<86>Jun 16 01:52:34 userdel[2854576]: delete user 'rooter' <86>Jun 16 01:52:34 userdel[2854576]: removed group 'rooter' owned by 'rooter' <86>Jun 16 01:52:34 userdel[2854576]: removed shadow group 'rooter' owned by 'rooter' <86>Jun 16 01:52:34 groupadd[2854588]: group added to /etc/group: name=rooter, GID=1811 <86>Jun 16 01:52:34 groupadd[2854588]: group added to /etc/gshadow: name=rooter <86>Jun 16 01:52:34 groupadd[2854588]: new group: name=rooter, GID=1811 <86>Jun 16 01:52:34 useradd[2854599]: new user: name=rooter, UID=1811, GID=1811, home=/root, shell=/bin/bash <86>Jun 16 01:52:34 userdel[2854610]: delete user 'builder' <86>Jun 16 01:52:34 userdel[2854610]: removed group 'builder' owned by 'builder' <86>Jun 16 01:52:34 userdel[2854610]: removed shadow group 'builder' owned by 'builder' <86>Jun 16 01:52:34 groupadd[2854635]: group added to /etc/group: name=builder, GID=1812 <86>Jun 16 01:52:34 groupadd[2854635]: group added to /etc/gshadow: name=builder <86>Jun 16 01:52:34 groupadd[2854635]: new group: name=builder, GID=1812 <86>Jun 16 01:52:34 useradd[2854643]: new user: name=builder, UID=1812, GID=1812, home=/usr/src, shell=/bin/bash warning: user user does not exist - using root warning: group user does not exist - using root warning: user user does not exist - using root warning: group user does not exist - using root warning: user user does not exist - using root warning: group user does not exist - using root warning: user user does not exist - using root warning: group user does not exist - using root <13>Jun 16 01:52:37 rpmi: xorg-proto-devel-2021.5-alt1 p10+295526.40.6.1 1646400646 installed <13>Jun 16 01:52:37 rpmi: libglvnd-7:1.6.0-alt1 p10+308277.140.4.1 1671274291 installed <13>Jun 16 01:52:37 rpmi: libexpat-2.5.0-alt1 p10+324220.100.1.1 1688465137 installed <13>Jun 16 01:52:37 rpmi: libpng16-1.6.37-alt1 sisyphus+275734.100.2.1 1624788826 installed <13>Jun 16 01:52:37 rpmi: libjpeg-2:2.1.5.1-alt1.p10.2 p10+347367.100.3.1 1715149001 installed <13>Jun 16 01:52:37 rpmi: libXau-1.0.9-alt1 sisyphus+278247.100.1.1 1626080736 installed <13>Jun 16 01:52:37 rpmi: libwayland-server-1.22.0-alt1.1 p10+332446.100.1.1 1697975867 installed <13>Jun 16 01:52:38 rpmi: libicu69-1:6.9.1-alt2 sisyphus+277632.100.1.1 1625726150 installed <13>Jun 16 01:52:38 rpmi: libgraphite2-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605111 installed <13>Jun 16 01:52:38 rpmi: xml-utils-1:2.9.12-alt1.p10.1 p10+314068.100.3.1 1675354348 installed <13>Jun 16 01:52:38 rpmi: rpm-build-gir-0.7.3-alt3 sisyphus+242150.100.1.1 1575312005 installed <13>Jun 16 01:52:38 rpmi: libgraphite2-devel-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605111 installed <13>Jun 16 01:52:38 rpmi: icu-utils-1:6.9.1-alt2 sisyphus+277632.100.1.1 1625726150 installed <13>Jun 16 01:52:38 rpmi: libicu-devel-1:6.9.1-alt2 sisyphus+277632.100.1.1 1625726150 installed <13>Jun 16 01:52:38 rpmi: libXau-devel-1.0.9-alt1 sisyphus+278247.100.1.1 1626080736 installed <13>Jun 16 01:52:38 rpmi: libGLES-7:1.6.0-alt1 p10+308277.140.4.1 1671274291 installed <13>Jun 16 01:52:38 rpmi: libOpenGL-7:1.6.0-alt1 p10+308277.140.4.1 1671274291 installed <13>Jun 16 01:52:38 rpmi: zlib-devel-1.2.13-alt1 p10+318109.100.2.1 1682690580 installed <13>Jun 16 01:52:38 rpmi: libncurses-6.3.20220618-alt1 p10+319472.100.4.1 1685092691 installed <13>Jun 16 01:52:38 rpmi: libtinfo-devel-6.3.20220618-alt1 p10+319472.100.4.1 1685092691 installed <13>Jun 16 01:52:38 rpmi: libncurses-devel-6.3.20220618-alt1 p10+319472.100.4.1 1685092691 installed <13>Jun 16 01:52:38 rpmi: libxshmfence-1.3-alt1 sisyphus+278248.100.1.1 1626080762 installed <13>Jun 16 01:52:38 rpmi: libX11-locales-3:1.8.7-alt1 p10+330924.200.2.1 1697304232 installed <13>Jun 16 01:52:38 rpmi: libXdmcp-1.1.3-alt1 sisyphus+278816.100.1.1 1626219231 installed <13>Jun 16 01:52:38 rpmi: libxcb-1.14-alt1 sisyphus+277968.100.1.3 1625952322 installed <13>Jun 16 01:52:38 rpmi: libX11-3:1.8.7-alt1 p10+330924.200.2.1 1697304232 installed <13>Jun 16 01:52:38 rpmi: libXext-1.3.4-alt1 sisyphus+278817.100.1.3 1626262596 installed <13>Jun 16 01:52:38 rpmi: libXfixes-5.0.3-alt1 sisyphus+275326.100.2.2 1624573638 installed <13>Jun 16 01:52:38 rpmi: libXrender-0.9.10-alt1 sisyphus+278480.100.1.2 1626227740 installed <13>Jun 16 01:52:38 rpmi: libXcursor-1.2.0-alt1 sisyphus+278256.100.1.2 1626134578 installed <13>Jun 16 01:52:38 rpmi: libXinerama-1.1.4-alt1 sisyphus+275328.100.2.2 1624575558 installed <13>Jun 16 01:52:38 rpmi: libXxf86vm-1.1.4-alt2 sisyphus+275334.100.2.2 1624577011 installed <13>Jun 16 01:52:39 rpmi: libxcb-devel-1.14-alt1 sisyphus+277968.100.1.3 1625952322 installed <13>Jun 16 01:52:39 rpmi: libX11-devel-3:1.8.7-alt1 p10+330924.200.2.1 1697304232 installed <13>Jun 16 01:52:39 rpmi: libXrender-devel-0.9.10-alt1 sisyphus+278480.100.1.2 1626227740 installed <13>Jun 16 01:52:39 rpmi: libwayland-client-1.22.0-alt1.1 p10+332446.100.1.1 1697975867 installed <13>Jun 16 01:52:39 rpmi: libpciaccess-1:0.17-alt1 p10+321839.100.2.1 1686299452 installed <13>Jun 16 01:52:39 rpmi: libdrm-1:2.4.118-alt1 p10+336491.100.3.1 1703318945 installed <13>Jun 16 01:52:39 rpmi: libGLX-mesa-4:23.1.9-alt2 p10+336018.100.3.1 1703319968 installed <13>Jun 16 01:52:39 rpmi: libGLX-7:1.6.0-alt1 p10+308277.140.4.1 1671274291 installed <13>Jun 16 01:52:39 rpmi: libGL-7:1.6.0-alt1 p10+308277.140.4.1 1671274291 installed <13>Jun 16 01:52:39 rpmi: libGLU-4:9.0.1-alt1 sisyphus+278350.100.1.2 1626174382 installed <13>Jun 16 01:52:39 rpmi: libgbm-4:23.1.9-alt2 p10+336018.100.3.1 1703319968 installed <13>Jun 16 01:52:40 rpmi: libEGL-mesa-4:23.1.9-alt2 p10+336018.100.3.1 1703319968 installed <13>Jun 16 01:52:40 rpmi: libEGL-7:1.6.0-alt1 p10+308277.140.4.1 1671274291 installed <13>Jun 16 01:52:40 rpmi: libglvnd-devel-7:1.6.0-alt1 p10+308277.140.4.1 1671274291 installed <13>Jun 16 01:52:40 rpmi: libGLU-devel-4:9.0.1-alt1 sisyphus+278350.100.1.2 1626174382 installed <13>Jun 16 01:52:40 rpmi: gcc-c++-common-1.4.27-alt1 sisyphus+278099.1300.1.1 1626028636 installed <13>Jun 16 01:52:40 rpmi: libstdc++10-devel-10.3.1-alt2 sisyphus+277353.100.2.1 1625525890 installed <13>Jun 16 01:52:40 rpmi: gcc10-c++-10.3.1-alt2 sisyphus+277353.100.2.1 1625525890 installed <13>Jun 16 01:52:40 rpmi: libbrotlicommon-1.0.9-alt2 sisyphus+278430.100.1.2 1626213212 installed <13>Jun 16 01:52:40 rpmi: libbrotlidec-1.0.9-alt2 sisyphus+278430.100.1.2 1626213212 installed <13>Jun 16 01:52:40 rpmi: libharfbuzz-5.3.1-alt1 p10+311526.40.12.1 1678459109 