<86>Apr 21 02:56:41 userdel[477361]: delete user 'rooter' <86>Apr 21 02:56:41 userdel[477361]: removed group 'rooter' owned by 'rooter' <86>Apr 21 02:56:41 userdel[477361]: removed shadow group 'rooter' owned by 'rooter' <86>Apr 21 02:56:41 groupadd[477408]: group added to /etc/group: name=rooter, GID=1793 <86>Apr 21 02:56:41 groupadd[477408]: group added to /etc/gshadow: name=rooter <86>Apr 21 02:56:41 groupadd[477408]: new group: name=rooter, GID=1793 <86>Apr 21 02:56:41 useradd[477434]: new user: name=rooter, UID=1793, GID=1793, home=/root, shell=/bin/bash <86>Apr 21 02:56:41 userdel[477471]: delete user 'builder' <86>Apr 21 02:56:41 userdel[477471]: removed group 'builder' owned by 'builder' <86>Apr 21 02:56:41 userdel[477471]: removed shadow group 'builder' owned by 'builder' <86>Apr 21 02:56:41 groupadd[477488]: group added to /etc/group: name=builder, GID=1794 <86>Apr 21 02:56:41 groupadd[477488]: group added to /etc/gshadow: name=builder <86>Apr 21 02:56:41 groupadd[477488]: new group: name=builder, GID=1794 <86>Apr 21 02:56:41 useradd[477515]: new user: name=builder, UID=1794, GID=1794, home=/usr/src, shell=/bin/bash /usr/src/in/srpm/openbabel-2.4.1-alt7.src.rpm: The use of such a license name is ambiguous: GPL warning: Macro %cmake_insource not found <13>Apr 21 02:56:46 rpmi: libexpat-2.5.0-alt1 p10+324220.100.1.1 1688465137 installed <13>Apr 21 02:56:46 rpmi: libpng16-1.6.37-alt1 sisyphus+275734.100.2.1 1624788826 installed <13>Apr 21 02:56:46 rpmi: xorg-proto-devel-2021.5-alt1 p10+295526.40.6.1 1646400646 installed <13>Apr 21 02:56:46 rpmi: libwayland-client-1.22.0-alt1.1 p10+332446.100.1.1 1697975867 installed <13>Apr 21 02:56:46 rpmi: libogg-1.3.5-alt1 sisyphus+278100.3400.1.1 1626058929 installed <13>Apr 21 02:56:46 rpmi: libjpeg-2:2.0.6-alt3 sisyphus+276287.100.3.1 1625270396 installed <13>Apr 21 02:56:46 rpmi: zlib-devel-1.2.13-alt1 p10+318109.100.2.1 1682690580 installed <13>Apr 21 02:56:46 rpmi: libglvnd-7:1.6.0-alt1 p10+308277.140.4.1 1671274291 installed <13>Apr 21 02:56:46 rpmi: libXau-1.0.9-alt1 sisyphus+278247.100.1.1 1626080736 installed <13>Apr 21 02:56:46 rpmi: libwayland-server-1.22.0-alt1.1 p10+332446.100.1.1 1697975867 installed <13>Apr 21 02:56:47 rpmi: libicu69-1:6.9.1-alt2 sisyphus+277632.100.1.1 1625726150 installed <13>Apr 21 02:56:47 rpmi: libgraphite2-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605111 installed <13>Apr 21 02:56:47 rpmi: xml-utils-1:2.9.12-alt1.p10.1 p10+314068.100.3.1 1675354348 installed <13>Apr 21 02:56:47 rpmi: libidn2-2.3.2-alt1 p10+281239.100.3.1 1627673251 installed <13>Apr 21 02:56:47 rpmi: rpm-build-gir-0.7.3-alt3 sisyphus+242150.100.1.1 1575312005 installed <13>Apr 21 02:56:47 rpmi: libgraphite2-devel-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605111 installed <13>Apr 21 02:56:47 rpmi: icu-utils-1:6.9.1-alt2 sisyphus+277632.100.1.1 1625726150 installed <13>Apr 21 02:56:47 rpmi: libicu-devel-1:6.9.1-alt2 sisyphus+277632.100.1.1 1625726150 installed <13>Apr 21 02:56:47 rpmi: libXau-devel-1.0.9-alt1 sisyphus+278247.100.1.1 1626080736 installed <13>Apr 21 02:56:47 rpmi: libpng-devel-1.6.37-alt1 sisyphus+275734.100.2.1 1624788826 installed <13>Apr 21 02:56:47 rpmi: libflac8-1.3.3.0.79.37d1-alt2 sisyphus+278100.1400.1.1 1626058195 installed <13>Apr 21 02:56:47 rpmi: libvorbis-1.3.7-alt1 sisyphus+275738.100.1.1 1624751601 installed <13>Apr 21 02:56:47 rpmi: libwayland-cursor-1.22.0-alt1.1 p10+332446.100.1.1 1697975867 installed <13>Apr 21 02:56:47 rpmi: libwayland-egl-4:18.1.0-alt1.1 p10+332446.100.1.1 1697975867 installed <13>Apr 21 02:56:47 rpmi: libncurses-6.3.20220618-alt1 p10+319472.100.4.1 1685092691 installed <13>Apr 21 02:56:47 rpmi: libtinfo-devel-6.3.20220618-alt1 p10+319472.100.4.1 1685092691 installed <13>Apr 21 02:56:47 rpmi: libncurses-devel-6.3.20220618-alt1 p10+319472.100.4.1 1685092691 installed <13>Apr 21 02:56:47 rpmi: libgtk+2-locales-2.24.33-alt1 sisyphus+278555.100.1.2 1626252653 installed <13>Apr 21 02:56:47 rpmi: liborc-0.4.33-alt1 p10+318092.100.1.1 1680710820 installed <13>Apr 21 02:56:47 rpmi: libgudev-1:237-alt1 p10+284327.700.7.1 1632404964 installed <13>Apr 21 02:56:47 rpmi: libfribidi-1.0.12-alt1 p10+298803.100.1.1 1650530271 installed <13>Apr 21 02:56:47 rpmi: libdatrie-0.2.9-alt1_6 sisyphus+278217.100.1.1 1626078469 installed <13>Apr 21 02:56:47 rpmi: libthai-0.1.28-alt1_1 sisyphus+275403.100.1.2 1624502529 installed <13>Apr 21 02:56:47 rpmi: libpixman-3:0.42.2-alt1 p10+309562.100.3.1 1669140234 installed <13>Apr 21 02:56:47 rpmi: libatk-locales-2.36.0-alt1 sisyphus+275092.100.2.1 1624560096 installed <13>Apr 21 02:56:47 rpmi: libatk-2.36.0-alt1 sisyphus+275092.100.2.1 1624560096 installed <13>Apr 21 02:56:47 rpmi: libopus-1.4-alt1 p10+322083.100.3.1 1686925405 installed <13>Apr 21 02:56:47 rpmi: libmpg123-1.30.2-alt1 p10+307797.100.3.1 1666362749 installed <13>Apr 21 02:56:47 rpmi: liblame-3.100-alt1 sisyphus+276241.100.1.2 1624925657 installed <13>Apr 21 02:56:47 rpmi: libgsm-1.0.17-alt1 sisyphus+275359.100.2.1 1624907612 installed <13>Apr 21 02:56:47 rpmi: libsndfile-1.1.0-alt1 p10+307797.200.3.1 1666362813 installed <13>Apr 21 02:56:47 rpmi: liblz4-1:1.9.3-alt1 sisyphus+278100.4000.1.1 1626059441 installed <13>Apr 21 02:56:47 rpmi: libsystemd-1:249.17-alt2 p10+340218.100.1.1 1707505676 installed <13>Apr 21 02:56:47 rpmi: libdbus-1.14.10-alt1 p10+342527.100.1.1 1710230133 installed <13>Apr 21 02:56:47 rpmi: libavahi-0.8-alt2 sisyphus+279391.100.1.2 1626530679 installed <13>Apr 21 02:56:47 rpmi: libasyncns-0.8-alt2.qa1 sisyphus+275091.100.1.1 1624402241 installed <13>Apr 21 02:56:47 rpmi: libICE-1.0.10-alt1 sisyphus+278827.100.1.1 1626220279 installed <13>Apr 21 02:56:47 rpmi: libSM-1.2.3-alt1 sisyphus+278820.100.1.1 1626219264 installed <13>Apr 21 02:56:47 rpmi: libxshmfence-1.3-alt1 sisyphus+278248.100.1.1 1626080762 installed <13>Apr 21 02:56:47 rpmi: libX11-locales-3:1.8.7-alt1 p10+330924.200.2.1 1697304232 installed <13>Apr 21 02:56:47 rpmi: libXdmcp-1.1.3-alt1 sisyphus+278816.100.1.1 1626219231 installed <13>Apr 21 02:56:47 rpmi: libxcb-1.14-alt1 sisyphus+277968.100.1.3 1625952322 installed <13>Apr 21 02:56:47 rpmi: libX11-3:1.8.7-alt1 p10+330924.200.2.1 1697304232 installed <13>Apr 21 02:56:47 rpmi: libXext-1.3.4-alt1 sisyphus+278817.100.1.3 1626262596 installed <13>Apr 21 02:56:47 rpmi: libXrender-0.9.10-alt1 sisyphus+278480.100.1.2 1626227740 installed <13>Apr 21 02:56:47 rpmi: libXfixes-5.0.3-alt1 sisyphus+275326.100.2.2 1624573638 installed <13>Apr 21 02:56:47 rpmi: libXrandr-1.5.2-alt1 sisyphus+275330.100.2.2 1624575558 installed <13>Apr 21 02:56:47 rpmi: libXinerama-1.1.4-alt1 sisyphus+275328.100.2.2 1624575558 installed <13>Apr 21 02:56:49 rpmi: libxcb-devel-1.14-alt1 sisyphus+277968.100.1.3 1625952322 installed <13>Apr 21 02:56:49 rpmi: libX11-devel-3:1.8.7-alt1 p10+330924.200.2.1 1697304232 installed <13>Apr 21 02:56:49 rpmi: libXext-devel-1.3.4-alt1 sisyphus+278817.100.1.3 1626262596 installed <13>Apr 21 02:56:49 rpmi: libXrender-devel-0.9.10-alt1 sisyphus+278480.100.1.2 1626227740 installed <13>Apr 21 02:56:49 rpmi: libXcursor-1.2.0-alt1 sisyphus+278256.100.1.2 1626134578 installed <13>Apr 21 02:56:49 rpmi: libXxf86vm-1.1.4-alt2 sisyphus+275334.100.2.2 1624577011 installed <13>Apr 21 02:56:49 rpmi: libXi-1.7.10-alt1 sisyphus+278284.100.1.2 1626151198 installed <13>Apr 21 02:56:49 rpmi: libXcomposite-0.4.5-alt1 sisyphus+275323.100.2.2 1624573269 installed <13>Apr 21 02:56:49 rpmi: libXdamage-1.1.5-alt1 sisyphus+275324.100.2.2 1624573269 installed <13>Apr 21 02:56:49 rpmi: libpulseaudio-17.0-alt2 p10+339259.100.6.1 1707986187 installed <13>Apr 21 02:56:49 rpmi: libpciaccess-1:0.17-alt1 p10+321839.100.2.1 1686299452 installed <13>Apr 21 02:56:49 rpmi: libdrm-1:2.4.118-alt1 p10+336491.100.3.1 1703318945 installed <13>Apr 21 02:56:49 rpmi: libGLX-mesa-4:23.1.9-alt2 p10+336018.100.3.1 1703319968 installed <13>Apr 21 02:56:49 rpmi: libGLX-7:1.6.0-alt1 p10+308277.140.4.1 1671274291 installed <13>Apr 21 02:56:49 rpmi: libgbm-4:23.1.9-alt2 p10+336018.100.3.1 1703319968 installed <13>Apr 21 02:56:49 rpmi: libEGL-mesa-4:23.1.9-alt2 p10+336018.100.3.1 1703319968 installed <13>Apr 21 02:56:49 rpmi: libEGL-7:1.6.0-alt1 p10+308277.140.4.1 1671274291 installed <13>Apr 21 02:56:49 rpmi: libGL-7:1.6.0-alt1 p10+308277.140.4.1 1671274291 installed <13>Apr 21 02:56:49 rpmi: icon-theme-hicolor-0.17-alt2 sisyphus+248343.100.1.1 1584979043 installed <13>Apr 21 02:56:49 rpmi: libwebp7-1.3.2-alt1 p10+334597.100.5.1 1701266006 installed <13>Apr 21 02:56:49 rpmi: libjbig2.1-2.1-alt2 p10+327649.100.4.1 1693857180 installed <13>Apr 21 02:56:49 rpmi: libdeflate-1.10-alt1 p10+300002.40.4.1 1652888688 installed <13>Apr 21 02:56:49 rpmi: libtiff5-4.4.0-alt2 p10+327649.400.4.1 1693857754 installed <13>Apr 21 02:56:49 rpmi: shared-mime-info-2.2-alt1 p10+305247.100.2.1 1661236019 installed <13>Apr 21 02:56:49 rpmi: libgdk-pixbuf-locales-2.42.6-alt1 sisyphus+277964.100.1.1 1625927113 installed <13>Apr 21 02:56:49 rpmi: gsettings-desktop-schemas-data-40.0-alt1 sisyphus+268501.300.4.2 1617041783 installed <13>Apr 21 02:56:49 rpmi: libgio-2.68.4-alt4 p10+296885.100.1.1 1647705736 installed <13>Apr 21 02:56:49 rpmi: gsettings-desktop-schemas-40.0-alt1 sisyphus+268501.300.4.2 1617041783 installed <13>Apr 21 02:56:49 rpmi: libgdk-pixbuf-2.42.6-alt1 sisyphus+277964.100.1.1 1625927113 installed <13>Apr 21 02:56:49 rpmi: libgstreamer1.0-1.20.6-alt1 p10+318092.200.2.1 1681730981 installed <13>Apr 21 02:56:49 rpmi: libgst-plugins1.0-1.20.6-alt1 p10+318092.300.2.1 1681731072 installed <13>Apr 21 02:56:49 rpmi: gtk-update-icon-cache-3.24.32-alt1 p10+296508.100.3.1 1648144248 installed <13>Apr 21 02:56:49 rpmi: gcc-c++-common-1.4.27-alt1 sisyphus+278099.1300.1.1 1626028636 installed <13>Apr 21 02:56:49 rpmi: libstdc++10-devel-10.3.1-alt2 sisyphus+277353.100.2.1 1625525890 installed <13>Apr 21 02:56:50 rpmi: gcc10-c++-10.3.1-alt2 sisyphus+277353.100.2.1 1625525890 installed <13>Apr 21 02:56:50 rpmi: libgdbm-1.8.3-alt10 sisyphus+278100.1600.1.1 1626058413 installed <13>Apr 21 02:56:50 rpmi: rpm-macros-cmake-3.23.2-alt3 p10+318897.100.9.1 1684492222 installed <13>Apr 21 02:56:50 rpmi: cmake-modules-3.23.2-alt3 p10+318897.100.9.1 1684492222 installed <13>Apr 21 02:56:50 rpmi: libuv-1.44.2-alt0.p10.1 p10+310327.220.21.1 1678360827 installed <13>Apr 21 02:56:50 rpmi: librhash-1.3.5-alt2 sisyphus+278212.100.1.1 1626077717 installed <13>Apr 21 02:56:50 rpmi: libjsoncpp19-1.8.4-alt5 sisyphus+277640.100.1.1 1625728472 installed <13>Apr 21 02:56:50 rpmi: publicsuffix-list-dafsa-20240415-alt1 p10+345250.100.1.1 1713270741 installed <13>Apr 21 02:56:50 rpmi: libpsl-0.21.5-alt1 p10+345385.100.1.1 1713430418 installed <13>Apr 21 02:56:50 rpmi: libnghttp2-1.61.0-alt1 p10+344447.40.1.1 1712304236 installed <13>Apr 21 02:56:50 rpmi: openldap-common-2.4.59-alt1.p10.2 p10+322965.300.3.1 1687183733 installed <13>Apr 21 02:56:50 rpmi: libntlm-1.5-alt1 sisyphus+278100.3300.1.1 1626058899 installed <13>Apr 21 02:56:50 rpmi: libidn-1.37-alt1 sisyphus+278604.100.1.1 1626095122 installed <13>Apr 21 02:56:50 rpmi: libverto-0.3.2-alt1_1 sisyphus+279289.100.1.3 1626493868 installed <13>Apr 21 02:56:50 rpmi: liblmdb-0.9.23-alt1 sisyphus+275369.100.1.2 1624493869 installed <13>Apr 21 02:56:50 rpmi: libkeyutils-1.6.3-alt1 sisyphus+266061.100.1.1 1612919566 installed <13>Apr 21 02:56:50 rpmi: libcom_err-1.46.2.0.16.f114-alt1 sisyphus+278100.1000.1.1 1626056805 installed <13>Apr 21 02:56:50 rpmi: libbrotlicommon-1.0.9-alt2 sisyphus+278430.100.1.2 1626213212 installed <13>Apr 21 02:56:50 rpmi: libbrotlidec-1.0.9-alt2 sisyphus+278430.100.1.2 1626213212 installed <13>Apr 21 02:56:50 rpmi: libharfbuzz-5.3.1-alt1 p10+311526.40.12.1 1678459109 installed <13>Apr 21 02:56:50 rpmi: libfreetype-2.11.0-alt1 p10+281745.100.1.1 1628002271 installed <13>Apr 21 02:56:50 rpmi: libfontconfig1-2.14.2-alt8 p10+328445.100.1.1 1693560956 installed <13>Apr 21 02:56:50 rpmi: libcairo-1:1.16.0-alt2 p10+312192.100.6.1 1672989606 installed <13>Apr 21 02:56:50 rpmi: fontconfig-2.14.2-alt8 p10+328445.100.1.1 1693560956 installed Updating fonts cache: <29>Apr 21 02:56:51 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Apr 21 02:56:51 rpmi: libXft-2.3.3-alt1 sisyphus+278258.100.1.2 1626135708 installed <13>Apr 21 02:56:51 rpmi: libpango-1.48.11-alt1 p10+293321.100.4.1 1643613179 installed <13>Apr 21 02:56:51 rpmi: libharfbuzz-icu-5.3.1-alt1 p10+311526.40.12.1 1678459109 installed <13>Apr 21 02:56:51 rpmi: libharfbuzz-gobject-5.3.1-alt1 p10+311526.40.12.1 1678459109 installed <13>Apr 21 02:56:51 rpmi: libp11-kit-0.24.1-alt1 p10+305061.100.3.1 1660573397 installed <13>Apr 21 02:56:51 rpmi: libtasn1-4.19.0-alt1 p10+309071.100.2.1 1668522760 installed <13>Apr 21 02:56:51 rpmi: rpm-macros-alternatives-0.5.2-alt1 p10+309129.100.2.1 1668066636 installed <13>Apr 21 02:56:51 rpmi: alternatives-0.5.2-alt1 p10+309129.100.2.1 1668066636 installed <13>Apr 21 02:56:51 rpmi: ca-certificates-2022.09.15-alt1 p10+308004.100.2.1 1665748370 installed <13>Apr 21 02:56:51 rpmi: ca-trust-0.1.6-alt1 p10+344774.100.1.1 1712685728 installed <13>Apr 21 02:56:51 rpmi: p11-kit-trust-0.24.1-alt1 p10+305061.100.3.1 1660573397 installed <13>Apr 21 02:56:51 rpmi: libcrypto1.1-1.1.1w-alt0.p10.1 p10+330586.100.4.1 1697560982 installed <13>Apr 21 02:56:51 rpmi: libssl1.1-1.1.1w-alt0.p10.1 p10+330586.100.4.1 1697560982 installed <86>Apr 21 02:56:51 groupadd[538614]: group added to /etc/group: name=_keytab, GID=499 <86>Apr 21 02:56:51 groupadd[538614]: group added to /etc/gshadow: name=_keytab <86>Apr 21 02:56:51 groupadd[538614]: new group: name=_keytab, GID=499 <13>Apr 21 02:56:51 rpmi: libkrb5-1.19.4-alt3 p10+338175.100.6.1 1706280757 installed <13>Apr 21 02:56:52 rpmi: python3-3.9.18-alt1 p10+340781.400.5.1 1709555259 installed <13>Apr 21 02:56:52 rpmi: python3-base-3.9.18-alt1 p10+340781.400.5.1 1709555259 installed <13>Apr 21 02:56:52 rpmi: glib2-devel-2.68.4-alt4 p10+296885.100.1.1 1647705736 installed <13>Apr 21 02:56:52 rpmi: libfreetype-devel-2.11.0-alt1 p10+281745.100.1.1 1628002271 installed <13>Apr 21 02:56:52 rpmi: libharfbuzz-devel-5.3.1-alt1 p10+311526.40.12.1 1678459109 installed <13>Apr 21 02:56:52 rpmi: fontconfig-devel-2.14.2-alt8 p10+328445.100.1.1 1693560956 installed <13>Apr 21 02:56:52 rpmi: libpython3-3.9.18-alt1 p10+340781.400.5.1 1709555259 installed <13>Apr 21 02:56:52 rpmi: tests-for-installed-python3-pkgs-0.1.22-alt1 p10+325520.200.7.1 1691156214 installed <13>Apr 21 02:56:52 rpmi: rpm-build-python3-0.1.22-alt1 p10+325520.200.7.1 1691156214 installed <13>Apr 21 02:56:52 rpmi: libgsasl-1.8.0-alt3 sisyphus+275307.100.1.2 1624478543 installed <86>Apr 21 02:56:52 groupadd[545483]: group added to /etc/group: name=sasl, GID=498 <86>Apr 21 02:56:52 groupadd[545483]: group added to /etc/gshadow: name=sasl <86>Apr 21 02:56:52 groupadd[545483]: new group: name=sasl, GID=498 <13>Apr 21 02:56:52 rpmi: libsasl2-3-2.1.27-alt2.1 sisyphus+278407.100.1.3 1626205817 installed <13>Apr 21 02:56:52 rpmi: libldap-2.4.59-alt1.p10.2 p10+322965.300.3.1 1687183733 installed <13>Apr 21 02:56:53 rpmi: libcups-2.4.7-alt2 p10+333093.100.2.1 1699595808 installed <13>Apr 21 02:56:53 rpmi: libgtk+2-2.24.33-alt1 sisyphus+278555.100.1.2 1626252653 installed <13>Apr 21 02:56:53 rpmi: wxGTK-2:2.8.12-alt1.svn20131012.6 sisyphus+277617.100.1.1 1625719317 installed <13>Apr 21 02:56:53 rpmi: libwxGTK-2:2.8.12-alt1.svn20131012.6 sisyphus+277617.100.1.1 1625719317 installed <13>Apr 21 02:56:53 rpmi: libarchive13-3.6.1-alt2 p10+311215.100.2.1 1670851728 installed <13>Apr 21 02:56:53 rpmi: libssh2-1.11.0-alt2 p10+339351.200.2.1 1706598963 installed <13>Apr 21 02:56:53 rpmi: libcurl-8.7.1-alt1 p10+343845.100.1.1 1711636853 installed <13>Apr 21 02:56:53 rpmi: alsa-ucm-conf-1.2.8-alt8 p10+323518.100.1.1 1687447425 installed <13>Apr 21 02:56:53 rpmi: alsa-topology-conf-1.2.5.1-alt1 sisyphus+274777.100.1.1 1624089141 installed <13>Apr 21 02:56:53 rpmi: libalsa-1:1.2.8-alt1 p10+310792.200.3.1 1670940516 installed <13>Apr 21 02:56:53 rpmi: libSDL-1.2.14-alt9 sisyphus+275261.100.1.2 1624469000 installed <13>Apr 21 02:56:53 rpmi: libwxGTK-devel-2:2.8.12-alt1.svn20131012.6 sisyphus+277617.100.1.1 1625719317 installed <13>Apr 21 02:56:53 rpmi: cmake-3.23.2-alt3 p10+318897.100.9.1 1684492222 installed <13>Apr 21 02:56:55 rpmi: python3-dev-3.9.18-alt1 p10+340781.400.5.1 1709555259 installed <13>Apr 21 02:56:55 rpmi: libcairo-devel-1:1.16.0-alt2 p10+312192.100.6.1 1672989606 installed <13>Apr 21 02:56:55 rpmi: gcc-c++-10-alt1 sisyphus+263054.200.3.1 1607517515 installed <13>Apr 21 02:56:55 rpmi: libxml2-devel-1:2.9.12-alt1.p10.1 p10+314068.100.3.1 1675354348 installed <13>Apr 21 02:56:55 rpmi: eigen3-3.3.9-alt2 sisyphus+276487.100.2.1 1625060303 installed Building target platforms: x86_64 Building for target x86_64 Wrote: /usr/src/in/nosrpm/openbabel-2.4.1-alt7.nosrc.rpm (w1.gzdio) Installing openbabel-2.4.1-alt7.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.52722 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf openbabel-2.4.1 + echo 'Source #0 (openbabel-2.4.1.tar.gz):' Source #0 (openbabel-2.4.1.tar.gz): + /bin/gzip -dc /usr/src/RPM/SOURCES/openbabel-2.4.1.tar.gz + /bin/tar -xf - + cd openbabel-2.4.1 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #1 (openbabel-2.4.1-upstream-gcc-version-1.patch):' Patch #1 (openbabel-2.4.1-upstream-gcc-version-1.patch): + /usr/bin/patch -p1 patching file CMakeLists.txt + echo 'Patch #2 (openbabel-2.4.1-upstream-gcc-version-2.patch):' Patch #2 (openbabel-2.4.1-upstream-gcc-version-2.patch): + /usr/bin/patch -p1 patching file CMakeLists.txt Hunk #3 succeeded at 232 (offset -1 lines). patching file cmake/modules/MacroEnsureVersion.cmake + echo 'Patch #3 (openbabel-2.4.1-narrowing-conversion.patch):' Patch #3 (openbabel-2.4.1-narrowing-conversion.patch): + /usr/bin/patch -p1 patching file src/formats/pngformat.cpp patching file src/formats/yasaraformat.cpp + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.52722 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd openbabel-2.4.1 + mkdir -p . + cmake -DCMAKE_SKIP_INSTALL_RPATH:BOOL=yes '-DCMAKE_C_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3' '-DCMAKE_CXX_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3' '-DCMAKE_Fortran_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3' -DCMAKE_INSTALL_PREFIX=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_DESTINATION=lib64 -DLIB_SUFFIX=64 -S . -B . -DCMAKE_SKIP_RPATH:BOOL=ON -DBUILD_GUI:BOOL=ON -DPYTHON_BINDINGS:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 10.3.1 -- The CXX compiler identification is GNU 10.3.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:11 (cmake_policy): The OLD behavior for policy CMP0005 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. CMake Deprecation Warning at CMakeLists.txt:13 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Using included inchi library. -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.9.12") -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.13") -- Found wxWidgets: -L/usr/lib64;-pthread;;;-L/usr/lib64;;;-lwx_baseu-2.8;-lwx_gtk2u_core-2.8;-lwx_gtk2u_adv-2.8 (found version "2.8.12") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success -- Use std::shared_ptr in memory -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for module 'cairo' -- Found cairo, version 1.16.0 Package libpcre was not found in the pkg-config search path. Perhaps you should add the directory containing `libpcre.pc' to the PKG_CONFIG_PATH environment variable Package 'libpcre', required by 'glib-2.0', not found Package libpcre was not found in the pkg-config search path. Perhaps you should add the directory containing `libpcre.pc' to the PKG_CONFIG_PATH environment variable Package 'libpcre', required by 'glib-2.0', not found Package libpcre was not found in the pkg-config search path. Perhaps you should add the directory containing `libpcre.pc' to the PKG_CONFIG_PATH environment variable Package 'libpcre', required by 'glib-2.0', not found Package libpcre was not found in the pkg-config search path. Perhaps you should add the directory containing `libpcre.pc' to the PKG_CONFIG_PATH environment variable Package 'libpcre', required by 'glib-2.0', not found -- Found Cairo: /usr/lib64/libcairo.so -- Cairo found. PNG output will be supported. -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built Problem opening /proc/meminfo -- Found PythonInterp: /usr/bin/python3 (found version "3.9.18") CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found PythonLibs: /usr/lib64/libpython3.9.so (found version "3.9.18") -- Python bindings will be compiled -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS CMAKE_SKIP_INSTALL_RPATH INCLUDE_INSTALL_DIR LIB_DESTINATION SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /usr/src/RPM/BUILD/openbabel-2.4.1 + make -j16 VERBOSE=1 make: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' /usr/bin/cmake -S/usr/src/RPM/BUILD/openbabel-2.4.1 -B/usr/src/RPM/BUILD/openbabel-2.4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' /usr/bin/cmake -E cmake_progress_start /usr/src/RPM/BUILD/openbabel-2.4.1/CMakeFiles /usr/src/RPM/BUILD/openbabel-2.4.1//CMakeFiles/progress.marks make: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f CMakeFiles/Makefile2 all make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src /usr/src/RPM/BUILD/openbabel-2.4.1/src/CMakeFiles/openbabel.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.c.o -MF CMakeFiles/inchi.dir/ichiisot.c.o.d -o CMakeFiles/inchi.dir/ichiisot.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiisot.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 0%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.c.o -MF CMakeFiles/inchi.dir/ichi_io.c.o.d -o CMakeFiles/inchi.dir/ichi_io.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_io.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.c.o -MF CMakeFiles/inchi.dir/ichimap1.c.o.d -o CMakeFiles/inchi.dir/ichimap1.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap1.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.c.o -MF CMakeFiles/inchi.dir/ichimak2.c.o.d -o CMakeFiles/inchi.dir/ichimak2.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimak2.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.c.o -MF CMakeFiles/inchi.dir/ichicano.c.o.d -o CMakeFiles/inchi.dir/ichicano.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichicano.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichicano.c: In function 'FillTautLinearCT2': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichicano.c:732:30: warning: variable 'num_num' set but not used [-Wunused-but-set-variable] 732 | int i, j, len=0, g, num_num, offset, max_len = 0, len_iso=0; | ^~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/base.cpp.o -MF CMakeFiles/openbabel.dir/base.cpp.o.d -o CMakeFiles/openbabel.dir/base.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/base.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.c.o -MF CMakeFiles/inchi.dir/ichinorm.c.o.d -o CMakeFiles/inchi.dir/ichinorm.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichinorm.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichinorm.c: In function 'remove_terminal_HDT': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichinorm.c:548:13: warning: variable 'old_trans' set but not used [-Wunused-but-set-variable] 548 | S_CHAR old_trans[MAX_NUM_STEREO_BONDS]; | ^~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 0%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.c.o -MF CMakeFiles/inchi.dir/ichicans.c.o.d -o CMakeFiles/inchi.dir/ichicans.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichicans.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichicans.c: In function 'UnmarkNonStereo': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichicans.c:324:42: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized] 324 | nPrevAtomRank = nRank[j]; | ^ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.c.o -MF CMakeFiles/inchi.dir/ichiparm.c.o.d -o CMakeFiles/inchi.dir/ichiparm.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiparm.c In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiparm.c:76: /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/ichiparm.h: In function 'ReadCommandLineParms': /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/ichiparm.h:100:19: warning: unused variable 'bDisplayCompositeResults' [-Wunused-variable] 100 | int bDisplayCompositeResults = 0; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/ichiparm.h:54:19: warning: variable 'nFontSize' set but not used [-Wunused-but-set-variable] 54 | int nFontSize = -9; | ^~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.c.o -MF CMakeFiles/inchi.dir/ichimake.c.o.d -o CMakeFiles/inchi.dir/ichimake.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimake.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.c.o -MF CMakeFiles/inchi.dir/ichimap4.c.o.d -o CMakeFiles/inchi.dir/ichimap4.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap4.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap4.c: In function 'map_stereo_atoms4': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap4.c:1000:35: warning: variable 'prev_stereo_center_parity' set but not used [-Wunused-but-set-variable] 1000 | int stereo_center_parity, prev_stereo_center_parity, sb_parity_calc, pass; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap4.c: In function 'map_stereo_bonds4': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap4.c:788:33: warning: 'at_to_n2' may be used uninitialized in this function [-Wmaybe-uninitialized] 788 | CurTreeRemoveIfLastAtom( cur_tree, at_to_n2 ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap4.c:863:26: warning: 'at_to_n1' may be used uninitialized in this function [-Wmaybe-uninitialized] 863 | CurTreeRemoveIfLastAtom( cur_tree, at_to_n1 ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.c.o -MF CMakeFiles/inchi.dir/ichimap2.c.o.d -o CMakeFiles/inchi.dir/ichimap2.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap2.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap2.c: In function 'parity_of_mapped_atom2': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap2.c:898:27: warning: variable 'num_trans_from' set but not used [-Wunused-but-set-variable] 898 | int num_trans_to, num_trans_from, neigh1, neigh2; | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap2.c: In function 'BreakNeighborsTie': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap2.c:1228:25: warning: variable 'other_neig_ord' set but not used [-Wunused-but-set-variable] 1228 | int other_neigh[2], other_neig_ord[2], num_other_neigh; | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.c.o -MF CMakeFiles/inchi.dir/ichilnct.c.o.d -o CMakeFiles/inchi.dir/ichilnct.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichilnct.c In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichilnct.c:69: /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/aux2atom.h: In function 'll_INChIToInchi_Atom': /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/aux2atom.h:1024:41: warning: variable 'num_iso_H' set but not used [-Wunused-but-set-variable] 1024 | int num_iso_H; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/aux2atom.h:1220:47: warning: variable 'n' set but not used [-Wunused-but-set-variable] 1220 | int a, n, j, /* k,*/ sb_ord, cur_neigh, min_neigh; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/aux2atom.h:2056:41: warning: variable 'num_iso_H' set but not used [-Wunused-but-set-variable] 2056 | int num_iso_H; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/aux2atom.h:2252:47: warning: variable 'n' set but not used [-Wunused-but-set-variable] 2252 | int a, n, j, /* k,*/ sb_ord, cur_neigh, min_neigh; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichilnct.c: In function 'INChIToInchi_Input': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichilnct.c:206:21: warning: variable 'szCoordOld' set but not used [-Wunused-but-set-variable] 206 | MOL_COORD *szCoordOld = NULL; | ^~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichilnct.c:69: /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/aux2atom.h: In function 'Extract0DParities': /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/aux2atom.h:2731:47: warning: 'sb_ord_from_i1' may be used uninitialized in this function [-Wmaybe-uninitialized] 2731 | at[i1].sb_ord[j1] = sb_ord_from_i1; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.c.o -MF CMakeFiles/inchi.dir/ichiprt2.c.o.d -o CMakeFiles/inchi.dir/ichiprt2.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt2.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt2.c: In function 'MakeIsoTautString': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt2.c:1234:13: warning: variable 'nMax' set but not used [-Wunused-but-set-variable] 1234 | AT_NUMB nMax; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt2.c: In function 'MakeIsoHString': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt2.c:1320:13: warning: variable 'nMax' set but not used [-Wunused-but-set-variable] 1320 | AT_NUMB nMax; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt2.c: In function 'abctol': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt2.c:1505:17: warning: variable 'sign' set but not used [-Wunused-but-set-variable] 1505 | long sign = 1; | ^~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.c.o -MF CMakeFiles/inchi.dir/ichiring.c.o.d -o CMakeFiles/inchi.dir/ichiring.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiring.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/bitvec.cpp.o -MF CMakeFiles/openbabel.dir/bitvec.cpp.o.d -o CMakeFiles/openbabel.dir/bitvec.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/bitvec.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.c.o -MF CMakeFiles/inchi.dir/ichiqueu.c.o.d -o CMakeFiles/inchi.dir/ichiqueu.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiqueu.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiqueu.c: In function 'DFS_FindTautInARing': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiqueu.c:369:18: warning: variable 'nRingSystem' set but not used [-Wunused-but-set-variable] 369 | AT_RANK nRingSystem; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiqueu.c: In function 'DFS_FindTautAltPath': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiqueu.c:486:18: warning: variable 'nRingSystem' set but not used [-Wunused-but-set-variable] 486 | AT_RANK nRingSystem; | ^~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.c.o -MF CMakeFiles/inchi.dir/ichican2.c.o.d -o CMakeFiles/inchi.dir/ichican2.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c: In function 'CtPartFill': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:1250:27: warning: variable 'rj_prev' set but not used [-Wunused-but-set-variable] 1250 | AT_RANK r, rj, nn, j, rj_prev; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c: In function 'CtPartCompare': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:1449:39: warning: variable 'len_iso_sort_key' set but not used [-Wunused-but-set-variable] 1449 | int diff, i, k1, k2, lenNumH, len_iso_sort_key, /*mid_iso_sort_key,*/ midAt; | ^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:1449:26: warning: variable 'k2' set but not used [-Wunused-but-set-variable] 1449 | int diff, i, k1, k2, lenNumH, len_iso_sort_key, /*mid_iso_sort_key,*/ midAt; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:1449:22: warning: variable 'k1' set but not used [-Wunused-but-set-variable] 1449 | int diff, i, k1, k2, lenNumH, len_iso_sort_key, /*mid_iso_sort_key,*/ midAt; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c: In function 'CtFullCompare': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:1839:51: warning: variable 'len_iso_sort_key' set but not used [-Wunused-but-set-variable] 1839 | int len_iso_sort_key1, len_iso_sort_key2, len_iso_sort_key /*, mid_iso_sort_key*/; | ^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:1838:50: warning: variable 'lenNumH' set but not used [-Wunused-but-set-variable] 1838 | int diff, i, k1, k2, lenNumH1, lenNumH2, lenNumH, maxVert /* min num atoms */; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:1837:13: warning: variable 'midAt' set but not used [-Wunused-but-set-variable] 1837 | midAt /* end of atoms only */; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c: In function 'CtPartCopy': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:2079:23: warning: variable 'endAt1' set but not used [-Wunused-but-set-variable] 2079 | int startAt1, endAt1, startAt2, endAt2; /*endCt,*/ | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:2077:33: warning: variable 'endCt1' set but not used [-Wunused-but-set-variable] 2077 | int startCt1, startCt2, endCt1, endCt2; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c: In function 'CanonGraph': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:2965:17: warning: variable 'qzb_rho_temp' set but not used [-Wunused-but-set-variable] 2965 | int qzb_rho_temp = 0; | ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:3074:22: warning: the address of 'kLeast_rho_fix' will always evaluate as 'true' [-Waddress] 3074 | if ( pzb_rho_fix && kLeast_rho_fix && 0 == qzb_rho_fix ) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:3076:14: warning: the address of 'kLeast_rho_fix' will always evaluate as 'true' [-Waddress] 3076 | if ( kLeast_rho_fix ) { | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:3114:10: warning: the address of 'kLeast_rho' will always evaluate as 'true' [-Waddress] 3114 | if ( kLeast_rho ) { | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:3234:10: warning: 'tvh' may be used uninitialized in this function [-Wmaybe-uninitialized] 3234 | GetUnorderedPartitionMcrNode( &theta, tvh ) ) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:3186:8: warning: 'tvc' may be used uninitialized in this function [-Wmaybe-uninitialized] 3186 | if ( tvc == GetUnorderedPartitionMcrNode( &theta, tvc ) ) | ^ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/bond.cpp.o -MF CMakeFiles/openbabel.dir/bond.cpp.o.d -o CMakeFiles/openbabel.dir/bond.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/bond.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -MF CMakeFiles/openbabel.dir/bondtyper.cpp.o.d -o CMakeFiles/openbabel.dir/bondtyper.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/bondtyper.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.c.o -MF CMakeFiles/inchi.dir/ichirvr5.c.o.d -o CMakeFiles/inchi.dir/ichirvr5.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c: In function 'FixMobileHRestoredStructure': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c:286:13: warning: variable 'iat_SB_N_III' set but not used [-Wunused-but-set-variable] 286 | int iat_SB_N_III[MAX_DIFF_MOBH], iat_DB_N_III[MAX_DIFF_MOBH]; | ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c:429:36: warning: variable 'pvEndp2' set but not used [-Wunused-but-set-variable] 429 | BNS_VERTEX *pTg, *pvEndp, *pvEndp2, *pvCent; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c:741:27: warning: variable 'pvEndp' set but not used [-Wunused-but-set-variable] 741 | BNS_VERTEX *pTg, *pvEndp; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c:486:32: warning: 'peCent2' may be used uninitialized in this function [-Wmaybe-uninitialized] 486 | peCent2->flow --; | ~~~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c:490:80: warning: 'peTg2' may be used uninitialized in this function [-Wmaybe-uninitialized] 490 | if ( 1 == peTg->cap - peTg->flow && 0 == peTg2->cap - peTg2->flow && | ~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c:496:67: warning: 'vEndp2' may be used uninitialized in this function [-Wmaybe-uninitialized] 496 | pTCGroups->pTCG[itg].tg_set_Minus = vEndp2+1; | ~~~~~~^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.c.o -MF CMakeFiles/inchi.dir/ichiprt3.c.o.d -o CMakeFiles/inchi.dir/ichiprt3.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c: In function 'str_AuxInvSp3Numb': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c:1400:32: warning: variable 'pINChI_Aux_Prev' set but not used [-Wunused-but-set-variable] 1400 | INChI_Aux *pINChI_Aux, *pINChI_Aux_Prev, *pINChI_Aux_Taut; | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c: In function 'str_AuxIsoNumb': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c:1539:32: warning: variable 'pINChI_Aux_Prev' set but not used [-Wunused-but-set-variable] 1539 | INChI_Aux *pINChI_Aux, *pINChI_Aux_Prev, *pINChI_Aux_Taut; | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c:1538:29: warning: variable 'pINChI_Taut' set but not used [-Wunused-but-set-variable] 1538 | INChI *pINChI, *pINChI_Taut; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c:1538:19: warning: variable 'pINChI' set but not used [-Wunused-but-set-variable] 1538 | INChI *pINChI, *pINChI_Taut; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c: In function 'str_AuxInvIsoSp3Numb': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c:2132:32: warning: variable 'pINChI_Aux_Prev' set but not used [-Wunused-but-set-variable] 2132 | INChI_Aux *pINChI_Aux, *pINChI_Aux_Prev, *pINChI_Aux_Taut; | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.c.o -MF CMakeFiles/inchi.dir/ichiprt1.c.o.d -o CMakeFiles/inchi.dir/ichiprt1.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c: In function 'OutputINChI1': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c:1448:34: warning: variable 'bCurIsoStereo' set but not used [-Wunused-but-set-variable] 1448 | int bCurIso, bCurStereo, bCurIsoStereo, bCurHasIsoStereo /* Fix14 */, bCurTaut /*, bCurTaut2*/; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c:1448:22: warning: variable 'bCurStereo' set but not used [-Wunused-but-set-variable] 1448 | int bCurIso, bCurStereo, bCurIsoStereo, bCurHasIsoStereo /* Fix14 */, bCurTaut /*, bCurTaut2*/; | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c:1269:10: warning: variable 'bPlainTabbedOutput' set but not used [-Wunused-but-set-variable] 1269 | int bPlainTabbedOutput; | ^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c:1258:30: warning: variable 'max_num_comp' set but not used [-Wunused-but-set-variable] 1258 | int num_comp[TAUT_NUM], max_num_comp; | ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c: In function 'WriteOrigBonds': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c:3808:95: warning: variable 'num_trans' set but not used [-Wunused-but-set-variable] 3808 | int j, k, k2, kk, len, cur_len, j2=0, bond_stereo, bond_char, bond_parity, bond_parityNM, num_trans; | ^~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.c.o -MF CMakeFiles/inchi.dir/ichirvr1.c.o.d -o CMakeFiles/inchi.dir/ichirvr1.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'GetTgroupInfoFromInChI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:569:16: warning: variable 'tiSymmRank' set but not used [-Wunused-but-set-variable] 569 | AT_NUMB *tiSymmRank = NULL; | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:568:16: warning: variable 'tSymmRank' set but not used [-Wunused-but-set-variable] 568 | AT_NUMB *tSymmRank = NULL; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:566:47: warning: variable 'bIso' set but not used [-Wunused-but-set-variable] 566 | int ret, i, j, k, itg, num_atoms, len_tg, bIso, num_t_groups; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'GetAtomRestoreInfo': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:853:9: warning: variable 'nLastFoundValenceOrdNumber' set but not used [-Wunused-but-set-variable] 853 | int nLastFoundValenceOrdNumber, nLastFoundValenceState; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:852:37: warning: variable 'nFoundNeutralValenceOrdNumber' set but not used [-Wunused-but-set-variable] 852 | int nFoundNeutralValenceExcess, nFoundNeutralValenceOrdNumber; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:851:37: warning: variable 'nFirstNeutralValenceExcess' set but not used [-Wunused-but-set-variable] 851 | int nOctetNeutralValenceExcess, nFirstNeutralValenceExcess; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:851:9: warning: variable 'nOctetNeutralValenceExcess' set but not used [-Wunused-but-set-variable] 851 | int nOctetNeutralValenceExcess, nFirstNeutralValenceExcess; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:849:46: warning: variable 'num_non_bonding_electrons' set but not used [-Wunused-but-set-variable] 849 | int i, j, j2, k, k2, charge, cur_charge, num_non_bonding_electrons; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:849:26: warning: variable 'charge' set but not used [-Wunused-but-set-variable] 849 | int i, j, j2, k, k2, charge, cur_charge, num_non_bonding_electrons; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'nCountBnsSizes': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:1687:39: warning: variable 'metal_group_number' set but not used [-Wunused-but-set-variable] 1687 | int type, neigh_type, metal_group_number; | ^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'AddRadicalToMetal': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2310:39: warning: variable 'pG2' set but not used [-Wunused-but-set-variable] 2310 | BNS_VERTEX *pG0=NULL, *pG1=NULL, *pG2=NULL, *pG3=NULL; | ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2310:28: warning: variable 'pG1' set but not used [-Wunused-but-set-variable] 2310 | BNS_VERTEX *pG0=NULL, *pG1=NULL, *pG2=NULL, *pG3=NULL; | ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2310:17: warning: variable 'pG0' set but not used [-Wunused-but-set-variable] 2310 | BNS_VERTEX *pG0=NULL, *pG1=NULL, *pG2=NULL, *pG3=NULL; | ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'AddCGroups2TCGBnStruct': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2793:20: warning: variable 'nMaxCGroupNumber' set but not used [-Wunused-but-set-variable] 2793 | int nMaxCGroupNumber = 0; | ^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2788:39: warning: variable 'j2' set but not used [-Wunused-but-set-variable] 2788 | int i, i1, i2, j, j1, j2, k, k1, k2, n, c_point, c_neigh, cap, flow; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2788:35: warning: variable 'j1' set but not used [-Wunused-but-set-variable] 2788 | int i, i1, i2, j, j1, j2, k, k1, k2, n, c_point, c_neigh, cap, flow; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2774:24: warning: variable 'ret2' set but not used [-Wunused-but-set-variable] 2774 | int ret = 0, ret1, ret2, ret3, bNeedsFlower; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2774:18: warning: variable 'ret1' set but not used [-Wunused-but-set-variable] 2774 | int ret = 0, ret1, ret2, ret3, bNeedsFlower; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'AllocateAndInitTCGBnStruct': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:3278:9: warning: variable 'max_tg' set but not used [-Wunused-but-set-variable] 3278 | int max_tg, max_edges, max_vertices, len_alt_path, max_iedges, num_iedges, num_altp; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:3276:63: warning: variable 'flag_alt_bond' set but not used [-Wunused-but-set-variable] 3276 | int f1, f2, c1, c2, edge_cap, edge_flow, st_cap, st_flow, flag_alt_bond; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'EvaluateChargeChanges': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:3627:27: warning: variable 'v0' set but not used [-Wunused-but-set-variable] 3627 | int pass, i, j, v0, v1, v2, v, ineigh1, /*ineigh2,*/ vLast, n, delta, ret, ie, err = 0; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'RunBnsTestOnce': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:3786:21: warning: variable 'ret2' set but not used [-Wunused-but-set-variable] 3786 | int delta, ret, ret2, pass; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'DisconnectedConnectedH': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:4609:31: warning: variable 'num_iso_H' set but not used [-Wunused-but-set-variable] 4609 | int i, j, k, n, m, num_H, num_iso_H; | ^~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichisort.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichisort.c.o -MF CMakeFiles/inchi.dir/ichisort.c.o.d -o CMakeFiles/inchi.dir/ichisort.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichisort.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 0%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.c.o -MF CMakeFiles/inchi.dir/ichi_bns.c.o.d -o CMakeFiles/inchi.dir/ichi_bns.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'SubtractOrChangeAtHChargeBNS': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:928:21: warning: variable 'type' set but not used [-Wunused-but-set-variable] 928 | int mask, type; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'MarkAtomsAtTautGroups': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:1121:44: warning: variable 'ineigh2' set but not used [-Wunused-but-set-variable] 1121 | int pass, i, j, v1, v2, ineigh1, ineigh2, vLast, vFirst, n, delta, err = 0; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'RestoreBnStructFlow': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:1272:41: warning: variable 'ineigh2' set but not used [-Wunused-but-set-variable] 1272 | int pass, i, v1, v2, ineigh1, ineigh2, vLast, n, delta, ret, err = 0; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'BnsTestAndMarkAltBonds': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:1524:16: warning: variable 'bSuccess' set but not used [-Wunused-but-set-variable] 1524 | int iedge, bSuccess, bError, nDots, nChanges, bTestForNonStereoBond; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'fix_special_bonds': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:1814:27: warning: variable 'n4' set but not used [-Wunused-but-set-variable] 1814 | int i, k, n1, n2, n3, n4, i1, i2, i3, i4, bond_type; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'is_Z_atom': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:2295:7: warning: typedef 'Z_ELNUMBER' locally defined but not used [-Wunused-local-typedefs] 2295 | } Z_ELNUMBER; | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'mark_alt_bonds_and_taut_groups': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:4236:10: warning: variable 'nOrigDelta' set but not used [-Wunused-but-set-variable] 4236 | int nOrigDelta, num_changed_bonds; | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'SetRadEndpoints': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:6438:23: warning: variable 'num_new_edges' set but not used [-Wunused-but-set-variable] 6438 | int ret, i, j, k, num_new_edges, delta; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'SetRadEndpoints2': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:6522:30: warning: variable 'num_new_edges' set but not used [-Wunused-but-set-variable] 6522 | int ret = 0, i, j, k, n, num_new_edges, delta = 1; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'EliminatePlusMinusChargeAmbiguity': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:768:56: warning: 'cgNeg' may be used uninitialized in this function [-Wmaybe-uninitialized] 768 | pBNS->vert[cgNeg].st_edge.cap -= dflow; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:764:56: warning: 'cgPos' may be used uninitialized in this function [-Wmaybe-uninitialized] 764 | pBNS->vert[cgPos].st_edge.cap += dflow; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'fix_special_bonds': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:1923:61: warning: 'k_N' may be used uninitialized in this function [-Wmaybe-uninitialized] 1923 | BOND_TYPE_DOUBLE == (at[i].bond_type[i1=j[k_N]] & BOND_TYPE_MASK ) ) { | ~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:1959:48: warning: 'i2' may be used uninitialized in this function [-Wmaybe-uninitialized] 1959 | iedge = pBNS->vert[i].iedge[i2]; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:2062:38: warning: 'n2' may be used uninitialized in this function [-Wmaybe-uninitialized] 2062 | 0 <= ( i4 = nNoMetalOtherNeighIndex2( at, i, n2, n3) ) ) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr4.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr4.c.o -MF CMakeFiles/inchi.dir/ichirvr4.c.o.d -o CMakeFiles/inchi.dir/ichirvr4.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c: In function 'FixMoreHydrogenInFormula': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:383:23: warning: operation on 'neigh' may be undefined [-Wsequence-point] 383 | at2[neigh=at2[i].neighbor[0]].chem_bonds_valence > at2[neigh].valence | ~~~~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c: In function 'MoveChargeToRemoveCenerpoints': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:1512:39: warning: variable 'DoubleBondAcceptors' set but not used [-Wunused-but-set-variable] 1512 | S_CHAR MobileChargeNeigh[MAXVAL], DoubleBondAcceptors[MAXVAL], DoubleBondNotONeigh[MAXVAL]; | ^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:1504:22: warning: variable 'num_endpoints' set but not used [-Wunused-but-set-variable] 1504 | int i, j, neigh, num_endpoints, num_success; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c: In function 'AddRemProtonsInRestrStruct': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:2932:25: warning: variable 'tot_num_at' set but not used [-Wunused-but-set-variable] 2932 | int num_atoms, tot_num_at, num_deleted_H, num_tg, num_changed, num_deleted_components; | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c: In function 'AddRemIsoProtonsInRestrStruct': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:3134:45: warning: the address of 'num_prot' will always evaluate as 'true' [-Waddress] 3134 | for ( iComp = 0; iComp < num_components && num_prot; iComp ++ ) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:3102:16: warning: variable 'bNormalizationFlags' set but not used [-Wunused-but-set-variable] 3102 | INCHI_MODE bNormalizationFlags; | ^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:3101:16: warning: variable 'pINChI' set but not used [-Wunused-but-set-variable] 3101 | INChI *pINChI; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:3096:25: warning: variable 'tot_num_at' set but not used [-Wunused-but-set-variable] 3096 | int num_atoms, tot_num_at, num_deleted_H, num_tg, num_changed; | ^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.c.o -MF CMakeFiles/inchi.dir/ikey_base26.c.o.d -o CMakeFiles/inchi.dir/ikey_base26.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ikey_base26.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/atom.cpp.o -MF CMakeFiles/openbabel.dir/atom.cpp.o.d -o CMakeFiles/openbabel.dir/atom.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/atom.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/atom.cpp: In member function 'int OpenBabel::OBAtom::HighestBondOrder()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/atom.cpp:306:24: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 306 | if(bond->GetBO() > highest) | ~~~~~~~~~~~~~~^~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.c.o -MF CMakeFiles/inchi.dir/ichirvr6.c.o.d -o CMakeFiles/inchi.dir/ichirvr6.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr6.