample3b-5.pdf> <./chapters/schroll/pdf/4D- 1scan4b.pdf> <./chapters/schroll/pdf/4D-1scan4b-5.pdf>]) (./tex/33.tex [612] Chapter 33. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding), (hyperref) removing `math shift' on input line 23. 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[625] Package Fancyhdr Warning: \headheight is too small (12.0pt): Make it at least 12.79222pt. We now make it that large for the rest of the document. This may cause the page layout to be inconsistent, however. [626]) (./tex/34.tex Package Fancyhdr Warning: \headheight is too small (12.0pt): Make it at least 12.79222pt. We now make it that large for the rest of the document. This may cause the page layout to be inconsistent, however. [627] Package Fancyhdr Warning: \headheight is too small (12.0pt): Make it at least 12.79222pt. We now make it that large for the rest of the document. This may cause the page layout to be inconsistent, however. [628] Chapter 34. 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[223 <./chapters/logg-1/pdf/ufl_ffc_u fc.pdf>] [224] [225] [226] [227] Underfull \hbox (badness 1975) in paragraph at lines 428--428 \T1/pplx/m/n/9 (+20) guage, Anal-y-sis, Rep-re-sen-ta-tion, [228] [229 <./chapters/logg-1/pdf/compilerdesign.pdf>] [230] [231] Underfull \hbox (badness 2961) in paragraph at lines 626--647 \T1/pplx/m/n/10 (+20) interface by giv-ing the ad-di-tional op-tions \T1/fvm/m/ n/10 -f eliminate_zeros\T1/pplx/m/n/10 (+20) , \T1/fvm/m/n/10 -f simplify_expre ssions\T1/pplx/m/n/10 (+20) , Underfull \hbox (badness 1308) in paragraph at lines 701--701 []\T1/pplx/m/n/9 (+20) Figure 11.7: |JIT com-pi-la-tion of [232]) (./tex/12.tex [233 <./chapters/logg-1/pdf/jit.pdf>] [234] Chapter 12. [235] [236] [237] Underfull \vbox (badness 1946) has occurred while \output is active [238 <./cha pters/kirby-3/pdf/MassH1.pdf>] [239 <./chapters/kirby-3/pdf/Poisson.pdf> <./cha pters/kirby-3/pdf/WeightedPoisson.pdf>] Underfull \vbox (badness 10000) has occurred while \output is active [240 <./ch apters/kirby-3/pdf/NavierStokes.pdf>] [241 <./chapters/kirby-3/pdf/MassHdiv.pdf > <./chapters/kirby-3/pdf/MassHcurl.pdf>]) (./tex/13.tex [242] Chapter 13. Underfull \vbox (badness 10000) has occurred while \output is active [243] [244] Underfull \vbox (badness 10000) has occurred while \output is active [245] [246] [247] Underfull \hbox (badness 1371) in paragraph at lines 428--435 \T1/pplx/m/n/10 (+20) Then, a ba-sis for the null space of this ma-trix is con- structed us-ing the sin-gu-lar value [248] [249 <./chapters/kirby-2/pdf/reftri.pdf>] [250 <./chapters/kirby-2/pdf/P3.pdf>] ) (./tex/14.tex [251 <./chapters/kirby-2/p df/struct.pdf>] [252] Chapter 14. [253] [254] [255] [256 <./chapters/wilbers/pdf /pressure_plot.pdf>] [257] [258] Underfull \hbox (badness 10000) in paragraph at lines 350--357 \T1/fvm/m/n/10 /tmp/tmpZ4M_ZO2010-11-9-08-24_instant/instant_module_dff94651124 1aab327593a2d71105c5fc/\T1/pplx/m/n/10 (+20) . [259] [260] [261] [262] [263] [264] [265] [266] [267]) (./tex/15.tex [268] Chapter 15. 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Underfull \vbox (badness 1092) has occurred while \output is active [299] [300] Underfull \vbox (badness 10000) has occurred while \output is active [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] [311] [312] [313] [314] (/usr/share/texmf-texlive/tex/latex/microtype/mt-euf.cfg) [315] (./chapters/alnes-1/pdf/expr.pdf_tex pdfTeX warning: pdflatex (file ./chapters/alnes-1/pdf/expr.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed ) [316 <./chapters/alnes-1/pdf/expr.pdf>] (./chapters/alnes-1/pdf/stiffness.pdf_tex pdfTeX warning: pdflatex (file ./chapters/alnes-1/pdf/stiffness.pdf): PDF inclu sion: found PDF version <1.5>, but at most version <1.4> allowed ) [317] [318 <./chapters/alnes-1/pdf/st iffness.pdf>] [319] Underfull \vbox (badness 10000) has occurred while \output is active [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] Underfull \vbox (badness 1681) has occurred while \output is active [330] [331] [332] [333]) (./tex/18.tex [334] Chapter 18. 