installed <13>Jun 16 01:52:40 rpmi: libfreetype-2.11.0-alt1 p10+281745.100.1.1 1628002271 installed <13>Jun 16 01:52:40 rpmi: libfontconfig1-2.14.2-alt8 p10+328445.100.1.1 1693560956 installed <13>Jun 16 01:52:40 rpmi: libXft-2.3.3-alt1 sisyphus+278258.100.1.2 1626135708 installed <13>Jun 16 01:52:40 rpmi: libfltk13-1.3.5-alt0.1.rc1 sisyphus+276244.100.1.2 1624925688 installed <13>Jun 16 01:52:40 rpmi: fontconfig-2.14.2-alt8 p10+328445.100.1.1 1693560956 installed Updating fonts cache: <29>Jun 16 01:52:41 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Jun 16 01:52:41 rpmi: libharfbuzz-icu-5.3.1-alt1 p10+311526.40.12.1 1678459109 installed <13>Jun 16 01:52:41 rpmi: libharfbuzz-gobject-5.3.1-alt1 p10+311526.40.12.1 1678459109 installed <13>Jun 16 01:52:41 rpmi: libgdbm-1.8.3-alt10 sisyphus+278100.1600.1.1 1626058413 installed <13>Jun 16 01:52:41 rpmi: libp11-kit-0.24.1-alt1 p10+305061.100.3.1 1660573397 installed <13>Jun 16 01:52:41 rpmi: libtasn1-4.19.0-alt1 p10+309071.100.2.1 1668522760 installed <13>Jun 16 01:52:41 rpmi: rpm-macros-alternatives-0.5.2-alt1 p10+309129.100.2.1 1668066636 installed <13>Jun 16 01:52:41 rpmi: alternatives-0.5.2-alt1 p10+309129.100.2.1 1668066636 installed <13>Jun 16 01:52:41 rpmi: ca-certificates-2022.09.15-alt1 p10+308004.100.2.1 1665748370 installed <13>Jun 16 01:52:41 rpmi: ca-trust-0.1.6-alt1 p10+344774.100.1.1 1712685728 installed <13>Jun 16 01:52:41 rpmi: p11-kit-trust-0.24.1-alt1 p10+305061.100.3.1 1660573397 installed <13>Jun 16 01:52:42 rpmi: libcrypto1.1-1.1.1w-alt0.p10.1 p10+330586.100.4.1 1697560982 installed <13>Jun 16 01:52:42 rpmi: libssl1.1-1.1.1w-alt0.p10.1 p10+330586.100.4.1 1697560982 installed <13>Jun 16 01:52:42 rpmi: python3-3.9.18-alt1 p10+340781.400.5.1 1709555259 installed <13>Jun 16 01:52:42 rpmi: python3-base-3.9.18-alt1 p10+340781.400.5.1 1709555259 installed <13>Jun 16 01:52:42 rpmi: glib2-devel-2.68.4-alt4 p10+296885.100.1.1 1647705736 installed <13>Jun 16 01:52:42 rpmi: libfreetype-devel-2.11.0-alt1 p10+281745.100.1.1 1628002271 installed <13>Jun 16 01:52:42 rpmi: libharfbuzz-devel-5.3.1-alt1 p10+311526.40.12.1 1678459109 installed <13>Jun 16 01:52:42 rpmi: fontconfig-devel-2.14.2-alt8 p10+328445.100.1.1 1693560956 installed <13>Jun 16 01:52:43 rpmi: libpython3-3.9.18-alt1 p10+340781.400.5.1 1709555259 installed <13>Jun 16 01:52:43 rpmi: tests-for-installed-python3-pkgs-0.1.22-alt1 p10+325520.200.7.1 1691156214 installed <13>Jun 16 01:52:43 rpmi: rpm-build-python3-0.1.22-alt1 p10+325520.200.7.1 1691156214 installed <13>Jun 16 01:52:44 rpmi: python3-dev-3.9.18-alt1 p10+340781.400.5.1 1709555259 installed <13>Jun 16 01:52:44 rpmi: libXft-devel-2.3.3-alt1 sisyphus+278258.100.1.2 1626135708 installed <13>Jun 16 01:52:44 rpmi: libfltk-devel-1.3.5-alt0.1.rc1 sisyphus+276244.100.1.2 1624925688 installed <13>Jun 16 01:52:44 rpmi: gcc-c++-10-alt1 sisyphus+263054.200.3.1 1607517515 installed <13>Jun 16 01:52:44 rpmi: libXcursor-devel-1.2.0-alt1 sisyphus+278256.100.1.2 1626134578 installed <13>Jun 16 01:52:44 rpmi: libXext-devel-1.3.4-alt1 sisyphus+278817.100.1.3 1626262596 installed <13>Jun 16 01:52:44 rpmi: libXfixes-devel-5.0.3-alt1 sisyphus+275326.100.2.2 1624573638 installed <13>Jun 16 01:52:44 rpmi: libXinerama-devel-1.1.4-alt1 sisyphus+275328.100.2.2 1624575558 installed <13>Jun 16 01:52:44 rpmi: libpng-devel-1.6.37-alt1 sisyphus+275734.100.2.1 1624788826 installed <13>Jun 16 01:52:44 rpmi: libjpeg-devel-2:2.1.5.1-alt1.p10.2 p10+347367.100.3.1 1715149001 installed Building target platforms: x86_64 Building for target x86_64 Wrote: /usr/src/in/nosrpm/seaview-5.0.4-alt1.nosrc.rpm (w1.gzdio) Installing seaview-5.0.4-alt1.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.8619 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf seaview + echo 'Source #0 (seaview-5.0.4.tar.gz):' Source #0 (seaview-5.0.4.tar.gz): + /bin/gzip -dc /usr/src/RPM/SOURCES/seaview-5.0.4.tar.gz + /bin/tar -xf - + cd seaview + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #0 (seaview-chris.patch):' Patch #0 (seaview-chris.patch): + /usr/bin/patch -p1 -b --suffix .chris patching file csrc/dnapars.c patching file csrc/phylip.c patching file csrc/phylip.h patching file csrc/protpars.c patching file Makefile + chmod -x addbootstrap.cxx align.cxx comlines.cxx concatenate.cxx custom.cxx least_squares_brl.cxx load_seq.cxx nexus.cxx pdf_or_ps.cxx pseudoterminal.cxx racnuc_fetch.cxx regions.cxx resource.cxx seaview.cxx statistics.cxx svg.cxx tbe.cxx threads.cxx treedraw.cxx treerecs_draw.cxx trees.cxx unrooted.cxx use_mase_files.cxx viewasprots.cxx win32_extras.cxx xfmatpt.cxx + chmod -x csrc/bionj.c csrc/dnapars.c csrc/lwl.c csrc/md5.c csrc/misc_acnuc.c csrc/parser.c csrc/parser.h csrc/phylip.c csrc/phylip.h csrc/phyml_util.c csrc/phyml_util.h csrc/protpars.c csrc/raa_acnuc.c csrc/raa_acnuc.h csrc/seq.c csrc/seq.h csrc/zsockr.c + sed -i 's|^\(CFLAGS.*\)|\1 -g -DFL_LIBRARY|' Makefile + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.8619 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd seaview + make -j16 make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF resource.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF concatenate.cxx concatenate.cxx: In function 'void concatenate(SEA_VIEW*, SEA_VIEW*, bool, bool, bool)': concatenate.cxx:113:25: warning: 'gaps' may be used uninitialized in this function [-Wmaybe-uninitialized] 113 | add_seq_to_align(target, source->seqname[i], gaps, target_length, no_gui); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concatenate.cxx:123:32: warning: 'found' may be used uninitialized in this function [-Wmaybe-uninitialized] 123 | if (want_addgaps) found[j] = TRUE; | ^ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF viewasprots.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF comlines.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF racnuc_fetch.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF load_seq.