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr6.c: In function 'FixRestoredStructureStereo': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr6.c:361:35: warning: variable 'cmpInChI2_Prev' set but not used [-Wunused-but-set-variable] 361 | INCHI_MODE cmpInChI_Prev, cmpInChI2_Prev; | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr6.c:361:20: warning: variable 'cmpInChI_Prev' set but not used [-Wunused-but-set-variable] 361 | INCHI_MODE cmpInChI_Prev, cmpInChI2_Prev; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr6.c:1140:17: warning: variable 'aC' set but not used [-Wunused-but-set-variable] 1140 | int aN, aC, i1, i2, ePlus; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr6.c:1013:41: warning: 'pe' may be used uninitialized in this function [-Wmaybe-uninitialized] 1013 | pe->flow -= delta; /* make single bond */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr6.c:1020:25: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] 1020 | if ( (ret = AddToEdgeList( &AllChargeEdges, e, INC_ADD_EDGE )) ) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.c.o -MF CMakeFiles/inchi.dir/ikey_dll.c.o.d -o CMakeFiles/inchi.dir/ikey_dll.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ikey_dll.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ikey_dll.c: In function 'GetINCHIKeyFromINCHI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ikey_dll.c:265:9: warning: "/*" within comment [-Wcomment] 265 | /* source string ( was sproto[ncp]='\0'; should be sproto[lenproto]='\0'; ) */ | /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ikey_dll.c:141:8: warning: unused variable 'bytelen' [-Wunused-variable] 141 | size_t bytelen = 32; | ^~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/chargemodel.cpp.o -MF CMakeFiles/openbabel.dir/chargemodel.cpp.o.d -o CMakeFiles/openbabel.dir/chargemodel.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/chargemodel.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.c.o -MF CMakeFiles/inchi.dir/ichirvr7.c.o.d -o CMakeFiles/inchi.dir/ichirvr7.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr7.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr7.c: In function 'CompareAllOrigInchiToRevInChI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr7.c:1046:33: warning: variable 'iMobileHpStruct' set but not used [-Wunused-but-set-variable] 1046 | int i, iInchiRec, iMobileH, iMobileHpStruct, num_components, iComponent, ret=0; | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.c.o -MF CMakeFiles/inchi.dir/inchi_dll_a.c.o.d -o CMakeFiles/inchi.dir/inchi_dll_a.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a.c: In function 'STDINCHIGEN_Setup': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a.c:171:5: warning: unused variable 'force_std' [-Wunused-variable] 171 | int force_std=0; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a.c: In function 'INCHIGEN_DoNormalization': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a.c:612:22: warning: variable 'ret2a' set but not used [-Wunused-but-set-variable] 612 | int ret1a=0, ret2a=0; /* for derivatives and ring-chain */ | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a.c:612:13: warning: variable 'ret1a' set but not used [-Wunused-but-set-variable] 612 | int ret1a=0, ret2a=0; /* for derivatives and ring-chain */ | ^~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.c.o -MF CMakeFiles/inchi.dir/inchi_dll_main.c.o.d -o CMakeFiles/inchi.dir/inchi_dll_main.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_main.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/alias.cpp.o -MF CMakeFiles/openbabel.dir/alias.cpp.o.d -o CMakeFiles/openbabel.dir/alias.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/alias.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.c.o -MF CMakeFiles/inchi.dir/inchi_dll.c.o.d -o CMakeFiles/inchi.dir/inchi_dll.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll.c: In function 'GetStructFromINCHI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll.c:2100:9: warning: variable 'bStdFormat' set but not used [-Wunused-but-set-variable] 2100 | int bStdFormat = 0; | ^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/chiral.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/chiral.cpp.o -MF CMakeFiles/openbabel.dir/chiral.cpp.o.d -o CMakeFiles/openbabel.dir/chiral.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/chiral.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.c.o -MF CMakeFiles/inchi.dir/ichiread.c.o.d -o CMakeFiles/inchi.dir/ichiread.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'ReadWriteInChI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:1040:22: warning: the address of 'szMessage' will always evaluate as 'true' [-Waddress] 1040 | if ( szMessage ) | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:1074:55: warning: variable 'len' set but not used [-Wunused-but-set-variable] 1074 | int iRec, iMob, iComp, nComp, len; | ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:489:17: warning: variable 'pTAB' set but not used [-Wunused-but-set-variable] 489 | const char *pTAB; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:488:10: warning: variable 'bPlainTabbedOutput' set but not used [-Wunused-but-set-variable] 488 | int bPlainTabbedOutput; | ^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:480:18: warning: variable 'bStereoType' set but not used [-Wunused-but-set-variable] 480 | int pState, bStereoType; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'OutputInChIAsRequested': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:1414:53: warning: variable 'iINChI2' set but not used [-Wunused-but-set-variable] 1414 | int j, k, k1, k2, ret2=0, iINChI, iINChI1, iINChI2; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'InChILine2Data': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:2304:51: warning: variable 'retAux' set but not used [-Wunused-but-set-variable] 2304 | int iINChI, i, j, k, m, len1, len2, ret2 = 0, retAux = 0, stateAux = 0; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'ReadInChICoord': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:4032:14: warning: variable 'fst' set but not used [-Wunused-but-set-variable] 4032 | int c, fst, ret=RI_ERR_ALLOC; | ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'ReadInChILine': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:4302:14: warning: variable 'fst' set but not used [-Wunused-but-set-variable] 4302 | int c, fst, ret=RI_ERR_ALLOC, len; | ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'ParseSegmentMobileH': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:6395:10: warning: variable 'num_open' set but not used [-Wunused-but-set-variable] 6395 | int num_open, state, ret, nAltMobileH = ALT_TAUT(bMobileH); | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:6392:37: warning: variable 'nNumBonds' set but not used [-Wunused-but-set-variable] 6392 | int nNumComponents, iComponent, nNumBonds, lenTautomer, tg_pos_Tautomer, iTGroup; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'ParseSegmentConnections': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:6989:73: warning: variable 'iBond' set but not used [-Wunused-but-set-variable] 6989 | int nNumComponents, iComponent, nNumAtoms, nNumBonds, lenConnTable, iBond; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'ParseSegmentIsoAtoms': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:5152:55: warning: 'len' may be used uninitialized in this function [-Wmaybe-uninitialized] 5152 | pInChI[iComponent].nNumberOfIsotopicAtoms = len; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'ParseSegmentConnections.constprop': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:7430:13: warning: 'LB.pBond' may be used uninitialized in this function [-Wmaybe-uninitialized] 7430 | if ( pLB->pBond ) { | ~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:7430:13: warning: 'LB.pBond' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:7430:13: warning: 'LB.pBond' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'InChILine2Data': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:4431:44: warning: 'let2' may be used uninitialized in this function [-Wmaybe-uninitialized] 4431 | if ( let2=='C' || let2=='D' ) | ~~~~~~~~~~^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:4311:25: note: 'let2' was declared here 4311 | unsigned char let1, let2; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:4420:41: warning: 'let1' may be used uninitialized in this function [-Wmaybe-uninitialized] 4420 | if ( a2p[k] == let1) /* letter-1 OK */ | ~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:4311:19: note: 'let1' was declared here 4311 | unsigned char let1, let2; | ^~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr2.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr2.c.o -MF CMakeFiles/inchi.dir/ichirvr2.c.o.d -o CMakeFiles/inchi.dir/ichirvr2.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'RestoreAtomConnectionsSetStereo': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:260:24: warning: operation on 'jv' may be undefined [-Wsequence-point] 260 | at[jv = at[n_vertex].neighbor[0]].valence + at[jv].num_H == 3 && | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:262:24: warning: operation on 'jn' may be undefined [-Wsequence-point] 262 | at[jn = at[n_vertex].neighbor[1]].valence + at[jn].num_H == 3 && | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:116:19: warning: variable 'num_stereo_bonds' set but not used [-Wunused-but-set-variable] 116 | int num_stereo_bonds, num_stereo_centers, num_stereo_bonds2, num_stereo_centers2; | ^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'AdjustTgroupsToForbiddenEdges2': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:2351:23: warning: variable 'ie' set but not used [-Wunused-but-set-variable] 2351 | EdgeIndex ie, ie1, ie2; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:2455:23: warning: variable 'ie' set but not used [-Wunused-but-set-variable] 2455 | EdgeIndex ie, ie1, ie2; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:1664:20: warning: variable 'bonds_valence' set but not used [-Wunused-but-set-variable] 1664 | int num_bonds, bonds_valence; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:1664:9: warning: variable 'num_bonds' set but not used [-Wunused-but-set-variable] 1664 | int num_bonds, bonds_valence; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'MovePlusFromS2DiaminoCarbon': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:3027:19: warning: operation on 'pvS' may be undefined [-Wsequence-point] 3027 | (pvS = pBNS->vert+i)->st_edge.cap == pvS->st_edge.flow && | ~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'FixMetal_Nminus_Ominus': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:4002:44: warning: variable 'nDeltaChargeMax' set but not used [-Wunused-but-set-variable] 4002 | int num_failed, num_success, n, nDeltaChargeMax, nMetalCharge; | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'EliminateNitrogen5Val3Bonds': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:4765:31: warning: variable 'pv1' set but not used [-Wunused-but-set-variable] 4765 | BNS_VERTEX *pv0, *pv1, *pv2 = NULL; | ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:4764:59: warning: variable 'ie01' set but not used [-Wunused-but-set-variable] 4764 | EdgeIndex iePlus, ie, ie12 = NO_VERTEX, ie02, ie01; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:4764:53: warning: variable 'ie02' set but not used [-Wunused-but-set-variable] 4764 | EdgeIndex iePlus, ie, ie12 = NO_VERTEX, ie02, ie01; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'PlusFromDB_N_DB_O_to_Metal': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:5066:21: warning: variable 'bForbiddenCarbonCharges' set but not used [-Wunused-but-set-variable] 5066 | int i, j, k, n, bForbiddenCarbonCharges, delta, ret2, ret, num_NO, num_M; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'RemoveRadFromMobileHEndpoint': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:5272:17: warning: variable 'tgroup_number' set but not used [-Wunused-but-set-variable] 5272 | int tgroup_number, num_endpoints; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'RemoveRadFromMobileHEndpointFixH': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:5638:18: warning: variable 'tgroup_number' set but not used [-Wunused-but-set-variable] 5638 | int tgroup_number, num_endpoints; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:5633:34: warning: variable 'num_endp' set but not used [-Wunused-but-set-variable] 5633 | int itg, j, k, n, m, num_endp; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'AdjustTgroupsToForbiddenEdges2': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:2521:23: warning: 'ev1' may be used uninitialized in this function [-Wmaybe-uninitialized] 2521 | ev1->flow --; | ~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:2680:20: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] 2680 | if ( !e->flow ) { | ~^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a2.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a2.c.o -MF CMakeFiles/inchi.dir/inchi_dll_a2.c.o.d -o CMakeFiles/inchi.dir/inchi_dll_a2.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c: In function 'NormOneStructureINChI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c:399:18: warning: unused variable 'res' [-Wunused-variable] 399 | int res = CreateCompositeNormAtom( composite_norm_data, | ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c: In function 'CanonOneStructureINChI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c:448:15: warning: unused variable 'pINChI_Aux2' [-Wunused-variable] 448 | PINChI_Aux2 **pINChI_Aux2 = genctl->pINChI_Aux; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c:447:11: warning: unused variable 'pINChI2' [-Wunused-variable] 447 | PINChI2 **pINChI2 = genctl->pINChI; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c: In function 'Normalization_step': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c:1369:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 1369 | (0 < NUM_H_ISOTOPES && t_group_info->tni.nNumRemovedProtonsIsotopic[0] || | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c: In function 'CreateCompositeNormAtom': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c:1803:74: warning: variable 'nNumRemovedProtons' set but not used [-Wunused-but-set-variable] 1803 | int i, j, jj, k, n, m, tot_num_at, tot_num_H, cur_num_at, cur_num_H, nNumRemovedProtons; | ^~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/runichi.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/runichi.c.o -MF CMakeFiles/inchi.dir/runichi.c.o.d -o CMakeFiles/inchi.dir/runichi.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c: In function 'SortAndPrintINChI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c:769:9: warning: unused variable 'ikflag' [-Wunused-variable] 769 | int ikflag = 0; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c:764:33: warning: variable 'iINChI' set but not used [-Wunused-but-set-variable] 764 | int j, i, k, k1, ret, iINChI, max_num_components; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c: In function 'ProcessOneStructure': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c:2815:26: warning: variable 'ret2a' set but not used [-Wunused-but-set-variable] 2815 | int ret1a=0, ret2a=0; /* for derivatives and ring-chain */ | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c:2815:17: warning: variable 'ret1a' set but not used [-Wunused-but-set-variable] 2815 | int ret1a=0, ret2a=0; /* for derivatives and ring-chain */ | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c:2758:36: warning: variable 'maxINChI' set but not used [-Wunused-but-set-variable] 2758 | int nRet = 0, nRet1, i, k, maxINChI=0; | ^~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichister.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichister.c.o -MF CMakeFiles/inchi.dir/ichister.c.o.d -o CMakeFiles/inchi.dir/ichister.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c: In function 'are_3_vect_in_one_plane': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:987:12: warning: variable 'prod' set but not used [-Wunused-but-set-variable] 987 | double prod; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c: In function 'are_4at_in_one_plane': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:996:25: warning: variable 'prod' set but not used [-Wunused-but-set-variable] 996 | double coord[3][3], prod; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c: In function 'FixSb0DParities': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:1568:27: warning: variable 'at_i2' set but not used [-Wunused-but-set-variable] 1568 | int at_i1, at_i2, j; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:1568:20: warning: variable 'at_i1' set but not used [-Wunused-but-set-variable] 1568 | int at_i1, at_i2, j; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c: In function 'set_stereo_bonds_parity': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:2383:15: warning: variable 'next_at_1' set but not used [-Wunused-but-set-variable] 2383 | int j, k, next_at_1, i_next_at_1, i_next_at_2, at_2, next_at_2, num_stereo_bonds, bFound, bAllene; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c: In function 'set_stereo_parity': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:469:34: warning: 'first_Up' may be used uninitialized in this function [-Wmaybe-uninitialized] 469 | next2 = (first_Up+nNumNeigh - i - 1 ) % nNumNeigh; /* the 2nd before Up sequence */ | ~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:340:69: note: 'first_Up' was declared here 340 | int i, num_Up, num_Dn, bPrev_Up, cur_len_Up, cur_first_Up, len_Up, first_Up; | ^~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.c.o -MF CMakeFiles/inchi.dir/ichitaut.c.o.d -o CMakeFiles/inchi.dir/ichitaut.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c: In function 'GetOtherSaltType': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c:1970:33: warning: variable 'bond_type' set but not used [-Wunused-but-set-variable] 1970 | int type, endpoint_valence, bond_type, centerpoint; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c: In function 'MarkTautomerGroups': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c:3588:30: warning: the address of 'DfsPath' will always evaluate as 'true' [-Waddress] 3588 | if ( !nDfsPathPos || !DfsPath ) { | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c:3237:18: warning: variable 'max_num_t' set but not used [-Wunused-but-set-variable] 3237 | int *pnum_t, max_num_t, bIgnoreIsotopic; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c:3237:10: warning: variable 'pnum_t' set but not used [-Wunused-but-set-variable] 3237 | int *pnum_t, max_num_t, bIgnoreIsotopic; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c:3234:10: warning: variable 'bTautBond' set but not used [-Wunused-but-set-variable] 3234 | int bTautBond, bNonTautBond, bAltBond; | ^~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/sha2.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/sha2.c.o -MF CMakeFiles/inchi.dir/sha2.c.o.d -o CMakeFiles/inchi.dir/sha2.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/sha2.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 11%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/util.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/util.c.o -MF CMakeFiles/inchi.dir/util.c.o.d -o CMakeFiles/inchi.dir/util.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/util.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/util.c: In function 'get_num_H': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/util.c:532:46: warning: variable 'el_number_O' set but not used [-Wunused-but-set-variable] 532 | static int el_number_N = 0, el_number_S, el_number_O, el_number_C; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/util.c: In function 'nBondsValToMetal': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/util.c:782:12: warning: variable 'neigh' set but not used [-Wunused-but-set-variable] 782 | int i, neigh, bond_type, nVal2Metal = 0; | ^~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.c.o -MF CMakeFiles/inchi.dir/ichirvr3.c.o.d -o CMakeFiles/inchi.dir/ichirvr3.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c: In function 'FillTgDiffHChgFH': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:133:25: warning: variable 'itg_prev' set but not used [-Wunused-but-set-variable] 133 | int i, j, iat, itg, itg_prev, num, itg_out, bOverflow; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c: In function 'FixFixedHRestoredStructure': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:423:15: warning: variable 'iat_DB_O' set but not used [-Wunused-but-set-variable] 423 | short iat_DB_O[MAX_DIFF_FIXH], iat_SB_O_Minus[MAX_DIFF_FIXH]; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:530:15: warning: variable 'iat_DB_O_Plus' set but not used [-Wunused-but-set-variable] 530 | short iat_DB_O_Plus[MAX_DIFF_FIXH], iat_SB_NH[MAX_DIFF_FIXH]; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:662:46: warning: variable 'iat_DB_O' set but not used [-Wunused-but-set-variable] 662 | short iat_SB_N_Minus[MAX_DIFF_FIXH], iat_DB_O[MAX_DIFF_FIXH]; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:791:46: warning: variable 'iat_DB_O' set but not used [-Wunused-but-set-variable] 791 | short iat_SB_N_Minus[MAX_DIFF_FIXH], iat_DB_O[MAX_DIFF_FIXH]; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:907:44: warning: variable 'iat_DB_Charged' set but not used [-Wunused-but-set-variable] 907 | short iat_SB_Neutr[MAX_DIFF_FIXH], iat_DB_Charged[MAX_DIFF_FIXH]; | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:1028:15: warning: variable 'iat_DB_O' set but not used [-Wunused-but-set-variable] 1028 | short iat_DB_O[MAX_DIFF_FIXH], iat_SB_NH[MAX_DIFF_FIXH]; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:1416:15: warning: variable 'iat_DB_NHn_Plus' set but not used [-Wunused-but-set-variable] 1416 | short iat_DB_NHn_Plus[MAX_DIFF_FIXH], iat_SB_NHm_Neutr[MAX_DIFF_FIXH]; | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:1969:46: warning: variable 'iat_DB_O_Neutr' set but not used [-Wunused-but-set-variable] 1969 | short iat_SB_O_Minus[MAX_DIFF_FIXH], iat_DB_O_Neutr[MAX_DIFF_FIXH]; | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:2090:46: warning: variable 'iat_DB_O_Neutr' set but not used [-Wunused-but-set-variable] 2090 | short iat_SB_O_Minus[MAX_DIFF_FIXH], iat_DB_O_Neutr[MAX_DIFF_FIXH]; | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:2212:15: warning: variable 'iat_DB_N_Neutr' set but not used [-Wunused-but-set-variable] 2212 | short iat_DB_N_Neutr[MAX_DIFF_FIXH], iat_SB_O_Minus[MAX_DIFF_FIXH]; | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:2351:47: warning: variable 'icNH2' set but not used [-Wunused-but-set-variable] 2351 | int iNH2, iatC, iatNH2, icNH2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:2488:47: warning: variable 'icNH2' set but not used [-Wunused-but-set-variable] 2488 | int iNH2, iatC, iatNH2, icNH2, j1, j2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:2619:15: warning: variable 'iat_SB_Neutr' set but not used [-Wunused-but-set-variable] 2619 | short iat_SB_Neutr[MAX_DIFF_FIXH], iat_DB_Charged[MAX_DIFF_FIXH]; | ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:2808:19: warning: variable 'iat_SB_N_Neutr' set but not used [-Wunused-but-set-variable] 2808 | short iat_SB_N_Neutr[MAX_DIFF_FIXH], iat_DB_O[MAX_DIFF_FIXH]; | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:3006:23: warning: variable 'iat_SB_N_Neutr' set but not used [-Wunused-but-set-variable] 3006 | short iat_SB_N_Neutr[MAX_DIFF_FIXH], iat_DB_O[MAX_DIFF_FIXH]; | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:3424:15: warning: variable 'iat_SB_Neutr' set but not used [-Wunused-but-set-variable] 3424 | short iat_SB_Neutr[MAX_DIFF_FIXH], iat_DB_Charged[MAX_DIFF_FIXH]; | ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:3570:46: warning: variable 'iat_DB_O_Neutr' set but not used [-Wunused-but-set-variable] 3570 | short iat_SB_N_Minus[MAX_DIFF_FIXH], iat_DB_O_Neutr[MAX_DIFF_FIXH]; | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:3709:15: warning: variable 'iat_SB_Neutr' set but not used [-Wunused-but-set-variable] 3709 | short iat_SB_Neutr[MAX_DIFF_FIXH], iat_DB_Charged[MAX_DIFF_FIXH]; | ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:4114:46: warning: variable 'iat_DB_N' set but not used [-Wunused-but-set-variable] 4114 | short iat_SB_O_Minus[MAX_DIFF_FIXH], iat_DB_N[MAX_DIFF_FIXH]; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:4263:74: warning: variable 'iat_DB_O' set but not used [-Wunused-but-set-variable] 4263 | short iat_SB_O_Minus[MAX_DIFF_FIXH], iat_Central[MAX_DIFF_FIXH], iat_DB_O[MAX_DIFF_FIXH]; | ^~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/data_utilities.cpp.o -MF CMakeFiles/openbabel.dir/data_utilities.cpp.o.d -o CMakeFiles/openbabel.dir/data_utilities.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/data_utilities.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/data_utilities.cpp: In function 'bool OpenBabel::extract_thermochemistry(OpenBabel::OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/data_utilities.cpp:125:26: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 125 | for(int i = 0; (i&, unsigned int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprint.cpp:161:48: warning: operation on 'ppat' may be undefined [-Wsequence-point] 161 | if ( (a=((*ppat) & (*p++)) ^ (*ppat++)) ) break; | ~~~~^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprint.cpp:161:48: warning: operation on 'ppat' may be undefined [-Wsequence-point] make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/locale.cpp.o -MF CMakeFiles/openbabel.dir/locale.cpp.o.d -o CMakeFiles/openbabel.dir/locale.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/locale.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF CMakeFiles/openbabel.dir/builder.cpp.o.d -o CMakeFiles/openbabel.dir/builder.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/builder.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/builder.cpp:188:7: 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function [-Wmaybe-uninitialized] 1060 | match_indices[0] = match_idx; make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/descriptor.cpp.o -MF CMakeFiles/openbabel.dir/descriptor.cpp.o.d -o CMakeFiles/openbabel.dir/descriptor.cpp.o -c 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Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 11%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/strutil.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/strutil.c.o -MF CMakeFiles/inchi.dir/strutil.c.o.d -o CMakeFiles/inchi.dir/strutil.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'fix_odd_things': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:138:20: warning: variable 'el_number_O' set but not used [-Wunused-but-set-variable] 138 | static int el_number_O; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:135:20: warning: variable 'el_number_P' set but not used [-Wunused-but-set-variable] 135 | static int el_number_P; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'nFindOneOM': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:792:18: warning: variable 'n_OM_best' set but not used [-Wunused-but-set-variable] 792 | int i, n_OM, n_OM_best, best_value, cur_value, diff; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'RemoveInpAtBond': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:1774:27: warning: variable 'k2' set but not used [-Wunused-but-set-variable] 1774 | int i, j, m, m2, k2; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'bHeteroAtomMayHaveXchgIsoH': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3104:76: warning: variable 'cur_num_iso_H' set but not used [-Wunused-but-set-variable] 3104 | int j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, cur_num_iso_H; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3104:34: warning: variable 'is_N' set but not used [-Wunused-but-set-variable] 3104 | int j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, cur_num_iso_H; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3104:25: warning: variable 'is_Cl' set but not used [-Wunused-but-set-variable] 3104 | int j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, cur_num_iso_H; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3104:17: warning: variable 'is_O' set but not used [-Wunused-but-set-variable] 3104 | int j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, cur_num_iso_H; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'bNumHeterAtomHasIsotopicH': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3181:37: warning: variable 'is_N' set but not used [-Wunused-but-set-variable] 3181 | int i, j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, num_iso_H, cur_num_iso_H, num_iso_atoms; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3181:28: warning: variable 'is_Cl' set but not used [-Wunused-but-set-variable] 3181 | int i, j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, num_iso_H, cur_num_iso_H, num_iso_atoms; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3181:20: warning: variable 'is_O' set but not used [-Wunused-but-set-variable] 3181 | int i, j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, num_iso_H, cur_num_iso_H, num_iso_atoms; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'WriteOrigAtomDataToSDfile': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3814 | #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3821:55: note: in expansion of macro 'IS_DEUTERIUM' 3821 | #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ | ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4281:38: note: in expansion of macro 'ANY_ISO' 4281 | nNumIsoLines += ANY_ISO(i, bAtomsDT); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3815 | #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3821:75: note: in expansion of macro 'IS_TRITIUM' 3821 | #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4281:38: note: in expansion of macro 'ANY_ISO' 4281 | nNumIsoLines += ANY_ISO(i, bAtomsDT); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3814 | #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3822:55: note: in expansion of macro 'IS_DEUTERIUM' 3822 | (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) | ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4281:38: note: in expansion of macro 'ANY_ISO' 4281 | nNumIsoLines += ANY_ISO(i, bAtomsDT); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3815 | #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3822:75: note: in expansion of macro 'IS_TRITIUM' 3822 | (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4281:38: note: in expansion of macro 'ANY_ISO' 4281 | nNumIsoLines += ANY_ISO(i, bAtomsDT); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3814 | #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4317:26: note: in expansion of macro 'IS_DEUTERIUM' 4317 | int nIsotopeH = IS_DEUTERIUM(i)? 1 : IS_TRITIUM(i)? 2 : 0; | ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3815 | #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4317:47: note: in expansion of macro 'IS_TRITIUM' 4317 | int nIsotopeH = IS_DEUTERIUM(i)? 1 : IS_TRITIUM(i)? 2 : 0; | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3814 | #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3821:55: note: in expansion of macro 'IS_DEUTERIUM' 3821 | #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ | ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3826:29: note: in expansion of macro 'ANY_ISO' 3826 | #define NORMAL_ISO(i, X) (ANY_ISO(i, X) && !ABNORMAL_ISO(i)) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4354:14: note: in expansion of macro 'NORMAL_ISO' 4354 | if ( NORMAL_ISO(i, bAtomsDT) ) { | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3815 | #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3821:75: note: in expansion of macro 'IS_TRITIUM' 3821 | #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3826:29: note: in expansion of macro 'ANY_ISO' 3826 | #define NORMAL_ISO(i, X) (ANY_ISO(i, X) && !ABNORMAL_ISO(i)) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4354:14: note: in expansion of macro 'NORMAL_ISO' 4354 | if ( NORMAL_ISO(i, bAtomsDT) ) { | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3814 | #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3822:55: note: in expansion of macro 'IS_DEUTERIUM' 3822 | (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) | ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3826:29: note: in expansion of macro 'ANY_ISO' 3826 | #define NORMAL_ISO(i, X) (ANY_ISO(i, X) && !ABNORMAL_ISO(i)) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4354:14: note: in expansion of macro 'NORMAL_ISO' 4354 | if ( NORMAL_ISO(i, bAtomsDT) ) { | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3815 | #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3822:75: note: in expansion of macro 'IS_TRITIUM' 3822 | (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3826:29: note: in expansion of macro 'ANY_ISO' 3826 | #define NORMAL_ISO(i, X) (ANY_ISO(i, X) && !ABNORMAL_ISO(i)) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4354:14: note: in expansion of macro 'NORMAL_ISO' 4354 | if ( NORMAL_ISO(i, bAtomsDT) ) { | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3814 | #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3821:55: note: in expansion of macro 'IS_DEUTERIUM' 3821 | #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ | ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4521:22: note: in expansion of macro 'ANY_ISO' 4521 | if ( ANY_ISO(i, bAtomsDT) && !ALIASED_AT(i) ) { | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3815 | #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3821:75: note: in expansion of macro 'IS_TRITIUM' 3821 | #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4521:22: note: in expansion of macro 'ANY_ISO' 4521 | if ( ANY_ISO(i, bAtomsDT) && !ALIASED_AT(i) ) { | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3814 | #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3822:55: note: in expansion of macro 'IS_DEUTERIUM' 3822 | (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) | ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4521:22: note: in expansion of macro 'ANY_ISO' 4521 | if ( ANY_ISO(i, bAtomsDT) && !ALIASED_AT(i) ) { | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3815 | #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3822:75: note: in expansion of macro 'IS_TRITIUM' 3822 | (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4521:22: note: in expansion of macro 'ANY_ISO' 4521 | if ( ANY_ISO(i, bAtomsDT) && !ALIASED_AT(i) ) { | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3814 | #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4522:26: note: in expansion of macro 'IS_DEUTERIUM' 4522 | if ( IS_DEUTERIUM(i) ) { | ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3815 | #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4526:26: note: in expansion of macro 'IS_TRITIUM' 4526 | if ( IS_TRITIUM(i) ) { | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4212:9: warning: variable 'bNext' set but not used [-Wunused-but-set-variable] 4212 | int bNext /*, s*/; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4207:9: warning: variable 'flag_bad_charge' set but not used [-Wunused-but-set-variable] 4207 | int flag_bad_charge=0, flag_bad_iso = 0; | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'fix_odd_things': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:603:28: warning: 'c' may be used uninitialized in this function [-Wmaybe-uninitialized] 603 | if ( c == neigh && at[i2].bond_type[ineigh] == BOND_TYPE_SINGLE ) | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'WriteOrigAtomDataToSDfile': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4463:39: warning: '%3d' directive writing between 3 and 10 bytes into a region of size 9 [-Wformat-overflow=] 4463 | sprintf( entry, " %3d %3d", i+1, (int)at[i].charge ); | ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4463:37: note: directive argument in the range [1, 2147483647] 4463 | sprintf( entry, " %3d %3d", i+1, (int)at[i].charge ); | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4463:37: note: directive argument in the range [-128, 127] In file included from /usr/include/stdio.h:866, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:40: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 9 and 17 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4484:43: warning: '%3d' directive writing between 3 and 10 bytes into a region of size 9 [-Wformat-overflow=] 4484 | sprintf( entry, " %3d %3d", i+1, radical ); | ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4484:41: note: directive argument in the range [1, 2147483647] 4484 | sprintf( entry, " %3d %3d", i+1, radical ); | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4484:41: note: directive argument in the range [1, 3] In file included from /usr/include/stdio.h:866, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:40: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 9 and 16 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4535:39: warning: '%3d' directive writing between 3 and 10 bytes into a region of size 9 [-Wformat-overflow=] 4535 | sprintf( entry, " %3d %3d", i+1, iso ); | ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4535:37: note: directive argument in the range [1, 2147483647] 4535 | sprintf( entry, " %3d %3d", i+1, iso ); | ^~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:40: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 9 and 24 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/griddata.cpp.o -MF CMakeFiles/openbabel.dir/griddata.cpp.o.d -o CMakeFiles/openbabel.dir/griddata.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/griddata.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 14%] Linking C shared library ../../../lib64/libinchi.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchi.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -O2 -g -DNDEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,libinchi.so.0 -o ../../../lib64/libinchi.so.0.4.1 CMakeFiles/inchi.dir/ichi_bns.c.o CMakeFiles/inchi.dir/ichi_io.c.o CMakeFiles/inchi.dir/ichican2.c.o CMakeFiles/inchi.dir/ichicano.c.o CMakeFiles/inchi.dir/ichicans.c.o CMakeFiles/inchi.dir/ichiisot.c.o CMakeFiles/inchi.dir/ichilnct.c.o CMakeFiles/inchi.dir/ichimak2.c.o CMakeFiles/inchi.dir/ichimake.c.o CMakeFiles/inchi.dir/ichimap1.c.o CMakeFiles/inchi.dir/ichimap2.c.o CMakeFiles/inchi.dir/ichimap4.c.o CMakeFiles/inchi.dir/ichinorm.c.o CMakeFiles/inchi.dir/ichiparm.c.o CMakeFiles/inchi.dir/ichiprt1.c.o CMakeFiles/inchi.dir/ichiprt2.c.o CMakeFiles/inchi.dir/ichiprt3.c.o CMakeFiles/inchi.dir/ichiqueu.c.o CMakeFiles/inchi.dir/ichiread.c.o CMakeFiles/inchi.dir/ichiring.c.o CMakeFiles/inchi.dir/ichirvr1.c.o CMakeFiles/inchi.dir/ichirvr2.c.o CMakeFiles/inchi.dir/ichirvr3.c.o CMakeFiles/inchi.dir/ichirvr4.c.o CMakeFiles/inchi.dir/ichirvr5.c.o CMakeFiles/inchi.dir/ichirvr6.c.o CMakeFiles/inchi.dir/ichirvr7.c.o CMakeFiles/inchi.dir/ichisort.c.o CMakeFiles/inchi.dir/ichister.c.o CMakeFiles/inchi.dir/ichitaut.c.o CMakeFiles/inchi.dir/ikey_base26.c.o CMakeFiles/inchi.dir/ikey_dll.c.o CMakeFiles/inchi.dir/inchi_dll.c.o CMakeFiles/inchi.dir/inchi_dll_a.c.o CMakeFiles/inchi.dir/inchi_dll_a2.c.o CMakeFiles/inchi.dir/inchi_dll_main.c.o CMakeFiles/inchi.dir/runichi.c.o CMakeFiles/inchi.dir/sha2.c.o CMakeFiles/inchi.dir/strutil.c.o CMakeFiles/inchi.dir/util.c.o -lm -ldl -lz -lcairo -lc cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cmake -E cmake_symlink_library ../../../lib64/libinchi.so.0.4.1 ../../../lib64/libinchi.so.0 ../../../lib64/libinchi.so make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 14%] Built target inchi make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && 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-I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/op.cpp.o -MF CMakeFiles/openbabel.dir/op.cpp.o.d -o CMakeFiles/openbabel.dir/op.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/op.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/data.cpp.o -MF CMakeFiles/openbabel.dir/data.cpp.o.d -o CMakeFiles/openbabel.dir/data.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/data.cpp In file included from /usr/include/string.h:532, from /usr/include/c++/10/cstring:42, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/data.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/data.cpp:25: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'OpenBabel::OBElement::OBElement(int, const char*, double, double, double, int, double, double, double, double, double, double, double, std::string)' at /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/data.h:118:18, inlined from 'virtual void OpenBabel::OBElementTable::ParseLine(const char*)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/data.cpp:125:79: /usr/include/bits/string_fortified.h:91:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 3 bytes from a string of length 3 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/graphsym.cpp.o -MF CMakeFiles/openbabel.dir/graphsym.cpp.o.d -o CMakeFiles/openbabel.dir/graphsym.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/graphsym.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/kekulize.cpp.o -MF CMakeFiles/openbabel.dir/kekulize.cpp.o.d -o CMakeFiles/openbabel.dir/kekulize.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/kekulize.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/kekulize.cpp: In function 'bool OpenBabel::expandKekulize(OpenBabel::OBMol*, int, std::vector&, std::vector&, OpenBabel::Kekulize::Timeout&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/kekulize.cpp:742:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 742 | if (bond_idx >= bondState.size()) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o cd 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-DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/isomorphism.cpp.o -MF CMakeFiles/openbabel.dir/isomorphism.cpp.o.d -o CMakeFiles/openbabel.dir/isomorphism.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/isomorphism.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/plugin.cpp.o -MF CMakeFiles/openbabel.dir/plugin.cpp.o.d -o CMakeFiles/openbabel.dir/plugin.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/plugin.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/canon.cpp.o -MF CMakeFiles/openbabel.dir/canon.cpp.o.d -o CMakeFiles/openbabel.dir/canon.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/canon.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/canon.cpp: In constructor 'OpenBabel::CanonicalLabelsImpl::State::State(const std::vector&, const OpenBabel::OBBitVec&, std::vector&, std::vector&, OpenBabel::CanonicalLabelsImpl::Orbits&, OpenBabel::OBBitVec&, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/canon.cpp:710:34: warning: 'OpenBabel::CanonicalLabelsImpl::State::stereoCenters' will be initialized after [-Wreorder] 710 | std::vector &stereoCenters; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/canon.cpp:704:18: warning: 'const bool OpenBabel::CanonicalLabelsImpl::State::onlyOne' [-Wreorder] 704 | const bool onlyOne; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/canon.cpp:685:7: warning: when initialized here [-Wreorder] 685 | State(const std::vector &_symmetry_classes, | ^~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/obutil.cpp.o -MF CMakeFiles/openbabel.dir/obutil.cpp.o.d -o CMakeFiles/openbabel.dir/obutil.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/obutil.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC 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src/CMakeFiles/openbabel.dir/patty.cpp.o -MF CMakeFiles/openbabel.dir/patty.cpp.o.d -o CMakeFiles/openbabel.dir/patty.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/patty.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/query.cpp.o -MF 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CMakeFiles/openbabel.dir/generic.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp: In member function 'void OpenBabel::OBOrbitalData::LoadClosedShellOrbitals(std::vector, std::vector >, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp:1469:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1469 | if (alphaHOMO > energies.size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp:1485:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 1485 | if (i < alphaHOMO) | ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp: In member function 'void OpenBabel::OBOrbitalData::LoadAlphaOrbitals(std::vector, std::vector >, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp:1502:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1502 | if (alphaHOMO > energies.size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp:1516:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 1516 | if (i < alphaHOMO) | ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp: In member function 'void OpenBabel::OBOrbitalData::LoadBetaOrbitals(std::vector, std::vector >, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp:1533:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1533 | if (betaHOMO > energies.size()) | ~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp:1547:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 1547 | if (i < betaHOMO) | ~~^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -MF CMakeFiles/openbabel.dir/pointgroup.cpp.o.d -o CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::establish_pairs(OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:265:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 265 | if( elem->transform[i] >= _mol->NumAtoms() ){ /* No symmetric atom yet */ | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::check_transform_order(OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:309:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 309 | if( elem->transform[i] == i ) /* Identity transform is Ok for any order */ | ~~~~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:313:34: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 313 | if( elem->transform[j] == i ) | ~~~~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::same_transform(OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT*, OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:356:31: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 356 | if( b->transform[j] != i ) | ~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp: In member function 'OpenBabel::OBPointGroup::Symbol OpenBabel::OBPointGroup::IdentifyPointGroupSymbol(double)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:1956:37: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1956 | || d->NormalAxesCounts[2] >= maxAxis) { // Are there the perpendicular C2 axes? | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:1959:28: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1959 | if (d->PlanesCount >= maxAxis + 1) { // Likely Dnh | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:1984:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1984 | else if (d->PlanesCount == maxAxis) { // Likely Dnd | ~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:2086:29: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 2086 | else if (d->PlanesCount >= maxAxis) { // Cnv | ~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp: In member function 'void OpenBabel::OBPointGroup::Symmetrize(OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:2173:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 2173 | for (unsigned int i = 0; i < d->PlanesCount; i++) | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:2180:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 2180 | for (unsigned int i = 0; i < d->NormalAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:2187:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 2187 | for (unsigned int i = 0; i < d->ImproperAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/residue.cpp.o -MF CMakeFiles/openbabel.dir/residue.cpp.o.d -o CMakeFiles/openbabel.dir/residue.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/residue.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/tokenst.cpp.o -MF CMakeFiles/openbabel.dir/tokenst.cpp.o.d -o CMakeFiles/openbabel.dir/tokenst.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/tokenst.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/rotor.cpp.o -MF CMakeFiles/openbabel.dir/rotor.cpp.o.d -o CMakeFiles/openbabel.dir/rotor.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotor.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotor.cpp: In member function 'void OpenBabel::OBRotorList::RemoveSymVals(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotor.cpp:256:69: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 256 | if (this_side->GetAtomicNum() == 6 && this_side->GetHyb() == hyb && this_side->GetValence() == (hyb + 1) ) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotor.cpp:256:103: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 256 | if (this_side->GetAtomicNum() == 6 && this_side->GetHyb() == hyb && this_side->GetValence() == (hyb + 1) ) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/phmodel.cpp.o -MF CMakeFiles/openbabel.dir/phmodel.cpp.o.d -o CMakeFiles/openbabel.dir/phmodel.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/phmodel.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o CMakeFiles/openbabel.dir/obconversion.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/obconversion.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/zipstream.h:333, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/obconversion.cpp:53: /usr/src/RPM/BUILD/openbabel-2.4.1/src/zipstreamimpl.h: In instantiation of 'std::streampos zlib_stream::basic_unzip_streambuf::seekoff(std::streamoff, std::ios_base::seekdir, std::ios_base::openmode) [with charT = char; traits = std::char_traits; std::streampos = std::fpos<__mbstate_t>; std::streamoff = long int; std::ios_base::seekdir = std::ios_base::seekdir; std::ios_base::openmode = std::ios_base::openmode]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/zipstreamimpl.h:391:3: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/zipstreamimpl.h:401:8: warning: variable 'ch' set but not used [-Wunused-but-set-variable] 401 | char ch; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/zipstreamimpl.h: In instantiation of 'std::streampos zlib_stream::basic_unzip_streambuf::seekpos(std::streampos, std::ios_base::openmode) [with charT = char; traits = std::char_traits; std::streampos = std::fpos<__mbstate_t>; std::ios_base::openmode = std::ios_base::openmode]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/zipstreamimpl.h:444:3: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/zipstreamimpl.h:456:8: warning: variable 'ch' set but not used [-Wunused-but-set-variable] 456 | char ch; | ^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/spectrophore.cpp.o -MF CMakeFiles/openbabel.dir/spectrophore.cpp.o.d -o CMakeFiles/openbabel.dir/spectrophore.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/spectrophore.