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[340] [341] [342 <./chapters/hoffman-2/pdf/speedup_solve.pdf> <./chapters/hoffm an-2/pdf/speedup_unrivara.pdf>] [343] [344] [345] [346] [347] Overfull \hbox (1.6596pt too wide) in paragraph at lines 807--818 [][] [348] [349 <./chapters/hoffman-2/pdf/force_smooth01.pdf> <./chapters/hoffman-2/ pdf/force_hybrid01.pdf> <./chapters/hoffman-2/pdf/force_smooth02.pdf> <./chapte rs/hoffman-2/pdf/force_hybrid02.pdf> <./chapters/hoffman-2/pdf/force_smooth03.p df> <./chapters/hoffman-2/pdf/force_hybrid03.pdf>] [350] [351 <./chapters/hoffman-2/pdf/ swap.pdf> <./chapters/hoffman-2/pdf/swap_config1.pdf>] [352] [353 <./chapters/hoffman-2/png/fsi 3_vel_050.png (PNG copy)> <./chapters/hoffman-2/png/fsi3_theta_050.png (PNG cop y)> <./chapters/hoffman-2/png/fsi3_vel_250.png (PNG copy)> <./chapters/hoffman- 2/png/fsi3_theta_250.png (PNG copy)>] [354 <./chapters/hoffman-1/png/fig2b.png (PNG copy)> <./chapters/hoffman-1/png/fig2c.png (PNG copy)>] LaTeX Warning: Float too large for page by 4.412pt on input line 1281. ) (./tex/19.tex [355] [356] [357] [358] [359] [360] Chapter 19. Overfull \hbox (1.19252pt too wide) in paragraph at lines 5--5 |[]\T1/pplx/m/it/20.74 Lessons learned in mixed lan-guage pro-gram-ming| [361] (./chapters/mardal-2/code/Array.h) (./chapters/mardal-2/code/Array_1.i) (./chapters/mardal-2/code/setup.py [362]) [363] (./chapters/mardal-2/code/segfault_test.py) [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377]) (./tex/Part3.tex [378] [379] [380]) (./tex/20.tex Chapter 20. [381] [382] [383 <./chapters/kirby-6/pdf/P3.pdf>] pdfTeX warning: pdflatex (file ./chapters/terrel/pdf/MINI.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed [384 <./chapters/kirby-6/pdf/CR1.pdf> <./cha pters/terrel/pdf/MINI.pdf>] [385] Underfull \vbox (badness 10000) has occurred while \output is active [386] LaTeX Warning: Float too large for page by 3.70213pt on input line 417. 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[419] Underfull \vbox (badness 1515) has occurred while \output is active [420] Underfull \vbox (badness 1038) has occurred while \output is active [421] Underfull \vbox (badness 2662) has occurred while \output is active [422] [423] [424] Underfull \vbox (badness 2351) has occurred while \output is active [425] [426] [427] [428] [429] [430] [431 <./chapters/mortensen/pd f/Burgers_KE_IM1.pdf> <./chapters/mortensen/pdf/Burgers_KE_IM2.pdf>] [432] Underfull \hbox (badness 1331) in paragraph at lines 1115--1115 []\T1/pplx/m/n/9 (+20) Figure 22.3: |Ac-cu-mu-lated er-ror Underfull \hbox (badness 1331) in paragraph at lines 1132--1132 []\T1/pplx/m/n/9 (+20) Figure 22.4: |Ac-cu-mu-lated er-ror [433 <./chapters/mortensen/pdf/OS_init.pdf> <./chapters/mortensen/pdf/OrrS_eigv als.pdf>] [434 <./chapters/mortensen/pdf/OS_init_cfl_1.pdf> <./chapters/mortens en/pdf/OS_init_cfl_0.pdf> <./chapters/mortensen/pdf/OS_init_dx_1.pdf> <./chapte rs/mortensen/pdf/OS_init_dx_0.pdf>] Underfull \vbox (badness 10000) has occurred while \output is active [435] [436 <./chapters/mortensen/pdf/OS_energy_cfl_0_1_model_1.pdf> <./chapters/morte nsen/pdf/OS_energy_cfl_0_1_model_0.pdf> <./chapters/mortensen/pdf/OS_energy_cfl _0_05_model_1.pdf> <./chapters/mortensen/pdf/OS_energy_cfl_0_05_model_0.pdf>] [437 <./chapters/mortensen/pdf/TG_disserror_model_0_cfl_0_05_Re_100_dofs.pdf> < ./chapters/mortensen/pdf/TG_energyerror_model_0_cfl_0_05_Re_100_dofs.pdf>]) (./tex/23.tex [438] Chapter 23. 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[455] Underfull \vbox (badness 4391) has occurred while \output is active [456 <./cha pters/hentschel/pdf/ChiariImage2.pdf>] [457] [458] [459 <./chapters/hentschel/pdf/sin_p ulse.pdf>] [460] [461] [462] [463] [464 <./chapters/hentschel/pdf/gmsh.pdf>] [465 <./chapters/hen tschel/pdf/pulse_f1_08_sysmax_nmb7.pdf> <./chapters/hentschel/pdf/pulse_f1_08_s ysdia_nmb18.pdf> <./chapters/hentschel/pdf/pulse_f1_08_diamin1_nmb25.pdf>] [466] [467 <./chapters/hentschel/pdf/sin_sysmax_nmb2.pdf> <./chapters/hentschel/pdf/s in_sysdia_nmb4.pdf> <./chapters/hentschel/pdf/sin_diamin_nmb6.pdf>] [468 <./cha pters/hentschel/pdf/pulse_f1_08_elliptic_sysmax_nmb7.pdf> <./chapters/hentschel /pdf/pulse_f1_08_elliptic_sysdia_nmb18.pdf> <./chapters/hentschel/pdf/pulse_f1_ 08_elliptic_diamin1_nmb25.pdf> <./chapters/hentschel/pdf/pulse_f1_08_elliptic_e ccentric_sysmax_nmb7.pdf> <./chapters/hentschel/pdf/pulse_f1_08_elliptic_eccent ric_sysdia_nmb18.pdf> <./chapters/hentschel/pdf/pulse_f1_08_elliptic_eccentric_ diamin1_nmb25.pdf>]) (./tex/25.tex [469 <./chapters/hentschel/pdf/pulse_syrinx_ f1_08_syrinx05_sysmax_nmb7.pdf> <./chapters/hentschel/pdf/pulse_syrinx_f1_08_sy rinx05_sysdia_nmb18.pdf> <./chapters/hentschel/pdf/pulse_syrinx_f1_08_syrinx05_ diamin1_nmb25.pdf>] [470] Chapter 25. [471] [472 <./chapters/lopes/pdf/nazare1.p df>] [473] (./chapters/lopes/pdf/graph.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/graph.