<86>Apr 21 07:47:52 userdel[88572]: delete user 'rooter' <86>Apr 21 07:47:53 groupadd[88677]: group added to /etc/group: name=rooter, GID=675 <86>Apr 21 07:47:53 groupadd[88677]: group added to /etc/gshadow: name=rooter <86>Apr 21 07:47:53 groupadd[88677]: new group: name=rooter, GID=675 <86>Apr 21 07:47:53 useradd[88708]: new user: name=rooter, UID=675, GID=675, home=/root, shell=/bin/bash <86>Apr 21 07:47:53 userdel[88734]: delete user 'builder' <86>Apr 21 07:47:53 userdel[88734]: removed group 'builder' owned by 'builder' <86>Apr 21 07:47:53 userdel[88734]: removed shadow group 'builder' owned by 'builder' <86>Apr 21 07:47:53 groupadd[88750]: group added to /etc/group: name=builder, GID=676 <86>Apr 21 07:47:53 groupadd[88750]: group added to /etc/gshadow: name=builder <86>Apr 21 07:47:53 groupadd[88750]: new group: name=builder, GID=676 <86>Apr 21 07:47:53 useradd[88761]: new user: name=builder, UID=676, GID=676, home=/usr/src, shell=/bin/bash <13>Apr 21 07:47:55 rpmi: xorg-xproto-devel-7.0.31-alt0.M80P.1 p8+226471.100.1.1 1554301566 installed <13>Apr 21 07:47:55 rpmi: xorg-xextproto-devel-2:7.3.0-alt1 1389258977 installed <13>Apr 21 07:47:55 rpmi: libXau-1.0.8-alt1 1369565808 installed <13>Apr 21 07:47:55 rpmi: libCVector-1.0.3.1-alt2 1316809891 installed <13>Apr 21 07:47:55 rpmi: libquadmath0-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553689025 installed <13>Apr 21 07:47:55 rpmi: libgfortran3-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553689025 installed <13>Apr 21 07:47:55 rpmi: libCBFlib-0.9.2.3-alt2 1316809777 installed <13>Apr 21 07:47:55 rpmi: libquadmath5-devel-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553689025 installed <13>Apr 21 07:47:55 rpmi: libCVector-devel-1.0.3.1-alt2 1316809891 installed <13>Apr 21 07:47:55 rpmi: libNearTree-3.1.1-alt1 1335098321 installed <13>Apr 21 07:47:55 rpmi: libXau-devel-1.0.8-alt1 1369565808 installed <13>Apr 21 07:47:55 rpmi: xorg-fixesproto-devel-1:5.0-alt1 1300091058 installed <13>Apr 21 07:47:55 rpmi: gcc-fortran-common-1.4.20-alt1 1432315196 installed <13>Apr 21 07:47:55 rpmi: xorg-inputproto-devel-1:2.3-alt1 1362636518 installed <13>Apr 21 07:47:55 rpmi: libX11-locales-3:1.6.3-alt1 1431956885 installed <13>Apr 21 07:47:55 rpmi: xorg-kbproto-devel-1.0.6-alt1 1332531929 installed <13>Apr 21 07:47:55 rpmi: libXdmcp-1.1.1-alt1 1334617701 installed <13>Apr 21 07:47:55 rpmi: libxcb-1.12-alt2 p8.218219.300 1545313365 installed <13>Apr 21 07:47:55 rpmi: libX11-3:1.6.3-alt1 1431956885 installed <13>Apr 21 07:47:55 rpmi: libXext-1.3.3-alt1 1409902959 installed <13>Apr 21 07:47:55 rpmi: libXi-1.7.9-alt1.M80P.1 1515766152 installed <13>Apr 21 07:47:55 rpmi: libXfixes-5.0.1-alt1 1369809608 installed <13>Apr 21 07:47:57 rpmi: libxcb-devel-1.12-alt2 p8.218219.300 1545313365 installed <13>Apr 21 07:47:57 rpmi: libX11-devel-3:1.6.3-alt1 1431956885 installed <13>Apr 21 07:47:57 rpmi: libXext-devel-1.3.3-alt1 1409902959 installed <13>Apr 21 07:47:57 rpmi: libXfixes-devel-5.0.1-alt1 1369809608 installed <13>Apr 21 07:47:57 rpmi: libCQRlib-1.1.2-alt2 1316809838 installed <13>Apr 21 07:47:57 rpmi: imake-1.0.7-alt2 1401895768 installed <13>Apr 21 07:47:57 rpmi: libCBFlib-devel-0.9.2.3-alt2 1316809777 installed <13>Apr 21 07:47:57 rpmi: libCQRlib-devel-1.1.2-alt2 1316809838 installed <13>Apr 21 07:47:57 rpmi: libNearTree-devel-3.1.1-alt1 1335098321 installed <13>Apr 21 07:47:57 rpmi: libXi-devel-1.7.9-alt1.M80P.1 1515766152 installed <13>Apr 21 07:47:57 rpmi: xorg-cf-files-1.0.6-alt1 1453137637 installed <13>Apr 21 07:47:57 rpmi: libgfortran5-devel-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553689025 installed Installing RasMol-2.7.5.2-alt3.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.68101 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf RasMol-2.7.5.2 + echo 'Source #0 (rasmol-2.7.5.2-13May11.tar.gz):' Source #0 (rasmol-2.7.5.2-13May11.tar.gz): + /bin/gzip -dc /usr/src/RPM/SOURCES/rasmol-2.7.5.2-13May11.tar.gz + /bin/tar -xf - + cd RasMol-2.7.5.2 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #0 (RasMol-2.7.5-gentoo-bundled-lib.patch):' Patch #0 (RasMol-2.7.5-gentoo-bundled-lib.patch): + /usr/bin/patch -p1 patching file src/Imakefile patching file src/Makefile.in + sed -i 's,^#include \(<\|"\)cbf,#include \1cbf/cbf,' src/cif.h src/maps.c + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.52925 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd RasMol-2.7.5.2 + CFLAGS='-pipe -Wall -g -O2 -march=i586 -mtune=generic' + pushd src ~/RPM/BUILD/RasMol-2.7.5.2/src ~/RPM/BUILD/RasMol-2.7.5.2 + xmkmf imake -DUseInstalled -I/usr/share/X11/config In file included from /usr/share/X11/config/Imake.tmpl:2145:0, from Imakefile.c:34: /usr/share/X11/config/X11.rules:39:0: warning: "XBinDir" redefined # define XBinDir $(XPROJECTROOT)/bin ^ In file included from /usr/share/X11/config/site.def:155:0, from /usr/share/X11/config/Imake.tmpl:116, from Imakefile.c:34: /usr/share/X11/config/host.def:14:0: note: this is the location of the previous definition #define XBinDir /usr/bin ^ In file included from /usr/share/X11/config/Imake.tmpl:2145:0, from Imakefile.c:34: /usr/share/X11/config/X11.rules:47:0: warning: "XUsrLibDirPath" redefined # define XUsrLibDirPath $(USRLIBDIR):$(XPROJECTROOT)/lib ^ In file included from /usr/share/X11/config/site.def:155:0, from /usr/share/X11/config/Imake.tmpl:116, from Imakefile.c:34: /usr/share/X11/config/host.def:16:0: note: this is the