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/spectrophore.cpp:25: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/spectrophore.h: In constructor 'OpenBabel::OBSpectrophore::OBSpectrophore()': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/spectrophore.h:566:31: warning: 'OpenBabel::OBSpectrophore::_numberOfProbes' will be initialized after [-Wreorder] 566 | unsigned int _numberOfProbes; | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/spectrophore.h:560:31: warning: 'double** OpenBabel::OBSpectrophore::_property' [-Wreorder] 560 | double** _property; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/spectrophore.cpp:31:1: warning: when initialized here [-Wreorder] 31 | OBSpectrophore::OBSpectrophore(void) | ^~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/spectrophore.cpp:25: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/spectrophore.h: In copy constructor 'OpenBabel::OBSpectrophore::OBSpectrophore(const OpenBabel::OBSpectrophore&)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/spectrophore.h:567:31: warning: 'OpenBabel::OBSpectrophore::_spectro' will be initialized after [-Wreorder] 567 | std::vector _spectro; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/spectrophore.h:560:31: warning: 'double** OpenBabel::OBSpectrophore::_property' [-Wreorder] 560 | double** _property; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/spectrophore.cpp:48:1: warning: when initialized here [-Wreorder] 48 | OBSpectrophore::OBSpectrophore(const OBSpectrophore& s) | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/spectrophore.cpp: In member function 'void OpenBabel::OBSpectrophore::_luSolve(double**, std::vector&, double*, unsigned int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/spectrophore.cpp:1905:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 1905 | for (k = 0; k < i; ++k) | ~~^~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/transform.cpp.o -MF CMakeFiles/openbabel.dir/transform.cpp.o.d -o CMakeFiles/openbabel.dir/transform.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/transform.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/transform.cpp: In member function 'virtual OpenBabel::OBBase* OpenBabel::OBMol::DoTransformations(const std::map, std::__cxx11::basic_string >*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/transform.cpp:201:52: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 201 | if(itr2!=pOptions->end() && NumHvyAtoms()!=atoi(itr2->second.c_str())) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/rotamer.cpp.o -MF CMakeFiles/openbabel.dir/rotamer.cpp.o.d -o CMakeFiles/openbabel.dir/rotamer.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotamer.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotamer.cpp: In member function 'void OpenBabel::OBRotamerList::AddRotamer(std::vector)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotamer.cpp:405:11: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 405 | while (angle < 0.0) | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotamer.cpp:407:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 407 | while (angle > 360.0) | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotamer.cpp: In member function 'bool OpenBabel::OBRotamerList::SetCurrentCoordinates(OpenBabel::OBMol&, std::vector)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotamer.cpp:538:11: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 538 | while (angle < 0.0) | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotamer.cpp:540:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 540 | while (angle > 360.0) | ^~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -MF CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o.d -o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/dlhandler_unix.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/tautomer.cpp.o -MF CMakeFiles/openbabel.dir/tautomer.cpp.o.d -o CMakeFiles/openbabel.dir/tautomer.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/tautomer.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/forcefield.cpp.o -MF CMakeFiles/openbabel.dir/forcefield.cpp.o.d -o CMakeFiles/openbabel.dir/forcefield.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:384:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 384 | if (_ignoreAtom == a) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:386:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 386 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:396:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 396 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:406:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 406 | if (_ignoreAtom == d) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintType(int) const': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:658:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 658 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'double OpenBabel::OBFFConstraints::GetConstraintValue(int) const': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:666:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 666 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:674:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 674 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:682:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 682 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:690:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 690 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:698:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 698 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'int OpenBabel::OBForceField::FastRotorSearch(bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:1346:34: warning: array subscript has type 'char' [-Wchar-subscripts] 1346 | num_permutations = factorial[num_rotors_to_permute]; | ^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:1350:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1350 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1363 | for (int i=0; i >&, std::vector, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:1564:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 1564 | if (j == rotorKey[i]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:1583:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 1583 | if (j == rotorKey[i]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'void OpenBabel::OBForceField::DistanceGeometry()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:1963:26: warning: variable 'l_bc' set but not used [-Wunused-but-set-variable] 1963 | double l_ab, l_bc, l_ac; // lower limits | ^~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:22: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddIgnore(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomYConstraint(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomZConstraint(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomConstraint(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomXConstraint(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'int OpenBabel::OBForceField::FastRotorSearch(bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:1403:11: warning: 'minE' may be used uninitialized in this function [-Wmaybe-uninitialized] 1403 | if (minE < best_minE) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:1386:29: warning: 'minj' may be used uninitialized in this function [-Wmaybe-uninitialized] 1386 | rotorKey[idx + 1] = minj; | ^~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o -MF CMakeFiles/openbabel.dir/math/transform3d.cpp.o.d -o 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CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/matrix3x3.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/parsmart.cpp.o -MF CMakeFiles/openbabel.dir/parsmart.cpp.o.d -o CMakeFiles/openbabel.dir/parsmart.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp: In function 'int OpenBabel::CreateAtom(OpenBabel::Pattern*, OpenBabel::AtomExpr*, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp:450:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] 450 | int index,size; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp: In function 'int OpenBabel::CreateBond(OpenBabel::Pattern*, OpenBabel::BondExpr*, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp:482:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] 482 | int index,size; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp: In member function 'OpenBabel::Pattern* OpenBabel::OBSmartsPattern::SMARTSParser(OpenBabel::Pattern*, OpenBabel::ParseState*, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp:1489:45: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1489 | for (int nbr_idx=0; nbr_idx < pat->atom[stat->closure[index]].nbrs.size(); ++nbr_idx) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp:151:14: warning: 'int OpenBabel::GetVectorBinding()' declared 'static' but never defined [-Wunused-function] 151 | static int GetVectorBinding(); | ^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp:1716:20: warning: 'OpenBabel::AtomExpr* OpenBabel::NotAtomExpr(OpenBabel::AtomExpr*)' defined but not used [-Wunused-function] 1716 | static AtomExpr *NotAtomExpr( AtomExpr *expr ) | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp:293:14: warning: 'int OpenBabel::IsInvalidAtom(OpenBabel::AtomExpr*)' defined but not used [-Wunused-function] 293 | static int IsInvalidAtom( AtomExpr *expr ) | ^~~~~~~~~~~~~ make[2]: Leaving 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'/usr/src/RPM/BUILD/openbabel-2.4.1' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/math/vector3.cpp.o -MF CMakeFiles/openbabel.dir/math/vector3.cpp.o.d -o CMakeFiles/openbabel.dir/math/vector3.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/vector3.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -MF CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o.d -o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/svgpainter.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/svgpainter.cpp:18: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/depict/svgpainter.h: In constructor 'OpenBabel::SVGPainter::SVGPainter(std::ostream&, std::set >*, bool, double, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/depict/svgpainter.h:77:11: warning: 'OpenBabel::SVGPainter::m_fontPointSize' will be initialized after [-Wreorder] 77 | int m_fontPointSize; | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/depict/svgpainter.h:75:12: warning: 'bool OpenBabel::SVGPainter::m_isFillcolor' [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/svgpainter.cpp:18: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/depict/svgpainter.h:75:12: warning: 'OpenBabel::SVGPainter::m_isFillcolor' will be initialized after [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/depict/svgpainter.h:74:32: warning: 'std::set >* OpenBabel::SVGPainter::m_Gradients' [-Wreorder] 74 | std::set *m_Gradients; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF CMakeFiles/openbabel.dir/typer.cpp.o.d -o CMakeFiles/openbabel.dir/typer.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/typer.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/obmolecformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/obmolecformat.cpp: In static member function 'static bool OpenBabel::OBMoleculeFormat::DoOutputOptions(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/obmolecformat.cpp:208:18: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 208 | for (; c < pmol->NumConformers()-1; ++c) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/obmolecformat.cpp: In static member function 'static bool OpenBabel::OBMoleculeFormat::OutputMolsFromReaction(OpenBabel::OBReaction*, OpenBabel::OBConversion*, OpenBabel::OBFormat*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/obmolecformat.cpp:444:14: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 444 | for(i=0;iNumReactants();i++) | ~^~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/obmolecformat.cpp:446:14: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 446 | for(i=0;iNumProducts();i++) | ~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/tetraplanar.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/squareplanar.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/tetranonplanar.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -MF CMakeFiles/openbabel.dir/stereo/stereo.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/stereo.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/stereo.cpp: In static member function 'static void OpenBabel::OBStereo::Permutate(OpenBabel::OBStereo::Refs&, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/stereo.cpp:77:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 77 | if (i < 0 || i >= refs.size()) | ~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/stereo.cpp:79:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 79 | if (j < 0 || j >= refs.size()) | ~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/stereo.cpp: In static member function 'static OpenBabel::OBStereo::Refs OpenBabel::OBStereo::Permutated(const Refs&, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/stereo.cpp:88:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 88 | if (i < 0 || i >= refs.size()) | ~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/stereo.cpp:90:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 90 | if (j < 0 || j >= refs.size()) | ~~^~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o CMakeFiles/openbabel.dir/confsearch.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp: In member function 'unsigned int OpenBabel::LFSR::GetNext()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:81:47: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses] 81 | _lfsr = (_lfsr >> 1) ^ (unsigned int)(0 - (_lfsr & 1u) & _poly); | ~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp: In constructor 'OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:115:20: warning: 'OpenBabel::OBDiversePoses::cutoff' will be initialized after [-Wreorder] 115 | const double cutoff; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:109:12: warning: 'bool OpenBabel::OBDiversePoses::_percise' [-Wreorder] 109 | bool _percise; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:120:3: warning: when initialized here [-Wreorder] 120 | OBDiversePoses::OBDiversePoses(const OBMol &ref, double RMSD, bool percise): | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp: In member function 'bool OpenBabel::OBDiversePoses::AddPose(double*, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:146:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 146 | for (unsigned int a = 0; a < natoms; ++a) | ~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp: In member function 'bool OpenBabel::OBDiversePoses::AddPose(std::vector, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:185:14: warning: unused variable 'min_rmsd' [-Wunused-variable] 185 | double min_rmsd = DBL_MAX; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:249:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 249 | for (int k = *c; k < levels.size(); ++k) { | ~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp: In member function 'std::vector OpenBabel::OBDiversePoses::GetHeavyAtomCoords(const std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:263:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 263 | for (unsigned int a = 0; a < natoms; ++a) | ~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp: In member function 'int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:379:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 379 | for (int i = 1; i < rl.Size() + 1; ++i, rotor = rl.NextRotor(ri)) { // foreach rotor | ~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:417:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 417 | for (int i = 0 ; i < rotor_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:432:42: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 432 | } while (combination != 1 && counter < nconfs); // The LFSR always terminates with a 1 | ~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:355:9: warning: unused variable 'origLogLevel' [-Wunused-variable] 355 | int origLogLevel = _loglvl; | ^~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/tetrahedral.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/mol.cpp.o -MF CMakeFiles/openbabel.dir/mol.cpp.o.d -o CMakeFiles/openbabel.dir/mol.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp: In member function 'unsigned int OpenBabel::OBMol::NumHvyAtoms()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:783:30: warning: unnecessary parentheses in declaration of 'i' [-Wparentheses] 783 | vector::iterator(i); | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp: In member function 'OpenBabel::OBAtom* OpenBabel::OBMol::NewAtom(long unsigned int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:1654:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1654 | if (vb->GetBgn() > _natoms || vb->GetEnd() > _natoms) | ~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:1654:58: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1654 | if (vb->GetBgn() > _natoms || vb->GetEnd() > _natoms) | ~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp: In member function 'bool OpenBabel::OBMol::AddAtom(OpenBabel::OBAtom&, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:1783:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1783 | if (vb->GetBgn() > _natoms || vb->GetEnd() > _natoms) | ~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:1783:58: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1783 | if (vb->GetBgn() > _natoms || vb->GetEnd() > _natoms) | ~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp: In member function 'bool OpenBabel::OBMol::StripSalts(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:1853:23: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1853 | if (i->size() < threshold || (threshold == 0 && i != max)) | ~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp: In member function 'void OpenBabel::OBMol::SetConformer(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:4178:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4178 | if (i >= 0 && i < _vconf.size()) | ~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp: In member function 'bool OpenBabel::OBMol::MakeDativeBonds()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:4276:35: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 4276 | bool higherorder = bo > bestbond->GetBondOrder(); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp: In member function 'bool OpenBabel::OBMol::ConvertZeroBonds()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:4342:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4342 | for (int n = 0; n < bonds.size(); n++) { | ~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:4364:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4364 | for (int n = 1; n < scores.size(); n++) { | ~~^~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -MF CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/cistrans.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -MF CMakeFiles/openbabel.dir/math/spacegroup.cpp.o.d -o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/spacegroup.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/distgeom.cpp.o -MF CMakeFiles/openbabel.dir/distgeom.cpp.o.d -o CMakeFiles/openbabel.dir/distgeom.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:39: warning: ignoring '#pragma warning ' [-Wunknown-pragmas] 39 | #pragma warning(disable : 4244) // warning C4244: '=' : conversion from 'double' to 'float', possible loss of data | /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:40: warning: ignoring '#pragma warning ' [-Wunknown-pragmas] 40 | #pragma warning(disable : 4305) // warning C4305: '*=' : truncation from 'double' to 'float' | /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:526:3: warning: multi-line comment [-Wcomment] 526 | // \ | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:883:9: warning: multi-line comment [-Wcomment] 883 | // / \ | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp: In member function 'void OpenBabel::OBDistanceGeometry::Set14Bounds()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:481:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 481 | if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:481:59: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 481 | if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:488:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 488 | if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:488:59: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 488 | if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:502:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 502 | if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:502:59: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 502 | if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:508:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 508 | if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:508:59: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 508 | if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:388:18: warning: unused variable 'i' [-Wunused-variable] 388 | unsigned int i, j; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:388:21: warning: unused variable 'j' [-Wunused-variable] 388 | unsigned int i, j; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:428:19: warning: unused variable 'bond_id' [-Wunused-variable] 428 | OBStereo::Ref bond_id; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp: In member function 'OpenBabel::OBCisTransStereo* OpenBabel::OBDistanceGeometry::GetCisTransStereo(OpenBabel::OBBond*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:586:19: warning: unused variable 'bond_id' [-Wunused-variable] 586 | OBStereo::Ref bond_id; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp: In member function 'void OpenBabel::OBDistanceGeometry::Set15Bounds()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:616:18: warning: unused variable 'i' [-Wunused-variable] 616 | unsigned int i, j; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:616:21: warning: unused variable 'j' [-Wunused-variable] 616 | unsigned int i, j; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp: In member function 'void OpenBabel::OBDistanceGeometry::TriangleSmooth(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:747:9: warning: unused variable 'loopCount' [-Wunused-variable] 747 | int loopCount = 0; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp: In member function 'void OpenBabel::OBDistanceGeometry::AddConformer()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:1107:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 1107 | if (a->GetIdx() == origin || a->GetIdx() == second || a->GetIdx() == third) | ~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:1107:52: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 1107 | if (a->GetIdx() == origin || a->GetIdx() == second || a->GetIdx() == third) | ~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:1107:77: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 1107 | if (a->GetIdx() == origin || a->GetIdx() == second || a->GetIdx() == third) | ~~~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:1041:18: warning: unused variable 'attempts' [-Wunused-variable] 1041 | unsigned int attempts = 0; | ^~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -MF CMakeFiles/openbabel.dir/stereo/facade.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/facade.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -MF CMakeFiles/openbabel.dir/depict/depict.cpp.o.d -o CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp: In function 'unsigned int OpenBabel::GetAtomSymClass(OpenBabel::OBAtom*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:280:11: warning: unused variable 'nclasses' [-Wunused-variable] 280 | int nclasses = end_pos - copy_sym.begin(); | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp: In member function 'virtual void OpenBabel::OBDepictPrivate::DrawAtomLabel(const string&, int, const OpenBabel::vector3&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:966:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable] 966 | OBFontMetrics metrics = painter->GetFontMetrics(str); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:971:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable] 971 | OBFontMetrics metrics = painter->GetFontMetrics(subscript); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp: In member function 'bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:423:25: warning: 'max_z' may be used uninitialized in this function [-Wmaybe-uninitialized] 423 | d->zScale = max_z - min_z; | ~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:423:25: warning: 'min_z' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:421:22: warning: 'max_y' may be used uninitialized in this function [-Wmaybe-uninitialized] 421 | height = max_y - min_y + 2*margin; | ~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:421:22: warning: 'min_y' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:420:22: warning: 'max_x' may be used uninitialized in this function [-Wmaybe-uninitialized] 420 | width = max_x - min_x + 2*margin; | ~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:420:22: warning: 'min_x' may be used uninitialized in this function [-Wmaybe-uninitialized] make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -MF CMakeFiles/openbabel.dir/conformersearch.cpp.o.d -o CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp: In member function 'virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:239:12: warning: unused variable 'score' [-Wunused-variable] 239 | double score = ff->Energy(false); // no gradients | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::local_opt()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:728:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 728 | for (i = 1; i <= m_rotorList.Size(); ++i, rotor = m_rotorList.NextRotor(ri)) | ~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::reproduce(OpenBabel::RotorKey&, OpenBabel::RotorKey&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:789:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 789 | if (iniche > -1) | ~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::share_fitness()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:944:37: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 944 | if ((dynamic_niches.size () < nb_niches) && (dynamic_niches.size () %2)) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:959:30: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 959 | if (dist < min_dist ) | ~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:972:18: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 972 | if (imax == -1) | ~~~~~^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:988:40: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 988 | if (dynamic_niches.size () < nb_niches) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:915:10: warning: unused variable 'flag_niched' [-Wunused-variable] 915 | bool flag_niched = false; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp: In member function 'double OpenBabel::OBConformerSearch::sharing_generation()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:1077:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1077 | while (ninsert < ((half_pop * 2) / 3)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:1086:24: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1086 | if (iround < imax) | ~~~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:1094:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1094 | if (ninsert >= half_pop) | ~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:1119:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1119 | while (ninsert < half_pop) | ~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:1043:23: warning: unused variable 'lowest' [-Wunused-variable] 1043 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:1043:37: warning: unused variable 'highest' [-Wunused-variable] 1043 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp: In member function 'double OpenBabel::OBConformerSearch::MakeSelection()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:492:31: warning: 'highest' may be used uninitialized in this function [-Wmaybe-uninitialized] 492 | double sum = 0.0, lowest, highest; | ^~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:421:5: warning: multi-line comment [-Wcomment] 421 | // / \ | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TSimpleMolecule::threeBondResolve(int, int, double&, double&, OpenBabel::neighbourlist*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:964:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 964 | for (i=0; i&, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:1467:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1467 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1474 | } while (k&, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:2005:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2005 | for (j=0; j0) atDef=atDef+1; | ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:2015:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2015 | if (cN>=0) if (maxAtDef==atomCycle[cN].size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:2030:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2030 | for (j=1; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2036 | for (j=0;j&, std::vector, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:2103:98: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2103 | if (baseCycle>0) for (i=0; i, std::vector, int, int&, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:2234:67: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2234 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2236 | for (k=0; k::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2260 | for (j=1; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2981 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3020 | for (i=0; i, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3099 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3099:75: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3099 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3101:26: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3101 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3101:75: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3101 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In function 'bool OpenBabel::compareAtoms(int, int, std::vector*>)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3123:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3123 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3123:63: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3123 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::makeEquivalentList(std::vector&, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3287:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3287 | for (j=0; jsize(); j++) (*lL)[i]=0; | ~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3295:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3295 | for (i=0; i*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3305 | for (int i=0; i&, std::vector)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3321:13: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const value_type' {aka 'const int'} [-Wsign-compare] 3321 | if (l <= maxValues[i]) { /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'int OpenBabel::TSimpleMolecule::correctOverlapped()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3370:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3370 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3423 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3433 | for (i=0; i*, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3536:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 3536 | for (i=0; isize(); i++) if (i != index) { | ~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4212:19: warning: variable 'nBondsOld' set but not used [-Wunused-but-set-variable] 4212 | int nAtomsOld,nBondsOld,naDef1,naDef,i; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4213:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] 4213 | bool test,test1,test2; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4213:15: warning: variable 'test1' set but not used [-Wunused-but-set-variable] 4213 | bool test,test1,test2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4213:21: warning: variable 'test2' set but not used [-Wunused-but-set-variable] 4213 | bool test,test1,test2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4215:40: warning: variable 'xCenter' set but not used [-Wunused-but-set-variable] 4215 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4215:48: warning: variable 'yCenter' set but not used [-Wunused-but-set-variable] 4215 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'OpenBabel::TEditedMolecule* OpenBabel::TEditedMolecule::extractFragment(int, std::vector*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4406:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4406 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4406:71: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4406 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4411:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4411 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4414 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4587 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4592 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4597 | for (i=0; i*, std::vector*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4632:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 4632 | if (qEnumerator->size() != nAtoms()) qEnumerator->resize(nAtoms()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4633:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4633 | for (i=0; isize(); i++) (*qEnumerator)[i]=i; | ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4662:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4662 | for (j=0; jsize(); j++) { | ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TEditedMolecule::fragmentSearch(OpenBabel::TEditedMolecule*, std::vector*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4849:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4849 | if (molecule1->listarSize()>aSTested.size()) aSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4850:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4850 | if (molecule1->listarSize()>bSTested.size()) bSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4851:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4851 | if (molecule1->listarSize()>queryQHydr.size()) queryQHydr.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4852:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4852 | if (molecule1->listarSize()>queryAQTested.size()) queryAQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4853:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4853 | if (molecule1->listarSize()>queryBQTested.size()) queryBQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4854:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4854 | if (molecule1->listarSize()>queryCurrentAssignment.size()) queryCurrentAssignment.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4855:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4855 | if (this->listarSize()>queryAQTested.size()) queryAQTested.resize(this->listarSize()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5032:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4836:9: warning: variable 'cycleNumber' set but not used [-Wunused-but-set-variable] 4836 | int cycleNumber; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TemplateRedraw::loadTemplates()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5111:24: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 5111 | } catch (exception ex) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TemplateRedraw::internalBondsPresent(OpenBabel::TEditedMolecule*, OpenBabel::TSimpleMolecule*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5201:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 5201 | for (i=0; inAtoms(); i++) aList[mQuery->queryAQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5202:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 5202 | for (i=0; inBonds(); i++) bList[mQuery->queryBQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TemplateRedraw::rotateBondVertically(OpenBabel::TSimpleMolecule*, std::vector, int, double, double, double&, double&, double&, double&, double&, double&, int&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5232:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5232 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5277 | for (i=0; i*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5311:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5311 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5328:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5328 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5358 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5368 | for (i=0; i*, OpenBabel::PartFragmentDefinition&, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5399:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5399 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5412:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5412 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5428:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5428 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'int OpenBabel::TemplateRedraw::coordinatesPrepare(OpenBabel::TEditedMolecule&, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5667:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5667 | for (i=kk; ifragmentSearch(&sm,NULL)) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5715:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5715 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5718 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5726 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5798 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5828 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5894 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5906 | for (frCount=0; frCount::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5922 | for (frCount=0; frCount::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5945 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5960 | for (frCount=0; frCount::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6000 | for (i=0;i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6007 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6026 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6034 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6035 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6036 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6359 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In function 'std::string OpenBabel::getAtomMCDL(OpenBabel::OBMol*, int, std::vector, std::vector, std::vector, std::vector)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6546:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6546 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6591 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6593:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6593 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) n++; | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6599:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6599 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) { | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6609:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6609 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-1; | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6612:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6612 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-2; | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6623:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6623 | if (k == 1) for (i=0; i >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6632 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6632 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6642 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In function 'std::string OpenBabel::getBondMCDL(OpenBabel::OBMol*, int, int, std::vector, std::vector, int (*)[4], std::vector, std::vector)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6843:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6843 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6845:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6845 | for (j=i+1; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6850 | for (j=i+1; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6864 | for (j=i+1; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6872 | for (j=i+1; j >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6877 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6877 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6887 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6680:26: warning: variable 'n4' set but not used [-Wunused-but-set-variable] 6680 | int i,j,n,m,n1,n2,n3,n4,an1,an2,an3,an4,k; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In function 'void OpenBabel::implementAtomStereo(std::vector&, std::vector&, std::vector&, std::vector, std::vector, int, int, std::string)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6960:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6960 | if (n1 < (astereo.length()-1)) astereo=astereo.substr(n1+1); else astereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In function 'void OpenBabel::implementBondStereo(std::vector, std::vector, std::vector&, std::vector&, int, int, std::string)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7024:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7024 | if (n1 < (bstereo.length()-1)) bstereo=bstereo.substr(n1+1); else bstereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7067:34: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 7067 | } catch (exception ex) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7081:34: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 7081 | } catch (exception ex) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In function 'int OpenBabel::groupRedraw(OpenBabel::OBMol*, int, int, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7159:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7159 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7167 | for (int i=0; i&, int&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7209:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7209 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7212:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7212 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7233:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7233 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7236:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7236 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4329:16: warning: 'r1' may be used uninitialized in this function [-Wmaybe-uninitialized] 4329 | xNew=r1*scale*xu1+this->getAtom(thisAN)->rx; | ~~^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/math/align.cpp.o -MF CMakeFiles/openbabel.dir/math/align.cpp.o.d -o CMakeFiles/openbabel.dir/math/align.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/align.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/align.cpp: In member function 'std::vector OpenBabel::OBAlign::GetAlignment()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/align.cpp:399:45: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'Eigen::Index' {aka 'long int'} [-Wsign-compare] 399 | for (vector::size_type i=0; i&, std::map&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp:2780:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 2780 | if (score > max_bond_score) { | ~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp:2712:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 2712 | for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) | ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp:2849:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 2849 | return true; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp:2871:16: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] 2871 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ^~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_function.h:1392, from /usr/include/c++/10/bits/stl_tree.h:65, from /usr/include/c++/10/map:60, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/base.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/stereo/stereo.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/stereo/tetranonplanar.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/stereo/tetrahedral.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp:25: /usr/include/c++/10/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref, OpenBabel::OBStereo::Ref)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp:2903:16: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] 2903 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ^~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_function.h:1392, from /usr/include/c++/10/bits/stl_tree.h:65, from /usr/include/c++/10/map:60, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/base.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/stereo/stereo.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/stereo/tetranonplanar.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/stereo/tetrahedral.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp:25: /usr/include/c++/10/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 22%] Linking CXX shared library ../lib64/libopenbabel.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/openbabel.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings 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src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src /usr/src/RPM/BUILD/openbabel-2.4.1/src/CMakeFiles/plugin_descriptors.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/build make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src 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/usr/src/RPM/BUILD/openbabel-2.4.1/src /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src /usr/src/RPM/BUILD/openbabel-2.4.1/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/build make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src /usr/src/RPM/BUILD/openbabel-2.4.1/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 22%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/descriptors/cmpdfilter.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/addfilename.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 24%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/descriptors/cansmidescriptor.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 24%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/descriptors/filters.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 24%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eem.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/eem.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/descriptors/smartsdescriptors.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 24%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/gasteiger.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 24%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/descriptors/inchidescriptor.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/descriptors/inchidescriptor.cpp:24: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const string&, const string&) const': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:150:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 150 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:150:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 150 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:155:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 155 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:155:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 155 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/addinindex.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 24%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprints/finger3.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprints/finger3.cpp: In member function 'virtual bool OpenBabel::PatternFP::GetFingerprint(OpenBabel::OBBase*, std::vector&, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprints/finger3.cpp:108:13: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 108 | while(n < _bitcount) | ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprints/finger3.cpp: In member function 'virtual std::string OpenBabel::PatternFP::DescribeBits(std::vector, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprints/finger3.cpp:257:34: warning: operation on 'div' may be undefined [-Wsequence-point] 257 | ngrp = (num + div -1)/div--; //rounds up | ~~~^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprints/finger3.cpp:257:34: warning: operation on 'div' may be undefined [-Wsequence-point] make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 24%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprints/fingerecfp.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 24%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprints/finger2.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 22%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -MF 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CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -lm -ldl -lz ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 28%] Built target plugin_descriptors make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Linking CXX shared module ../lib64/plugin_fingerprints.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -lm -ldl -lz ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/mmff94.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 28%] Built target plugin_fingerprints make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/none.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/none.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmol2format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o CMakeFiles/mol2format.dir/mol2format.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp: In member function 'virtual const char* OpenBabel::MOL2Format::Description()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:49:9: warning: statement has no effect [-Wunused-value] 49 | " c Write UCSF Dock scores saved in comments preceeding molecules\n\n"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp: In member function 'virtual bool OpenBabel::MOL2Format::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:391:46: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 391 | if ((bond2->GetBeginAtom()->GetIdx() == idx1 || bond2->GetEndAtom()->GetIdx() == idx1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:391:87: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 391 | if ((bond2->GetBeginAtom()->GetIdx() == idx1 || bond2->GetEndAtom()->GetIdx() == idx1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:394:51: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 394 | else if ((bond2->GetBeginAtom()->GetIdx() == idx2 || bond2->GetEndAtom()->GetIdx() == idx2) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:394:92: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 394 | else if ((bond2->GetBeginAtom()->GetIdx() == idx2 || bond2->GetEndAtom()->GetIdx() == idx2) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:476:99: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 476 | if (n_h_bonded < min_n_h_bonded || (n_h_bonded == min_n_h_bonded && partner->GetIdx() < min_idx)) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:499:35: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 499 | if (partner->GetIdx() == min_idx) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp: In member function 'virtual int OpenBabel::MOL2Format::SkipObjects(int, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:727:10: warning: unused variable 'ch' [-Wunused-variable] 727 | char ch = ifs.peek(); | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp: In member function 'virtual bool OpenBabel::MOL2Format::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:677:40: warning: '%-6s' directive output may be truncated writing between 6 and 32767 bytes into a region of size between 32756 and 32760 [-Wformat-truncation=] 677 | snprintf(buffer,BUFF_SIZE,"%7d %-6s %9.4f %9.4f %9.4f %-5s %3s %-8s %9.4f", | ^~~~ 678 | atom->GetIdx(),label, | ~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:17: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output 77 or more bytes (assuming 32838) into a destination of size 32768 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/addpolarh.