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed ) [474pdfTeX warning (ext4): destination with the same identifier (name{equation.25.3.1}) has been already used, duplicate i gnored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.290 \end{figure} ]pdfTeX warning (ext4): destination with the same identifier (name{equation.25.3.2}) has been already used, duplicate ignored \relax l.295 \begin{equation} pdfTeX warning (ext4): destination with the same identifi er (name{equation.25.3.3}) has been already used, duplicate ignored \relax l.307 \begin{equation} [475 <./chapters/lopes/pdf/graph.pdf>]pdfTeX warning (ex t4): destination with the same identifier (name{equation.25.3.1}) has been alre ady used, duplicate ignored \relax l.461 \end{align} pdfTeX warning (ext4): destination with the same identifier (name{equation.25.3.2}) has been already used, duplicate ignored \relax l.461 \end{align} Underfull \vbox (badness 2744) has occurred while \output is active [476]pdfTeX warning (ext4): destination with the same identifier (name{equation.25.3.1}) h as been already used, duplicate ignored \relax l.512 \end{align} pdfTeX warning (ext4): destination with the same identifier (n ame{equation.25.3.2}) has been already used, duplicate ignored \relax l.512 \end{align} pdfTeX warning (ext4): destination with the same identifier (n ame{equation.25.3.1}) has been already used, duplicate ignored \relax l.545 \end{align} pdfTeX warning (ext4): destination with the same identifier (n ame{equation.25.3.2}) has been already used, duplicate ignored \relax l.545 \end{align} [477]pdfTeX warning (ext4): destination with the same identif ier (name{equation.25.3.1}) has been already used, duplicate ignored \relax l.571 \end{align} pdfTeX warning (ext4): destination with the same identifier (name{equation.25.3.2}) has been already used, duplicate ignored \relax l.571 \end{align} [478] Underfull \hbox (badness 5681) in paragraph at lines 667--667 []\T1/pplx/m/n/9 (+20) Figure 25.3: |Pos-i-tive part of [479 <./chapters/lopes/pdf/phase_velocity_simple.pdf>] Overfull \hbox (0.95473pt too wide) in paragraph at lines 771--777 \T1/pplx/m/n/10 (-20) Corr and RungeKutta classes (see \T1/fvm/m/n/10 dolfwave/ src/predictorcorrector \T1/pplx/m/n/10 (-20) and \T1/fvm/m/n/10 dolfwave/src/ru ngekutta\T1/pplx/m/n/10 (-20) ). [480pdfTeX warning (ext4): destination with the same identifier (name{equation. 25.5.1}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.820 pdfTeX warning (ext4): destination with the same identifier (name{equatio n.25.5.2}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.820 ] Underfull \vbox (badness 10000) has occurred while \output is active [481] [482] [483] Underfull \vbox (badness 10000) has occurred while \output is active [484] (./chapters/lopes/pdf/spike_shelf.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/spike_shelf.pdf): PDF inclu sion: found PDF version <1.5>, but at most version <1.4> allowed ) [485] Underfull \hbox (badness 1377) in paragraph at lines 1290--1290 \T1/pplx/m/n/9 (+20) pan-els) and ZTC (lower pan-els) Underfull \hbox (badness 1377) in paragraph at lines 1305--1305 \T1/pplx/m/n/9 (+20) pan-els) and ZTC (lower pan-els) Underfull \hbox (badness 1377) in paragraph at lines 1319--1319 \T1/pplx/m/n/9 (+20) pan-els) and ZTC (lower pan-els) [486 <./chapters/lopes/pdf/spike_shelf.pdf> <./chapters/lopes/png/L2_spike_stab ility.png> <./chapters/lopes/png/L2_shelf_stability.png> <./chapters/lopes/png/ L1_spike_stability.png> <./chapters/lopes/png/L1_shelf_stability.png>] [487 <./ chapters/lopes/png/L0_5_spike_stability.png> <./chapters/lopes/png/L0_5_shelf_s tability.png> <./chapters/lopes/png/L2_dx_0_02_hm_spike_spectrum_StdPot.png> <. /chapters/lopes/png/L2_dx_0_02_hm_shelf_spectrum_StdPot.png> <./chapters/lopes/ png/L2_dx_0_02_hm_spike_spectrum_Zhao.png> <./chapters/lopes/png/L2_dx_0_02_hm_ shelf_spectrum_Zhao.png> <./chapters/lopes/png/L1_dx_0_1_hm_spike_spectrum_StdP ot.png> <./chapters/lopes/png/L1_dx_0_1_hm_shelf_spectrum_StdPot.png> <./chapte rs/lopes/png/L1_dx_0_1_hm_spike_spectrum_Zhao.png> <./chapters/lopes/png/L1_dx_ 0_1_hm_shelf_spectrum_Zhao.png>] [488 <./chapters/lopes/png/L0_5_dx_0_25_hm_spi ke_spectrum_StdPot.png> <./chapters/lopes/png/L0_5_dx_0_25_hm_shelf_spectrum_St dPot.png> <./chapters/lopes/png/L0_5_dx_0_25_hm_spike_spectrum_Zhao.png> <./cha pters/lopes/png/L0_5_dx_0_25_hm_shelf_spectrum_Zhao.png>] [489] [490] LaTeX Warning: `!h' float specifier changed to `!ht'. 