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pseudoterminal.cxx pseudoterminal.cxx: In function 'int run_external_prog_in_pseudoterm(char*, const char*, const char*)': pseudoterminal.cxx:342:24: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 342 | freopen( (dialogfname ? dialogfname : slavename), "r", stdin); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pseudoterminal.cxx:343:10: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 343 | freopen(slavename, "a", stderr); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF statistics.cxx statistics.cxx: In function 'void geni_act(SEA_VIEW*)': statistics.cxx:596:14: warning: 'compgroupall' may be used uninitialized in this function [-Wmaybe-uninitialized] 596 | sprintf(p, "\n\nGroup %d : %.1f%%", i+1, compgroupall[i]); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ statistics.cxx:366:43: warning: 'compgroup' may be used uninitialized in this function [-Wmaybe-uninitialized] 366 | double **comp, *compall, compcomp[4], **compgroup, *compgroupall, min[4], max[4]; | ^~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pdf_or_ps.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF threads.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF custom.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF least_squares_brl.cxx least_squares_brl.cxx: In function 'int tree_btos(int**, int, double*, double*, double*, char**, noeud2**)': least_squares_brl.cxx:374:27: warning: 'tax2' may be used uninitialized in this function [-Wmaybe-uninitialized] 374 | p2 = bottomnode(arbre_s[tax2]); | ^~~~ least_squares_brl.cxx:373:27: warning: 'tax1' may be used uninitialized in this function [-Wmaybe-uninitialized] 373 | p1 = bottomnode(arbre_s[tax1]); | ^~~~ least_squares_brl.cxx:349:3: warning: 'sommebi' may be used uninitialized in this function [-Wmaybe-uninitialized] 349 | if (sommebi == 2) { | ^~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF regions.cxx regions.cxx: In function 'void save_active_region(SEA_VIEW*)': regions.cxx:502:10: warning: variable 'taille' set but not used [-Wunused-but-set-variable] 502 | int tmp, taille; | ^~~~~~ regions.cxx: In function 'int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)': regions.cxx:313:9: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 313 | system(cmd); | ~~~~~~^~~~~ regions.cxx:291:26: warning: '%s' directive writing up to 4095 bytes into a region of size 496 [-Wformat-overflow=] 291 | sprintf(cmd, "\"%s\" \"%s\" -p=s -t=%c", q, fname, view->protein?'p':'d'); | ^~ ~~~~~ In file included from /usr/include/stdio.h:866, from seaview.h:3, from regions.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output 16 or more bytes (assuming 4111) into a destination of size 500 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regions.cxx:343:35: warning: 'last' may be used uninitialized in this function [-Wmaybe-uninitialized] 343 | memmove(cmd, last, l + 1 - (last - cmd)); | ~~~~~^~~~~ regions.cxx: In function 'const char* site_mask_creation_dialog(SEA_VIEW*, position_mask*)': regions.cxx:745:10: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized] 745 | return retval; | ^~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -Dunix -Icsrc csrc/parser.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF svg.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -Dunix -Icsrc csrc/zsockr.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -Dunix -Icsrc csrc/md5.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF addbootstrap.cxx addbootstrap.cxx: In function 'char* compute_consensus_tree(char**, int**, int)': addbootstrap.cxx:895:7: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] 895 | if (k < height) { // columns were not all identical, try columns on 0-side of branch i | ^~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF align.cxx align.cxx: In function 'void replace_stars(char*)': align.cxx:1302:7: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1302 | fread(all, 1, l, in); | ~~~~~^~~~~~~~~~~~~~~ align.cxx: In function 'void edit_align_callback(Fl_Widget*, void*)': align.cxx:944:30: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 944 | sprintf(resname, "msa_name_%d", view->alignment_algorithm + 1); | ^ In file included from /usr/include/stdio.h:866, from seaview.h:3, from align.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 11 and 21 bytes into a destination of size 20 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align.cxx:991:32: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from seaview.h:3, from align.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align.cxx: In function 'void align_opt_callback(Fl_Widget*, long int)': align.cxx:991:32: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from seaview.h:3, from align.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align.cxx:973:17: warning: '%d' directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=] 973 | sprintf(tmp, "%d", reponse); | ^~ align.cxx:973:16: note: directive argument in the range [0, 2147483647] 973 | sprintf(tmp, "%d", reponse); | ^~~~ In file included from /usr/include/stdio.h:866, from seaview.h:3, from align.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 5 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align.cxx: In function 'void delete_align_callback(Fl_Widget*, void*)': align.cxx:825:31: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 825 | sprintf(msa_name, "msa_name_%d", view->alignment_algorithm + 1); | ^ In file included from /usr/include/stdio.h:866, from seaview.h:3, from align.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 11 and 21 bytes into a destination of size 20 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align.cxx:835:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 835 | sprintf(msa_name, "msa_name_%d", num + 1); | ^ In file included from /usr/include/stdio.h:866, from seaview.h:3, from align.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 11 and 21 bytes into a destination of size 20 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align.cxx:840:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 840 | sprintf(msa_name, "msa_args_%d", num + 1); | ^ In file included from /usr/include/stdio.h:866, from seaview.h:3, from align.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 11 and 21 bytes into a destination of size 20 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align.cxx:991:32: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ align.cxx:991:18: note: directive argument in the range [-2147483646, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from seaview.h:3, from align.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align.cxx:991:32: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from seaview.h:3, from align.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align.cxx: In function 'char* calc_msa_command(SEA_VIEW*, char*, void (*)(const char*, ...))': align.cxx:991:32: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from seaview.h:3, from align.