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 28%] Linking CXX shared module ../../lib64/mol2format.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mol2format.so CMakeFiles/mol2format.dir/mol2format.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Built target mol2format make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/canonical.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/addnonpolarh.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcopyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -MF CMakeFiles/copyformat.dir/copyformat.cpp.o.d -o CMakeFiles/copyformat.dir/copyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/copyformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Linking CXX shared module ../../lib64/copyformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/copyformat.so CMakeFiles/copyformat.dir/copyformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Built target copyformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/fromfile.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/fromfile.cpp: In member function 'virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/fromfile.cpp:96:22: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 96 | for ( int i = 1; i <= mol.NumAtoms(); i++) | ~~^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/delpolarh.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 28%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -MF CMakeFiles/asciiformat.dir/asciiformat.cpp.o.d -o CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/asciiformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/delnonpolarh.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/changecell.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/changecell.cpp: In member function 'virtual bool OpenBabel::OpChangeCell::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/changecell.cpp:83:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 83 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/changecell.cpp:114:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 114 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpdbformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -MF CMakeFiles/pdbformat.dir/pdbformat.cpp.o.d -o CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:623:58: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 623 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:17: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:641:70: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 641 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:17: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:678:35: warning: '%+d' directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=] 678 | snprintf(scharge, 3, "%+d", charge); | ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:678:34: note: directive argument in the range [-32768, 32767] 678 | snprintf(scharge, 3, "%+d", charge); | ^~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:17: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 3 and 7 bytes into a destination of size 3 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:532, from /usr/include/c++/10/cstring:42, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/data.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:45, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:17: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'bool OpenBabel::readIntegerFromRecord(char*, unsigned int, long int*)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:261:12, inlined from 'bool OpenBabel::parseConectRecord(char*, OpenBabel::OBMol&)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:347:34, inlined from 'virtual bool OpenBabel::PDBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:145:30: /usr/include/bits/string_fortified.h:91:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 5 bytes from a string of length 32761 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'bool OpenBabel::readIntegerFromRecord(char*, unsigned int, long int*)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:261:12, inlined from 'bool OpenBabel::parseConectRecord(char*, OpenBabel::OBMol&)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:404:66, inlined from 'virtual bool OpenBabel::PDBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:145:30: /usr/include/bits/string_fortified.h:91:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 5 bytes from a string of length 32756 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'bool OpenBabel::readIntegerFromRecord(char*, unsigned int, long int*)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:261:12, inlined from 'bool OpenBabel::parseConectRecord(char*, OpenBabel::OBMol&)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:407:66, inlined from 'virtual bool OpenBabel::PDBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:145:30: /usr/include/bits/string_fortified.h:91:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 5 bytes from a string of length 32751 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'bool OpenBabel::readIntegerFromRecord(char*, unsigned int, long int*)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:261:12, inlined from 'bool OpenBabel::parseConectRecord(char*, OpenBabel::OBMol&)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:408:66, inlined from 'virtual bool OpenBabel::PDBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:145:30: /usr/include/bits/string_fortified.h:91:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 5 bytes from a string of length 32746 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'bool OpenBabel::readIntegerFromRecord(char*, unsigned int, long int*)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:261:12, inlined from 'bool OpenBabel::parseConectRecord(char*, OpenBabel::OBMol&)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:409:66, inlined from 'virtual bool OpenBabel::PDBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbformat.cpp:145:30: /usr/include/bits/string_fortified.h:91:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 5 bytes from a string of length 32741 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/asciipainter.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/asciipainter.cpp: In member function 'virtual void OpenBabel::ASCIIPainter::DrawText(double, double, const string&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/asciipainter.cpp:118:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 118 | for (int i=0; iGetId() == ct->end || a->GetId() == stereo.neighbor[0] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/inchiformat.cpp:183:54: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'AT_NUM' {aka 'short int'} [-Wsign-compare] 183 | if ( !(b->GetId() == ct->begin || b->GetId() == stereo.neighbor[3] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 31%] Linking CXX shared module ../../lib64/nulformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/nulformat.so CMakeFiles/nulformat.dir/nulformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 31%] Built target nulformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/forcefield.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/forcefield.cpp: In member function 'virtual bool OpenBabel::OpMinimize::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/forcefield.cpp:235:10: warning: unused variable 'done' [-Wunused-variable] 235 | bool done = true; | ^~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 31%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpainterformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -MF CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o.d -o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/commandpainter.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 31%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -MF CMakeFiles/inchiformat.dir/getinchi.cpp.o.d -o CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/getinchi.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.cpp: In instantiation of 'void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.cpp:470:37: required from 'double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = true]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.h:192:38: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.cpp:423:14: warning: unused variable 'ab' [-Wunused-variable] 423 | double ab[3]; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.cpp: In instantiation of 'void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.cpp:470:37: required from 'double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = false]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.h:192:55: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.cpp:423:14: warning: unused variable 'ab' [-Wunused-variable] make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/fillUC.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 25%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmdlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp:38: /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h: In function 'unsigned int MDLValence(unsigned int, int, unsigned int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:51:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 51 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:51:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 51 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:64:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 64 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:64:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 64 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:77:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 77 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:77:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 77 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:90:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 90 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:90:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 90 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:103:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 103 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:103:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 103 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:116:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 116 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:116:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 116 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:119:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 119 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:119:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 119 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:121:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 121 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:121:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 121 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:134:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 134 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:134:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 134 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:137:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 137 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:137:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 137 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:139:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 139 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:139:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 139 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:152:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 152 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:152:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 152 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:155:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 155 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:155:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 155 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:157:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 157 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:157:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 157 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:170:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 170 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:170:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 170 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:173:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 173 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:173:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 173 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:175:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 175 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:175:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 175 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:188:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 188 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:188:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 188 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:191:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 191 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:191:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 191 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:193:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 193 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:193:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 193 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:206:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 206 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:206:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 206 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:209:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 209 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:209:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 209 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:211:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 211 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:211:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 211 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:223:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 223 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:223:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 223 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:226:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 226 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:226:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 226 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:228:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 228 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:228:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 228 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:240:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 240 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:240:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 240 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:243:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 243 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:243:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 243 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:245:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 245 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:245:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 245 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:257:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 257 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:257:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 257 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:260:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 260 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:260:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 260 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:262:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 262 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:262:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 262 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:274:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 274 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:274:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 274 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:277:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 277 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:277:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 277 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:279:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 279 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:279:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 279 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:291:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 291 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:291:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 291 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:294:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 294 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:294:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 294 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:296:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 296 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:296:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 296 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:298:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 298 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:298:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 298 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:310:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 310 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:310:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 310 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:313:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 313 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:313:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 313 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:315:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 315 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:315:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 315 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:317:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 317 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:317:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 317 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:329:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 329 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:329:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 329 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:332:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 332 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:332:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 332 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:334:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 334 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:334:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 334 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:336:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 336 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:336:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 336 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:348:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 348 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:348:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 348 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:351:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 351 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:351:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 351 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:353:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 353 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:353:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 353 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:355:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 355 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:355:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 355 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:367:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 367 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:367:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 367 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:370:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 370 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:370:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 370 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:372:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 372 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:372:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 372 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:374:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 374 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:374:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 374 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:385:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 385 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:385:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 385 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:388:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 388 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:388:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 388 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:390:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 390 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:390:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 390 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:392:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 392 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:392:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 392 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:394:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 394 | if (val <= 3) return 3; break; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:394:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 394 | if (val <= 3) return 3; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h: In function 'unsigned int HYDValence(unsigned int, int, unsigned int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:416:11: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 416 | if (val > impval) { | ~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp: In member function 'bool OpenBabel::MDLFormat::ReadAtomBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp:1345:10: warning: unused variable 'chiralWatch' [-Wunused-variable] 1345 | bool chiralWatch=false; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp: In member function 'std::string OpenBabel::MDLFormat::GetTimeDate()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp:1652:27: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=] 1652 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp:1652:22: note: directive argument in the range [-2147483648, 2147483547] 1652 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/include/c++/10/bits/locale_classes.h:40, from /usr/include/c++/10/bits/ios_base.h:41, from /usr/include/c++/10/iomanip:40, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp:27: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 11 and 56 bytes into a destination of size 11 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp: In member function 'void OpenBabel::MDLFormat::CisTransFromUpDown(OpenBabel::OBMol*, std::map*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp:1971:58: warning: 'a2_stereo' may be used uninitialized in this function [-Wmaybe-uninitialized] 1971 | if (a1_stereo == OBStereo::UnknownDir || a2_stereo == OBStereo::UnknownDir) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp:1971:21: warning: 'a1_stereo' may be used uninitialized in this function [-Wmaybe-uninitialized] 1971 | if (a1_stereo == OBStereo::UnknownDir || a2_stereo == OBStereo::UnknownDir) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/largest.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/largest.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 31%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpainterformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -MF CMakeFiles/painterformat.dir/painterformat.cpp.o.d -o CMakeFiles/painterformat.dir/painterformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/painterformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/painterformat.cpp: In member function 'virtual bool OpenBabel::PainterFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/painterformat.cpp:113:12: warning: unused variable 'ofs' [-Wunused-variable] 113 | ostream& ofs = *pConv->GetOutStream(); | ^~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 31%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dreportformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -MF CMakeFiles/reportformat.dir/reportformat.cpp.o.d -o CMakeFiles/reportformat.dir/reportformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/reportformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 34%] Linking CXX shared module ../../lib64/mdlformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 35%] Built target mdlformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In member function 'virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:2790:32: warning: variable 'bondtype1' set but not used [-Wunused-but-set-variable] 2790 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:2790:43: warning: variable 'bondtype2' set but not used [-Wunused-but-set-variable] 2790 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:288:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:140:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 140 | for (int i = 0; i < _bondcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:288:59: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:140:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:294:42: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:255:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 255 | for (int i = 0; i < _anglecalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:294:61: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:255:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:300:43: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:368:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 368 | for (int i = 0; i < _strbndcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:300:63: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:368:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:306:44: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:504:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 504 | for (int i = 0; i < _torsioncalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:306:65: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:504:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:312:40: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:602:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 602 | for (int i = 0; i < _oopcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:312:57: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:602:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:318:40: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:699:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 699 | for (int i = 0; i < _vdwcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:318:57: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:699:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:324:50: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:785:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 785 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:324:77: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:785:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In member function 'bool OpenBabel::OBForceFieldMMFF94::PerceiveAromatic()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:1443:30: warning: 'first_rj' may be used uninitialized in this function [-Wmaybe-uninitialized] 1443 | ringbond = _mol.GetBond(first_rj, index); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:1443:30: warning: 'index' may be used uninitialized in this function [-Wmaybe-uninitialized] make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 34%] Linking CXX shared module ../../lib64/painterformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/painterformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/painterformat.so CMakeFiles/painterformat.dir/painterformat.cpp.o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -lm -ldl -lz -lcairo 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src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 33%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opsplit.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opsplit.cpp: In member function 'virtual bool OpenBabel::OpSplit::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opsplit.cpp:92:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 92 | if(!pConv) | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opsplit.cpp:95:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 95 | if(pConv->IsFirstInput()) | ^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/loader.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/loader.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/gen3d.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dsvgformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -MF CMakeFiles/svgformat.dir/svgformat.cpp.o.d -o CMakeFiles/svgformat.dir/svgformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/svgformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/svgformat.cpp: In member function 'virtual bool OpenBabel::SVGFormat::WriteChemObject(OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/svgformat.cpp:222:42: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 222 | bool nomore = _nmax && (_objects.size()==_nmax); | ~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/svgformat.cpp:244:18: warning: unused variable 'n' [-Wunused-variable] 244 | unsigned int n=0; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/svgformat.cpp: In member function 'virtual bool OpenBabel::SVGFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/svgformat.cpp:269:8: warning: unused variable 'ret' [-Wunused-variable] 269 | bool ret = WriteSVG(pConv,_objects); | ^~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 35%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dtextformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -MF CMakeFiles/textformat.dir/textformat.cpp.o.d -o CMakeFiles/textformat.dir/textformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/textformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 35%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dtitleformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -MF CMakeFiles/titleformat.dir/titleformat.cpp.o.d -o CMakeFiles/titleformat.dir/titleformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/titleformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Linking CXX shared module ../../lib64/textformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/textformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 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/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/titleformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/titleformat.so CMakeFiles/titleformat.dir/titleformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 37%] Built target titleformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/partialcharges.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpngformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -MF CMakeFiles/pngformat.dir/pngformat.cpp.o.d -o CMakeFiles/pngformat.dir/pngformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pngformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 37%] Linking CXX shared module ../../lib64/pngformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pngformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pngformat.so CMakeFiles/pngformat.dir/pngformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 37%] Built target pngformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 33%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/unique.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/unique.cpp:23: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const string&, const string&) const': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:150:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 150 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:150:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 150 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:155:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 155 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:155:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 155 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dacesformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -MF CMakeFiles/acesformat.dir/acesformat.cpp.o.d -o CMakeFiles/acesformat.dir/acesformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/acesformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 24%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dsmilesformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBSmilesParser::ParseSmiles(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:587:15: warning: variable 'atom' set but not used [-Wunused-but-set-variable] 587 | OBAtom* atom; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp: In member function 'std::vector OpenBabel::OBMol2Cansmi::GetCanonClosureDigits(OpenBabel::OBAtom*, OpenBabel::OBBitVec&, std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:3482:11: warning: unused variable 'bo' [-Wunused-variable] 3482 | int bo = (bond1->IsAromatic())? 1 : bond1->GetBO(); // CJ: why was this line added? bo is never used? | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp: In member function 'void OpenBabel::OBMol2Cansmi::CreateFragCansmiString(OpenBabel::OBMol&, OpenBabel::OBBitVec&, bool, char*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:4066:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4066 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4072 | for (int i=0; i&, std::vector&, char*, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:2989:20: warning: '%d' directive writing between 1 and 5 bytes into a region of size 4 [-Wformat-overflow=] 2989 | sprintf(iso,"%d",atom->GetIsotope()); | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:2989:19: note: directive argument in the range [1, 65535] 2989 | sprintf(iso,"%d",atom->GetIsotope()); | ^~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:22: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 2 and 6 bytes into a destination of size 4 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:3037:29: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 3037 | sprintf(tcount,"%d", hcount); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:22: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 31%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpovrayformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -MF CMakeFiles/povrayformat.dir/povrayformat.cpp.o.d -o CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/povrayformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/povrayformat.cpp: In member function 'void OpenBabel::PovrayFormat::OutputHeader(std::ostream&, OpenBabel::OBMol&, std::string)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/povrayformat.cpp:168:12: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] 168 | size_t time_res; /* Result of strftime */ | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/povrayformat.cpp: In member function 'virtual bool OpenBabel::PovrayFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/povrayformat.cpp:802:17: warning: unused variable 'title' [-Wunused-variable] 802 | const char* title = pmol->GetTitle(); | ^~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 37%] Linking CXX shared module ../../lib64/inchiformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.cpp.o CMakeFiles/inchiformat.dir/getinchi.cpp.o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 39%] Built target inchiformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 37%] Linking CXX shared module ../../lib64/acesformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/acesformat.so CMakeFiles/acesformat.dir/acesformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 39%] Built target acesformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 38%] Linking CXX shared module ../../lib64/povrayformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 40%] Built target povrayformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/readconformers.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 39%] Linking CXX shared module ../../lib64/smilesformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Built target smilesformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Building CXX object src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dconfabreport_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o -MF CMakeFiles/confabreport.dir/confabreport.cpp.o.d -o CMakeFiles/confabreport.dir/confabreport.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/confabreport.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/confabreport.cpp: In member function 'void OpenBabel::ConfabReport::WriteOutput(std::ostream&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/confabreport.cpp:128:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 128 | for (int i=1; i < binvals.size(); i++) | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/confabreport.cpp:133:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 133 | for (int i=1; i < cumbins.size(); i++) | ~~^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Linking CXX shared module ../../lib64/confabreport.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/confabreport.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/confabreport.so CMakeFiles/confabreport.dir/confabreport.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Built target confabreport make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 37%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dabinitformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -MF CMakeFiles/abinitformat.dir/abinitformat.cpp.o.d -o CMakeFiles/abinitformat.dir/abinitformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/abinitformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/abinitformat.cpp: In member function 'virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/abinitformat.cpp:91:12: warning: variable 'acell' set but not used [-Wunused-but-set-variable] 91 | double acell[3]; // scale of lattice vectors | ^~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/ophighlight.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Linking CXX shared module ../../lib64/abinitformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/abinitformat.so CMakeFiles/abinitformat.dir/abinitformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Built target abinitformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 37%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Daoforceformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -MF CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o.d -o CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/aoforceformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Linking CXX shared module ../../lib64/aoforceformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/aoforceformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/aoforceformat.so CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Built target aoforceformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opisomorph.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opisomorph.cpp: In member function 'virtual bool OpenBabel::OpNewS::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opisomorph.cpp:300:28: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 300 | if(pmol->NumHvyAtoms() != nPatternAtoms) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 39%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Ddaltonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -MF CMakeFiles/daltonformat.dir/daltonformat.cpp.o.d -o CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/daltonformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/daltonformat.cpp: In member function 'virtual bool OpenBabel::DALTONInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/daltonformat.cpp:142:9: warning: variable 'atomcount' set but not used [-Wunused-but-set-variable] 142 | int atomcount = 0; // for each atom type | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/daltonformat.cpp: In member function 'virtual bool OpenBabel::DALTONInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/daltonformat.cpp:306:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 306 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/daltonformat.cpp:326:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 326 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 40%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Ddmolformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -MF CMakeFiles/dmolformat.dir/dmolformat.cpp.o.d -o CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/dmolformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Linking CXX shared module ../../lib64/daltonformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/daltonformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Built target daltonformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Linking CXX shared module ../../lib64/dmolformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/sort.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/sort.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Built target dmolformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 37%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcastepformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -MF CMakeFiles/castepformat.dir/castepformat.cpp.o.d -o CMakeFiles/castepformat.dir/castepformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/castepformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/castepformat.cpp: In member function 'virtual bool OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/castepformat.cpp:187:21: warning: 'volume' may be used uninitialized in this function [-Wmaybe-uninitialized] 187 | pv = volume * pressure * GPA_A3_TO_KCAL_PER_MOL; | ~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/castepformat.cpp:187:21: warning: 'pressure' may be used uninitialized in this function [-Wmaybe-uninitialized] make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/xout.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/xout.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Linking CXX shared module ../../lib64/castepformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/castepformat.so CMakeFiles/castepformat.dir/castepformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Built target castepformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 37%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dadfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -MF CMakeFiles/adfformat.dir/adfformat.cpp.o.d -o CMakeFiles/adfformat.dir/adfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp: In member function 'bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:590:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 590 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:590:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 590 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:603:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 603 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:603:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 603 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:625:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 625 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:625:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 625 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:640:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 640 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:640:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 640 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:655:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 655 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:655:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 655 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -MF CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o.d -o CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fhiaimsformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Linking CXX shared module ../../lib64/adfformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/adfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/adfformat.so CMakeFiles/adfformat.dir/adfformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD 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src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opalign.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build make[2]: Entering directory 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/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/hinformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 28%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/eqeq.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Linking CXX shared module ../../lib64/hinformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/hinformat.so CMakeFiles/hinformat.dir/hinformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Built target hinformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfchkformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fchkformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fchkformat.cpp: In member function 'virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fchkformat.cpp:587:40: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 587 | if (alphaorb_found && (numAOrb > alphaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fchkformat.cpp:600:40: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 600 | if (betaorb_found && (numBOrb > betaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fchkformat.cpp:691:40: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 691 | if (numAOrb > 0 && alphaorb.size() == numAOrb) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fchkformat.cpp:695:41: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 695 | if (numBOrb > 0 && betaorb.size() == numBOrb) { // open shell calculation | ~~~~~~~~~~~~~~~^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opconfab.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opconfab.cpp: In member function 'void OpenBabel::OpConfab::Run(OpenBabel::OBConversion*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opconfab.cpp:160:14: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 160 | for (; c < mol.NumConformers(); ++c) { | ~~^~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Linking CXX shared module ../../lib64/fchkformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fchkformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fchkformat.so CMakeFiles/fchkformat.dir/fchkformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory 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'/usr/src/RPM/BUILD/openbabel-2.4.1' [ 45%] Built target gulpformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -MF CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o.d -o CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gausscubeformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gausscubeformat.cpp: In member function 'virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gausscubeformat.cpp:425:25: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 425 | while (vgd.size() < nCubes) | ~~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gausscubeformat.cpp:472:26: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 472 | while (values.size() < n*nCubes) | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gausscubeformat.cpp:107:17: warning: unused variable 'title' [-Wunused-variable] 107 | const char* title = pConv->GetTitle(); | ^~~~~ make[2]: Leaving directory 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-DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpwscfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -MF CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o.d -o CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pwscfformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmolproformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o -MF CMakeFiles/molproformat.dir/molproformat.cpp.o.d -o CMakeFiles/molproformat.dir/molproformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/molproformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 46%] Linking CXX shared module ../../lib64/pwscfformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 47%] Built target pwscfformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 47%] Linking CXX shared module ../../lib64/molproformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/molproformat.so CMakeFiles/molproformat.dir/molproformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 47%] Built target molproformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmopacformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o -MF CMakeFiles/mopacformat.dir/mopacformat.cpp.o.d -o CMakeFiles/mopacformat.dir/mopacformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mopacformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mopacformat.cpp: In member function 'virtual bool OpenBabel::MOPACCARTFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mopacformat.cpp:642:19: warning: variable 'isotopeMass' set but not used [-Wunused-but-set-variable] 642 | double x,y,z, isotopeMass; | ^~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/atom.