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[491 <./chapters/lopes/pdf/submergedbar.pdf>] [492 <./chapters/lopes/pdf/ZhaoNw ogu.pdf> <./chapters/lopes/pdf/deptheps.pdf>] [493 <./chapters/lopes/pdf/epsilo n0_1.pdf> <./chapters/lopes/pdf/epsilon0_25.pdf>] [494 <./chapters/lopes/pdf/epsilon0_5. pdf>] [495 <./chapters/lopes/pdf/eta000000.pdf> <./chapters/lopes/pdf/eta002000 .pdf> <./chapters/lopes/pdf/eta004000.pdf> <./chapters/lopes/pdf/eta006000.pdf> <./chapters/lopes/pdf/eta007972.pdf> <./chapters/lopes/pdf/eta009946.pdf>] [496 <./chapters/lopes/pdf/unstr.pdf> <./chapters/lopes/pdf/unstrcorner.pdf>] Underfull \vbox (badness 4048) has occurred while \output is active [497 <./cha pters/lopes/pdf/detail_unstr.pdf>] (./chapters/lopes/pdf/scale_tex.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/scale_tex.pdf): PDF inclusi on: found PDF version <1.5>, but at most version <1.4> allowed ) (./chapters/lopes/pdf/sponge_tex.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/sponge_tex.pdf): PDF inclus ion: found PDF version <1.5>, but at most version <1.4> allowed ) [498 <./chapters/lopes/pdf/scale_tex.pd f> <./chapters/lopes/pdf/depth.pdf>] [499 <./chapters/lopes/pdf/sponge_tex.pdf> <./chapters/lopes/pdf/eta.pdf> <./chapters/lopes/pdf/pvel2.pdf>] [500 <./chapt ers/lopes/pdf/etaprofile.pdf> <./chapters/lopes/pdf/velprofile.pdf>] pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/depth0.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/depth6.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed [501 <./chapters/lopes/pdf/depth0.pdf> <./c hapters/lopes/pdf/depth6.pdf>] pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/eta3.pdf): PDF inclusion: f ound PDF version <1.5>, but at most version <1.4> allowed [502 <./chapters/lopes/pdf/eta1.pdf> <./chap ters/lopes/pdf/eta3.pdf> <./chapters/lopes/pdf/eta45.pdf>] pdfTeX warning: pdflatex (file ./chapters/lopes/pdf/eta6.pdf): PDF inclusion: f ound PDF version <1.5>, but at most version <1.4> allowed [503 <./chapters/lopes/pdf/eta6.pdf>]) (./tex/26.tex [504] Chapter 26. [505] Underfull \vbox (badness 10000) has occurred while \output is active [506] Underfull \vbox (badness 1917) has occurred while \output is active [507] [508] Underfull \vbox (badness 10000) has occurred while \output is active [509] Underfull \vbox (badness 10000) has occurred while \output is active [510] [511] Underfull \vbox (badness 10000) has occurred while \output is active [512] [513] [514] [515] [516] [517] Underfull \vbox (badness 3291) has occurred while \output is active [518] Underfull \vbox (badness 2181) has occurred while \output is active [519] [520] [521] Underfull \hbox (badness 1178) in paragraph at lines 1410--1410 []\T1/pplx/m/n/9 (+20) Figure 26.6: |Com-plete DOLFIN Underfull \hbox (badness 1102) in paragraph at lines 1410--1410 \T1/pplx/m/n/9 (+20) solver for the com-press-ible neo- LaTeX Warning: Float too large for page by 23.41197pt on input line 1532. [522] [523] [524] [525]) (./tex/27.tex [526] Chapter 27. [527] [528] Underfull \hbox (badness 4316) in paragraph at lines 296--296 []\T1/pplx/m/n/9 (+20) Figure 27.2: |Sam-ples of how Overfull \hbox (1.10251pt too wide) in paragraph at lines 300--306 []\T1/pplx/m/n/10 (-20) In CBC.Twist, each of the forms listed in Ta-ble [][]27 .1[][] have been im-ple-mented in the file \T1/fvm/m/n/10 kinematics.py [529 <./chapters/narayanan/images/pdf/continuumpotato.pdf>] [530] [531] Underfull \hbox (badness 1019) in paragraph at lines 449--449 \T1/pplx/m/n/9 (+20) en-ergy func-tion for a two term [532] Underfull \hbox (badness 10000) in paragraph at lines 597--597 []\T1/pplx/m/n/9 (+20) Figure 27.6: |The rel-e- Underfull \hbox (badness 10000) in paragraph at lines 597--597 \T1/pplx/m/n/9 (+20) vant sec-tion of the class Underfull \hbox (badness 10000) in paragraph at lines 597--597 \T1/fvm/m/n/9 StaticMomentumBalanceSolver\T1/pplx/m/n/9 (+20) , [533] [534] [535] [536] [537 <./chapters/nara yanan/images/png/twistedcube.png (PNG copy)>] [538] [539] [540] [541 <./chapters/n arayanan/images/png/release_000.png (PNG copy)> <./chapters/narayanan/images/pn g/release_100.png (PNG copy)> <./chapters/narayanan/images/png/release_200.png (PNG copy)> <./chapters/narayanan/images/png/release_300.png (PNG copy)> <./cha pters/narayanan/images/png/release_400.png (PNG copy)> <./chapters/narayanan/im ages/png/release_500.png (PNG copy)>] [542 <./chapters/narayanan/images/pdf/ene rgies.pdf>] ) (./tex/28.tex [543] [544 <./chapters/narayanan/images/png/dolphin_000.png (PNG copy)> <./chapters/n