location of the previous definition #define XUsrLibDirPath /usr/lib ^ + subst s/-mcpu=i686/-mtune=i686/ Makefile + make clean rasmol DEPTHDEF=-DEIGHTBIT make: Entering directory `/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c In file included from /usr/include/stdlib.h:24:0, from rasmol.c:203: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ rasmol.c:1170:15: warning: 'DetermineRasMolPath' defined but not used [-Wunused-function] static size_t DetermineRasMolPath( char * rpath, size_t maxlen) { ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from molecule.c:220: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ molecule.c: In function 'CreateSurfaceBonds': molecule.c:2152:27: warning: variable 'dz' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^ molecule.c:2152:23: warning: variable 'dy' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^ molecule.c:2152:19: warning: variable 'dx' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^ molecule.c: At top level: molecule.c:1722:13: warning: 'TestSurface' defined but not used [-Wunused-function] static void TestSurface( RAtom __far *sptr, RAtom __far *dptr ) ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from abstree.c:81: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from cmndline.c:82: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from command.c:91: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ command.c: In function 'Find_Symbol_Definition': command.c:1072:18: warning: variable 'prevsymbol' set but not used [-Wunused-but-set-variable] Symbol __far * prevsymbol; ^ command.c: In function 'PlayMovieFrame': command.c:1493:8: warning: variable 'checkfile' set but not used [-Wunused-but-set-variable] int checkfile; ^ command.c: In function 'ReadAtomSelection': command.c:4279:4: warning: value computed is not used [-Wunused-value] *TokenPtr--; ^ command.c:4296:6: warning: value computed is not used [-Wunused-value] *TokenPtr--; ^ command.c:4337:13: warning: value computed is not used [-Wunused-value] *TokenPtr++; ^ command.c: In function 'ApplyMapAtomSelection': command.c:4752:12: warning: unused variable 'visits' [-Wunused-variable] size_t visits; ^ command.c: At top level: command.c:902:12: warning: 'Define_Symbol' defined but not used [-Wunused-function] static int Define_Symbol(const char __far * string, const char __far * definition) { ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from transfor.c:198: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ transfor.c: In function 'ColourPointAttrib': transfor.c:2282:33: warning: variable 'result' set but not used [-Wunused-but-set-variable] register int i,shade,nshade,result; ^ transfor.c: In function 'ScaleColourMap': transfor.c:1702:17: warning: array subscript is above array bounds [-Warray-bounds] { ScaleRef[i].r = 0; ^ transfor.c:1703:17: warning: array subscript is above array bounds [-Warray-bounds] ScaleRef[i].g = 0; ^ transfor.c:1704:17: warning: array subscript is above array bounds [-Warray-bounds] ScaleRef[i].b = 255; ^ transfor.c:1705:17: warning: array subscript is above array bounds [-Warray-bounds] ScaleRef[i].shade = 0; ^ transfor.c:1706:17: warning: array subscript is above array bounds [-Warray-bounds] ScaleRef[i].col = 0; ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from render.c:189: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from repres.c:234: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from pixutils.c:183: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ pixutils.c: In function 'ClipDashLine': pixutils.c:645:23: warning: variable 'ca' set but not used [-Wunused-but-set-variable] register Pixel c, ca, mid; ^ pixutils.c: In function 'DrawCircle': pixutils.c:2606:6: warning: variable 'updown' set but not used [-Wunused-but-set-variable] int updown, ifirst; ^ pixutils.c: In function 'DrawCylinderCaps': pixutils.c:2986:21: warning: variable 'alts' set but not used [-Wunused-but-set-variable] register int p, alts, altc; ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from outfile.c:170: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ outfile.c: In function 'WriteVectDots': outfile.c:1998:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] register int temp, tump; ^ outfile.c:1998:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] register int temp, tump; ^ outfile.c: In function 'WriteVectMapPoints': outfile.c:2038:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] register int temp, tump; ^ outfile.c:2038:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] register int temp, tump; ^ outfile.c: In function 'R3DSphere': outfile.c:2601:24: warning: variable 'z1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^ outfile.c:2601:20: warning: variable 'y1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^ outfile.c:2601:16: warning: variable 'x1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^ outfile.c: In function 'R3DStrandRibbon': outfile.c:2956:28: warning: variable 'qsz' set but not used [-Wunused-but-set-variable] register int qsx, qsy, qsz; ^ outfile.c: At top level: outfile.c:2082:13: warning: 'WriteVectMapBonds' defined but not used [-Wunused-function] static void WriteVectMapBonds( void) { ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from script.c:164: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ script.c:2342:13: warning: 'WriteVRMLLine' defined but not used [-Wunused-function] static void WriteVRMLLine( int src, int dst, int shade, int *flag ) ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from infile.c:196: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ infile.c: In function 'LoadCIFMolecule': infile.c:3232:13: warning: variable 'oNMRModel' set but not used [-Wunused-but-set-variable] int oNMRModel; ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c In file included from /usr/include/string.h:25:0, from tokens.c:194: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from cif_fract.c:197: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif.o cif.