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:42, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mopacformat.cpp:17: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/vector3.h: In member function 'virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/vector3.h:91:11: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized] 91 | _vy = inY; | ~~~~^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mopacformat.cpp:73:14: note: 'y' was declared here 73 | double x,y,z; | ^ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/atom.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:42, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mopacformat.cpp:17: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/vector3.h:90:11: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized] 90 | _vx = inX; | ~~~~^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mopacformat.cpp:73:12: note: 'x' was declared here 73 | double x,y,z; | ^ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 45%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dturbomoleformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -MF CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o.d -o CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/turbomoleformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 47%] Linking CXX shared module ../../lib64/mopacformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 47%] Built target mopacformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 42%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgaussformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -MF CMakeFiles/gaussformat.dir/gaussformat.cpp.o.d -o CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp: In function 'void OpenBabel::add_unique_pairdata_to_mol(OpenBabel::OBMol*, std::string, std::string, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:275:19: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 275 | if (vs.size() >= start) | ~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:278:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 278 | for(i=start+1; (i)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:332:17: warning: unused variable 'pg' [-Wunused-variable] 332 | const char *pg = obPG.IdentifyPointGroup(); | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp: In member function 'virtual bool OpenBabel::GaussianOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:1164:25: warning: 'CV' may be used uninitialized in this function [-Wmaybe-uninitialized] 1164 | extract_thermo(&mol,thermo_method,temperature,ezpe, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1165 | Hcorr,Gcorr,E0,CV,RotSymNum,Scomponents); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:1164:25: warning: 'E0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:1164:25: warning: 'Gcorr' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:1164:25: warning: 'Hcorr' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:1164:25: warning: 'ezpe' may be used uninitialized in this function [-Wmaybe-uninitialized] make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 47%] Linking CXX shared module ../../lib64/turbomoleformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 47%] Built target turbomoleformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 45%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dzindoformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o -MF CMakeFiles/zindoformat.dir/zindoformat.cpp.o.d -o CMakeFiles/zindoformat.dir/zindoformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/zindoformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 47%] Linking CXX shared module ../../lib64/gaussformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 48%] Built target gaussformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 45%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dxsfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o -MF CMakeFiles/xsfformat.dir/xsfformat.cpp.o.d -o CMakeFiles/xsfformat.dir/xsfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xsfformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 48%] Linking CXX shared module ../../lib64/zindoformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/zindoformat.so CMakeFiles/zindoformat.dir/zindoformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 48%] Built target zindoformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 48%] Linking CXX shared module ../../lib64/xsfformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/xsfformat.so CMakeFiles/xsfformat.dir/xsfformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 48%] Built target xsfformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dqchemformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o -MF CMakeFiles/qchemformat.dir/qchemformat.cpp.o.d -o CMakeFiles/qchemformat.dir/qchemformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/qchemformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 47%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o -MF CMakeFiles/APIInterface.dir/APIInterface.cpp.o.d -o CMakeFiles/APIInterface.dir/APIInterface.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/APIInterface.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dsiestaformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o -MF CMakeFiles/siestaformat.dir/siestaformat.cpp.o.d -o CMakeFiles/siestaformat.dir/siestaformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/siestaformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/siestaformat.cpp: In member function 'virtual bool OpenBabel::SIESTAFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/siestaformat.cpp:82:10: warning: variable 'coordsAreAngstrom' set but not used [-Wunused-but-set-variable] 82 | bool coordsAreAngstrom = false; | ^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/siestaformat.cpp:88:12: warning: variable 'size' set but not used [-Wunused-but-set-variable] 88 | size_t size; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/siestaformat.cpp:92:30: warning: unused variable 'numSpecies' [-Wunused-variable] 92 | int atomicNum, numAtoms, numSpecies; | ^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 48%] Linking CXX shared module ../../lib64/qchemformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 49%] Built target qchemformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgamessformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -MF CMakeFiles/gamessformat.dir/gamessformat.cpp.o.d -o CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessformat.cpp: In member function 'virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessformat.cpp:227:9: warning: variable 'ndummyatoms' set but not used [-Wunused-but-set-variable] 227 | int ndummyatoms = 0; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessformat.cpp:520:58: warning: 'lowFreqModesEnd' may be used uninitialized in this function [-Wmaybe-uninitialized] 520 | if (numIntens < lowFreqModesBegin || numIntens > lowFreqModesEnd) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessformat.cpp:520:25: warning: 'lowFreqModesBegin' may be used uninitialized in this function [-Wmaybe-uninitialized] 520 | if (numIntens < lowFreqModesBegin || numIntens > lowFreqModesEnd) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 48%] Linking CXX shared module ../../lib64/APIInterface.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/APIInterface.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Built target APIInterface make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dnwchemformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -MF CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o.d -o CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadCoordinates(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:221:72: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 221 | if ((i>=natoms) || (molecule->GetAtom(i+1)->GetAtomicNum() != atoi(vs[2].c_str()))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadMultipoleMoment(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:296:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 296 | else if (vs[0][0] == '1') | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadPartialCharges(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:413:56: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 413 | if (molecule->GetAtom(i++)->GetAtomicNum() != charge) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadMEPCalculation(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:561:25: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 561 | if (energies.size() != molecule->NumConformers()) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadNEBCalculation(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:826:79: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 826 | if (etab.GetAtomicNum(vs[1].substr(0, end_of_symbol).c_str()) != molecule->GetAtom(i+1)->GetAtomicNum()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:914:34: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 914 | if (atoi(buffer) != natoms) | ~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:924:84: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 924 | if ((vs.size() < 4) || (molecule->GetAtom(i+1)->GetAtomicNum() != etab.GetAtomicNum(vs[0].c_str()))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:104:20: warning: 'OpenBabel::BETA_ORBITAL_PATTERN' defined but not used [-Wunused-variable] 104 | static const char* BETA_ORBITAL_PATTERN = "Beta"; | ^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:939:21: warning: 'nbeads' may be used uninitialized in this function [-Wmaybe-uninitialized] 939 | if (bead_number != nbeads) | ^~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:17: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadSinglePointCalculation(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:362:47: warning: 'energy' may be used uninitialized in this function [-Wmaybe-uninitialized] 362 | void SetEnergy(double energy) { _energy = energy; } | ~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:736:12: note: 'energy' was declared here 736 | double energy; | ^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 49%] Linking CXX shared module ../../lib64/siestaformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/siestaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/siestaformat.so CMakeFiles/siestaformat.dir/siestaformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 51%] Built target siestaformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Linking CXX shared module ../../lib64/gamessformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gamessformat.so CMakeFiles/gamessformat.dir/gamessformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 52%] Built target gamessformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 51%] Linking CXX shared module ../../lib64/nwchemformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nwchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/nwchemformat.so CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 52%] Built target nwchemformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 47%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o -MF CMakeFiles/CSRformat.dir/CSRformat.cpp.o.d -o CMakeFiles/CSRformat.dir/CSRformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CSRformat.cpp In file included from /usr/include/string.h:532, from /usr/include/c++/10/cstring:42, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/data.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:45, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CSRformat.cpp:17: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'char* OpenBabel::CSRFormat::PadString(char*, int)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CSRformat.cpp:188:12: /usr/include/bits/string_fortified.h:91:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CSRformat.cpp: In member function 'char* OpenBabel::CSRFormat::PadString(char*, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CSRformat.cpp:188:12: note: length computed here 188 | strncpy(output, input, strlen(input)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 52%] Linking CXX shared module ../../lib64/CSRformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/CSRformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 52%] Built target CSRformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 47%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o -MF CMakeFiles/PQSformat.dir/PQSformat.cpp.o.d -o CMakeFiles/PQSformat.dir/PQSformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/PQSformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/PQSformat.cpp: In member function 'virtual bool OpenBabel::PQSFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/PQSformat.cpp:259:49: warning: 'pFormat' may be used uninitialized in this function [-Wmaybe-uninitialized] 259 | return pFormat->ReadMolecule(&mol,&coordconv); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 45%] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dorcaformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o -MF CMakeFiles/orcaformat.dir/orcaformat.cpp.o.d -o CMakeFiles/orcaformat.dir/orcaformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp: In member function 'virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp:338:33: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 338 | while(vs.size() == nColumn+1) { | ~~~~~~~~~~^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp:353:48: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 353 | for (unsigned int i = 0; i < nColumn; i++) { | ~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp:365:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 365 | for (unsigned int i = 0; i < nColumn; i++) { | ~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp:121:12: warning: unused variable 'energy' [-Wunused-variable] 121 | double energy=0; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp:128:9: warning: variable 'nModeAll' set but not used [-Wunused-but-set-variable] 128 | int nModeAll = 0; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp: In member function 'virtual bool OpenBabel::OrcaInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp:646:10: warning: unused variable 'buffer' [-Wunused-variable] 646 | char buffer[BUFF_SIZE]; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp: In member function 'virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp:210:36: warning: 'atom' may be used uninitialized in this function [-Wmaybe-uninitialized] 210 | atom->SetVector(x,y,z); //set atom coordinates | ~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp:207:37: warning: 'confCoords' may be used uninitialized in this function [-Wmaybe-uninitialized] 207 | confCoords[i*3+2] = z; | ^ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 53%] Linking CXX shared module ../../lib64/PQSformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/PQSformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 53%] Built target PQSformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 48%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dacrformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o -MF CMakeFiles/acrformat.dir/acrformat.cpp.o.d -o CMakeFiles/acrformat.dir/acrformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/acrformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/acrformat.cpp: In member function 'virtual bool OpenBabel::ACRFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/acrformat.cpp:137:40: warning: 'scale' may be used uninitialized in this function [-Wmaybe-uninitialized] 137 | X = atof((char*)vs[6].c_str())/scale; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/acrformat.cpp:159:5: warning: 'bonds' may be used uninitialized in this function [-Wmaybe-uninitialized] 159 | if ( pmol->NumBonds() != bonds ) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/acrformat.cpp:163:12: warning: 'atoms' may be used uninitialized in this function [-Wmaybe-uninitialized] 163 | } else if ( pmol->NumAtoms() != atoms ) { | ^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats 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-I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -MF CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o.d -o CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/alchemyformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 49%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Damberformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o -MF CMakeFiles/amberformat.dir/amberformat.cpp.o.d -o CMakeFiles/amberformat.dir/amberformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/amberformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 53%] Linking CXX shared module ../../lib64/orcaformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings 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'/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Linking CXX shared module ../../lib64/acrformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/acrformat.so CMakeFiles/acrformat.dir/acrformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Linking CXX shared module ../../lib64/alchemyformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/alchemyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/alchemyformat.so CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dbalstformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o -MF CMakeFiles/balstformat.dir/balstformat.cpp.o.d -o CMakeFiles/balstformat.dir/balstformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/balstformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Built target alchemyformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Built target acrformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Linking CXX shared module ../../lib64/amberformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/amberformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/amberformat.so CMakeFiles/amberformat.dir/amberformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Built target amberformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 45%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dvaspformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o -MF CMakeFiles/vaspformat.dir/vaspformat.cpp.o.d -o CMakeFiles/vaspformat.dir/vaspformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp:438:17: warning: unused variable 'freqnum' [-Wunused-variable] 438 | int freqnum = atoi(vs[0].c_str()); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp:657:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 657 | for(int i = 0; i < atoms_sorted.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp:668:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 668 | if(atomicNums.size() > 0); | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp:669:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 669 | atomicNums.rbegin()->second++; | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp:397:21: warning: 'fermi' may be used uninitialized in this function [-Wmaybe-uninitialized] 397 | dos->SetData(fermi, energies, densities, integration); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp:752:26: warning: 'atom' may be used uninitialized in this function [-Wmaybe-uninitialized] 752 | if (atom->HasData("move")) { | ~~~~~~~~~~~~~^~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Linking CXX shared module ../../lib64/balstformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/balstformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/balstformat.so CMakeFiles/balstformat.dir/balstformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Built target balstformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 52%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcacheformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o -MF CMakeFiles/cacheformat.dir/cacheformat.cpp.o.d -o CMakeFiles/cacheformat.dir/cacheformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cacheformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Linking CXX shared module ../../lib64/vaspformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/vaspformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/vaspformat.so CMakeFiles/vaspformat.dir/vaspformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 52%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dboxformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o -MF CMakeFiles/boxformat.dir/boxformat.cpp.o.d -o CMakeFiles/boxformat.dir/boxformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/boxformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Built target vaspformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Linking CXX shared module ../../lib64/cacheformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacheformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cacheformat.so CMakeFiles/cacheformat.dir/cacheformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 57%] Built target cacheformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 52%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcacaoformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -MF CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o.d -o CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cacaoformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 57%] Linking CXX shared module ../../lib64/boxformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/boxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/boxformat.so CMakeFiles/boxformat.dir/boxformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 57%] Built target boxformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 52%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dbgfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o -MF CMakeFiles/bgfformat.dir/bgfformat.cpp.o.d -o CMakeFiles/bgfformat.dir/bgfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/bgfformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 57%] Linking CXX shared module ../../lib64/cacaoformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacaoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Built target cacaoformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 57%] Linking CXX shared module ../../lib64/bgfformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/bgfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/bgfformat.so CMakeFiles/bgfformat.dir/bgfformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Built target bgfformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 45%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgamessukformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -MF CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o.d -o CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadInitialCartesian(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp:779:10: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 779 | bool ok=false; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz1(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp:845:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 845 | bool ok=false; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz2(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp:892:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 892 | bool ok=false; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp: In member function 'virtual bool OpenBabel::GAMESSUKOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp:1207:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 1207 | bool ok; | ^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Linking CXX shared module ../../lib64/gamessukformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessukformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gamessukformat.so CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Built target gamessukformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 53%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcarformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/carformat.dir/carformat.cpp.o -MF CMakeFiles/carformat.dir/carformat.cpp.o.d -o CMakeFiles/carformat.dir/carformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/carformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcccformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o -MF CMakeFiles/cccformat.dir/cccformat.cpp.o.d -o CMakeFiles/cccformat.dir/cccformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cccformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Linking CXX shared module ../../lib64/carformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake 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'/usr/src/RPM/BUILD/openbabel-2.4.1' [ 59%] Linking CXX shared module ../../lib64/cccformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cccformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cccformat.so CMakeFiles/cccformat.dir/cccformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 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--color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchem3dformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC 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../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemdrawct_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -MF CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o.d -o CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawct.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 60%] Built target chemtoolformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 60%] Linking CXX shared module ../../lib64/chemdrawct.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawct.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 61%] Built target chemdrawct make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 60%] Linking CXX shared module ../../lib64/chem3dformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chem3dformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake 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/usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 57%] Building CXX object src/formats/CMakeFiles/cssrformat.dir/cssrformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcssrformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cssrformat.dir/cssrformat.cpp.o -MF CMakeFiles/cssrformat.dir/cssrformat.cpp.o.d -o CMakeFiles/cssrformat.dir/cssrformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cssrformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 61%] Linking CXX shared module ../../lib64/cssrformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcrkformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o -MF CMakeFiles/crkformat.dir/crkformat.cpp.o.d -o CMakeFiles/crkformat.dir/crkformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp: In static member function 'static bool OpenBabel::CRK2DFormat::ReadCRK(std::istream&, OpenBabel::OBMol&, const char*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:304:38: warning: 'bondStyle' may be used uninitialized in this function [-Wmaybe-uninitialized] 304 | stbondStyle[numBonds]=bondStyle; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:302:35: warning: 'bondTo' may be used uninitialized in this function [-Wmaybe-uninitialized] 302 | stbondTo[numBonds]=bondTo; | ~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:301:37: warning: 'bondFrom' may be used uninitialized in this function [-Wmaybe-uninitialized] 301 | stbondFrom[numBonds]=bondFrom; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:287:36: warning: 'atomCharge' may be used uninitialized in this function [-Wmaybe-uninitialized] 287 | atm.SetFormalCharge((int)atomCharge); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:286:30: warning: 'atomZ' may be used uninitialized in this function [-Wmaybe-uninitialized] 286 | atm.SetVector(atomX,atomY,atomZ); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:286:30: warning: 'atomY' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:286:30: warning: 'atomX' may be used uninitialized in this function [-Wmaybe-uninitialized] In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:42, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:16: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/atom.h:144:52: warning: 'atomNumber' may be used uninitialized in this function [-Wmaybe-uninitialized] 144 | void SetAtomicNum(int atomicnum) { _ele = (char)atomicnum; } | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:241:16: note: 'atomNumber' was declared here 241 | int atomID,atomNumber; | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:283:37: warning: 'atomID' may be used uninitialized in this function [-Wmaybe-uninitialized] 283 | statomID[numAtoms++]=atomID; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 61%] Built target cssrformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 61%] Linking CXX shared module ../../lib64/crkformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/crkformat.so CMakeFiles/crkformat.dir/crkformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 61%] Built target crkformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfeatformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/featformat.dir/featformat.cpp.o -MF CMakeFiles/featformat.dir/featformat.cpp.o.d -o CMakeFiles/featformat.dir/featformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/featformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfastaformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o -MF CMakeFiles/fastaformat.dir/fastaformat.cpp.o.d -o CMakeFiles/fastaformat.dir/fastaformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fastaformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fastaformat.cpp: In function 'void OpenBabel::add_residue(OpenBabel::OBMol*, OpenBabel::OBResidue*, double, double, long unsigned int&, OpenBabel::ResidueRecord*, int, OpenBabel::OBAtom*&, bool, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fastaformat.cpp:387:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 387 | else if (atom_count > resBondFromOffset) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dexyzformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o -MF CMakeFiles/exyzformat.dir/exyzformat.cpp.o.d -o CMakeFiles/exyzformat.dir/exyzformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/exyzformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/exyzformat.cpp: In member function 'virtual bool OpenBabel::EXYZFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/exyzformat.cpp:118:19: warning: variable 'virtualAtoms' set but not used [-Wunused-but-set-variable] 118 | bool unitCell,virtualAtoms; | ^~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 61%] Linking CXX shared module ../../lib64/featformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/featformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/featformat.so CMakeFiles/featformat.dir/featformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 61%] Built target featformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 61%] Linking CXX shared module ../../lib64/fastaformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 61%] Linking CXX shared module ../../lib64/exyzformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/exyzformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/exyzformat.so CMakeFiles/exyzformat.dir/exyzformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 61%] Built target fastaformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 61%] Built target exyzformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 60%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfhformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o -MF CMakeFiles/fhformat.dir/fhformat.cpp.o.d -o CMakeFiles/fhformat.dir/fhformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fhformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfastsearchformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -MF CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o.d -o CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fastsearchformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fastsearchformat.cpp: In member function 'void OpenBabel::FastSearchFormat::AddPattern(std::vector&, OpenBabel::OBMol, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fastsearchformat.cpp:668:11: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 668 | if(idx>=patternMol.NumBonds()) | ~~~^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 48%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -MF CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o.d -o CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp: In member function 'void OpenBabel::MCDLFormat::solve(int, int (*)[4], int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:278:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 278 | if (jflag) | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:282:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 282 | nt = 1; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp: In member function 'std::string OpenBabel::MCDLFormat::getMCDL(OpenBabel::OBMol*, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:529:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] 529 | bool test;//, testParity; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp: In member function 'void OpenBabel::MCDLFormat::setMCDL(std::string, OpenBabel::OBMol*, std::string&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:1266:15: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1266 | if (nPrev == acount) { | ~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp: In member function 'int OpenBabel::MCDLFormat::indexOf(std::string, std::string, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:1384:16: warning: comparison of integer expressions of different signedness: 'int' and 'const size_type' {aka 'const long unsigned int'} [-Wsign-compare] 1384 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:1385:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1385 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp: In member function 'int OpenBabel::MCDLFormat::lastIndexOf(std::string, std::string)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:1398:11: warning: comparison of integer expressions of different signedness: 'int' and 'const size_type' {aka 'const long unsigned int'} [-Wsign-compare] 1398 | if (n == string::npos) | ~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp: In member function 'void OpenBabel::MCDLFormat::solve(int, int (*)[4], int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:395:22: warning: 'dupfrag' may be used uninitialized in this function [-Wmaybe-uninitialized] 395 | else if (ix[i] == dupfrag && j != dupnum) | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:394:35: warning: 'jump' may be used uninitialized in this function [-Wmaybe-uninitialized] 394 | ix[i] = mx[i] + jump + 1; | ~~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:385:24: warning: 'numdups' may be used uninitialized in this function [-Wmaybe-uninitialized] 385 | for (j=0; jAddAtom(atom); | ~~~~~~~~~~~~^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 69%] Linking CXX shared module ../../lib64/groformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/groformat.so CMakeFiles/groformat.dir/groformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 69%] Built target groformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 68%] Linking CXX shared module ../lib64/plugin_charges.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.cpp.o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o CMakeFiles/plugin_charges.dir/charges/none.cpp.o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -lm -ldl -lz ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 69%] Built target plugin_charges make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 65%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmpqcformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -MF CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o.d -o CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mpqcformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 65%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmpdformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o -MF CMakeFiles/mpdformat.dir/mpdformat.cpp.o.d -o CMakeFiles/mpdformat.dir/mpdformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mpdformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mpdformat.cpp: In member function 'virtual bool OpenBabel::MPDFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mpdformat.cpp:204:42: warning: variable 'idx_true' set but not used [-Wunused-but-set-variable] 204 | bool xml_true=false, pre_true=false, idx_true=false; | ^~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Linking CXX shared module ../../lib64/mpqcformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Built target mpqcformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 65%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmsiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o -MF CMakeFiles/msiformat.dir/msiformat.cpp.o.d -o CMakeFiles/msiformat.dir/msiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp: In member function 'virtual bool OpenBabel::MSIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp:71:17: warning: unused variable 'title' [-Wunused-variable] 71 | const char* title = pConv->GetTitle(); | ^~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:51, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp:15: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/generic.h:366:60: warning: 'sg' may be used uninitialized in this function [-Wmaybe-uninitialized] 366 | void SetSpaceGroup(const SpaceGroup* sg) { _spaceGroup = sg; } | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp:106:23: note: 'sg' was declared here 106 | const SpaceGroup *sg; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp:189:28: warning: 'atom' may be used uninitialized in this function [-Wmaybe-uninitialized] 189 | atom->SetVector(atof(vs[3].c_str()), | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 190 | atof(vs[4].c_str()), | ~~~~~~~~~~~~~~~~~~~~ 191 | atof(vs[5].c_str())); | ~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp:235:24: warning: 'bondOrder' may be used uninitialized in this function [-Wmaybe-uninitialized] 235 | mol.AddBond(startBondAtom - 1, endBondAtom - 1, bondOrder); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp:235:56: warning: 'endBondAtom' may be used uninitialized in this function [-Wmaybe-uninitialized] 235 | mol.AddBond(startBondAtom - 1, endBondAtom - 1, bondOrder); | ~~~~~~~~~~~~^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp:235:39: warning: 'startBondAtom' may be used uninitialized in this function [-Wmaybe-uninitialized] 235 | mol.AddBond(startBondAtom - 1, endBondAtom - 1, bondOrder); | ~~~~~~~~~~~~~~^~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 64%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmmodformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o -MF CMakeFiles/mmodformat.dir/mmodformat.cpp.o.d -o CMakeFiles/mmodformat.dir/mmodformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mmodformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Linking CXX shared module ../../lib64/mpdformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpdformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Built target mpdformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 66%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmsmsformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o -MF CMakeFiles/msmsformat.dir/msmsformat.cpp.o.d -o CMakeFiles/msmsformat.dir/msmsformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msmsformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Linking CXX shared module ../../lib64/msiformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/msiformat.so CMakeFiles/msiformat.dir/msiformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Linking CXX shared module ../../lib64/mmodformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mmodformat.so CMakeFiles/mmodformat.dir/mmodformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Built target msiformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Built target mmodformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 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Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Linking CXX shared module ../../lib64/msmsformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msmsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/msmsformat.so CMakeFiles/msmsformat.dir/msmsformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Built target msmsformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend make[2]: Entering directory 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/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/outformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 66%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dopendxformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o -MF CMakeFiles/opendxformat.dir/opendxformat.cpp.o.d -o CMakeFiles/opendxformat.dir/opendxformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/opendxformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Linking CXX shared module ../../lib64/outformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/outformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/outformat.so CMakeFiles/outformat.dir/outformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 61%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dlmpdatformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -MF CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o.d -o CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp: In member function 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:271:13: warning: unused variable 'length' [-Wunused-variable] 271 | double length=cmax-cmin; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:361:11: warning: unused variable 'atomid' [-Wunused-variable] 361 | int atomid=5; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:362:14: warning: unused variable 'charge' [-Wunused-variable] 362 | double charge=0.5; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:528:38: warning: '%11s' directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32695 and 32736 [-Wformat-truncation=] 528 | "%-4d %4d %4d %4d %4d %4d # %11s\n", | ^~~~ ...... 535 | DihedralString); | ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:15: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 45 and 32842 bytes into a destination of size 32768 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:510:38: warning: '%11s' directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32695 and 32736 [-Wformat-truncation=] 510 | "%-4d %4d %4d %4d %4d %4d # %11s\n", | ^~~~ ...... 517 | DihedralString); | ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:15: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 45 and 32842 bytes into a destination of size 32768 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:415:29: warning: '%5s' directive output may be truncated writing between 5 and 32767 bytes into a region of size between 32719 and 32746 [-Wformat-truncation=] 415 | "%-4d %4d %4d %4d # %5s\n", | ^~~ ...... 420 | BondString); | ~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:15: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 29 and 32818 bytes into a destination of size 32768 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:401:29: warning: '%5s' directive output may be truncated writing between 5 and 32767 bytes into a region of size between 32719 and 32746 [-Wformat-truncation=] 401 | "%-4d %4d %4d %4d # %5s\n", | ^~~ ...... 406 | BondString); | ~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:15: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 29 and 32818 bytes into a destination of size 32768 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 69%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpcmodelformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -MF CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o.d -o CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pcmodelformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Built target outformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcifformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o -MF CMakeFiles/cifformat.dir/cifformat.cpp.o.d -o CMakeFiles/cifformat.dir/cifformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cifformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cifformat.cpp: In member function 'void OpenBabel::CIFData::CalcMatrices()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cifformat.cpp:900:11: warning: variable 'aa' set but not used [-Wunused-but-set-variable] 900 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cifformat.cpp:900:14: warning: variable 'bb' set but not used [-Wunused-but-set-variable] 900 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cifformat.cpp:900:27: warning: variable 'betaa' set but not used [-Wunused-but-set-variable] 900 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cifformat.cpp:900:33: warning: variable 'gammaa' set but not used [-Wunused-but-set-variable] 900 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Linking CXX shared module ../../lib64/opendxformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 71%] Built target opendxformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Linking CXX shared module ../../lib64/lmpdatformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Linking CXX shared module ../../lib64/cifformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cifformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cifformat.so CMakeFiles/cifformat.dir/cifformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Linking CXX shared module ../../lib64/pcmodelformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 71%] Built target lmpdatformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 71%] Built target cifformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 71%] Built target pcmodelformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 64%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmoldenformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o -MF CMakeFiles/moldenformat.dir/moldenformat.cpp.o.d -o CMakeFiles/moldenformat.dir/moldenformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/moldenformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 62%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dlpmdformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -MF CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o.d -o CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp: In member function 'virtual bool OpenBabel::LpmdFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp:190:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 190 | if(int(headers.size()-1)!=tokens.size()) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp:204:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 204 | for(int i=1 ; i < headers.size() ; ++i) //the first element is HDR | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp:237:11: warning: unused variable 'FX' [-Wunused-variable] 237 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp:237:32: warning: unused variable 'FY' [-Wunused-variable] 237 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp:237:53: warning: unused variable 'FZ' [-Wunused-variable] 237 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp: In member function 'virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp:360:18: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 360 | for(int i=0; i < mol.NumAtoms() ; ++i) | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp:376:15: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 376 | for(int i=0;i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 241 | for(int i = 0; i < atom_t_prop.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp:262:33: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 262 | for(unsigned int j = 0; j < atom_t_prop[i].num_of_atoms; j++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp: In member function 'bool OpenBabel::aindx::operator<(const OpenBabel::aindx&) const': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp:321:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 321 | for(int i = 0; i < vs.size(); i++) | ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp: In member function 'virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp:380:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 380 | for(int i = 0; i < vs.size(); i++) | ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp:435:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, unsigned int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 435 | for (int i = 0; i < atypes_def.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp:442:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, unsigned int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 442 | for (int i = 0; i < atypes_def.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp:492:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, unsigned int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 492 | for(int j = 0; j < atypes_def.