arayanan/images/png/dolphin_001.png (PNG copy)> <./chapters/narayanan/images/pn g/dolphin_002.png (PNG copy)> <./chapters/narayanan/images/png/dolphin_003.png (PNG copy)> <./chapters/narayanan/images/png/dolphin_004.png (PNG copy)> <./cha pters/narayanan/images/png/dolphin_005.png (PNG copy)> <./chapters/narayanan/im ages/png/dolphin_006.png (PNG copy)> <./chapters/narayanan/images/png/dolphin_0 07.png (PNG copy)> <./chapters/narayanan/images/png/dolphin_008.png (PNG copy)> ] Chapter 28. [545] [546] Underfull \vbox (badness 4899) has occurred while \output is active [547] [548 <./chapters/hoffman-1/png/fig1a.png (PNG copy)> <./chapters/hoffman-1/png/fig1b.png (PNG copy)>] [549 <./chapters/ hoffman-1/png/fig3a.png (PNG copy)> <./chapters/hoffman-1/png/fig3b.png (PNG co py)>] Underfull \vbox (badness 1024) has occurred while \output is active [550 <./cha pters/hoffman-1/png/Hoffman_fig2a.png (PNG copy)> <./chapters/hoffman-1/png/Hof fman_fig2b.png (PNG copy)> <./chapters/hoffman-1/png/Hoffman_fig2c.png (PNG cop y)> <./chapters/hoffman-1/png/Hoffman_fig2d.png (PNG copy)> <./chapters/hoffman -1/png/Hoffman_fig3a.png (PNG copy)> <./chapters/hoffman-1/png/Hoffman_fig3b.pn g (PNG copy)> <./chapters/hoffman-1/png/Hoffman_fig3c.png (PNG copy)> <./chapte rs/hoffman-1/png/Hoffman_fig3d.png (PNG copy)>] Underfull \vbox (badness 7047) has occurred while \output is active [551 <./cha pters/hoffman-1/png/Hoffman_fig5a.png (PNG copy)> <./chapters/hoffman-1/png/Hof fman_fig5b.png (PNG copy)> <./chapters/hoffman-1/png/Hoffman_fig5c.png (PNG cop y)> <./chapters/hoffman-1/png/Hoffman_fig5d.png (PNG copy)> <./chapters/hoffman -1/png/rlg_vorticity.png (PNG copy)> <./chapters/hoffman-1/png/oilfilm_back_sim .png (PNG copy)>] Underfull \hbox (badness 1584) in paragraph at lines 431--431 \T1/pplx/m/n/9 (+20) benchmark prob-lem FLUSTRUK- Underfull \hbox (badness 1783) in paragraph at lines 431--431 \T1/pplx/m/n/9 (+20) uni-formly re-fined meshes us-ing [552 <./chapters/hoffman-1/png/fsi_bench3D_displacement_aligned.pdf>] [553 <./chapters/hoffman-1/png/cube000 .png (PNG copy)> <./chapters/hoffman-1/png/cube115.png (PNG copy)> <./chapters/ hoffman-1/png/cube125.png (PNG copy)> <./chapters/hoffman-1/png/cube168.png (PN G copy)> <./chapters/hoffman-1/png/cube187.png (PNG copy)> <./chapters/hoffman- 1/png/cube405.png (PNG copy)> <./chapters/hoffman-1/png/cube550.png (PNG copy)> <./chapters/hoffman-1/png/cube649.png (PNG copy)>]) (./tex/29.tex [554] Chapter 29. [555] [556] pdfTeX warning: pdflatex (file ./chapters/selim/pdf/mapping.pdf): PDF inclusion : found PDF version <1.5>, but at most version <1.4> allowed [557 <./chapters/selim/pdf/mapping.pdf>] Underfull \vbox (badness 2512) has occurred while \output is active [558] [559 <./chapters/selim/pdf/primal.pdf>] [560] [561] Underfull \vbox (badness 10000) has occurred while \output is active [562] Underfull \vbox (badness 10000) has occurred while \output is active [563] Underfull \vbox (badness 10000) has occurred while \output is active [564] [565] Underfull \hbox (badness 3579) in paragraph at lines 929--929 []\T1/pplx/m/n/9 (+20) Figure 29.7: |A schematic pic- Underfull \hbox (badness 3354) in paragraph at lines 929--929 \T1/pplx/m/n/9 (+20) ture of the adap-tive FSI al-go- [566 <./chapters/selim/pdf/adaptive.pdf> ] [567] [568]) (./tex/30.tex [569 <./chapters/selim/p ng/new_channel.png (PNG copy)> <./chapters/selim/png/channel_test_zoom.png (PNG copy)>] [570 <./chapters/selim/png/channelZF.png (PNG copy)> <./chapters/selim /png/channelZS.png (PNG copy)> <./chapters/selim/png/channelZM.png (PNG copy)>] [571 <./chapters/selim/png/new_cavity.png> <./chapters/selim/png/zoom_cavity.pn g (PNG copy)> <./chapters/selim/pdf/plot.pdf>] [572] Chapter 30. [573] (./chapters/nikbakht/pdf/domain.pdf_tex ) [574 <./chapters/nikbakht/pdf/domain.pd f>] [575] [576] [577] [578] [579] [580] [581] [582 <./chapters/nikba kht/png/mesh.png> <./chapters/nikbakht/png/result.png>] [583]) (./tex/31.tex [584] [585] [586] Chapter 31. [587] [588 <./chapters/vynnytska/png/la yout.png>] Underfull \vbox (badness 10000) has occurred while \output is active [589] [590] [591] Underfull \vbox (badness 10000) has occurred while \output is active [592] Underfull \vbox (badness 6157) has occurred while \output is active [593] [594] Underfull \hbox (badness 2027) in paragraph at lines 766--766 \T1/pplx/m/n/8.5 main predictor--corrector al-go-rithm, Underfull \hbox (badness 1253) in paragraph at lines 766--766 \T1/pplx/m/n/8.5 ini-tial-iza-tion