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from cif.c:278: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_ctonum.o cif_ctonum.c cif_ctonum.c:198:0: warning: "_USE_RASMOL_H_" redefined #define _USE_RASMOL_H_ ^ :0:0: note: this is the location of the previous definition In file included from /usr/include/math.h:26:0, from rasmol.h:163, from cif_ctonum.c:200: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_stx.o cif_stx.c In file included from /usr/include/stdio.h:27:0, from cif_stx.c:227: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o multiple.o multiple.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from multiple.c:225: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o vector.o vector.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from vector.c:159: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o wbrotate.o wbrotate.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from wbrotate.c:201: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/stdio.h:27:0, from langsel_unix.c:114: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o maps.o maps.c In file included from /usr/include/stdio.h:27:0, from maps.c:81: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ maps.c: In function 'SaveMapFile': maps.c:429:55: warning: variable 'fcmapmask_zbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^ maps.c:429:36: warning: variable 'fcmapmask_ybase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^ maps.c:429:16: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^ maps.c:428:48: warning: variable 'fcmap_zbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^ maps.c:428:32: warning: variable 'fcmap_ybase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^ maps.c:428:16: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^ maps.c: In function 'LoadCBFMapFile': maps.c:1758:12: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase, fcmapmask_ybase, fcmapmask_zbase; ^ maps.c:1757:12: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase, fcmap_ybase, fcmap_zbase; ^ maps.c:1756:12: warning: variable 'ocmapmask_xbase' set but not used [-Wunused-but-set-variable] double ocmapmask_xbase, ocmapmask_ybase, ocmapmask_zbase; ^ maps.c:1755:12: warning: variable 'ocmap_xbase' set but not used [-Wunused-but-set-variable] double ocmap_xbase, ocmap_ybase, ocmap_zbase; ^ maps.c:1754:12: warning: variable 'mapmask_xbase' set but not used [-Wunused-but-set-variable] Long mapmask_xbase, mapmask_ybase, mapmask_zbase; ^ maps.c:1753:12: warning: variable 'map_xbase' set but not used [-Wunused-but-set-variable] Long map_xbase, map_ybase, map_zbase; ^ maps.c: In function 'LoadCCP4MapFile': maps.c:2988:9: warning: variable 'rawelsize' set but not used [-Wunused-but-set-variable] int rawelsize; ^ In file included from maps.c:96:0: maps.c: In function 'map_points': maps.c:4575:42: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] MapPointm2o(map,mp,gradient); ^ maps.h:187:10: note: in definition of macro 'MapPointm2o' if (gradient) { \ ^ maps.c:4598:44: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] MapPointm2o(map,mp,gradient); ^ maps.h:187:10: note: in definition of macro 'MapPointm2o' if (gradient) { \ ^ maps.c:4399:12: warning: variable 'koffsets' set but not used [-Wunused-but-set-variable] Long koffsets[3][2]; /* The offsets back to the prior cells */ ^ maps.c:4398:11: warning: variable 'odirs' set but not used [-Wunused-but-set-variable] int odirs[3][2]; /* {Y,Z}, {Z,X}, {X,Y} */ ^ maps.c:4396:39: warning: variable 'havebody' set but not used [-Wunused-but-set-variable] int haveedges[3], havefaces[3], havebody; ^ maps.c: In function 'SaveMapFile': maps.c:394:51: warning: 'mapinfo' may be used uninitialized in this function [-Wmaybe-uninitialized] cbf_failnez (cbf_set_value(cbf,mapinfo->MapFile)) ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o x11win.o x11win.c In file included from /usr/include/stdlib.h:24:0, from x11win.c:232: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ rm -f rasmol gcc -m32 -o rasmol -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -L/usr/lib -L/usr/lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -lcbf -lCQRlib -lCVector -lCNearTree -lgfortran make: Leaving directory `/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' + mv rasmol rasmol-8bpp + make clean rasmol DEPTHDEF=-DSIXTEENBIT make: Entering directory `/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c In file included from /usr/include/stdlib.h:24:0, from rasmol.c:203: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ rasmol.c:1170:15: warning: 'DetermineRasMolPath' defined but not used [-Wunused-function] static size_t DetermineRasMolPath( char * rpath, size_t maxlen) { ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from molecule.c:220: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ molecule.c: In function 