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpointcloudformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -MF CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o.d -o CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pointcloudformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pointcloudformat.cpp: In member function 'virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pointcloudformat.cpp:217:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 217 | for( int j = 0; j < radius_mult_list.size(); j++ ) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 72%] Linking CXX shared module ../../lib64/mdffformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdffformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mdffformat.so CMakeFiles/mdffformat.dir/mdffformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 72%] Linking CXX shared module ../../lib64/pointcloudformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pointcloudformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pointcloudformat.so CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 72%] Built target mdffformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 72%] Built target pointcloudformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 64%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmmcifformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -MF CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o.d -o CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -c 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src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o -MF CMakeFiles/stlformat.dir/stlformat.cpp.o.d -o CMakeFiles/stlformat.dir/stlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/stlformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/stlformat.cpp: In function 'void OpenBabel::map_sphere(std::vector&, OpenBabel::vector3, double, uint16_t)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/stlformat.cpp:149:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 149 | for( int i=0 ; i < points.size()-2; i++ ) { | ~~^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 72%] Built target shelxformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake --color= make[2]: 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-frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o -MF CMakeFiles/unichemformat.dir/unichemformat.cpp.o.d -o CMakeFiles/unichemformat.dir/unichemformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/unichemformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 71%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dviewmolformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -MF CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o.d -o CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/viewmolformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 71%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dxedformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o -MF CMakeFiles/xedformat.dir/xedformat.cpp.o.d -o CMakeFiles/xedformat.dir/xedformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xedformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 71%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dtinkerformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -MF CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o.d -o CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/tinkerformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/tinkerformat.cpp: In member function 'virtual bool OpenBabel::TinkerFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/tinkerformat.cpp:101:9: warning: unused variable 'atomicNum' [-Wunused-variable] 101 | int atomicNum; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/tinkerformat.cpp: In function 'int OpenBabel::SetMM3Type(OpenBabel::OBAtom*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/tinkerformat.cpp:377:11: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 377 | if (b->GetHyb() == 2) // S=C | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/tinkerformat.cpp:378:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 378 | countNeighborC++; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/tinkerformat.cpp:220:17: warning: unused variable 'c' [-Wunused-variable] 220 | OBAtom *b, *c; // neighbors | ^ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 71%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dthermoformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o -MF CMakeFiles/thermoformat.dir/thermoformat.cpp.o.d -o CMakeFiles/thermoformat.dir/thermoformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/thermoformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Linking CXX shared module ../../lib64/unichemformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/unichemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Built target unichemformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Linking CXX shared module ../../lib64/xedformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xedformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/xedformat.so CMakeFiles/xedformat.dir/xedformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Linking CXX shared module ../../lib64/viewmolformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/viewmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/viewmolformat.so CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Built target xedformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Built target viewmolformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Linking CXX shared module ../../lib64/thermoformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Linking CXX shared module ../../lib64/tinkerformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpqrformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o -MF CMakeFiles/pqrformat.dir/pqrformat.cpp.o.d -o CMakeFiles/pqrformat.dir/pqrformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp: In function 'double OpenBabel::parseAtomCharge(char*, OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp:196:13: warning: unused variable 'atom' [-Wunused-variable] 196 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp: In function 'double OpenBabel::parseAtomRadius(char*, OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp:211:13: warning: unused variable 'atom' [-Wunused-variable] 211 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp: In member function 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp:501:58: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 501 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp:16: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp:518:66: warning: '%-3s' directive output may be truncated writing between 3 and 15 bytes into a region of size 9 [-Wformat-truncation=] 518 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^~~~ ~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp:16: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 5 and 17 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 74%] Built target thermoformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 74%] Built target tinkerformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemdoodlejsonformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 74%] Linking CXX shared module ../../lib64/pqrformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 75%] Built target pqrformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pubchemjsonformat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 72%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dyasaraformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -MF CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o.d -o CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp: In function 'OpenBabel::mobatom* OpenBabel::mob_next(OpenBabel::mobatom*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:39:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 39 | #define mem_inc(POINTER,INC) (*((char**)&(POINTER))+=(INC)) | ~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:221:3: note: in expansion of macro 'mem_inc' 221 | { mem_inc(atom,mob_atomsize(atom)); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp: In member function 'virtual bool OpenBabel::YOBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:368:21: warning: variable 'reslen' set but not used [-Wunused-but-set-variable] 368 | int /*samenames,*/reslen,charged; | ^~~~~~ In file included from /usr/include/string.h:532, from /usr/include/c++/10/cstring:42, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/data.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:45, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:34: In function 'void* memcpy(void*, const void*, size_t)', inlined from 'virtual bool OpenBabel::YOBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:432:82: /usr/include/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' accessing 4 bytes at offsets 0 and 1 overlaps 3 bytes at offset 1 [-Wrestrict] 29 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp: In member function 'virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:562:36: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=] 562 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:34: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 5 and 12 bytes into a destination of size 4 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp: In function 'void OpenBabel::mob_getid(OpenBabel::atomid*, OpenBabel::mobatom*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:239:26: warning: array subscript 4 is above array bounds of 'int32 [4]' {aka 'int [4]'} [-Warray-bounds] 239 | { inscodealtloc=int32le(atom->link[idpos++]); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:186:9: note: while referencing 'OpenBabel::mobatom::link' 186 | int32 link[4]; }; | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:247:60: warning: array subscript 4 is above array bounds of 'int32 [4]' {aka 'int [4]'} [-Warray-bounds] 247 | if (flags&MOB_SEGMENTFLAG) id->segment=atom->link[idpos++]; | ~~~~~~~~~~~~~~~~~~^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:186:9: note: while referencing 'OpenBabel::mobatom::link' 186 | int32 link[4]; }; | ^~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 72%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dxyzformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o -MF CMakeFiles/xyzformat.dir/xyzformat.cpp.o.d -o CMakeFiles/xyzformat.dir/xyzformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xyzformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 76%] Linking CXX shared module ../../lib64/yasaraformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/yasaraformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/yasaraformat.so CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 76%] Built target yasaraformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/babel.dir/build.make tools/CMakeFiles/babel.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/babel.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/babel.dir/build.make tools/CMakeFiles/babel.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 76%] Linking CXX shared module ../../lib64/xyzformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xyzformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/xyzformat.so CMakeFiles/xyzformat.dir/xyzformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 76%] Built target xyzformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obabel.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 72%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Drxnformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o -MF CMakeFiles/rxnformat.dir/rxnformat.cpp.o.d -o CMakeFiles/rxnformat.dir/rxnformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/rxnformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/rxnformat.cpp: In member function 'virtual bool OpenBabel::RXNFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/rxnformat.cpp:228:14: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 228 | for(i=0;iNumReactants();i++) | ~^~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/rxnformat.cpp:235:14: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 235 | for(i=0;iNumProducts();i++) | ~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dsmileyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o -MF CMakeFiles/smileyformat.dir/smileyformat.cpp.o.d -o CMakeFiles/smileyformat.dir/smileyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp: In member function 'void OpenBabel::OpenBabelCallback::setChiral(int, Smiley::Chirality, const std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'NotChiral' not handled in switch [-Wswitch] 153 | switch (chirality) { | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TH1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TH2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'AL1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'AL2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'SP1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'SP2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'SP3' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB3' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB4' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB5' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB6' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB7' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB8' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB9' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB10' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB11' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB12' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB13' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB14' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB15' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB16' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB17' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB18' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB19' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB20' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH3' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH4' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH5' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH6' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH7' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH8' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH9' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH10' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH11' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH12' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH13' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH14' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH15' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH16' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH17' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH18' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH19' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH20' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH21' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH22' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH23' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH24' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH25' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH26' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH27' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH28' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH29' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH30' not handled in switch [-Wswitch] In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:20: /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h: In instantiation of 'void Smiley::Parser::processStereochemistry() [with Callback = OpenBabel::OpenBabelCallback]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:2707:9: required from 'void Smiley::Parser::parse(const string&) [with Callback = OpenBabel::OpenBabelCallback; std::string = std::__cxx11::basic_string]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:365:26: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:2642:43: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2642 | if (m_chiralInfo[i].nbrs.size() != expectedValence && m_exceptions & InvalidChiralValence) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h: In instantiation of 'Smiley::Parser::RingBondInfo::RingBondInfo(int, int, bool, bool, bool, std::size_t) [with Callback = OpenBabel::OpenBabelCallback; std::size_t = long unsigned int]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:2409:41: required from 'void Smiley::Parser::processRingBond(int, std::size_t) [with Callback = OpenBabel::OpenBabelCallback; std::size_t = long unsigned int]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:2429:11: required from 'void Smiley::Parser::parseRingBond() [with Callback = OpenBabel::OpenBabelCallback]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:2507:13: required from 'void Smiley::Parser::parseChain() [with Callback = OpenBabel::OpenBabelCallback]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:2698:9: required from 'void Smiley::Parser::parse(const string&) [with Callback = OpenBabel::OpenBabelCallback; std::string = std::__cxx11::basic_string]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:365:26: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:986:14: warning: 'Smiley::Parser::RingBondInfo::isExplicit' will be initialized after [-Wreorder] 986 | bool isExplicit; | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:981:21: warning: 'std::size_t Smiley::Parser::RingBondInfo::pos' [-Wreorder] 981 | std::size_t pos; | ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:974:9: warning: when initialized here [-Wreorder] 974 | RingBondInfo(int number_, int order_, bool isUp_, bool isDown_, | ^~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 77%] Linking CXX shared module ../../lib64/rxnformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/rxnformat.so CMakeFiles/rxnformat.dir/rxnformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 77%] Built target rxnformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obchiral.dir/build.make tools/CMakeFiles/obchiral.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 69%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpdbqtformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -MF CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o.d -o CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp: In function 'bool OpenBabel::OutputTree(OpenBabel::OBConversion*, OpenBabel::OBMol&, std::ostream&, std::map&, unsigned int, bool, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:580:20: warning: unused variable 'child' [-Wunused-variable] 580 | unsigned int child=i; | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp: In function 'bool OpenBabel::Separate_preserve_charges(OpenBabel::OBMol&, std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:794:9: warning: unused variable 'fragments' [-Wunused-variable] 794 | int fragments = 0; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:747:16: warning: 'unsigned int OpenBabel::AtomsSoFar(const std::map&, unsigned int)' defined but not used [-Wunused-function] 747 | unsigned int AtomsSoFar(const map & tree, unsigned int depth) | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp: In function 'void OpenBabel::OutputAtom(OpenBabel::OBAtom*, std::ostream&, unsigned int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:334:52: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 334 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:24: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:351:60: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 351 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6557, from /usr/include/c++/10/string:55, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:24: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:532, from /usr/include/c++/10/cstring:42, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/data.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:45, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:24: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'virtual bool OpenBabel::PDBQTFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:915:22: /usr/include/bits/string_fortified.h:91:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 10 equals destination size [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obchiral.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obchiral.dir/build.make tools/CMakeFiles/obchiral.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 77%] Linking CXX shared module ../../lib64/smileyformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smileyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/smileyformat.so CMakeFiles/smileyformat.dir/smileyformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 78%] Built target smileyformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obconformer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 78%] Linking CXX shared module ../../lib64/pdbqtformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbqtformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pdbqtformat.so CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 79%] Built target pdbqtformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obenergy.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 74%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dxmlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o -MF CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o.d -o CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/xmlformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o -MF CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o.d -o CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cdxmlformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 74%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpubchem_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o -MF CMakeFiles/pubchem.dir/xml/pubchem.cpp.o.d -o CMakeFiles/pubchem.dir/xml/pubchem.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/pubchem.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 76%] Building CXX object tools/CMakeFiles/babel.dir/babel.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/babel.dir/babel.cpp.o -MF CMakeFiles/babel.dir/babel.cpp.o.d -o CMakeFiles/babel.dir/babel.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/babel.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/tools/babel.cpp: In function 'int main(int, char**)': /usr/src/RPM/BUILD/openbabel-2.4.1/tools/babel.cpp:64:8: warning: unused variable 'inGzip' [-Wunused-variable] 64 | bool inGzip = false; | ^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 72%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Drsmiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -MF CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o.d -o CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/rsmiformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Building CXX object src/formats/CMakeFiles/png2format.dir/png2format.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpng2format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/png2format.dir/png2format.cpp.o -MF CMakeFiles/png2format.dir/png2format.cpp.o.d -o CMakeFiles/png2format.dir/png2format.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/png2format.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/png2format.cpp: In member function 'virtual bool OpenBabel::PNG2Format::WriteChemObject(OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/png2format.cpp:102:42: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 102 | bool nomore = _nmax && (_objects.size()==_nmax); | ~~~~~~~~~~~~~~~^~~~~~~ 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'/usr/src/RPM/BUILD/openbabel-2.4.1' [ 79%] Linking CXX executable ../bin/obabel cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obabel.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obabel.dir/obabel.cpp.o -o ../bin/obabel ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 79%] Built target babel make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 79%] Linking CXX shared module ../../lib64/rsmiformat.so cd 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cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obprobe.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 79%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obconformer.dir/obconformer.cpp.o -MF CMakeFiles/obconformer.dir/obconformer.cpp.o.d -o CMakeFiles/obconformer.dir/obconformer.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obconformer.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 72%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemdrawcdx_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -MF CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o.d -o CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawcdx.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawcdx.cpp: In member function 'bool OpenBabel::ChemDrawBinaryXFormat::DoReaction(OpenBabel::CDXReader&, OpenBabel::OBReaction*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawcdx.cpp:331:25: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 331 | for(unsigned i=0;iNumAtoms();++idx) | ~~~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawcdx.cpp: In member function 'bool OpenBabel::ChemDrawBinaryXFormat::DoFragmentImpl(OpenBabel::CDXReader&, OpenBabel::OBMol*, std::map&, std::map&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawcdx.cpp:454:27: warning: variable 'hasElement' set but not used [-Wunused-but-set-variable] 454 | bool isAlias=false, hasElement=false; | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawcdx.cpp:591:28: warning: 'endIdx' may be used uninitialized in this function [-Wmaybe-uninitialized] 591 | if(!order || !bgnIdx || !endIdx) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawcdx.cpp:591:17: warning: 'bgnIdx' may be used uninitialized in this function [-Wmaybe-uninitialized] 591 | if(!order || !bgnIdx || !endIdx) | ~~~~~~~^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 80%] Linking CXX executable ../bin/obchiral cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obchiral.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obchiral.dir/obchiral.cpp.o -o ../bin/obchiral ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 81%] Built target obchiral make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obprop.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 80%] Linking CXX executable ../bin/obconformer cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obconformer.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obconformer.dir/obconformer.cpp.o -o ../bin/obconformer ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 81%] Built target obconformer make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obrotamer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 81%] Linking CXX shared module ../../lib64/chemdrawcdx.so cd 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-I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obenergy.dir/obenergy.cpp.o -MF CMakeFiles/obenergy.dir/obenergy.cpp.o.d -o CMakeFiles/obenergy.dir/obenergy.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obenergy.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 81%] Built target chemdrawcdx make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 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/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -MF CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o.d -o CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/chemdoodlejsonformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/chemdoodlejsonformat.cpp: In member function 'virtual bool OpenBabel::ChemDoodleJSONFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/chemdoodlejsonformat.cpp:103:30: warning: comparison of integer expressions of different signedness: 'Json::Value::ArrayIndex' {aka 'unsigned int'} and 'int' [-Wsign-compare] 103 | if (inRoot["m"].size() > currentMolIndex) { | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/chemdoodlejsonformat.cpp:159:23: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized] 159 | patom->SetVector(x,y,z); | ~~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/chemdoodlejsonformat.cpp:159:23: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized] make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 74%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -MF CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o.d -o CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp: In member function 'virtual bool OpenBabel::CMLReactFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp:516:12: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 516 | for(i=0;iNumReactants();i++) | ~^~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp:538:12: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 538 | for(i=0;iNumProducts();i++) | ~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp: In member function 'bool OpenBabel::CMLReactFormat::WriteRateData(OpenBabel::OBReaction*, xmlChar*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp:702:9: warning: enumeration value 'ARRHENIUS' not handled in switch [-Wswitch] 702 | switch(pRD->ReactionType) | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp:730:9: warning: enumeration value 'ARRHENIUS' not handled in switch [-Wswitch] 730 | switch(pRD->ReactionType) | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp:730:9: warning: enumeration value 'SRI' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp: In member function 'void OpenBabel::CMLReactFormat::WriteMetadataList(OpenBabel::OBReaction&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp:769:26: warning: unused variable 'C_TITLE' [-Wunused-variable] 769 | static const xmlChar C_TITLE[] = "title"; | ^~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' 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'/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 79%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -MF CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o.d -o 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src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o -MF CMakeFiles/pubchem.dir/xml/xml.cpp.o.d -o CMakeFiles/pubchem.dir/xml/xml.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/xml.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 80%] Building CXX object tools/CMakeFiles/obminimize.dir/obminimize.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obminimize.dir/obminimize.cpp.o -MF 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/usr/src/RPM/BUILD/openbabel-2.4.1/tools/obgen.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Linking CXX shared module ../../lib64/xmlformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xmlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/xmlformat.so CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o CMakeFiles/xmlformat.dir/xml/xml.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm -lxml2 ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Linking CXX shared module 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src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -MF CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o.d -o CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemkinformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemkinformat.cpp: In member function 'bool OpenBabel::ChemKinFormat::ReadReactionQualifierLines(std::istream&, OpenBabel::OBReaction*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemkinformat.cpp:634:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 634 | for(int i=0;iReactionType) | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemkinformat.cpp:905:11: warning: enumeration value 'THREEBODY' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemkinformat.cpp:984:11: warning: enumeration value 'ARRHENIUS' not handled in switch [-Wswitch] 984 | switch(pRD->ReactionType) 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Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Linking CXX executable ../bin/obsym cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obsym.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obsym.dir/obsym.cpp.o -o ../bin/obsym ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obrotate.dir/obrotate.cpp.o -MF CMakeFiles/obrotate.dir/obrotate.cpp.o.d -o CMakeFiles/obrotate.dir/obrotate.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obrotate.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obrotate.cpp: In function 'int main(int, char**)': /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obrotate.cpp:154:21: warning: 'a4' may be used uninitialized in this function [-Wmaybe-uninitialized] 154 | mol.SetTorsion(a1, a2, a3, a4, angle * DEG_TO_RAD); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obrotate.cpp:149:28: warning: 'a3' may be used uninitialized in this function [-Wmaybe-uninitialized] 149 | if ( !a2->IsConnected(a3) ) { | ~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obrotate.cpp:149:28: warning: 'a2' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obrotate.cpp:154:21: warning: 'a1' may be used uninitialized in this function [-Wmaybe-uninitialized] 154 | mol.SetTorsion(a1, a2, a3, a4, angle * DEG_TO_RAD); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 86%] Built target obsym make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib64//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -MD -MT test/CMakeFiles/test_runner.dir/test_runner.cpp.o -MF CMakeFiles/test_runner.dir/test_runner.cpp.o.d -o CMakeFiles/test_runner.dir/test_runner.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/test_runner.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Linking CXX executable ../bin/obrotamer cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotamer.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obrotamer.dir/obrotamer.cpp.o -o ../bin/obrotamer ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/test /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/test /usr/src/RPM/BUILD/openbabel-2.4.1/test/CMakeFiles/test_inchiwrite.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 76%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -MF CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o.d -o CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/pubchemjsonformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/pubchemjsonformat.cpp: In member function 'virtual bool OpenBabel::PubChemJSONFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/pubchemjsonformat.cpp:108:41: warning: comparison of integer expressions of different signedness: 'Json::Value::ArrayIndex' {aka 'unsigned int'} and 'int' [-Wsign-compare] 108 | if (inRoot["PC_Compounds"].size() > currentMolIndex) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/pubchemjsonformat.cpp:119:42: warning: comparison of integer expressions of different signedness: 'Json::Value::ArrayIndex' {aka 'unsigned int'} and 'int' [-Wsign-compare] 119 | if (inRoot["PC_Substances"].size() > currentMolIndex) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 86%] Built target obrotamer make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/test /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/test /usr/src/RPM/BUILD/openbabel-2.4.1/test/CMakeFiles/roundtrip.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 86%] Linking CXX executable ../bin/obprop cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obprop.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obprop.dir/obprop.cpp.o -o ../bin/obprop ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 86%] Built target obprop make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 86%] Linking CXX executable ../bin/obrotate cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotate.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obrotate.dir/obrotate.cpp.o -o ../bin/obrotate ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Built target obrotate make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/scripts /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/scripts /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/CMakeFiles/bindings_python.dir/DependInfo.cmake --color= make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Building CXX object tools/CMakeFiles/obtautomer.dir/obtautomer.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obtautomer.dir/obtautomer.cpp.o -MF CMakeFiles/obtautomer.dir/obtautomer.cpp.o.d -o CMakeFiles/obtautomer.dir/obtautomer.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obtautomer.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Building CXX object tools/CMakeFiles/obthermo.dir/obthermo.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obthermo.dir/obthermo.cpp.o -MF CMakeFiles/obthermo.dir/obthermo.cpp.o.d -o CMakeFiles/obthermo.dir/obthermo.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obthermo.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obthermo.cpp: In function 'int main(int, char**)': /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obthermo.cpp:158:18: warning: unused variable 'Rgas' [-Wunused-variable] 158 | double Rgas = 1.9872041; // cal/mol K | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obthermo.cpp:42:10: warning: variable 'bKJ' set but not used [-Wunused-but-set-variable] 42 | bool bKJ = false; | ^~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Linking CXX executable ../bin/obtautomer cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obtautomer.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obtautomer.dir/obtautomer.cpp.o -o ../bin/obtautomer ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib64//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -MD -MT test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -MF CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o.d -o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/getinchi.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Built target obtautomer make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Linking CXX executable ../bin/obthermo cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obthermo.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obthermo.dir/obthermo.cpp.o -o ../bin/obthermo ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Built target obthermo make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Building CXX object tools/CMakeFiles/obrms.dir/obrms.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obrms.dir/obrms.cpp.o -MF CMakeFiles/obrms.dir/obrms.cpp.o.d -o CMakeFiles/obrms.dir/obrms.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obrms.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -MF CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o.d -o CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/xml.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.cpp.o cd 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--verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obrms.dir/obrms.cpp.o -o ../bin/obrms ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Built target obrms make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Building CXX object tools/CMakeFiles/obdistgen.dir/obdistgen.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obdistgen.dir/obdistgen.cpp.o -MF CMakeFiles/obdistgen.dir/obdistgen.cpp.o.d -o CMakeFiles/obdistgen.dir/obdistgen.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obdistgen.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obdistgen.cpp: In function 'int main(int, char**)': /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obdistgen.cpp:108:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 108 | for (unsigned int n = 0; n < mol.NumConformers();++n) | ~~^~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Linking CXX executable ../bin/obgrep cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgrep.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obgrep.dir/obgrep.cpp.o -o ../bin/obgrep ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Linking CXX executable ../bin/obdistgen cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obdistgen.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags 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'/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Built target obgrep make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Built target obdistgen make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Built target cmlreactformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Building CXX object tools/CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -MF CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o.d -o CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obspectrophore.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 86%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib64//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -MD -MT test/CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o -MF CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o.d -o CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/inchiwrite.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/customwriter.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pubchemjsonformat.dir/json/customwriter.cpp.o -MF CMakeFiles/pubchemjsonformat.dir/json/customwriter.cpp.o.d -o CMakeFiles/pubchemjsonformat.dir/json/customwriter.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp: In member function 'void Json::CustomWriter::writeValue(const Json::Value&, std::string&, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:83:34: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 83 | if (valLine.length() > maxWidth_) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:96:36: warning: comparison of integer expressions of different signedness: 'int' and 'Json::Value::ArrayIndex' {aka 'unsigned int'} [-Wsign-compare] 96 | for ( int index =0; index < value.size(); ++index ) | ~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:104:24: warning: comparison of integer expressions of different signedness: 'int' and 'Json::Value::ArrayIndex' {aka 'unsigned int'} [-Wsign-compare] 104 | if ( index < value.size()-1 ) | ~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:123:34: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 123 | if (valLine.length() > maxWidth_) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Linking CXX executable ../bin/obspectrophore cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obspectrophore.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -o ../bin/obspectrophore ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcmlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o -MF CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o.d -o CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp: In member function 'bool OpenBabel::CMLFormat::DoHCounts()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp:929:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 929 | for(unsigned i=0;isecond - explH;++i) | ~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp: In member function 'void OpenBabel::CMLFormat::WriteMetadataList(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp:1232:26: warning: unused variable 'C_TITLE' [-Wunused-variable] 1232 | static const xmlChar C_TITLE[] = "title"; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp: In member function 'std::string OpenBabel::CMLFormat::getTimestr()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp:1282:12: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] 1282 | size_t time_res; /* Result of strftime */ | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp: In member function 'virtual bool OpenBabel::CMLFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp:1329:26: warning: unused variable 'C_DESCRIPTION' [-Wunused-variable] 1329 | static const xmlChar C_DESCRIPTION[] = "description"; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp: In member function 'bool OpenBabel::CMLFormat::WriteVibrationData(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp:2289:26: warning: unused variable 'C_SCALAR' [-Wunused-variable] 2289 | static const xmlChar C_SCALAR[] = "scalar"; | ^~~~~~~~ make[2]: 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-DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib64//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -MD -MT test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o -MF CMakeFiles/roundtrip.dir/roundtrip.cpp.o.d -o CMakeFiles/roundtrip.dir/roundtrip.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/roundtrip.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Linking CXX executable ../bin/test_inchiwrite cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_inchiwrite.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -o ../bin/test_inchiwrite ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 90%] Built target test_inchiwrite make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 90%] Linking CXX executable ../bin/roundtrip cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/roundtrip.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/roundtrip.dir/roundtrip.cpp.o -o ../bin/roundtrip ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 90%] Built target roundtrip make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.cpp.o -MF CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.cpp.o.d -o CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp: In member function 'void Json::CustomWriter::writeValue(const Json::Value&, std::string&, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:83:34: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 83 | if (valLine.length() > maxWidth_) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:96:36: warning: comparison of integer expressions of different signedness: 'int' and 'Json::Value::ArrayIndex' {aka 'unsigned int'} [-Wsign-compare] 96 | for ( int index =0; index < value.size(); ++index ) | ~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:104:24: warning: comparison of integer expressions of different signedness: 'int' and 'Json::Value::ArrayIndex' {aka 'unsigned int'} [-Wsign-compare] 104 | if ( index < value.size()-1 ) | ~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:123:34: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 123 | if (valLine.length() > maxWidth_) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Building CXX object src/GUI/CMakeFiles/obgui.dir/stdwx.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/. -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/GUI/CMakeFiles/obgui.dir/stdwx.cpp.o -MF CMakeFiles/obgui.dir/stdwx.cpp.o.d -o CMakeFiles/obgui.dir/stdwx.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/stdwx.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/./stdwx.h:50, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/stdwx.cpp:1: /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/./babel.xpm:2:20: warning: 'sample_xpm' defined but not used [-Wunused-variable] 2 | static const char *sample_xpm[] = { | ^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.cpp.o -MF CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.cpp.o.d -o CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/jsoncpp.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 91%] Linking CXX shared module ../../lib64/chemdoodlejsonformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdoodlejsonformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/chemdoodlejsonformat.so CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.cpp.o CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.cpp.o -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 91%] Built target chemdoodlejsonformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib64//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -MD -MT test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o -MF CMakeFiles/test_runner.dir/automorphismtest.cpp.o.d -o CMakeFiles/test_runner.dir/automorphismtest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/automorphismtest.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/test/automorphismtest.cpp: In function 'bool doAutomorphismTest(OpenBabel::OBMol&, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/test/automorphismtest.cpp:15:20: warning: comparison of integer expressions of different signedness: 'std::vector > >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 15 | return (G.size() == numAutomorphisms); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib64//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -MD -MT test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o -MF CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o.d -o CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/canonconsistenttest.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Building CXX object src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/. -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o -MF CMakeFiles/obgui.dir/optswx.cpp.o.d -o CMakeFiles/obgui.dir/optswx.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/optswx.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/optswx.cpp: In member function 'bool DynOptionswx::Construct(const char*, const char*, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/optswx.cpp:223:16: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 223 | if(pdef=strcasestr(pCaption,"default")) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/optswx.cpp:226:17: warning: unused variable 'tok' [-Wunused-variable] 226 | char* tok=strtok(pdef," :-\t(0) : report_error(#exp, __FILE__, __LINE__, FUNCTION_SIGNATURE, false) ) | ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/test/graphsymtest.cpp:109:9: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 109 | if (n != numberOfClasses) { | ~~^~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib64//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -MD -MT test/CMakeFiles/test_runner.dir/multicmltest.cpp.o -MF CMakeFiles/test_runner.dir/multicmltest.cpp.o.d -o CMakeFiles/test_runner.dir/multicmltest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/multicmltest.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Building CXX object src/GUI/CMakeFiles/obgui.dir/OBGUI.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/. -isystem /usr/lib64/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib64/openbabel/2.4.1\"" -MD -MT src/GUI/CMakeFiles/obgui.dir/OBGUI.cpp.o -MF CMakeFiles/obgui.dir/OBGUI.cpp.o.d -o CMakeFiles/obgui.dir/OBGUI.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:26: /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/./selformats.h: In member function 'bool ActiveFormats::Add(wxString&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/./selformats.h:82:52: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 82 | return (ActiveFormatsString.find(format+_T(';')) != -1); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp: In member function 'virtual bool OBGUIApp::OnInit()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:129:21: warning: unused variable 'splash' [-Wunused-variable] 129 | wxSplashScreen* splash = new wxSplashScreen(bitmap, | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp: In member function 'void OBGUIFrame::DisplayInputFiles(wxArrayString)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:766:12: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 766 | for(i=0;iGetCount();iSel++) | ~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp: In member function 'wxString OBGUIFrame::ShortenedPath(const wxString&, const wxWindow&, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:934:10: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 934 | if(pos1==wxNOT_FOUND || pos1+1 == path.length()) return path; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:936:10: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 936 | if(pos1==wxNOT_FOUND || pos1+1 == path.length()) return path; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:943:12: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 943 | if(pos2==wxNOT_FOUND || pos2+1 == tpath.length()) return path; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:946:46: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 946 | if(tpath.find_first_of(_T("/\\"), pos2+1)==wxNOT_FOUND) return path; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp: In member function 'void OBGUIFrame::GetAvailableFormats()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:1000:13: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 1000 | if(pos!