is not in-cluded here). LaTeX Warning: Float too large for page by 15.77048pt on input line 768. [595] [596] [597] [598] Underfull \hbox (badness 1038) in paragraph at lines 975--975 []\T1/pplx/m/n/9 (+20) Figure 31.7: |Di-men-sion-less root Overfull \hbox (1.66838pt too wide) in paragraph at lines 981--1019 [][] Overfull \hbox (1.66838pt too wide) in paragraph at lines 1025--1053 [][] [599] [600 <./chapters/vynnytska/png/u_rms.png>] [601 <./chapters/vynnytska/png /tmB.png (PNG copy)> <./chapters/vynnytska/png/visB.png (PNG copy)> <./chapters /vynnytska/png/tmC.png (PNG copy)> <./chapters/vynnytska/png/visC.png (PNG copy )> <./chapters/vynnytska/png/tmD.png (PNG copy)> <./chapters/vynnytska/png/visD .png (PNG copy)> <./chapters/vynnytska/png/tmE.png (PNG copy)> <./chapters/vynn ytska/png/visE.png (PNG copy)> <./chapters/vynnytska/png/tmF.png (PNG copy)> <. /chapters/vynnytska/png/visF.png (PNG copy)> <./chapters/vynnytska/png/tmG.png (PNG copy)> <./chapters/vynnytska/png/visG.png (PNG copy)> <./chapters/vynnytsk a/png/tmleg.png (PNG copy)> <./chapters/vynnytska/png/visleg.png (PNG copy)>] [602 <./chapters/vynnytska/png/tmH.png (PNG copy)> <./chapters/vynnytska/png/vi sH.png (PNG copy)> <./chapters/vynnytska/png/tmI.png (PNG copy)> <./chapters/vy nnytska/png/visI.png (PNG copy)> <./chapters/vynnytska/png/tmJ.png (PNG copy)> <./chapters/vynnytska/png/visJ.png (PNG copy)> <./chapters/vynnytska/png/tmK.pn g (PNG copy)> <./chapters/vynnytska/png/visK.png (PNG copy)> <./chapters/vynnyt ska/png/tmL.png (PNG copy)> <./chapters/vynnytska/png/visL.png (PNG copy)> <./c hapters/vynnytska/png/tmM.png (PNG copy)> <./chapters/vynnytska/png/visM.png (P NG copy)>]) (./tex/32.tex Chapter 32. [603] [604] Underfull \vbox (badness 1496) has occurred while \output is active [605] Underfull \vbox (badness 10000) has occurred while \output is active [606] [607] [608] [609 <./chapters/schroll/pdf/h0_typica l.pdf> <./chapters/schroll/pdf/h_typical.pdf>] [610 <./chapters/schroll/pdf/a1a 2scan4.pdf> <./chapters/schroll/pdf/a1a2scan4-5.pdf> <./chapters/schroll/pdf/b1 b2scan4.pdf> <./chapters/schroll/pdf/b1b2scan4-5.pdf> <./chapters/schroll/pdf/4 Dscan3.pdf> <./chapters/schroll/pdf/4Dscan3-5.pdf>] [611 <./chapters/schroll/pdf/4Dscan 3b.pdf> <./chapters/schroll/pdf/4Dscan3b-5.pdf> <./chapters/schroll/pdf/4Dsampl e3-5.pdf> <./chapters/schroll/pdf/4Dsample3b-5.pdf> <./chapters/schroll/pdf/4D- 1scan4b.pdf> <./chapters/schroll/pdf/4D-1scan4b-5.pdf>]) (./tex/33.tex [612] Chapter 33. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding), (hyperref) removing `math shift' on input line 23. 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[620] Package Fancyhdr Warning: \headheight is too small (12.0pt): Make it at least 12.79222pt. We now make it that large for the rest of the document. This may cause the page layout to be inconsistent, however. [621 <./chapters/hake/pdf/error_plot.pdf>] Underfull \vbox (badness 10000) has occurred while \output is active Package Fancyhdr Warning: \headheight is too small (12.0pt): Make it at least 12.79222pt. We now make it that large for the rest of the document. This may cause the page layout to be inconsistent, however. [622 <./chapters/hake/pdf/traces_mesh_1.pdf>] Package Fancyhdr Warning: \headheight is too small (12.0pt): Make it at least 12.79222pt. We now make it that large for the rest of the document. This may cause the page layout to be inconsistent, however. [623 <./chapters/hake/pdf/traces_mesh_2.pdf>] Underfull \hbox (badness 3965) in paragraph at lines 844--844 []\T1/pplx/m/n/9 (+20) Figure 33.7: |Di-a-gram for the Underfull \hbox (badness 6316) in paragraph at lines 844--844 \T1/pplx/m/n/9 (+20) time step-ping al-go-rithm us-ing Underfull \hbox (badness 3769) in paragraph at lines 844--844 \T1/pplx/m/n/9 (+20) 3 dis-crete ob-jects: \T1/fvm/m/n/9 DtExpander\T1/pplx/m/n /9 (+20) , Underfull \vbox (badness 10000) has occurred while \output is active Package Fancyhdr Warning: \headheight is too small (12.0pt): Make it at least 12.79222pt. We now make it that large for the rest of the document. This may cause the page layout to be inconsistent, however. [624 <./chapters/hake/pdf/traces_mesh_3.pdf> <./chapters/hake/pdf/timeline.pdf> ] Package Fancyhdr Warning: \headheight is too small (12.0pt): Make it at least 12.79222pt. We now make it that large for the rest of the document. This may cause the page layout to be inconsistent, however. [625] Package Fancyhdr Warning: \headheight is too small (12.0pt): Make it