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align.cxx: In function 'void cre_align_menu(SEA_VIEW*)': align.cxx:991:32: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from seaview.h:3, from align.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align.cxx: In function 'char* get_algo_opts(int, char**)': align.cxx:991:32: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from seaview.h:3, from align.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align.cxx: In function 'char* get_opt_resname(int)': align.cxx:991:32: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from seaview.h:3, from align.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align.cxx: In function 'int save_fasta_file_no_gaponly(char*, char**, int, int*, int*)': align.cxx:1345:28: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 1345 | sprintf(seqname[num], "S_%d", num); | ^~ align.cxx:1345:25: note: directive argument in the range [0, 2147483646] 1345 | sprintf(seqname[num], "S_%d", num); | ^~~~~~ In file included from /usr/include/stdio.h:866, from seaview.h:3, from align.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 4 and 13 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align.cxx: In function 'void unalign(SEA_VIEW*)': align.cxx:1415:56: warning: 'calc_color_function' may be used uninitialized in this function [-Wmaybe-uninitialized] 1415 | view->col_rank[num][i] = (char)calc_color_function( res ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ align.cxx: In function 'int replace_align_part(SEA_VIEW*, int, int, char*, int, int, int*, align_choice, const char**)': align.cxx:425:74: warning: 'calc_color_function' may be used uninitialized in this function [-Wmaybe-uninitialized] 425 | if (view->col_rank) view->col_rank[num][i] = (char)calc_color_function( res ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ align.cxx: In function 'void profile_align(SEA_VIEW*)': align.cxx:1281:62: warning: 'calc_color_function' may be used uninitialized in this function [-Wmaybe-uninitialized] 1281 | view->col_rank[table[num]][i] = (char)calc_color_function( res ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ align.cxx: In function 'int command_line_align(int, char**)': align.cxx:1507:37: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1); | ^~ align.cxx:1507:23: note: directive argument in the range [-2147483647, 2147483647] 1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from seaview.h:3, from align.cxx:1: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF nexus.cxx nexus.cxx: In function 'char** process_taxa_taxlabels(FILE*, int)': nexus.cxx:357:17: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized] 357 | if(p != NULL && *p != ';') skip_command(in); | ^~ nexus.cxx: In function 'list_segments* build_list_pairs(FILE*, int)': nexus.cxx:440:28: warning: 'next' may be used uninitialized in this function [-Wmaybe-uninitialized] 440 | debut = next->debut; fin = next->fin; | ~~~~^~~~~~~~~~~ nexus.cxx: In function 'char** process_block_characters(FILE*, int*, char***, int*, int*)': nexus.cxx:682:37: warning: 'gap' may be used uninitialized in this function [-Wmaybe-uninitialized] 682 | seqs = process_chars_m_interleave(in, *nsites, gap, | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 683 | *pntaxa, *taxnames, FALSE, matchchar, missing, *protein); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF xfmatpt.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF tbe.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -Dunix -Icsrc csrc/misc_acnuc.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF unrooted.cxx unrooted.cxx: In function 'hit try_angle_draw(float, int*, int*, float*, int, int, int, int)': unrooted.cxx:635:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 635 | if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4; | ^~ unrooted.cxx:635:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 635 | if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4; | ^~ unrooted.cxx:636:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 636 | if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4; | ^~ unrooted.cxx:636:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 636 | if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4; | ^~ unrooted.cxx:637:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 637 | if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4; | ^~ unrooted.cxx:637:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 637 | if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4; | ^~ unrooted.cxx:638:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 638 | if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4; | ^~ unrooted.cxx:638:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 638 | if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4; | ^~ unrooted.cxx: In function 'int set_angles_noeuds(bignoeud*, bignoeud*, double, double*, double)': unrooted.cxx:1122:66: warning: 'poids2' may be used uninitialized in this function [-Wmaybe-uninitialized] 1122 | debut->position.angle = (poids1*angle1 + poids2*angle2)/(poids1+poids2); | ~~~~~~~^~~~~~~~ unrooted.cxx:1122:66: warning: 'poids1' may be used uninitialized in this function [-Wmaybe-uninitialized] unrooted.cxx:1129:9: warning: 'poids' may be used uninitialized in this function [-Wmaybe-uninitialized] 1129 | return poids; | ^~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -Dunix -Icsrc csrc/bionj.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -Dunix -Icsrc csrc/phyml_util.c csrc/phyml_util.c: In function 'Warn_And_Exit': csrc/phyml_util.c:47:2: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 47 | fscanf(stdin,"%c",&c); | ^~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -Dunix -Icsrc csrc/lwl.c csrc/lwl.c: In function 'prefastlwl': csrc/lwl.c:412:1: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 412 | else | ^~~~ csrc/lwl.c:414:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 414 | aa[9] = 14;/* agc S */ | ^~ csrc/lwl.c:417:1: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 417 | else | ^~~~ csrc/lwl.c:419:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 419 | aa[11] = 14;/* agt S */ | ^~ csrc/lwl.c:422:1: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 422 | else | ^~~~ csrc/lwl.c:424:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 424 | aa[13] = 7;/* atc I */ | ^~ csrc/lwl.c:469:1: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 469 | else | ^~~~ csrc/lwl.c:471:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 471 | aa[57] = 10;/* tgc */ | ^~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF use_mase_files.cxx use_mase_files.cxx: In function 'int read_mase_seqs_header(const char*, char***, char***, char***, char**, char**)': use_mase_files.cxx:215:2: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 215 | while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0; | ^~~~~ use_mase_files.cxx:215:62: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 215 | while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0; | ^~~~ use_mase_files.cxx: In function 'int read_clustal_align(const char*, char***, char***, char***, char**, char**)': use_mase_files.cxx:623:3: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 623 | while(*p==' ') p--; *(p+1)=0; | ^~~~~ use_mase_files.cxx:623:23: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 623 | while(*p==' ') p--; *(p+1)=0; | ^ use_mase_files.cxx: In function 'int read_mase_seqs_header(const char*, char***, char***, char***, char**, char**)': use_mase_files.cxx:171:11: warning: 'lpre' may be used uninitialized in this function [-Wmaybe-uninitialized] 171 | memcpy(p, header, lpre); | ~~~~~~^~~~~~~~~~~~~~~~~ use_mase_files.cxx: In function 'int read_phylip_align(const char*, char***, char***, char***, char**, char**)': use_mase_files.cxx:521:7: warning: 'q' may be used uninitialized in this function [-Wmaybe-uninitialized] 521 | l = q - seq[totseqs - 1]; | ~~^~~~~~~~~~~~~~~~~~ use_mase_files.cxx: In function 'int read_clustal_align(const char*, char***, char***, char***, char**, char**)': use_mase_files.cxx:636:5: warning: 'wid_name' may be used uninitialized in this function [-Wmaybe-uninitialized] 636 | l -= wid_name; | ~~^~~~~~~~~~~ use_mase_files.cxx:638:17: warning: 'curr_max_len' may be used uninitialized in this function [-Wmaybe-uninitialized] 638 | curr_max_len += CLU_BLOCK_LEN; use_mase_files.cxx:650:8: warning: 'l' may be used uninitialized in this function [-Wmaybe-uninitialized] 650 | memcpy(seq[curr_spec]+curr_len, line + wid_name, l); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx: In function 'int printout(SEA_VIEW*, const char*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)': use_mase_files.cxx:1824:16: warning: 'vary_pos' may be used uninitialized in this function [-Wmaybe-uninitialized] 1824 | vary_pos[k++] = current + i + 1; | ^ use_mase_files.cxx:1948:34: warning: 'surface' may be used uninitialized in this function [-Wmaybe-uninitialized] 1948 | if (use_pdf || use_svg) delete surface; | ^~~~~~~ use_mase_files.cxx:1978:33: warning: 'descender' may be used uninitialized in this function [-Wmaybe-uninitialized] 1978 | fl_rectf(xx, y - fontsize + descender, char_width+1, fontsize); | ~~~~~~~~~~~~~^~~~~~~~~~~ use_mase_files.cxx:1687:35: note: 'descender' was declared here 1687 | double char_width = fontsize/2, descender, margin = 25; | ^~~~~~~~~ use_mase_files.cxx:1845:33: warning: 'top_margin' may be used uninitialized in this function [-Wmaybe-uninitialized] 1845 | if( use_pdf || use_svg) fl_draw(num_line, margin, top_margin + curr_lines * fontsize); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx: In function 'void format_conversion(int, char**)': use_mase_files.cxx:2268:20: warning: 'current_seg' may be used uninitialized in this function [-Wmaybe-uninitialized] 2268 | current_seg->next = seg; | ~~~~~~~~~~~~~~~~~~^~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -Dunix -Icsrc csrc/protpars.c csrc/protpars.c: In function 'protpars': csrc/protpars.c:2097:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 2097 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: csrc/protpars.c:129:12: warning: 'tmpa' defined but not used [-Wunused-variable] 129 | static aas tmpa; | ^~~~ csrc/protpars.c:111:21: warning: 'inseed0' defined but not used [-Wunused-variable] 111 | static long inseed, inseed0; | ^~~~~~~ csrc/protpars.c:111:13: warning: 'inseed' defined but not used [-Wunused-variable] 111 | static long inseed, inseed0; | ^~~~~~ csrc/protpars.c:107:94: warning: 'weightfilename' defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~~~~~ csrc/protpars.c:107:58: warning: 'intreename' defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~ csrc/protpars.c:107:35: warning: 'outfilename' defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~~ csrc/protpars.c:107:13: warning: 'infilename' defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -Dunix -Icsrc csrc/dnapars.c csrc/dnapars.c: In function 'dnapars': csrc/dnapars.c:1685:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1685 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: csrc/dnapars.c:112:17: warning: 'names' defined but not used [-Wunused-variable] 112 | static boolean *names; | ^~~~~ csrc/dnapars.c:108:16: warning: 'nothing' defined but not used [-Wunused-variable] 108 | static baseptr nothing; | ^~~~~~~ csrc/dnapars.c:81:6: warning: 'weightfilename' defined but not used [-Wunused-variable] 81 | weightfilename[FNMLNGTH]; | ^~~~~~~~~~~~~~ csrc/dnapars.c:80:58: warning: 'intreename' defined but not used [-Wunused-variable] 80 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, | ^~~~~~~~~~ csrc/dnapars.c:80:35: warning: 'outfilename' defined but not used [-Wunused-variable] 80 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, | ^~~~~~~~~~~ csrc/dnapars.c:80:13: warning: 'infilename' defined but not used [-Wunused-variable] 80 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, | ^~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -Dunix -Icsrc csrc/raa_acnuc.c csrc/raa_acnuc.c: In function 'raa_bit1': csrc/raa_acnuc.c:1083:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable] 1083 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function 'raa_bit0': csrc/raa_acnuc.c:1093:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable] 1093 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function 'raa_copylist': csrc/raa_acnuc.c:1114:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable] 1114 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function 'raa_zerolist': csrc/raa_acnuc.c:1124:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable] 1124 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function 'raa_setliststate': csrc/raa_acnuc.c:1134:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable] 1134 | char *reponse, str_type[3]; | ^~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF trees.cxx trees.cxx: In function 'matrix* Obs_Dist(allseq*, model*)': trees.cxx:1581:9: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable] 1581 | phydbl unc_len; | ^~~~~~~ trees.cxx: In function 'matrix* K80_dist_nogamma(allseq*)': trees.cxx:1723:9: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable] 1723 | phydbl unc_len; | ^~~~~~~ trees.cxx: In function 'void run_phyml_callback(Fl_Widget*, void*)': trees.cxx:1301:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1301 | fread(bootstrap_trees, l, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function 'void command_line_phylogeny(int, char**)': trees.cxx:2794:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2794 | fread(utree, s, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~ trees.cxx: In function 'char* run_parsimony_method(SEA_VIEW*, int, const char*, int, int, int, int, Fl_Box*, dnapars_S_option, const char**, float, int, char**, void (*)(const char*, ...))': trees.cxx:2379:40: warning: '%d' directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 2379 | sprintf(tmp, "Bootstrap replicate: %d", j + 1); | ^~ trees.cxx:2379:18: note: directive argument in the range [1, 2147483647] 2379 | sprintf(tmp, "Bootstrap replicate: %d", j + 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from seaview.h:3, from trees.cxx:6: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 23 and 32 bytes into a destination of size 30 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ trees.cxx:2073:57: warning: ' best trees, ' directive writing 13 bytes into a region of size between 12 and 21 [-Wformat-overflow=] 2073 | if (count_best > 1) sprintf(best, "consensus of %d best trees, ", count_best); | ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from seaview.h:3, from trees.cxx:6: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 28 and 37 bytes into a destination of size 35 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ trees.cxx:2128:51: warning: 'all_best' may be used uninitialized in this function [-Wmaybe-uninitialized] 2128 | if (count > 1) final_tree = add_equally_best(final_tree, all_best, count); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ trees.cxx:2424:41: warning: 'all_best' may be used uninitialized in this function [-Wmaybe-uninitialized] 2424 | if (count > 1) tree = add_equally_best(tree, all_best, count); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ trees.cxx:2357:33: note: 'all_best' was declared here 2357 | char *tree, *newtree, *p, *q, *all_best, *bootstrap_trees = NULL; | ^~~~~~~~ trees.cxx: In function 'char* run_distance_method(SEA_VIEW*, int, int, int, int, int, Fl_Box*, const char*, int, const char*, const char*, int, void (*)(const char*, ...), int, int)': trees.cxx:520:10: warning: 'display_tree' may be used uninitialized in this function [-Wmaybe-uninitialized] 520 | return display_tree; | ^~~~~~~~~~~~ trees.cxx: In function 'char* replace_tree_names_by_rank(const char*, char**, int)': trees.cxx:2732:24: warning: 'qstart' may be used uninitialized in this function [-Wmaybe-uninitialized] 2732 | q = qstart + strlen(qstart); | ~~~~~~^~~~~~~~ trees.cxx: In function 'void command_line_phylogeny(int, char**)': trees.cxx:2845:11: warning: 'tree' may be used uninitialized in this function [-Wmaybe-uninitialized] 2845 | fwrite(tree, strlen(tree), 1, out); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treerecs_draw.cxx treerecs_draw.cxx: In function 'void treerecs_dialog(Fl_Widget*, void*)': treerecs_draw.cxx:489:20: warning: unused variable 'recphylowml_window' [-Wunused-variable] 489 | Fl_Window* recphylowml_window = | ^~~~~~~~~~~~~~~~~~ treerecs_draw.cxx:455:9: warning: unused variable 'status' [-Wunused-variable] 455 | int status = | ^~~~~~ treerecs_draw.cxx: In member function 'virtual void Fl_SVG_Box::draw()': treerecs_draw.cxx:654:13: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 654 | while(i < svgtexts_size){ | ~~^~~~~~~~~~~~~~~ treerecs_draw.cxx: In constructor 'Fl_SVG_Box::Fl_SVG_Box(int, int, int, int, const char*)': treerecs_draw.cxx:738:10: warning: 'Fl_SVG_Box::zoom' will be initialized after [-Wreorder] 738 | double zoom; | ^~~~ treerecs_draw.cxx:736:10: warning: 'double Fl_SVG_Box::svg_shift_x' [-Wreorder] 736 | double svg_shift_x; | ^~~~~~~~~~~ treerecs_draw.cxx:686:13: warning: when initialized here [-Wreorder] 686 | FL_EXPORT Fl_SVG_Box(int x, int y, int w, int h, const char* filename) : | ^~~~~~~~~~ treerecs_draw.cxx:737:10: warning: 'Fl_SVG_Box::svg_shift_y' will be initialized after [-Wreorder] 737 | double svg_shift_y; | ^~~~~~~~~~~ treerecs_draw.cxx:733:16: warning: 'unsigned int Fl_SVG_Box::svgtexts_size' [-Wreorder] 733 | unsigned int svgtexts_size; | ^~~~~~~~~~~~~ treerecs_draw.cxx:686:13: warning: when initialized here [-Wreorder] 686 | FL_EXPORT Fl_SVG_Box(int x, int y, int w, int h, const char* filename) : | ^~~~~~~~~~ treerecs_draw.cxx: In destructor 'virtual Fl_SVG_Box::~Fl_SVG_Box()': treerecs_draw.cxx:722:22: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 722 | for(int i = 0; i < svgtexts_size ; i++) { | ~~^~~~~~~~~~~~~~~ treerecs_draw.cxx: In constructor 'SVG_View_data::SVG_View_data()': treerecs_draw.cxx:762:15: warning: 'SVG_View_data::reconciliation_score_message' will be initialized after [-Wreorder] 762 | const char* reconciliation_score_message; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ treerecs_draw.cxx:759:9: warning: 'float SVG_View_data::total_cost' [-Wreorder] 759 | float total_cost; | ^~~~~~~~~~ treerecs_draw.cxx:764:3: warning: when initialized here [-Wreorder] 764 | SVG_View_data() : | ^~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -Dunix -Icsrc csrc/phylip.c csrc/phylip.c: In function 'scan_eoln': csrc/phylip.c:161:8: warning: variable 'ch' set but not used [-Wunused-but-set-variable] 161 | char ch; | ^~ csrc/phylip.c: In function 'stringnames_new': csrc/phylip.c:2980:8: warning: variable 'len' set but not used [-Wunused-but-set-variable] 2980 | long len, i; | ^~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF seaview.cxx seaview.cxx: In function 'int delete_selected_seqs(SEA_VIEW*)': seaview.cxx:1753:2: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1753 | for(i = 0, j = 0; i< view->tot_seqs; i++) | ^~~ seaview.cxx:1756:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1756 | memcpy(view->col_rank , temp_data, new_tot_seqs * sizeof(char *) ); | ^~~~~~ seaview.cxx: In function 'void colors_callback(Fl_Widget*, void*)': seaview.cxx:1907:15: warning: variable 