'CreateSurfaceBonds': molecule.c:2152:27: warning: variable 'dz' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^ molecule.c:2152:23: warning: variable 'dy' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^ molecule.c:2152:19: warning: variable 'dx' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^ molecule.c: At top level: molecule.c:1722:13: warning: 'TestSurface' defined but not used [-Wunused-function] static void TestSurface( RAtom __far *sptr, RAtom __far *dptr ) ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from abstree.c:81: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from cmndline.c:82: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from command.c:91: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ command.c: In function 'Find_Symbol_Definition': command.c:1072:18: warning: variable 'prevsymbol' set but not used [-Wunused-but-set-variable] Symbol __far * prevsymbol; ^ command.c: In function 'PlayMovieFrame': command.c:1493:8: warning: variable 'checkfile' set but not used [-Wunused-but-set-variable] int checkfile; ^ command.c: In function 'ReadAtomSelection': command.c:4279:4: warning: value computed is not used [-Wunused-value] *TokenPtr--; ^ command.c:4296:6: warning: value computed is not used [-Wunused-value] *TokenPtr--; ^ command.c:4337:13: warning: value computed is not used [-Wunused-value] *TokenPtr++; ^ command.c: In function 'ApplyMapAtomSelection': command.c:4752:12: warning: unused variable 'visits' [-Wunused-variable] size_t visits; ^ command.c: At top level: command.c:902:12: warning: 'Define_Symbol' defined but not used [-Wunused-function] static int Define_Symbol(const char __far * string, const char __far * definition) { ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from transfor.c:198: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ transfor.c: In function 'ColourPointAttrib': transfor.c:2282:33: warning: variable 'result' set but not used [-Wunused-but-set-variable] register int i,shade,nshade,result; ^ transfor.c: In function 'ScaleColourMap': transfor.c:1702:17: warning: array subscript is above array bounds [-Warray-bounds] { ScaleRef[i].r = 0; ^ transfor.c:1703:17: warning: array subscript is above array bounds [-Warray-bounds] ScaleRef[i].g = 0; ^ transfor.c:1704:17: warning: array subscript is above array bounds [-Warray-bounds] ScaleRef[i].b = 255; ^ transfor.c:1705:17: warning: array subscript is above array bounds [-Warray-bounds] ScaleRef[i].shade = 0; ^ transfor.c:1706:17: warning: array subscript is above array bounds [-Warray-bounds] ScaleRef[i].col = 0; ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from render.c:189: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from repres.c:234: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from pixutils.c:183: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ pixutils.c: In function 'ClipDashLine': pixutils.c:645:23: warning: variable 'ca' set but not used [-Wunused-but-set-variable] register Pixel c, ca, mid; ^ pixutils.c: In function 'DrawCircle': pixutils.c:2606:6: warning: variable 'updown' set but not used [-Wunused-but-set-variable] int updown, ifirst; ^ pixutils.c: In function 'DrawCylinderCaps': pixutils.c:2986:21: warning: variable 'alts' set but not used [-Wunused-but-set-variable] register int p, alts, altc; ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from outfile.c:170: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ outfile.c: In function 'WriteVectDots': outfile.c:1998:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] register int temp, tump; ^ outfile.c:1998:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] register int temp, tump; ^ outfile.c: In function 'WriteVectMapPoints': outfile.c:2038:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] register int temp, tump; ^ outfile.c:2038:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] register int temp, tump; ^ outfile.c: In function 'R3DSphere': outfile.c:2601:24: warning: variable 'z1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^ outfile.c:2601:20: warning: variable 'y1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^ outfile.c:2601:16: warning: variable 'x1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^ outfile.c: In function 'R3DStrandRibbon': outfile.c:2956:28: warning: variable 'qsz' set but not used [-Wunused-but-set-variable] register int qsx, qsy, qsz; ^ outfile.c: At top level: outfile.c:2082:13: warning: 'WriteVectMapBonds' defined but not used [-Wunused-function] static void WriteVectMapBonds( void) { ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from script.c:164: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ script.c:2342:13: warning: 'WriteVRMLLine' defined but not used [-Wunused-function] static void WriteVRMLLine( int src, int dst, int shade, int *flag ) ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from infile.c:196: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ infile.c: In function 'LoadCIFMolecule': infile.c:3232:13: warning: variable 'oNMRModel' set but not used [-Wunused-but-set-variable] int oNMRModel; ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c In file included from /usr/include/string.h:25:0, from tokens.c:194: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from cif_fract.c:197: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif.o cif.