at least 12.79222pt. We now make it that large for the rest of the document. This may cause the page layout to be inconsistent, however. [626]) (./tex/34.tex Package Fancyhdr Warning: \headheight is too small (12.0pt): Make it at least 12.79222pt. We now make it that large for the rest of the document. This may cause the page layout to be inconsistent, however. [627] Package Fancyhdr Warning: \headheight is too small (12.0pt): Make it at least 12.79222pt. We now make it that large for the rest of the document. This may cause the page layout to be inconsistent, however. [628] Chapter 34. Underfull \vbox (badness 10000) has occurred while \output is active [629] [630] (./chapters/lezar/svg/arbitrary_waveguide_cross_section.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lezar/svg/arbitrary_waveguide_cross_s ection.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed ) [631 <./chapter s/lezar/svg/arbitrary_waveguide_cross_section.pdf>] [632] [633] (./chapters/lezar/svg/rectangular_fenics_mesh.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lezar/svg/rectangular_fenics_mesh.pdf ): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed ) [634 <./chapters/le zar/svg/rectangular_fenics_mesh.pdf>] [635] [636] (./chapters/lezar/svg/hollow_rectangular_waveguide.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lezar/svg/hollow_rectangular_waveguid e.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allow ed ) Underfull \vbox (badness 4024) has occurred while \output is active [637 <./cha pters/lezar/svg/hollow_rectangular_waveguide.pdf>] (./chapters/lezar/svg/hollow_cutoff_TE.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lezar/svg/hollow_cutoff_TE.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed ) (./chapters/lezar/svg/hollow_cutoff_TM.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lezar/svg/hollow_cutoff_TM.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed ) (./chapters/lezar/svg/hollow_rectangular_waveguide_dispersion_curve.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lezar/svg/hollow_rectangular_waveguid e_dispersion_curve.pdf): PDF inclusion: found PDF version <1.5>, but at most ve rsion <1.4> allowed ) [638 <./chapters/lezar/svg/hollow_cutoff_TE.pdf> <./chapters/lezar/svg/hollow_c utoff_TM.pdf>] (./chapters/lezar/svg/half_filled_rectangular_waveguide.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lezar/svg/half_filled_rectangular_wav eguide.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed ) (./chapters/lezar/svg/half_filled_cutoff_TE.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lezar/svg/half_filled_cutoff_TE.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed ) [639 <./chapters/lezar /svg/hollow_rectangular_waveguide_dispersion_curve.pdf> <./chapters/lezar/svg/h alf_filled_rectangular_waveguide.pdf>] (./chapters/lezar/svg/half_filled_cutoff_TM.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lezar/svg/half_filled_cutoff_TM.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed ) Underfull \hbox (badness 2698) in paragraph at lines 848--848 []\T1/pplx/m/n/9 (+20) Figure 34.9: |The fourth cal-cu- [640 <./chapters/lezar/svg/half_filled_cutoff_TE.pdf> <./chapters/lezar/svg/hal f_filled_cutoff_TM.pdf>] (./chapters/lezar/svg/half_filled_rectangular_waveguide_dispersion_curve.pdf_te x pdfTeX warning: pdflatex (file ./chapters/lezar/svg/half_filled_rectangular_wav eguide_dispersion_curve.pdf): PDF inclusion: found PDF version <1.5>, but at mo st version <1.4> allowed ) (./chapters/lezar/svg/shielded_microstrip_waveguide.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lezar/svg/shielded_microstrip_wavegui de.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allo wed ) [641 <./chapters/lezar/svg/half_filled_rectangular_waveguide_dispersion_curve.p df> <./chapters/lezar/svg/shielded_microstrip_waveguide.pdf>] (./chapters/lezar/svg/boxed_microstrip_dispersion_curves.pdf_tex pdfTeX warning: pdflatex (file ./chapters/lezar/svg/boxed_microstrip_dispersion _curves.pdf): PDF inclusion: found PDF version <1.5>, but at most version <1.4> allowed )) (./tex/35.tex [642 <./chapters/lezar/svg/boxed_microstrip_dispersion_curves.pdf>] Chapter 35. 