'item' set but not used [-Wunused-but-set-variable] 1907 | Fl_Menu_Item *item; | ^~~~ seaview.cxx: In function 'void delete_tmp_filename(const char*)': seaview.cxx:636:9: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 636 | system(fname); | ~~~~~~^~~~~~~ seaview.cxx: In function 'char* run_and_close_native_file_chooser(Fl_Native_File_Chooser*, int)': seaview.cxx:2899:38: warning: ignoring return value of 'int chdir(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2899 | if( *last_visited_directory )chdir(last_visited_directory); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ seaview.cxx: In function 'void help_callback(Fl_Widget*, void*)': seaview.cxx:3614:12: warning: '%s' directive argument is null [-Wformat-overflow=] 3614 | fl_alert( | ~~~~~~~~^ 3615 | #ifdef __APPLE__ | ~~~~~~~~~~~~~~~~ 3616 | "No help information in program resources" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3617 | #else | ~~~~~ 3618 | "Help file %s\nnot found in PATH directories nor in current directory", help_file | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3619 | #endif | ~~~~~~ 3620 | ); | ~ seaview.cxx: In function 'void _Z11draw_headerP9Fl_WidgetP9_SEA_VIEW.part.0(Fl_Widget*, SEA_VIEW*)': seaview.cxx:1124:23: warning: '%7d' directive writing between 7 and 11 bytes into a region of size 10 [-Wformat-overflow=] 1124 | sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1); | ^~~ seaview.cxx:1124:22: note: directive argument in the range [-2147483648, 2147483646] 1124 | sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1); | ^~~~~ In file included from /usr/include/stdio.h:866, from seaview.h:3, from seaview.cxx:67: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 8 and 12 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:532, from seaview.h:5, from seaview.cxx:67: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void goto_callback(Fl_Widget*, void*)' at seaview.cxx:2728:9: /usr/include/bits/string_fortified.h:91:34: warning: 'char* __builtin___strncpy_chk(char*, const char*, long unsigned int, long unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seaview.cxx: In function 'void goto_callback(Fl_Widget*, void*)': seaview.cxx:2726:12: note: length computed here 2726 | l = strlen(p); | ~~~~~~^~~ seaview.cxx: In function 'void del_gap_only_sites(SEA_VIEW*)': seaview.cxx:1690:9: warning: 'debut' may be used uninitialized in this function [-Wmaybe-uninitialized] 1690 | count = position - debut; | ~~~~~~^~~~~~~~~~~~~~~~~~ seaview.cxx: In function 'int delete_selected_seqs(SEA_VIEW*)': seaview.cxx:1762:16: warning: 'temp_int' may be used uninitialized in this function [-Wmaybe-uninitialized] 1762 | temp_int[j++]= view->list_species_sets[numset][i]; | ^ seaview.cxx:1730:42: warning: 'temp_data' may be used uninitialized in this function [-Wmaybe-uninitialized] 1730 | if( ! view->sel_seqs[i] ) temp_data[j++] = (void *) viewasprots[i]; | ^ seaview.cxx: In function 'void edit_menu_callback(Fl_Widget*, void*)': seaview.cxx:2563:10: warning: 'new_pos' may be used uninitialized in this function [-Wmaybe-uninitialized] 2563 | new_pos += 2; | ~~~~~~~~^~~~ seaview.cxx: In function 'void handle_keyboard(SEA_VIEW*, unsigned int, int)': seaview.cxx:4599:2: warning: 'count_each' may be used uninitialized in this function [-Wmaybe-uninitialized] 4599 | if(count_each == multipl && | ^~ seaview.cxx:4726:3: warning: 'count_each' may be used uninitialized in this function [-Wmaybe-uninitialized] 4726 | if(count_each == multipl && | ^~ seaview.cxx:4650:2: warning: 'count_each' may be used uninitialized in this function [-Wmaybe-uninitialized] 4650 | if(count_each == multipl && view->regions != NULL) | ^~ seaview.cxx:4609:10: warning: 'count' may be used uninitialized in this function [-Wmaybe-uninitialized] 4609 | new_pos = view->cursor_site - count; | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treedraw.cxx treedraw.cxx: In function 'int count_node(noeud*, noeud*)': treedraw.cxx:3303:15: warning: argument 2 null where non-null expected [-Wnonnull] 3303 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from seaview.h:5, from treedraw.h:4, from treedraw.cxx:18: /usr/include/string.h:140:12: note: in a call to function 'int strcmp(const char*, const char*)' declared here 140 | extern int strcmp (const char *__s1, const char *__s2) | ^~~~~~ treedraw.cxx:3303:52: warning: argument 2 null where non-null expected [-Wnonnull] 3303 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from seaview.h:5, from treedraw.h:4, from treedraw.cxx:18: /usr/include/string.h:140:12: note: in a call to function 'int strcmp(const char*, const char*)' declared here 140 | extern int strcmp (const char *__s1, const char *__s2) | ^~~~~~ treedraw.cxx:3303:89: warning: argument 2 null where non-null expected [-Wnonnull] 3303 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from seaview.h:5, from treedraw.h:4, from treedraw.cxx:18: /usr/include/string.h:140:12: note: in a call to function 'int strcmp(const char*, const char*)' declared here 140 | extern int strcmp (const char *__s1, const char *__s2) | ^~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -Dunix -Icsrc csrc/seq.c csrc/seq.c: In function 'collapsetree': csrc/seq.c:4015:11: warning: variable 'j' set but not used [-Wunused-but-set-variable] 4015 | long i, j, index, index2, numd; | ^ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF FL/Fl_SVG_Image.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -o seaview seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -ldl -lpthread -lz make: Leaving directory '/usr/src/RPM/BUILD/seaview' + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.22153 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/seaview-buildroot + : + /bin/rm -rf -- /usr/src/tmp/seaview-buildroot + PATH=/usr/libexec/rpm-build:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games + cd seaview + mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/seaview + mkdir -p /usr/src/tmp/seaview-buildroot/usr/bin + mkdir -p /usr/src/tmp/seaview-buildroot//usr/share/man/man1 + mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/applications/ + install -m 755 seaview /usr/src/tmp/seaview-buildroot//usr/bin + install -m 644 seaview.html /usr/src/tmp/seaview-buildroot/usr/share/seaview/ + install -m 644 /usr/src/RPM/SOURCES/seaview.desktop /usr/src/tmp/seaview-buildroot/usr/share/applications/ + mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/pixmaps/ + install -m 0644 -p