=wxString::npos) | ~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:1005:11: warning: variable 'n' set but not used [-Wunused-but-set-variable] 1005 | int n; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp: In member function 'void OBGUIFrame::MakePluginsMenu()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:1101:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1101 | for(int itop=0; itop < topvec.size(); ++itop) | ~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:1109:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1109 | for(int isub=0; isub < subvec.size(); ++isub) | ~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp: In member function 'void CFilenames::OnKeyPress(wxKeyEvent&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:1187:50: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1187 | if(nameWithWildcard.find_first_of(_T("*?"))==wxNOT_FOUND) | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:1203:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1203 | for(i=0;ifpid,0,16*sizeof(char)); resultobj = SWIG_Py_Void(); return resultobj; fail: return NULL; } | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31374:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 31374 | else memset(arg1->fpid,0,16*sizeof(char)); resultobj = SWIG_Py_Void(); return resultobj; fail: return NULL; } | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FptIndexHeader_datafilename_set(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31393:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 31393 | else memset(arg1->datafilename,0,256*sizeof(char)); resultobj = SWIG_Py_Void(); return resultobj; fail: return NULL; } | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31393:55: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 31393 | else memset(arg1->datafilename,0,256*sizeof(char)); resultobj = SWIG_Py_Void(); return resultobj; fail: return NULL; } | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_FastSearchIndexer(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31722:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 31722 | if (!_v) goto check_2; { { int res = SWIG_AsVal_int(argv[2], NULL); _v = SWIG_CheckState(res); } } if (!_v) goto check_2; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31722:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 31722 | if (!_v) goto check_2; { { int res = SWIG_AsVal_int(argv[2], NULL); _v = SWIG_CheckState(res); } } if (!_v) goto check_2; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBDescriptor__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31784:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 31784 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31784:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 31784 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBDescriptor__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31792:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 31792 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31792:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 31792 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBDescriptor_FindType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31808:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 31808 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31808:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 31808 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBDescriptor_Display__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31987:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 31987 | if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return resultobj; fail: if (alloc3 == SWIG_NEWOBJ) delete[] buf3; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31987:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 31987 | if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return resultobj; fail: if (alloc3 == SWIG_NEWOBJ) delete[] buf3; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31988:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 31988 | if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31988:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 31988 | if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBDescriptor_Display__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:32005:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 32005 | if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:32005:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 32005 | if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBDescriptor_AddProperties(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:32075:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 32075 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:32075:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 32075 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBDescriptor_DeleteProperties(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:32088:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 32088 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:32088:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 32088 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_FindType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33485:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 33485 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33485:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 33485 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_FindForceField__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33511:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 33511 | if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33511:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 33511 | if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_FindForceField__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33520:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 33520 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33520:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 33520 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_FindForceField(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33524:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 33524 | if (!_v) goto check_1; return _wrap_OBForceField_FindForceField__SWIG_0(self, argc, argv);} check_1: if (argc == 1) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33524:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 33524 | if (!_v) goto check_1; return _wrap_OBForceField_FindForceField__SWIG_0(self, argc, argv);} check_1: if (argc == 1) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_SetParameterFile(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33541:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 33541 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33541:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 33541 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_GetGrid(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33770:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 33770 | if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return resultobj; fail: if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33770:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 33770 | if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return resultobj; fail: if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_OBFFLog__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:34205:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 34205 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:34205:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 34205 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_LineSearch(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:34627:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 34627 | if (!_v) goto check_1; return _wrap_OBForceField_LineSearch__SWIG_0(self, argc, argv);} check_1: if (argc == 3) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:34627:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 34627 | if (!_v) goto check_1; return _wrap_OBForceField_LineSearch__SWIG_0(self, argc, argv);} check_1: if (argc == 3) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBBuilder_Connect(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35747:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 35747 | if (!_v) goto check_2; return _wrap_OBBuilder_Connect__SWIG_1(self, argc, argv);} check_2: if (argc == 4) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35747:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 35747 | if (!_v) goto check_2; return _wrap_OBBuilder_Connect__SWIG_1(self, argc, argv);} check_2: if (argc == 4) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBOp_FindType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35874:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 35874 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35874:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 35874 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBOp_Do__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35898:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 35898 | if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35898:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 35898 | if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBOp_Do__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35918:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 35918 | if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35918:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 35918 | if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBOp_Do__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35933:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 35933 | if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35933:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 35933 | if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBChargeModel__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36033:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36033 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36033:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36033 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBChargeModel__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36042:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36042 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36042:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36042 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBChargeModel_FindType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36058:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36058 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36058:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36058 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBChargeModel_ComputeCharges__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36087:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36087 | if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36087:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36087 | if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBChemTsfm_Init(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36176:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36176 | if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36176:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36176 | if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36177:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36177 | if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36177:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36177 | if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBIsomorphismMapper_GetInstance__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36384:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36384 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36384:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36384 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_MapsTo(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36667:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36667 | if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36667:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36667 | if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindAutomorphisms__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36701:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36701 | if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36701:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36701 | if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindAutomorphisms__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36732:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36732 | if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36732:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36732 | if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindAutomorphisms__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36757:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36757 | if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36757:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36757 | if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindAutomorphisms__SWIG_6(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36847:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36847 | if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36847:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36847 | if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindAutomorphisms__SWIG_7(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36868:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36868 | if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36868:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36868 | if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindAutomorphisms(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36873:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36873 | if (!_v) goto check_2; { void *vptr = 0; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36873:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36873 | if (!_v) goto check_2; { void *vptr = 0; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36877:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36877 | if (!_v) goto check_2; return _wrap_FindAutomorphisms__SWIG_4(self, argc, argv);} check_2: if (argc == 3) { int _v = 0; { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36877:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36877 | if (!_v) goto check_2; return _wrap_FindAutomorphisms__SWIG_4(self, argc, argv);} check_2: if (argc == 3) { int _v = 0; { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36879:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36879 | if (!_v) goto check_3; { void *vptr = 0; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36879:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36879 | if (!_v) goto check_3; { void *vptr = 0; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36884:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36884 | if (!_v) goto check_5; { void *vptr = 0; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36884:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36884 | if (!_v) goto check_5; { void *vptr = 0; | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36888:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36888 | if (!_v) goto check_5; { { int res = SWIG_AsVal_size_t(argv[3], NULL); _v = SWIG_CheckState(res); } } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36888:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36888 | if (!_v) goto check_5; { { int res = SWIG_AsVal_size_t(argv[3], NULL); _v = SWIG_CheckState(res); } } | ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36889:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36889 | if (!_v) goto check_5; return _wrap_FindAutomorphisms__SWIG_3(self, argc, argv);} check_5: if (argc == 4) { int _v = 0; { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36889:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36889 | if (!_v) goto check_5; return _wrap_FindAutomorphisms__SWIG_3(self, argc, argv);} check_5: if (argc == 4) { int _v = 0; { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36893:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 36893 | if (!_v) goto check_6; return _wrap_FindAutomorphisms__SWIG_6(self, argc, argv);} check_6: if (argc == 4) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36893:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 36893 | if (!_v) goto check_6; return _wrap_FindAutomorphisms__SWIG_6(self, argc, argv);} check_6: if (argc == 4) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_CompileSmilesQuery__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37265:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 37265 | if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37265:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 37265 | if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_CompileSmilesQuery__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37275:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 37275 | if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37275:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 37275 | if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_CanonicalLabels__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37316:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 37316 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37316:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 37316 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_CanonicalLabels__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37348:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 37348 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37348:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 37348 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_CanonicalLabels__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37377:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 37377 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37377:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 37377 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_CanonicalLabels__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37400:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 37400 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37400:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 37400 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBStereo_ContainsSameRefs(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37472:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 37472 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37472:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 37472 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37473:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 37473 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37473:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 37473 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBStereo_ContainsRef(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37487:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 37487 | if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37487:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 37487 | if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBStereo_NumInversions(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37499:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 37499 | if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37499:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 37499 | if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBStereo_Permutated(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37532:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 37532 | if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37532:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 37532 | if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindStereogenicUnits__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38338:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 38338 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38338:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 38338 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindStereogenicUnits__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38362:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 38362 | if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38362:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 38362 | if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38363:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 38363 | if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38363:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 38363 | if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBBitVec(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38400:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 38400 | if (!_v) goto check_2; return _wrap_new_OBBitVec__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38400:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 38400 | if (!_v) goto check_2; return _wrap_new_OBBitVec__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBBitVec_FromVecInt(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38593:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 38593 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38593:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 38593 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBBitVec_FromString(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38608:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 38608 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38608:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 38608 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBBitVec___ior__(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38694:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 38694 | if (!_v) goto check_1; return _wrap_OBBitVec___ior____SWIG_0(self, argc, argv);} check_1: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38694:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 38694 | if (!_v) goto check_1; return _wrap_OBBitVec___ior____SWIG_0(self, argc, argv);} check_1: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBRotorRule(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38798:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 38798 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38798:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 38798 | if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBRotamerList_AddRotamer(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:39982:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 39982 | if (!_v) goto check_1; return _wrap_OBRotamerList_AddRotamer__SWIG_0(self, argc, argv);} check_1: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:39982:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 39982 | if (!_v) goto check_1; return _wrap_OBRotamerList_AddRotamer__SWIG_0(self, argc, argv);} check_1: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:39984:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 39984 | if (!_v) goto check_2; return _wrap_OBRotamerList_AddRotamer__SWIG_1(self, argc, argv);} check_2: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:39984:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 39984 | if (!_v) goto check_2; return _wrap_OBRotamerList_AddRotamer__SWIG_1(self, argc, argv);} check_2: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConformerFilter_IsGood(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:40379:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 40379 | if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:40379:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 40379 | if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConformerScore_Score(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:40543:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 40543 | if (SWIG_IsNewObj(res4)) delete arg4; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:40543:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 40543 | if (SWIG_IsNewObj(res4)) delete arg4; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBAlign__SWIG_6(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41191:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 41191 | if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41191:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 41191 | if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41192:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 41192 | if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41192:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 41192 | if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBAlign_SetRef(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41226:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 41226 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41226:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 41226 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBAlign_SetTarget(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41240:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 41240 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41240:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 41240 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolAtomIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41366:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 41366 | if (!_v) goto check_2; return _wrap_new__OBMolAtomIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41366:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 41366 | if (!_v) goto check_2; return _wrap_new__OBMolAtomIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_SetType__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41579:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 41579 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41579:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 41579 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_SetType__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41591:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 41591 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41591:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 41591 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_GetDistance(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42143:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 42143 | if (!_v) goto check_2; return _wrap__OBMolAtomIter_GetDistance__SWIG_2(self, argc, argv);} check_2: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42143:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 42143 | if (!_v) goto check_2; return _wrap__OBMolAtomIter_GetDistance__SWIG_2(self, argc, argv);} check_2: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_GetAngle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42182:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 42182 | if (!_v) goto check_1; return _wrap__OBMolAtomIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42182:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 42182 | if (!_v) goto check_1; return _wrap__OBMolAtomIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_MatchesSMARTS(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42789:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 42789 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42789:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 42789 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42858:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 42858 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42858:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 42858 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42871:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 42871 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42871:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 42871 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42883:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 42883 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42883:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 42883 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42951:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 42951 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42951:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 42951 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42960:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 42960 | if (!_v) goto check_3; return _wrap__OBMolAtomIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42960:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 42960 | if (!_v) goto check_3; return _wrap__OBMolAtomIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43010:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 43010 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43010:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 43010 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43022:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 43022 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43022:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 43022 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolAtomDFSIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43139:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 43139 | if (!_v) goto check_2; return _wrap_new__OBMolAtomDFSIter__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43139:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 43139 | if (!_v) goto check_2; return _wrap_new__OBMolAtomDFSIter__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_SetType__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43365:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 43365 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43365:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 43365 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_SetType__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43377:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 43377 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43377:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 43377 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_SetType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43381:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 43381 | if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43381:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 43381 | if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_GetDistance(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43932:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 43932 | if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_GetDistance__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43932:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 43932 | if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_GetDistance__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_GetAngle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43973:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 43973 | if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43973:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 43973 | if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_MatchesSMARTS(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44585:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 44585 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44585:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 44585 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44654:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 44654 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44654:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 44654 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44667:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 44667 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44667:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 44667 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44679:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 44679 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44679:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 44679 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44747:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 44747 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44747:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 44747 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44752:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 44752 | if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_DeleteData__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44752:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 44752 | if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_DeleteData__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44757:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 44757 | if (!_v) goto check_3; return _wrap__OBMolAtomDFSIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44757:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 44757 | if (!_v) goto check_3; return _wrap__OBMolAtomDFSIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44808:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 44808 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44808:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 44808 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44820:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 44820 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44820:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 44820 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolAtomBFSIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44937:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 44937 | if (!_v) goto check_2; return _wrap_new__OBMolAtomBFSIter__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44937:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 44937 | if (!_v) goto check_2; return _wrap_new__OBMolAtomBFSIter__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_SetType__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45163:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 45163 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45163:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 45163 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_SetType__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45175:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 45175 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45175:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 45175 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_SetType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45179:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 45179 | if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45179:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 45179 | if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_GetDistance(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45730:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 45730 | if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_GetDistance__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45730:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 45730 | if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_GetDistance__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_GetAngle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45771:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 45771 | if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45771:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 45771 | if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_MatchesSMARTS(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46383:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 46383 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46383:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 46383 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46452:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 46452 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46452:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 46452 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46465:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 46465 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46465:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 46465 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46477:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 46477 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46477:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 46477 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46545:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 46545 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46545:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 46545 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46550:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 46550 | if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_DeleteData__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46550:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 46550 | if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_DeleteData__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46555:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 46555 | if (!_v) goto check_3; return _wrap__OBMolAtomBFSIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46555:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 46555 | if (!_v) goto check_3; return _wrap__OBMolAtomBFSIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46606:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 46606 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46606:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 46606 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46618:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 46618 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46618:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 46618 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBMolBondBFSIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46735:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 46735 | if (!_v) goto check_2; return _wrap_new_OBMolBondBFSIter__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46735:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 46735 | if (!_v) goto check_2; return _wrap_new_OBMolBondBFSIter__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMolBondBFSIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47489:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 47489 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47489:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 47489 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMolBondBFSIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47502:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 47502 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47502:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 47502 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMolBondBFSIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47514:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 47514 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47514:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 47514 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMolBondBFSIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47582:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 47582 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47582:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 47582 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMolBondBFSIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47591:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 47591 | if (!_v) goto check_3; return _wrap_OBMolBondBFSIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47591:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 47591 | if (!_v) goto check_3; return _wrap_OBMolBondBFSIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMolBondBFSIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47642:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 47642 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47642:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 47642 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMolBondBFSIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47654:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 47654 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47654:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 47654 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolBondIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47761:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 47761 | if (!_v) goto check_2; return _wrap_new__OBMolBondIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47761:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 47761 | if (!_v) goto check_2; return _wrap_new__OBMolBondIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolBondIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48503:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 48503 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48503:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 48503 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolBondIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48516:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 48516 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48516:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 48516 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolBondIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48528:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 48528 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48528:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 48528 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolBondIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48596:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 48596 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48596:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 48596 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolBondIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48605:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 48605 | if (!_v) goto check_3; return _wrap__OBMolBondIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48605:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 48605 | if (!_v) goto check_3; return _wrap__OBMolBondIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolBondIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48655:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 48655 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48655:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 48655 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolBondIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48667:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 48667 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48667:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 48667 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBAtomAtomIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48774:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 48774 | if (!_v) goto check_2; return _wrap_new__OBAtomAtomIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48774:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 48774 | if (!_v) goto check_2; return _wrap_new__OBAtomAtomIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_SetType__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48987:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 48987 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48987:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 48987 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_SetType__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48999:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 48999 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48999:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 48999 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_SetType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:49003:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 49003 | if (!_v) goto check_1; return _wrap__OBAtomAtomIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:49003:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 49003 | if (!_v) goto check_1; return _wrap__OBAtomAtomIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_GetDistance(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:49552:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 49552 | if (!_v) goto check_2; return _wrap__OBAtomAtomIter_GetDistance__SWIG_2(self, argc, argv);} check_2: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:49552:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 49552 | if (!_v) goto check_2; return _wrap__OBAtomAtomIter_GetDistance__SWIG_2(self, argc, argv);} check_2: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_GetAngle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:49591:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 49591 | if (!_v) goto check_1; return _wrap__OBAtomAtomIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:49591:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 49591 | if (!_v) goto check_1; return _wrap__OBAtomAtomIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_MatchesSMARTS(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50199:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 50199 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50199:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 50199 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50268:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 50268 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50268:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 50268 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50281:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 50281 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50281:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 50281 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50293:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 50293 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50293:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 50293 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50361:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 50361 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50361:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 50361 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50370:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 50370 | if (!_v) goto check_3; return _wrap__OBAtomAtomIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50370:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 50370 | if (!_v) goto check_3; return _wrap__OBAtomAtomIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50420:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 50420 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50420:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 50420 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50432:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 50432 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50432:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 50432 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBAtomBondIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50539:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 50539 | if (!_v) goto check_2; return _wrap_new__OBAtomBondIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50539:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 50539 | if (!_v) goto check_2; return _wrap_new__OBAtomBondIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomBondIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51281:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 51281 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51281:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 51281 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomBondIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51294:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 51294 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51294:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 51294 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomBondIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51306:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 51306 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51306:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 51306 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomBondIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51374:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 51374 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51374:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 51374 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomBondIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51383:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 51383 | if (!_v) goto check_3; return _wrap__OBAtomBondIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51383:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 51383 | if (!_v) goto check_3; return _wrap__OBAtomBondIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomBondIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51433:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 51433 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51433:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 51433 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomBondIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51445:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 51445 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51445:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 51445 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBResidueIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51552:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 51552 | if (!