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[655] [656] [657 <./chapters/rognes/pdf/CG.pdf> <./c hapters/rognes/pdf/RT.pdf>] [658] Underfull \vbox (badness 6188) has occurred while \output is active [659] [660] [661] [662] [663] [664] [665] [666] [667] [668]) [669] [670] (./tex/BM1.tex Underfull \vbox (badness 10000) has occurred while \output is active [671] Underfull \vbox (badness 10000) has occurred while \output is active [672] Underfull \vbox (badness 10000) has occurred while \output is active [673] Underfull \vbox (badness 10000) has occurred while \output is active [674] Underfull \vbox (badness 10000) has occurred while \output is active [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] (./book.ind [713] [714] [715] [716] [717] Overfull \hbox (7.21391pt too wide) in paragraph at lines 435--437 []\T1/pplx/m/n/10 (-20) LBB con-di-tions, \T1/pplx/m/it/10 see \T1/pplx/m/n/10 (-20) Ladyzhenskaya--BabuČka--Brezzi [718] [719] [720])) Package caption Warning: Unused \captionsetup[subalgorithm] on input line 14. (./book.aux) LaTeX Font Warning: Size substitutions with differences (Font) up to 0.43996pt have occurred. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Hfootnote.38} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.37} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.36} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.35} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.34} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.33} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.32} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.31} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.30} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.29} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.28} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.27} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.26} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.25} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.24} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.23} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.22} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.21} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.20} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.19} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.18} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.17} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.16} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.15} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.14} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.13} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.12} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.11} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.10} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.9} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.8} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.7} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.6} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.5} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.4} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.3} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.2} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Hfootnote.1} has been referenced but does not exist , replaced by a fixed one {/usr/share/texmf-texlive/fonts/enc/dvips/base/8r.enc} Output written on book.pdf (732 pages, 66379724 bytes). Transcript written on book.log. make: Leaving directory `/usr/src/RPM/BUILD/fenics-book-20130430' + exit 0 Processing files: fenics-book-20130430-alt1 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.78082 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd fenics-book-20130430 + DOCDIR=/usr/src/tmp/fenics-book-buildroot/usr/share/doc/fenics-book-20130430 + export DOCDIR + rm -rf /usr/src/tmp/fenics-book-buildroot/usr/share/doc/fenics-book-20130430 + /bin/mkdir -p /usr/src/tmp/fenics-book-buildroot/usr/share/doc/fenics-book-20130430 + cp -prL book.pdf /usr/src/tmp/fenics-book-buildroot/usr/share/doc/fenics-book-20130430 + chmod -R go-w /usr/src/tmp/fenics-book-buildroot/usr/share/doc/fenics-book-20130430 + chmod -R a+rX /usr/src/tmp/fenics-book-buildroot/usr/share/doc/fenics-book-20130430 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.0HRvi2 find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.PPac8O find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) Wrote: /usr/src/RPM/RPMS/noarch/fenics-book-20130430-alt1.noarch.rpm 152.54user 1.69system 2:39.69elapsed 96%CPU (0avgtext+0avgdata 85424maxresident)k 0inputs+0outputs (0major+78321minor)pagefaults 0swaps 220.74user 8.72system 4:23.36elapsed 87%CPU (0avgtext+0avgdata 143032maxresident)k 0inputs+0outputs (0major+1146750minor)pagefaults 0swaps