seaview.xpm /usr/src/tmp/seaview-buildroot/usr/share/pixmaps/seaview.xpm + install -m 644 seaview.1 /usr/src/tmp/seaview-buildroot//usr/share/man/man1 + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/seaview-buildroot (auto) Verifying and fixing files in /usr/src/tmp/seaview-buildroot (binconfig,pkgconfig,libtool,desktop,gnuconfig) /usr/share/applications/seaview.desktop: performed minor cleanup: 6c6 < Icon=seaview.xpm --- > Icon=seaview Checking contents of files in /usr/src/tmp/seaview-buildroot/ (default) Compressing files in /usr/src/tmp/seaview-buildroot (auto) Verifying ELF objects in /usr/src/tmp/seaview-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) Hardlinking identical .pyc and .opt-?.pyc files Executing(%check): /bin/sh -e /usr/src/tmp/rpm-tmp.66449 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd seaview + exit 0 Processing files: seaview-5.0.4-alt1 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.66449 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd seaview + DOCDIR=/usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.4 + export DOCDIR + rm -rf /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.4 + /bin/mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.4 + cp -prL seaview.1.xml example.nxs /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.4 + chmod -R go-w /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.4 + chmod -R a+rX /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.4 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.QVhUhb find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,python3,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.f4Eosb find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) Requires: /lib64/ld-linux-x86-64.so.2, libc.so.6(GLIBC_2.11)(64bit), libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.15)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libc.so.6(GLIBC_2.7)(64bit), libfltk.so.2()(64bit) >= set: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, libfltk_images.so.2()(64bit) >= set:jfWg1JaebIlCT0Tk9Z0EM7, libgcc_s.so.1(GCC_3.0)(64bit), libm.so.6(GLIBC_2.2.5)(64bit), libm.so.6(GLIBC_2.29)(64bit), libpthread.so.0(GLIBC_2.2.5)(64bit), libstdc++.so.6(CXXABI_1.3)(64bit), libstdc++.so.6(CXXABI_1.3.8)(64bit), libstdc++.so.6(CXXABI_1.3.9)(64bit), libstdc++.so.6(GLIBCXX_3.4)(64bit), libstdc++.so.6(GLIBCXX_3.4.20)(64bit), libstdc++.so.6(GLIBCXX_3.4.21)(64bit), libz.so.1()(64bit) >= set:khM4g6JBZuPIo4PSZj1, rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.HNtpP7 Creating seaview-debuginfo package Processing files: seaview-debuginfo-5.0.4-alt1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.eRALk7 find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.jEjA5a find-requires: running scripts (debuginfo) Requires: seaview = 5.0.4-alt1, /usr/lib/debug/lib64/ld-linux-x86-64.so.2.debug, debug64(libc.so.6), debug64(libfltk.so.2), debug64(libfltk_images.so.2), debug64(libgcc_s.so.1), debug64(libm.so.6), debug64(libpthread.so.0), debug64(libstdc++.so.6), debug64(libz.so.1) Adding to seaview-debuginfo a strict dependency on seaview Wrote: /usr/src/RPM/RPMS/x86_64/seaview-5.0.4-alt1.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/seaview-debuginfo-5.0.4-alt1.x86_64.rpm (w2.lzdio) 24.98user 4.39system 0:09.66elapsed 303%CPU (0avgtext+0avgdata 103688maxresident)k 0inputs+0outputs (0major+731077minor)pagefaults 0swaps 3.54user 2.89system 0:26.20elapsed 24%CPU (0avgtext+0avgdata 129276maxresident)k 1968inputs+0outputs (0major+235850minor)pagefaults 0swaps --- seaview-5.0.4-alt1.x86_64.rpm.repo 2021-05-26 22:25:55.000000000 +0000 +++ seaview-5.0.4-alt1.x86_64.rpm.hasher 2024-06-16 01:52:56.976992281 +0000 @@ -35,3 +35,3 @@ Provides: seaview = 5.0.4-alt1:sisyphus+272606.100.1.1 -File: /usr/bin/seaview 100755 root:root ce53f1535f3772ff288e95cde88f8373 +File: /usr/bin/seaview 100755 root:root 4bb93784e82a456c74b30c0ab26f425c File: /usr/share/applications/seaview.desktop 100644 root:root 8245612f5c1c5c0af83c390b3f0b74e2 @@ -44,2 +44,2 @@ File: /usr/share/seaview/seaview.html 100644 root:root f36140a94c4e5ea66c43fae574f49638 -RPMIdentity: 43ac6ad0e1e99b1084133a743e09ad19f7e85ff8e66523028901e364434606ed2430f552b815f9d5719a794cecb13021cad33bdbda7e703c95c6ae9fbe2c5213 +RPMIdentity: 461e9ff75bd59bd60643bd68e9e3186943a57c370811c3ecf54b011be760398b340a8def041686c6989f066da6a0b750f87df6efe91a881b95ae934234f9868b --- seaview-debuginfo-5.0.4-alt1.x86_64.rpm.repo 2021-05-26 22:25:55.000000000 +0000 +++ seaview-debuginfo-5.0.4-alt1.x86_64.rpm.hasher 2024-06-16 01:52:57.058993915 +0000 @@ -1,4 +1,4 @@ -/usr/lib/debug/.build-id/f7 40755 root:root -/usr/lib/debug/.build-id/f7/fa4e062be61f6f50305414c8433ffaa9099a38 120777 root:root ../../../../bin/seaview -/usr/lib/debug/.build-id/f7/fa4e062be61f6f50305414c8433ffaa9099a38.debug 120777 root:root ../../usr/bin/seaview.debug +/usr/lib/debug/.build-id/b9 40755 root:root +/usr/lib/debug/.build-id/b9/27ee3c60b167bce8f3799f937d44f691606491 120777 root:root ../../../../bin/seaview +/usr/lib/debug/.build-id/b9/27ee3c60b167bce8f3799f937d44f691606491.debug 120777 root:root ../../usr/bin/seaview.debug /usr/lib/debug/usr/bin/seaview.debug 100644 root:root @@ -74,6 +74,6 @@ Provides: seaview-debuginfo = 5.0.4-alt1:sisyphus+272606.100.1.1 -File: /usr/lib/debug/.build-id/f7 40755 root:root -File: /usr/lib/debug/.build-id/f7/fa4e062be61f6f50305414c8433ffaa9099a38 120777 root:root ../../../../bin/seaview -File: /usr/lib/debug/.build-id/f7/fa4e062be61f6f50305414c8433ffaa9099a38.debug 120777 root:root ../../usr/bin/seaview.debug -File: /usr/lib/debug/usr/bin/seaview.debug 100644 root:root 826d2403754ddc41e38c91f3e8cc16a9 +File: /usr/lib/debug/.build-id/b9 40755 root:root +File: /usr/lib/debug/.build-id/b9/27ee3c60b167bce8f3799f937d44f691606491 120777 root:root ../../../../bin/seaview +File: /usr/lib/debug/.build-id/b9/27ee3c60b167bce8f3799f937d44f691606491.debug 120777 root:root ../../usr/bin/seaview.debug +File: /usr/lib/debug/usr/bin/seaview.debug 100644 root:root 42edb0095d14b0a1de849b5b64fa7842 File: /usr/src/debug/seaview 40755 root:root @@ -136,2 +136,2 @@ File: /usr/src/debug/seaview/xfmatpt.cxx 100644 root:root 29e39edcd957d1537b78da25d5b0b892 -RPMIdentity: a050b8142a2931c80fa35abbba2808dcd7439d9abb44fbdec40e82f2497a8967494ab5bd42de87230c2cbe7f784e7875cef9158c9a3fa80a29bec34bdc1feab2 +RPMIdentity: c39a10a8f3b3eebc0731caeb849205d171416a48e20c2f5ab0a42f387f268fcda56a7349cb0fdf71e290d7c2c50f14c251aa10f14fe66ed72780e974d9ea79fc