_v) goto check_2; return _wrap_new__OBResidueIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51552:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 51552 | if (!_v) goto check_2; return _wrap_new__OBResidueIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_SetName(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51663:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 51663 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51663:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 51663 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_SetAtomID(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51749:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 51749 | if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51749:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 51749 | if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52081:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 52081 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52081:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 52081 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52094:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 52094 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52094:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 52094 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52106:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 52106 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52106:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 52106 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52174:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 52174 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52174:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 52174 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52183:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 52183 | if (!_v) goto check_3; return _wrap__OBResidueIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52183:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 52183 | if (!_v) goto check_3; return _wrap__OBResidueIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52233:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 52233 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52233:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 52233 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52245:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 52245 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52245:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 52245 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBResidueAtomIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52352:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 52352 | if (!_v) goto check_2; return _wrap_new__OBResidueAtomIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52352:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 52352 | if (!_v) goto check_2; return _wrap_new__OBResidueAtomIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_SetType__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52569:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 52569 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52569:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 52569 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_SetType__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52581:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 52581 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52581:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 52581 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_SetType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52585:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 52585 | if (!_v) goto check_1; return _wrap__OBResidueAtomIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52585:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 52585 | if (!_v) goto check_1; return _wrap__OBResidueAtomIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_GetDistance(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53138:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 53138 | if (!_v) goto check_1; return _wrap__OBResidueAtomIter_GetDistance__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53138:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 53138 | if (!_v) goto check_1; return _wrap__OBResidueAtomIter_GetDistance__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_GetAngle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53179:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 53179 | if (!_v) goto check_1; return _wrap__OBResidueAtomIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53179:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 53179 | if (!_v) goto check_1; return _wrap__OBResidueAtomIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_MatchesSMARTS(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53792:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 53792 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53792:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 53792 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53861:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 53861 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53861:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 53861 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53874:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 53874 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53874:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 53874 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53886:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 53886 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53886:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 53886 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53954:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 53954 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53954:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 53954 | if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53959:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 53959 | if (!_v) goto check_1; return _wrap__OBResidueAtomIter_DeleteData__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53959:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 53959 | if (!_v) goto check_1; return _wrap__OBResidueAtomIter_DeleteData__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53964:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 53964 | if (!_v) goto check_3; return _wrap__OBResidueAtomIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53964:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 53964 | if (!_v) goto check_3; return _wrap__OBResidueAtomIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54015:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 54015 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54015:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 54015 | if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54027:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 54027 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54027:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 54027 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolAngleIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54134:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 54134 | if (!_v) goto check_2; return _wrap_new__OBMolAngleIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54134:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 54134 | if (!_v) goto check_2; return _wrap_new__OBMolAngleIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolTorsionIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54213:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 54213 | if (!_v) goto check_2; return _wrap_new__OBMolTorsionIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54213:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 54213 | if (!_v) goto check_2; return _wrap_new__OBMolTorsionIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolPairIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54294:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 54294 | if (!_v) goto check_2; return _wrap_new__OBMolPairIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54294:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 54294 | if (!_v) goto check_2; return _wrap_new__OBMolPairIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolRingIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54373:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 54373 | if (!_v) goto check_2; return _wrap_new__OBMolRingIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54373:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 54373 | if (!_v) goto check_2; return _wrap_new__OBMolRingIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolRingIter_SetType__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54531:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 54531 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54531:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 54531 | if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolRingIter_SetType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54547:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 54547 | if (!_v) goto check_1; return _wrap__OBMolRingIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54547:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 54547 | if (!_v) goto check_1; return _wrap__OBMolRingIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = std::vector]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont >; Seq = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = std::vector; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = std::vector; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:8551:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class std::vector' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 4181 | memset(v_def,0,sizeof(Type)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/oberror.h:28, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/matrix3x3.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3403: /usr/include/c++/10/bits/stl_vector.h:389:11: note: 'class std::vector' declared here 389 | class vector : protected _Vector_base<_Tp, _Alloc> | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = OpenBabel::vector3; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = OpenBabel::vector3; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = OpenBabel::vector3]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = OpenBabel::vector3; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = OpenBabel::vector3; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:9883:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class OpenBabel::vector3' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 4181 | memset(v_def,0,sizeof(Type)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3402: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/vector3.h:45:15: note: 'class OpenBabel::vector3' declared here 45 | class OBAPI vector3 | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = std::vector]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont >; Seq = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = std::vector; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = std::vector; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10229:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class std::vector' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 4181 | memset(v_def,0,sizeof(Type)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/oberror.h:28, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/matrix3x3.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3403: /usr/include/c++/10/bits/stl_vector.h:389:11: note: 'class std::vector' declared here 389 | class vector : protected _Vector_base<_Tp, _Alloc> | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = OpenBabel::OBMol; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = OpenBabel::OBMol; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = OpenBabel::OBMol]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = OpenBabel::OBMol; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = OpenBabel::OBMol; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10587:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class OpenBabel::OBMol' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 4181 | memset(v_def,0,sizeof(Type)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3411: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:113:14: note: 'class OpenBabel::OBMol' declared here 113 | class OBAPI OBMol: public OBBase | ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = OpenBabel::OBBond; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = OpenBabel::OBBond; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = OpenBabel::OBBond]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = OpenBabel::OBBond; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = OpenBabel::OBBond; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10926:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class OpenBabel::OBBond' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 4181 | memset(v_def,0,sizeof(Type)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:43, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3411: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/bond.h:69:15: note: 'class OpenBabel::OBBond' declared here 69 | class OBAPI OBBond: public OBBase | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = OpenBabel::OBResidue; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = OpenBabel::OBResidue; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = OpenBabel::OBResidue]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = OpenBabel::OBResidue; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = OpenBabel::OBResidue; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:11265:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class OpenBabel::OBResidue' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 4181 | memset(v_def,0,sizeof(Type)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/atom.h:34, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:42, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3411: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/residue.h:50:14: note: 'class OpenBabel::OBResidue' declared here 50 | class OBAPI OBResidue : public OBBase | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = OpenBabel::OBRing; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = OpenBabel::OBRing; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = OpenBabel::OBRing]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = OpenBabel::OBRing; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = OpenBabel::OBRing; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:11607:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class OpenBabel::OBRing' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 4181 | memset(v_def,0,sizeof(Type)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:50, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3411: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/ring.h:39:15: note: 'class OpenBabel::OBRing' declared here 39 | class OBAPI OBRing | ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = std::pair; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = std::pair; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = std::pair]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont >; Seq = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = std::pair; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = std::pair; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13094:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct std::pair' with no trivial copy-assignment; use assignment instead [-Wclass-memaccess] 4181 | memset(v_def,0,sizeof(Type)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3322: /usr/include/c++/10/bits/stl_pair.h:211:12: note: 'struct std::pair' declared here 211 | struct pair | ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = std::vector >; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont > >; Seq = std::vector > >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector > >; T = std::vector >; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector > >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector > >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13461:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class std::vector >' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 4181 | memset(v_def,0,sizeof(Type)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/oberror.h:28, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/matrix3x3.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3403: /usr/include/c++/10/bits/stl_vector.h:389:11: note: 'class std::vector >' declared here 389 | class vector : protected _Vector_base<_Tp, _Alloc> | ^~~~~~ In file included from /usr/include/string.h:532, from /usr/include/python3.9/Python.h:30, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:177: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void SWIG_Python_addvarlink(PyObject*, char*, PyObject* (*)(), int (*)(PyObject*))' at /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:61098:16: /usr/include/bits/string_fortified.h:91:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'void SWIG_Python_addvarlink(PyObject*, char*, PyObject* (*)(), int (*)(PyObject*))': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:61095:27: note: length computed here 61095 | size_t size = strlen(name)+1; | ~~~~~~^~~~~~ In file included from /usr/include/string.h:532, from /usr/include/python3.9/Python.h:30, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:177: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void SWIG_Python_FixMethods(PyMethodDef*, swig_const_info*, swig_type_info**, swig_type_info**)' at /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:61179:22, inlined from 'PyObject* PyInit__openbabel()' at /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:61279:25: /usr/include/bits/string_fortified.h:91:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [100%] Linking CXX shared module ../lib64/_openbabel.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/scripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/bindings_python.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/include/eigen3 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/_openbabel.so "CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o" -lpython3.9 ../lib64/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [100%] Built target bindings_python make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' /usr/bin/cmake -E cmake_progress_start /usr/src/RPM/BUILD/openbabel-2.4.1/CMakeFiles 0 make: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.11356 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/openbabel-buildroot + : + /bin/rm -rf -- /usr/src/tmp/openbabel-buildroot + PATH=/usr/libexec/rpm-build:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games + cd openbabel-2.4.1 + make 'INSTALL=/usr/libexec/rpm-build/install -p' install DESTDIR=/usr/src/tmp/openbabel-buildroot make: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target openbabel make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 14%] Built 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'/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target plugin_charges make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 23%] Built target plugin_charges make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target inchi make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 31%] Built target inchi make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target smilesformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Built target smilesformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target mdlformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 33%] Built target mdlformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target 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opendxformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target outformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 68%] Built target outformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target pcmodelformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 69%] Built target pcmodelformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target pdbqtformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 70%] Built target pdbqtformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target pointcloudformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 71%] Built target pointcloudformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' 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Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target xedformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 72%] Built target xedformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target xyzformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Built target xyzformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target yasaraformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Built target yasaraformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target rxnformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 74%] Built target rxnformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target chemdrawcdx make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 75%] Built target chemdrawcdx make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target chemkinformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 75%] Built target chemkinformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target rsmiformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 75%] Built target rsmiformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target png2format make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 76%] Built target png2format make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target cdxmlformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 76%] Built target cdxmlformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target cmlformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 77%] Built target cmlformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target pubchem make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 77%] Built target pubchem make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target xmlformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 78%] Built target xmlformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target cmlreactformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 78%] Built target cmlreactformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target chemdoodlejsonformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 79%] Built target chemdoodlejsonformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target pubchemjsonformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 80%] Built target pubchemjsonformat make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target babel make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 80%] Built target babel make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obabel make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 80%] Built target obabel make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obchiral make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 80%] Built target obchiral make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obconformer make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 81%] Built target obconformer make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obenergy make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 82%] Built target obenergy make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obfit make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 82%] Built target obfit make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obgen make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 82%] Built target obgen make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obminimize make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Built target obminimize make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obprobe make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Built target obprobe make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obprop make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Built target obprop make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obrotamer make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Built target obrotamer make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obrotate make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 85%] Built target obrotate make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obsym make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 86%] Built target obsym make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obtautomer make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 86%] Built target obtautomer make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obthermo make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 86%] Built target obthermo make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obdistgen make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 86%] Built target obdistgen make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obrms make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 86%] Built target obrms make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obspectrophore make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 86%] Built target obspectrophore make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obgrep make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Built target obgrep make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target obgui make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Built target obgui make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target test_runner make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 99%] Built target test_runner make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target test_inchiwrite make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 99%] Built target test_inchiwrite make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target roundtrip make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [100%] Built target roundtrip make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Consolidate compiler generated dependencies of target bindings_python make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [100%] Built target bindings_python make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' Install the project... -- Install configuration: "RelWithDebInfo" -- Installing: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/babelconfig.h -- Installing: /usr/src/tmp/openbabel-buildroot/usr/lib64/pkgconfig/openbabel-2.0.pc -- Installing: /usr/src/tmp/openbabel-buildroot/usr/lib64/cmake/openbabel2/OpenBabel2_EXPORTS.cmake -- Installing: /usr/src/tmp/openbabel-buildroot/usr/lib64/cmake/openbabel2/OpenBabel2_EXPORTS-relwithdebinfo.cmake -- Installing: /usr/src/tmp/openbabel-buildroot/usr/lib64/cmake/openbabel2/OpenBabel2Config.cmake -- Installing: /usr/src/tmp/openbabel-buildroot/usr/lib64/cmake/openbabel2/OpenBabel2ConfigVersion.cmake -- Installing: /usr/src/tmp/openbabel-buildroot/usr/include/inchi/inchi_api.h -- Installing: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/chemdrawcdx.h -- Installing: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/alias.h -- Installing: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/atom.h -- Installing: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/atomclass.h -- Up-to-date: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/babelconfig.h -- Installing: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/base.h -- Installing: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/bitvec.h -- Installing: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/bond.h -- Installing: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/bondtyper.h -- Installing: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/builder.h -- Installing: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/canon.h -- Installing: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/chains.h -- Installing: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/chargemodel.h -- Installing: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/chiral.h -- Installing: 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changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/siestaformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/qchemformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/pwscfformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/nwchemformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/mopacformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/molproformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/jaguarformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/hinformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/gulpformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/gausszmatformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/gausscubeformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/gaussformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/gamessformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/fhiaimsformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/fchkformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/dmolformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/daltonformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/crystal09format.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/castepformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/aoforceformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/adfformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/abinitformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/acesformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/pngformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/confabreport.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/titleformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/textformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/svgformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/reportformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/povrayformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/painterformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/nulformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/molreport.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/MNAformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/copyformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/asciiformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/inchiformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/pdbformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/mol2format.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/mdlformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/smilesformat.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/plugin_charges.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/plugin_ops.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/plugin_forcefields.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/plugin_fingerprints.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/openbabel/2.4.1/plugin_descriptors.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/libopenbabel.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) Verifying and fixing files in /usr/src/tmp/openbabel-buildroot (binconfig,pkgconfig,libtool,desktop,gnuconfig) Checking contents of files in /usr/src/tmp/openbabel-buildroot/ (default) Compressing files in /usr/src/tmp/openbabel-buildroot (auto) removed '/usr/src/tmp/openbabel-buildroot/usr/share/man/man1/obabel.1' '/usr/src/tmp/openbabel-buildroot/usr/share/man/man1/obabel.1.xz' -> 'babel.1.xz' removed '/usr/src/tmp/openbabel-buildroot/usr/share/man/man1/obabel.1.xz' '/usr/src/tmp/openbabel-buildroot/usr/share/man/man1/obabel.1.xz' -> 'babel.1.xz' Adjusting library links in /usr/src/tmp/openbabel-buildroot ./usr/lib64: (from :0) libopenbabel.so.5 -> libopenbabel.so.5.0.0 libinchi.so.0 -> libinchi.so.0.4.1 Verifying ELF objects in /usr/src/tmp/openbabel-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) Bytecompiling python3 modules in /usr/src/tmp/openbabel-buildroot using /usr/bin/python3 compile /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/openbabel.py compile /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py Can't list '/usr/src/tmp/openbabel-buildroot/usr/lib/python3/site-packages' Bytecompiling python3 modules with optimization in /usr/src/tmp/openbabel-buildroot using /usr/bin/python3 -O compile /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/openbabel.py compile /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py Can't list '/usr/src/tmp/openbabel-buildroot/usr/lib/python3/site-packages' Bytecompiling python3 modules with optimization-2 in /usr/src/tmp/openbabel-buildroot using /usr/bin/python3 -OO compile /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/openbabel.py compile /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py Can't list '/usr/src/tmp/openbabel-buildroot/usr/lib/python3/site-packages' Hardlinking identical .pyc and .opt-?.pyc files './usr/lib64/python3/site-packages/__pycache__/openbabel.cpython-39.opt-1.pyc' => './usr/lib64/python3/site-packages/__pycache__/openbabel.cpython-39.pyc' './usr/lib64/python3/site-packages/__pycache__/pybel.cpython-39.opt-1.pyc' => './usr/lib64/python3/site-packages/__pycache__/pybel.cpython-39.pyc' Processing files: openbabel-2.4.1-alt7 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.64226 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd openbabel-2.4.1 + DOCDIR=/usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + export DOCDIR + rm -rf /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + /bin/mkdir -p /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + cp -prL AUTHORS README.md THANKS /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + chmod -R go-w /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + chmod -R a+rX /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + cp -prL doc/FAQ.html doc/README.dioxin.pov doc/README.povray doc/dioxin.inc doc/dioxin.mol2 doc/dioxin.png doc/dioxin.pov /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + chmod -R go-w /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + chmod -R a+rX /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.3B4Ew2 find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,python3,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.VXTUb5 find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) Requires: /lib64/ld-linux-x86-64.so.2, libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libc.so.6(GLIBC_2.7)(64bit), libgcc_s.so.1(GCC_3.0)(64bit), libm.so.6(GLIBC_2.2.5)(64bit), libopenbabel.so.5()(64bit) >= set:phCFsjQ03bL7oLWaS4XGyfOouqRZ5wJ1ijtZAY4jntEgMrGMxeFKm6Q9Z81mr0lKBYr0KXy0XJoPLCoo3y1FhXxc0SBYcqsHhM0PSZf0lM9roWyBEZwmEIyf3cl9V1sJxJVxLdbD8X1Yi7EZH2wx4INp0kuS6SYZKmo5FCCsOVriM4YOYdzZ94V5Yok54Qea3KQiEHj2GeO2F594cfw11U5s02Ra9ZbMlIhHyI0htE3fqR8NzhsiE7nhuSqzBs7wZkSQBYLb0wZfqox3F0Hcd0cEGkECFs0FTJpAdWRveYAyVkKGIKWmASZBoAqO5miMv8fvIZyY9Z19SBcsRadcEOZFagwkBdyvW21Ziu3Zr7xQJ2, libstdc++.so.6(CXXABI_1.3)(64bit), libstdc++.so.6(CXXABI_1.3.8)(64bit), libstdc++.so.6(CXXABI_1.3.9)(64bit), libstdc++.so.6(GLIBCXX_3.4)(64bit), libstdc++.so.6(GLIBCXX_3.4.11)(64bit), libstdc++.so.6(GLIBCXX_3.4.15)(64bit), libstdc++.so.6(GLIBCXX_3.4.20)(64bit), libstdc++.so.6(GLIBCXX_3.4.21)(64bit), libstdc++.so.6(GLIBCXX_3.4.9)(64bit), libwx_baseu-2.8.so.0()(64bit) >= set:pi4nLt9ZasXNouIGrHjR1uh7KYwXZkS5hGXpZ4fKiOypSHHv4ZwObCN571JgRZB5EDhithXfem5UIS83iWuvLyXj59P7t7sKq2qbOilds5eRh1k0GKww2dhCPspO3xQSFZLZuMqtZqpr2FwHComZeWJcXpR38kt127FshokbWfPbjMjWoA1Mj6BiNS9ZgZyYBhxtBg126NNf3pGmKErZDjLUmGk4E6VnzZkAAT8FmbTPnUqStCjGn5mXC1XUp6nF0vZqf9S76HRGTyUDRvznzBlZg7EXDhTr3TZ4VR9lShkVNke8H97PbDuVtoOqlXB7IaYGKs1PqeUE6wJZ31, libwx_baseu-2.8.so.0(WXU_2.8)(64bit), libwx_gtk2u_adv-2.8.so.0()(64bit) >= set:on2Dt0, libwx_gtk2u_adv-2.8.so.0(WXU_2.8)(64bit), libwx_gtk2u_core-2.8.so.0()(64bit) >= set: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, libwx_gtk2u_core-2.8.so.0(WXU_2.8)(64bit), libwx_gtk2u_core-2.8.so.0(WXU_2.8.5)(64bit), rtld(GNU_HASH), rtld(GNU_UNIQUE) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Xfc711 Creating openbabel-debuginfo package Processing files: libopenbabel-2.4.1-alt7 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.zDid62 find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,python3,shell,typelib) lib.prov: /usr/src/tmp/openbabel-buildroot/usr/lib64/libinchi.so.0: 901 symbols, 20 bpp warning: hash collision: RemoveLastGroupFromBnStruct x_close_line lib.prov: /usr/src/tmp/openbabel-buildroot/usr/lib64/libopenbabel.so.5: 3046 symbols, 22 bpp warning: hash collision: _ZN9OpenBabel5OBMol8IsChiralEv _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPPN9OpenBabel6OBRingESt6vectorIS4_SaIS4_EEEElS4_NS0_5__ops15_Iter_comp_iterIPFbPKS3_SD_EEEEvT_T0_SI_T1_T2_ warning: hash collision: _ZN9OpenBabel14setUpDownBondsEiiRNS_15TSimpleMoleculeERSt6vectorIiSaIiEES5_S5_ _ZNSt6vectorIPN9OpenBabel11TSingleAtomESaIS2_EE17_M_default_appendEm Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.A3BdF0 find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) Provides: libinchi.so.0()(64bit) = set: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, libopenbabel.so.5()(64bit) = set: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 Requires: libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libc.so.6(GLIBC_2.7)(64bit), libcairo.so.2()(64bit) >= set:mhZ4b5NOIyQ8NQ17Dc0feE777Zjk0473rgDULVHEZmWwI1f0wjkZuwnrUfBk90v8XZc0, libdl.so.2(GLIBC_2.2.5)(64bit), libgcc_s.so.1(GCC_3.0)(64bit), libgcc_s.so.1(GCC_3.4)(64bit), libm.so.6(GLIBC_2.2.5)(64bit), libm.so.6(GLIBC_2.29)(64bit), libstdc++.so.6(CXXABI_1.3)(64bit), libstdc++.so.6(CXXABI_1.3.8)(64bit), libstdc++.so.6(CXXABI_1.3.9)(64bit), libstdc++.so.6(GLIBCXX_3.4)(64bit), libstdc++.so.6(GLIBCXX_3.4.11)(64bit), libstdc++.so.6(GLIBCXX_3.4.15)(64bit), libstdc++.so.6(GLIBCXX_3.4.20)(64bit), libstdc++.so.6(GLIBCXX_3.4.21)(64bit), libstdc++.so.6(GLIBCXX_3.4.26)(64bit), libstdc++.so.6(GLIBCXX_3.4.5)(64bit), libstdc++.so.6(GLIBCXX_3.4.9)(64bit), libxml2.so.2()(64bit) >= set:oifKYClhgDOqsHvQHTqghpZjZhYHWvoUeQ1SsoPjAmxIBQqtrxV4Ci1ZmZ5pFWRwsE7VJfSzWZpquEjesOiuXp1iKnNCwPSRxzODZGTR2, libxml2.so.2(LIBXML2_2.4.30)(64bit), libxml2.so.2(LIBXML2_2.5.0)(64bit), libxml2.so.2(LIBXML2_2.6.0)(64bit), libxml2.so.2(LIBXML2_2.6.5)(64bit), libz.so.1()(64bit) >= set:kgb6dgbWdAhpAO8J790ZdMxZd4, rtld(GNU_HASH), rtld(GNU_UNIQUE) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.bIGfX2 Creating libopenbabel-debuginfo package Processing files: libopenbabel-devel-2.4.1-alt7 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.nDrhv2 find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,python3,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.iqwqZ2 find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/op.h:23:10: fatal error: string: No such file or directory 23 | #include | ^~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/op.h: cpp failed, trying c++ mode /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/xml.h:25:10: fatal error: libxml/xmlreader.h: No such file or directory 25 | #include | ^~~~~~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/xml.h: cpp failed /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/inchiformat.h:25:10: fatal error: inchi_api.h: No such file or directory 25 | #include "inchi_api.h" | ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/inchiformat.h: cpp failed /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/math/align.h:26:10: fatal error: Eigen/Core: No such file or directory 26 | #include | ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/math/align.h: cpp failed Provides: pkgconfig(openbabel-2.0) = 2.4.1 Requires: libopenbabel = 2.4.1-alt7, /usr/lib64/libinchi.so.0, /usr/lib64/libopenbabel.so.5, /usr/lib64/pkgconfig Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.xCqEN2 Processing files: python3-module-openbabel-2.4.1-alt7 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.4QXsV2 find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,python3,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.O15IR0 find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/openbabel.py: Ignore for REQ=slight module=DLFCN /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/openbabel.py: Ignore for REQ=slight module=__builtin__ /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/openbabel.py: _openbabel is possibly a self-providing dependency, skip it python3.req: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/openbabel.py: skipping builtins /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/openbabel.py: Ignore for REQ=slight module=dl /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/openbabel.py: Ignore for REQ=slight module=imp /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/openbabel.py: Ignore for REQ=slight module=importlib /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/openbabel.py: Ignore for REQ=slight module=new /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/openbabel.py: Ignore for REQ=slight module=os.path python3.req: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/openbabel.py: skipping sys /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/openbabel.py: _openbabel is possibly a self-providing dependency, skip it /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py: Ignore for REQ=slight module=Image /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py: Ignore for REQ=slight module=ImageTk /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py: Ignore for REQ=slight module=OpenBabel /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py: Ignore for REQ=slight module=System /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py: Ignore for REQ=slight module=System.Drawing /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py: Ignore for REQ=slight module=System.Windows.Forms /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py: Ignore for REQ=slight module=Tkinter /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py: Ignore for REQ=slight module=clr /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py: Ignore for REQ=slight module=doctest /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py: Ignore for REQ=slight module=imolecule /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py: Ignore for REQ=slight module=java.lang.System /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py: Ignore for REQ=slight module=javax /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py: openbabel is possibly a self-providing dependency, skip it /usr/lib/rpm/python3.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py: Ignore for REQ=slight module=org.openbabel python3.req: /usr/src/tmp/openbabel-buildroot/usr/lib64/python3/site-packages/pybel.py: skipping sys Provides: python3(_openbabel), python3(openbabel), python3(pybel) Requires: libopenbabel = 2.4.1-alt7, /usr/lib64/python3/site-packages, libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libgcc_s.so.1(GCC_3.0)(64bit), libgcc_s.so.1(GCC_3.4)(64bit), libm.so.6(GLIBC_2.2.5)(64bit), libopenbabel.so.5()(64bit) >= set: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, libpython3.9.so.1.0()(64bit) >= set:oh6O6j4tVnIamdaOBPpXadZy5bkiswy3b9nGJN2foZ2jWbFtnLLQavyXsm8axRDeFTQFIG1zyDvt64a2ZlHpCB6YzYPZwdCdAd3u718H1pDrOIza20Z3b5sy3ni84EI70hRvZcsoweHgwIO1AePDMxpeU6T9Fwh2AQhN16Fi9znZmiTnTyR4ZzySd9Rz11x6m9387j5PoYwk7BAt1nOu3z6, libstdc++.so.6(CXXABI_1.3)(64bit), libstdc++.so.6(CXXABI_1.3.8)(64bit), libstdc++.so.6(CXXABI_1.3.9)(64bit), libstdc++.so.6(GLIBCXX_3.4)(64bit), libstdc++.so.6(GLIBCXX_3.4.11)(64bit), libstdc++.so.6(GLIBCXX_3.4.15)(64bit), libstdc++.so.6(GLIBCXX_3.4.20)(64bit), libstdc++.so.6(GLIBCXX_3.4.21)(64bit), libstdc++.so.6(GLIBCXX_3.4.9)(64bit), python3(json) < 0, python3(os.path) < 0, python3(tempfile) < 0, python3(uuid) < 0, python3(xml.etree.ElementTree) < 0, python3.9-ABI(64bit), rtld(GNU_HASH), rtld(GNU_UNIQUE) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.h11eG4 Creating python3-module-openbabel-debuginfo package Processing files: openbabel-debuginfo-2.4.1-alt7 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.GuC0l3 find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.ZXT9d2 find-requires: running scripts (debuginfo) Requires: openbabel = 2.4.1-alt7, /usr/lib/debug/lib64/ld-linux-x86-64.so.2.debug, debug64(libc.so.6), debug64(libgcc_s.so.1), debug64(libm.so.6), debug64(libopenbabel.so.5), debug64(libstdc++.so.6), debug64(libwx_baseu-2.8.so.0), debug64(libwx_gtk2u_adv-2.8.so.0), debug64(libwx_gtk2u_core-2.8.so.0) Processing files: libopenbabel-debuginfo-2.4.1-alt7 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.zpb7m1 find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.zJtNd2 find-requires: running scripts (debuginfo) Provides: debug64(libinchi.so.0), debug64(libopenbabel.so.5) Requires: libopenbabel = 2.4.1-alt7, debug64(libc.so.6), debug64(libcairo.so.2), debug64(libdl.so.2), debug64(libgcc_s.so.1), debug64(libm.so.6), debug64(libstdc++.so.6), debug64(libxml2.so.2), debug64(libz.so.1) Processing files: python3-module-openbabel-debuginfo-2.4.1-alt7 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.aQaDG1 find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Jq0EX0 find-requires: running scripts (debuginfo) Requires: python3-module-openbabel = 2.4.1-alt7, debug64(libc.so.6), debug64(libgcc_s.so.1), debug64(libm.so.6), debug64(libopenbabel.so.5), debug64(libpython3.9.so.1.0), debug64(libstdc++.so.6) Adding to openbabel-debuginfo a strict dependency on openbabel Adding to libopenbabel-devel a strict dependency on libopenbabel Adding to python3-module-openbabel a strict dependency on libopenbabel Adding to libopenbabel-debuginfo a strict dependency on libopenbabel Adding to python3-module-openbabel-debuginfo a strict dependency on python3-module-openbabel Adding to openbabel a strict dependency on libopenbabel Adding to openbabel-debuginfo a strict dependency on libopenbabel-debuginfo Adding to python3-module-openbabel-debuginfo a strict dependency on libopenbabel-debuginfo Removing from openbabel-debuginfo 33 sources provided by libopenbabel-debuginfo also prunning dir /usr/src/debug/openbabel-2.4.1/include/openbabel/math also prunning dir /usr/src/debug/openbabel-2.4.1/include/openbabel/stereo also prunning dir /usr/src/debug/openbabel-2.4.1/include/openbabel also prunning dir /usr/src/debug/openbabel-2.4.1/include Removing from python3-module-openbabel-debuginfo 54 sources provided by libopenbabel-debuginfo also prunning dir /usr/src/debug/openbabel-2.4.1/include/openbabel/math Removing 1 extra deps from openbabel due to dependency on libopenbabel Removing 2 extra deps from libopenbabel-devel due to dependency on libopenbabel Removing 1 extra deps from python3-module-openbabel due to dependency on libopenbabel Removing 1 extra deps from openbabel-debuginfo due to dependency on libopenbabel-debuginfo Removing 1 extra deps from python3-module-openbabel-debuginfo due to dependency on libopenbabel-debuginfo Removing 19 extra deps from openbabel due to repentancy on libopenbabel Removing 19 extra deps from python3-module-openbabel due to repentancy on libopenbabel Removing 4 extra deps from openbabel-debuginfo due to repentancy on libopenbabel-debuginfo Removing 4 extra deps from python3-module-openbabel-debuginfo due to repentancy on libopenbabel-debuginfo Wrote: /usr/src/RPM/RPMS/x86_64/openbabel-2.4.1-alt7.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/libopenbabel-2.4.1-alt7.x86_64.rpm (w2T16.xzdio) Wrote: /usr/src/RPM/RPMS/x86_64/libopenbabel-devel-2.4.1-alt7.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/python3-module-openbabel-2.4.1-alt7.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/openbabel-debuginfo-2.4.1-alt7.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/libopenbabel-debuginfo-2.4.1-alt7.x86_64.rpm (w2T16.xzdio) Wrote: /usr/src/RPM/RPMS/x86_64/python3-module-openbabel-debuginfo-2.4.1-alt7.x86_64.rpm (w2T16.xzdio) 933.18user 210.92system 3:56.98elapsed 482%CPU (0avgtext+0avgdata 1337104maxresident)k 0inputs+0outputs (0major+33598654minor)pagefaults 0swaps /.out/openbabel-2.4.1-alt7.x86_64.rpm: The use of such a license name is ambiguous: GPL /.out/libopenbabel-2.4.1-alt7.x86_64.rpm: The use of such a license name is ambiguous: GPL /.out/libopenbabel-devel-2.4.1-alt7.x86_64.rpm: The use of such a license name is ambiguous: GPL /.out/python3-module-openbabel-2.4.1-alt7.x86_64.rpm: The use of such a license name is ambiguous: GPL /.out/openbabel-debuginfo-2.4.1-alt7.x86_64.rpm: The use of such a license name is ambiguous: GPL /.out/libopenbabel-debuginfo-2.4.1-alt7.x86_64.rpm: The use of such a license name is ambiguous: GPL /.out/python3-module-openbabel-debuginfo-2.4.1-alt7.x86_64.rpm: The use of such a license name is ambiguous: GPL 3.96user 3.47system 4:19.22elapsed 2%CPU (0avgtext+0avgdata 130212maxresident)k 0inputs+0outputs (0major+268712minor)pagefaults 0swaps --- libopenbabel-2.4.1-alt7.x86_64.rpm.repo 2021-07-05 02:24:16.000000000 +0000 +++ libopenbabel-2.4.1-alt7.x86_64.rpm.hasher 2024-04-21 03:00:57.217000193 +0000 @@ -166,130 +166,130 @@ File: /usr/lib64/libinchi.so.0 120777 root:root libinchi.so.0.4.1 -File: /usr/lib64/libinchi.so.0.4.1 100644 root:root 7510b1ff287f16d845a9e2aae80f79b5 +File: /usr/lib64/libinchi.so.0.4.1 100644 root:root 59a43448a0e1d4ff4a7484bda8f5e874 File: /usr/lib64/libopenbabel.so.5 120777 root:root libopenbabel.so.5.0.0 -File: /usr/lib64/libopenbabel.so.5.0.0 100644 root:root b3881ec255b43ed885e5f123e468cee4 +File: /usr/lib64/libopenbabel.so.5.0.0 100644 root:root e46ed106e54a7d9d18f0e29256e42a17 File: /usr/lib64/openbabel 40755 root:root File: /usr/lib64/openbabel/2.4.1 40755 root:root -File: /usr/lib64/openbabel/2.4.1/APIInterface.so 100644 root:root 035c2ba64b572013e5bc905b3b37999e -File: /usr/lib64/openbabel/2.4.1/CSRformat.so 100644 root:root 73870f3303b9a5a0e1df1aa740c7dd37 -File: /usr/lib64/openbabel/2.4.1/MCDLformat.so 100644 root:root 48e807d04a193611edecc247f8c9a273 -File: /usr/lib64/openbabel/2.4.1/MNAformat.so 100644 root:root 3cb1db43d66df396c3ed6a9890601314 -File: /usr/lib64/openbabel/2.4.1/PQSformat.so 100644 root:root 98b57e42ddcbef6063d57dbc111c921c -File: /usr/lib64/openbabel/2.4.1/abinitformat.so 100644 root:root 73cc3b933392088d772c0fa4a8a4bc11 -File: /usr/lib64/openbabel/2.4.1/acesformat.so 100644 root:root 0a5dc448e806b7a38c755a3d55781053 -File: /usr/lib64/openbabel/2.4.1/acrformat.so 100644 root:root fde2032d47953edc314e055d1a46c051 -File: /usr/lib64/openbabel/2.4.1/adfformat.so 100644 root:root 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