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from cif.c:278: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_ctonum.o cif_ctonum.c cif_ctonum.c:198:0: warning: "_USE_RASMOL_H_" redefined #define _USE_RASMOL_H_ ^ :0:0: note: this is the location of the previous definition In file included from /usr/include/math.h:26:0, from rasmol.h:163, from cif_ctonum.c:200: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_stx.o cif_stx.c In file included from /usr/include/stdio.h:27:0, from cif_stx.c:227: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o multiple.o multiple.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from multiple.c:225: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o vector.o vector.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from vector.c:159: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o wbrotate.o wbrotate.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from wbrotate.c:201: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/stdio.h:27:0, from langsel_unix.c:114: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o maps.o maps.c In file included from /usr/include/stdio.h:27:0, from maps.c:81: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ maps.c: In function 'SaveMapFile': maps.c:429:55: warning: variable 'fcmapmask_zbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^ maps.c:429:36: warning: variable 'fcmapmask_ybase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^ maps.c:429:16: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^ maps.c:428:48: warning: variable 'fcmap_zbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^ maps.c:428:32: warning: variable 'fcmap_ybase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^ maps.c:428:16: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^ maps.c: In function 'LoadCBFMapFile': maps.c:1758:12: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase, fcmapmask_ybase, fcmapmask_zbase; ^ maps.c:1757:12: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase, fcmap_ybase, fcmap_zbase; ^ maps.c:1756:12: warning: variable 'ocmapmask_xbase' set but not used [-Wunused-but-set-variable] double ocmapmask_xbase, ocmapmask_ybase, ocmapmask_zbase; ^ maps.c:1755:12: warning: variable 'ocmap_xbase' set but not used [-Wunused-but-set-variable] double ocmap_xbase, ocmap_ybase, ocmap_zbase; ^ maps.c:1754:12: warning: variable 'mapmask_xbase' set but not used [-Wunused-but-set-variable] Long mapmask_xbase, mapmask_ybase, mapmask_zbase; ^ maps.c:1753:12: warning: variable 'map_xbase' set but not used [-Wunused-but-set-variable] Long map_xbase, map_ybase, map_zbase; ^ maps.c: In function 'LoadCCP4MapFile': maps.c:2988:9: warning: variable 'rawelsize' set but not used [-Wunused-but-set-variable] int rawelsize; ^ In file included from maps.c:96:0: maps.c: In function 'map_points': maps.c:4575:42: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] MapPointm2o(map,mp,gradient); ^ maps.h:187:10: note: in definition of macro 'MapPointm2o' if (gradient) { \ ^ maps.c:4598:44: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] MapPointm2o(map,mp,gradient); ^ maps.h:187:10: note: in definition of macro 'MapPointm2o' if (gradient) { \ ^ maps.c:4399:12: warning: variable 'koffsets' set but not used [-Wunused-but-set-variable] Long koffsets[3][2]; /* The offsets back to the prior cells */ ^ maps.c:4398:11: warning: variable 'odirs' set but not used [-Wunused-but-set-variable] int odirs[3][2]; /* {Y,Z}, {Z,X}, {X,Y} */ ^ maps.c:4396:39: warning: variable 'havebody' set but not used [-Wunused-but-set-variable] int haveedges[3], havefaces[3], havebody; ^ maps.c: In function 'SaveMapFile': maps.c:394:51: warning: 'mapinfo' may be used uninitialized in this function [-Wmaybe-uninitialized] cbf_failnez (cbf_set_value(cbf,mapinfo->MapFile)) ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o x11win.o x11win.c In file included from /usr/include/stdlib.h:24:0, from x11win.c:232: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ rm -f rasmol gcc -m32 -o rasmol -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -L/usr/lib -L/usr/lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -lcbf -lCQRlib -lCVector -lCNearTree -lgfortran make: Leaving directory `/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' + mv rasmol rasmol-16bpp + make clean rasmol DEPTHDEF=-DTHIRTYTWOBIT make: Entering directory `/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c In file included from /usr/include/stdlib.h:24:0, from rasmol.c:203: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ rasmol.c:1170:15: warning: 'DetermineRasMolPath' defined but not used [-Wunused-function] static size_t DetermineRasMolPath( char * rpath, size_t maxlen) { ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from molecule.c:220: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ molecule.c: In function 'CreateSurfaceBonds': molecule.c:2152:27: warning: variable 'dz' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^ molecule.c:2152:23: warning: variable 'dy' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^ molecule.c:2152:19: warning: variable 'dx' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^ molecule.c: At top level: molecule.c:1722:13: warning: 'TestSurface' defined but not used [-Wunused-function] static void TestSurface( RAtom __far *sptr, RAtom __far *dptr ) ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from abstree.c:81: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from cmndline.c:82: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from command.c:91: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ command.c: In function 'Find_Symbol_Definition': command.c:1072:18: warning: variable 'prevsymbol' set but not used [-Wunused-but-set-variable] Symbol __far * prevsymbol; ^ command.c: In function 'PlayMovieFrame': command.c:1493:8: warning: variable 'checkfile' set but not used [-Wunused-but-set-variable] int checkfile; ^ command.c: In function 'ReadAtomSelection': command.c:4279:4: warning: value computed is not used [-Wunused-value] *TokenPtr--; ^ command.c:4296:6: warning: value computed is not used [-Wunused-value] *TokenPtr--; ^ command.c:4337:13: warning: value computed is not used [-Wunused-value] *TokenPtr++; ^ command.c: In function 'ApplyMapAtomSelection': command.c:4752:12: warning: unused variable 'visits' [-Wunused-variable] size_t visits; ^ command.c: At top level: command.c:902:12: warning: 'Define_Symbol' defined but not used [-Wunused-function] static int Define_Symbol(const char __far * string, const char __far * definition) { ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from transfor.c:198: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ transfor.c: In function 'ColourPointAttrib': transfor.c:2282:33: warning: variable 'result' set but not used [-Wunused-but-set-variable] register int i,shade,nshade,result; ^ transfor.c: In function 'ScaleColourMap': transfor.c:1702:17: warning: array subscript is above array bounds [-Warray-bounds] { ScaleRef[i].r = 0; ^ transfor.c:1703:17: warning: array subscript is above array bounds [-Warray-bounds] ScaleRef[i].g = 0; ^ transfor.c:1704:17: warning: array subscript is above array bounds [-Warray-bounds] ScaleRef[i].b = 255; ^ transfor.c:1705:17: warning: array subscript is above array bounds [-Warray-bounds] ScaleRef[i].shade = 0; ^ transfor.c:1706:17: warning: array subscript is above array bounds [-Warray-bounds] ScaleRef[i].col = 0; ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from render.c:189: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from repres.c:234: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from pixutils.c:183: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ pixutils.c: In function 'ClipDashLine': pixutils.c:645:23: warning: variable 'ca' set but not used [-Wunused-but-set-variable] register Pixel c, ca, mid; ^ pixutils.c: In function 'DrawCircle': pixutils.c:2606:6: warning: variable 'updown' set but not used [-Wunused-but-set-variable] int updown, ifirst; ^ pixutils.c: In function 'DrawCylinderCaps': pixutils.c:2986:21: warning: variable 'alts' set but not used [-Wunused-but-set-variable] register int p, alts, altc; ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from outfile.c:170: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ outfile.c: In function 'WriteVectDots': outfile.c:1998:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] register int temp, tump; ^ outfile.c:1998:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] register int temp, tump; ^ outfile.c: In function 'WriteVectMapPoints': outfile.c:2038:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] register int temp, tump; ^ outfile.c:2038:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] register int temp, tump; ^ outfile.c: In function 'R3DSphere': outfile.c:2601:24: warning: variable 'z1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^ outfile.c:2601:20: warning: variable 'y1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^ outfile.c:2601:16: warning: variable 'x1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^ outfile.c: In function 'R3DStrandRibbon': outfile.c:2956:28: warning: variable 'qsz' set but not used [-Wunused-but-set-variable] register int qsx, qsy, qsz; ^ outfile.c: At top level: outfile.c:2082:13: warning: 'WriteVectMapBonds' defined but not used [-Wunused-function] static void WriteVectMapBonds( void) { ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from script.c:164: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ script.c:2342:13: warning: 'WriteVRMLLine' defined but not used [-Wunused-function] static void WriteVRMLLine( int src, int dst, int shade, int *flag ) ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from infile.c:196: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ infile.c: In function 'LoadCIFMolecule': infile.c:3232:13: warning: variable 'oNMRModel' set but not used [-Wunused-but-set-variable] int oNMRModel; ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c In file included from /usr/include/string.h:25:0, from tokens.c:194: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from cif_fract.c:197: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif.o cif.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from cif.c:278: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_ctonum.o cif_ctonum.c cif_ctonum.c:198:0: warning: "_USE_RASMOL_H_" redefined #define _USE_RASMOL_H_ ^ :0:0: note: this is the location of the previous definition In file included from /usr/include/math.h:26:0, from rasmol.h:163, from cif_ctonum.c:200: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_stx.o cif_stx.c In file included from /usr/include/stdio.h:27:0, from cif_stx.c:227: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o multiple.o multiple.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from multiple.c:225: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o vector.o vector.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from vector.c:159: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o wbrotate.o wbrotate.c In file included from /usr/include/math.h:26:0, from rasmol.h:163, from wbrotate.c:201: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/stdio.h:27:0, from langsel_unix.c:114: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o maps.o maps.c In file included from /usr/include/stdio.h:27:0, from maps.c:81: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ maps.c: In function 'SaveMapFile': maps.c:429:55: warning: variable 'fcmapmask_zbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^ maps.c:429:36: warning: variable 'fcmapmask_ybase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^ maps.c:429:16: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^ maps.c:428:48: warning: variable 'fcmap_zbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^ maps.c:428:32: warning: variable 'fcmap_ybase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^ maps.c:428:16: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^ maps.c: In function 'LoadCBFMapFile': maps.c:1758:12: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase, fcmapmask_ybase, fcmapmask_zbase; ^ maps.c:1757:12: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase, fcmap_ybase, fcmap_zbase; ^ maps.c:1756:12: warning: variable 'ocmapmask_xbase' set but not used [-Wunused-but-set-variable] double ocmapmask_xbase, ocmapmask_ybase, ocmapmask_zbase; ^ maps.c:1755:12: warning: variable 'ocmap_xbase' set but not used [-Wunused-but-set-variable] double ocmap_xbase, ocmap_ybase, ocmap_zbase; ^ maps.c:1754:12: warning: variable 'mapmask_xbase' set but not used [-Wunused-but-set-variable] Long mapmask_xbase, mapmask_ybase, mapmask_zbase; ^ maps.c:1753:12: warning: variable 'map_xbase' set but not used [-Wunused-but-set-variable] Long map_xbase, map_ybase, map_zbase; ^ maps.c: In function 'LoadCCP4MapFile': maps.c:2988:9: warning: variable 'rawelsize' set but not used [-Wunused-but-set-variable] int rawelsize; ^ In file included from maps.c:96:0: maps.c: In function 'map_points': maps.c:4575:42: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] MapPointm2o(map,mp,gradient); ^ maps.h:187:10: note: in definition of macro 'MapPointm2o' if (gradient) { \ ^ maps.c:4598:44: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] MapPointm2o(map,mp,gradient); ^ maps.h:187:10: note: in definition of macro 'MapPointm2o' if (gradient) { \ ^ maps.c:4399:12: warning: variable 'koffsets' set but not used [-Wunused-but-set-variable] Long koffsets[3][2]; /* The offsets back to the prior cells */ ^ maps.c:4398:11: warning: variable 'odirs' set but not used [-Wunused-but-set-variable] int odirs[3][2]; /* {Y,Z}, {Z,X}, {X,Y} */ ^ maps.c:4396:39: warning: variable 'havebody' set but not used [-Wunused-but-set-variable] int haveedges[3], havefaces[3], havebody; ^ maps.c: In function 'SaveMapFile': maps.c:394:51: warning: 'mapinfo' may be used uninitialized in this function [-Wmaybe-uninitialized] cbf_failnez (cbf_set_value(cbf,mapinfo->MapFile)) ^ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o x11win.o x11win.c In file included from /usr/include/stdlib.h:24:0, from x11win.c:232: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ rm -f rasmol gcc -m32 -o rasmol -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -L/usr/lib -L/usr/lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -lcbf -lCQRlib -lCVector -lCNearTree -lgfortran make: Leaving directory `/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' + mv rasmol rasmol-32bpp + popd ~/RPM/BUILD/RasMol-2.7.5.2 + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.77238 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/RasMol-buildroot + : + /bin/rm -rf -- /usr/src/tmp/RasMol-buildroot + cd RasMol-2.7.5.2 + find -type f -name .DS_Store -execdir rm '{}' + + install -pDm755 /usr/src/RPM/SOURCES/rasmol.sh /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol + install -pm755 src/rasmol-8bpp /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol-8bpp + install -pm755 src/rasmol-16bpp /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol-16bpp + install -pm755 src/rasmol-32bpp /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol-32bpp + mkdir -p /usr/src/tmp/RasMol-buildroot/usr/share/RasMol /usr/src/tmp/RasMol-buildroot/usr/share/man/man1/ + install -pm644 doc/rasmol.1.gz /usr/src/tmp/RasMol-buildroot/usr/share/man/man1/rasmol.1.gz + install -pm644 doc/rasmol.hlp /usr/src/tmp/RasMol-buildroot/usr/share/RasMol/rasmol.hlp + install -pm644 doc/rasmol.html /usr/src/tmp/RasMol-buildroot/usr/share/RasMol/rasmol.html + pushd doc ~/RPM/BUILD/RasMol-2.7.5.2/doc ~/RPM/BUILD/RasMol-2.7.5.2 + rm rasmol.hlp rasmol.html rasmol.1.gz + mkdir doc + install -pm644 INSTALL.html NOTICE.html README.html esrasmol27.html esrasmol2721.html index.html manualA4.pdf.gz manualUS.pdf.gz refcardA4.pdf.gz refcardUS.pdf.gz manualA4.ps.gz manualUS.ps.gz refcardA4.ps.gz refcardUS.ps.gz manualA4.rtf.gz manualUS.rtf.gz raswin.rtf.gz refcardA4.rtf.gz refcardUS.rtf.gz rasmol.doc.gz doc/ + mkdir examples + popd ~/RPM/BUILD/RasMol-2.7.5.2 + mv data/1crn.pdb data/1gpd.pdb.gz data/1ldb.pdb.gz data/1ldm.pdb.gz data/3cro.pdb data/4hir.ent.gz data/4ins.CIF data/7lyz.pdb data/IUCR9800028.cif data/RSML_fixup.csh data/asprin.alc data/pdb2mcg.ent doc/examples/ + install -pDm644 /usr/src/RPM/SOURCES/rasmol.xpm /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/32x32/apps/rasmol.xpm + install -pDm644 /usr/src/RPM/SOURCES/rasmol_16x14.png /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/16x16/apps/rasmol.png + install -pDm644 /usr/src/RPM/SOURCES/rasmol_32x29.png /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/32x32/apps/rasmol.png + install -pDm644 /usr/src/RPM/SOURCES/rasmol_64x58.png /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/64x64/apps/rasmol.png + install -pDm644 /usr/src/RPM/SOURCES/rasmol.desktop /usr/src/tmp/RasMol-buildroot/usr/share/applications/RasMol.desktop + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/RasMol-buildroot (auto) Verifying and fixing files in /usr/src/tmp/RasMol-buildroot (binconfig,pkgconfig,libtool,desktop) Compressing files in /usr/src/tmp/RasMol-buildroot (auto) Verifying ELF objects in /usr/src/tmp/RasMol-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) Hardlinking identical .pyc and .pyo files Processing files: RasMol-2.7.5.2-alt3 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.90775 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd RasMol-2.7.5.2 + DOCDIR=/usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + export DOCDIR + rm -rf /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + /bin/mkdir -p /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + cp -prL doc/ /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R go-w /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R a+rX /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + cp -prL NOTICE PROJECTS RASLIC README.html README.shtml README.txt INSTALL INSTALL.html TODO.html TODO.txt ChangeLog ChangeLog.html ChangeLog.txt history.html /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R go-w /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R a+rX /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.S7QQkj find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.7zVL2v find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) Provides: rasmol = 2.7.5.2-alt3 Requires: fonts-bitmap-75dpi, xdpyinfo, /bin/sh, /lib/ld-linux.so.2, libCNearTree.so.5 >= set:jfy8eX61ZJ5rZ4xDtOoY3Ofm, libCQRlib.so.2 >= set:jhBWnjL0, libCVector-1.0.3.so.2 >= set:hfsOoCd, libX11.so.6 >= set:ohc6fbkxsesVSZD9TAWJZxFUMYKZF7XZFHoAwZoYIZ2TYjO5aoG8X4Ct9JQyRnIXmV2F0aHbK2ZEIMkiMh7yzkXHE6SFl6Ha4Znpd3lnVtPcXGZBdges21HaRZJR0gURRPSLYLM70RcAA80Vgr3LUciiZbdtHCjMHh3JmZsZmA0wfU8Z8CaFM9ckOPvlJQeQ8HE5AmdIcwyk5PhmNA2U1e, libXext.so.6 >= set:li6tHmY7qME5J7, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.15), libc.so.6(GLIBC_2.2), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libc.so.6(GLIBC_2.7), libcbf.so.0 >= set:nhij0GYBa6O0x4WIjboz5OU4ATPkFBqBcbzYg8P0ecxUzu3yNivD0dJUmrTQFZ7ZKL0g0Njm3mBpemz9qh1jta3BdIxPLMksDf0UwsKp15JkFisAQRQfEn, libm.so.6(GLIBC_2.0), libm.so.6(GLIBC_2.1), rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.6cnYlP Creating RasMol-debuginfo package Processing files: RasMol-debuginfo-2.7.5.2-alt3 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.uK23Rf find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.dAsvmR find-requires: running scripts (debuginfo) Requires: RasMol = 2.7.5.2-alt3, /usr/lib/debug/lib/ld-linux.so.2.debug, debug(libCNearTree.so.5), debug(libCQRlib.so.2), debug(libCVector-1.0.3.so.2), debug(libX11.so.6), debug(libXext.so.6), debug(libc.so.6), debug(libcbf.so.0), debug(libm.so.6) Wrote: /usr/src/RPM/RPMS/i586/RasMol-2.7.5.2-alt3.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/RasMol-debuginfo-2.7.5.2-alt3.i586.rpm 67.32user 2.63system 1:47.15elapsed 65%CPU (0avgtext+0avgdata 71520maxresident)k 0inputs+0outputs (0major+1014183minor)pagefaults 0swaps 71.71user 4.77system 1:54.42elapsed 66%CPU (0avgtext+0avgdata 122396maxresident)k 2368inputs+0outputs (0major+1239638minor)pagefaults 0swaps --- RasMol-2.7.5.2-alt3.i586.rpm.repo 2012-04-22 12:57:16.000000000 +0000 +++ RasMol-2.7.5.2-alt3.i586.rpm.hasher 2019-04-21 07:49:46.068140072 +0000 @@ -122,3 +122,3 @@ /usr/share/icons/hicolor/64x64/apps/rasmol.png 100644 -/usr/share/man/man1/rasmol.1.bz2 100644 +/usr/share/man/man1/rasmol.1.xz 100644 Requires: fonts-bitmap-75dpi @@ -135,2 +135,3 @@ Requires: libc.so.6(GLIBC_2.1) +Requires: libc.so.6(GLIBC_2.15) Requires: libc.so.6(GLIBC_2.2) @@ -139,2 +140,3 @@ Requires: libc.so.6(GLIBC_2.4) +Requires: libc.so.6(GLIBC_2.7) Requires: libcbf.so.0 >= set:nhij0GYBa6O0x4WIjboz5OU4ATPkFBqBcbzYg8P0ecxUzu3yNivD0dJUmrTQFZ7ZKL0g0Njm3mBpemz9qh1jta3BdIxPLMksDf0UwsKp15JkFisAQRQfEn --- RasMol-debuginfo-2.7.5.2-alt3.i586.rpm.repo 2012-04-22 12:57:16.000000000 +0000 +++ RasMol-debuginfo-2.7.5.2-alt3.i586.rpm.hasher 2019-04-21 07:49:46.095139778 +0000 @@ -11,3 +11,5 @@ /usr/src/debug/RasMol-2.7.5.2/src/cif_ctonum.c 100644 +/usr/src/debug/RasMol-2.7.5.2/src/cif_ctonum.h 100644 /usr/src/debug/RasMol-2.7.5.2/src/cif_fract.c 100644 +/usr/src/debug/RasMol-2.7.5.2/src/cif_fract.h 100644 /usr/src/debug/RasMol-2.7.5.2/src/cmndline.c 100644 @@ -19,2 +21,3 @@ /usr/src/debug/RasMol-2.7.5.2/src/infile.c 100644 +/usr/src/debug/RasMol-2.7.5.2/src/infile.h 100644 /usr/src/debug/RasMol-2.7.5.2/src/langsel.h 100644 @@ -40,2 +43,3 @@ /usr/src/debug/RasMol-2.7.5.2/src/tokens.c 100644 +/usr/src/debug/RasMol-2.7.5.2/src/tokens.h 100644 /usr/src/debug/RasMol-2.7.5.2/src/transfor.c 100644 @@ -43,2 +47,3 @@ /usr/src/debug/RasMol-2.7.5.2/src/vector.c 100644 +/usr/src/debug/RasMol-2.7.5.2/src/vector.h 100644 /usr/src/debug/RasMol-2.7.5.2/src/wbrotate.c 100644