<86>Oct 18 15:36:18 userdel[3346893]: delete user 'rooter' <86>Oct 18 15:36:18 userdel[3346893]: removed group 'rooter' owned by 'rooter' <86>Oct 18 15:36:18 userdel[3346893]: removed shadow group 'rooter' owned by 'rooter' <86>Oct 18 15:36:18 groupadd[3346950]: group added to /etc/group: name=rooter, GID=1850 <86>Oct 18 15:36:18 groupadd[3346950]: group added to /etc/gshadow: name=rooter <86>Oct 18 15:36:18 groupadd[3346950]: new group: name=rooter, GID=1850 <86>Oct 18 15:36:18 useradd[3346992]: new user: name=rooter, UID=1850, GID=1850, home=/root, shell=/bin/bash, from=none <86>Oct 18 15:36:18 userdel[3347052]: delete user 'builder' <86>Oct 18 15:36:18 userdel[3347052]: removed group 'builder' owned by 'builder' <86>Oct 18 15:36:18 userdel[3347052]: removed shadow group 'builder' owned by 'builder' <86>Oct 18 15:36:18 groupadd[3347117]: group added to /etc/group: name=builder, GID=1851 <86>Oct 18 15:36:18 groupadd[3347117]: group added to /etc/gshadow: name=builder <86>Oct 18 15:36:18 groupadd[3347117]: new group: name=builder, GID=1851 <86>Oct 18 15:36:18 useradd[3347173]: new user: name=builder, UID=1851, GID=1851, home=/usr/src, shell=/bin/bash, from=none <13>Oct 18 15:36:21 rpmi: libpcre16-8.45-alt2 sisyphus+283722.100.1.2 1629848198 installed <13>Oct 18 15:36:21 rpmi: libpcre3-8.45-alt2 sisyphus+283722.100.1.2 1629848198 installed <13>Oct 18 15:36:21 rpmi: libreadline7-7.0.3-alt5 sisyphus+328858.200.1.1 1694010737 installed <13>Oct 18 15:36:21 rpmi: pcretest-8.45-alt2 sisyphus+283722.100.1.2 1629848198 installed <13>Oct 18 15:36:21 rpmi: libpcre-devel-8.45-alt2 sisyphus+283722.100.1.2 1629848198 installed <13>Oct 18 15:36:21 rpmi: zlib-devel-1.3.1-alt1 sisyphus+342532.100.1.1 1710232285 installed Building target platforms: x86_64 Building for target x86_64 Wrote: /usr/src/in/nosrpm/fastq-tools-0.8.3-alt1.nosrc.rpm (w1.gzdio) Installing fastq-tools-0.8.3-alt1.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.6245 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf fastq-tools-0.8.3 + echo 'Source #0 (fastq-tools-0.8.3.tar):' Source #0 (fastq-tools-0.8.3.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/fastq-tools-0.8.3.tar + cd fastq-tools-0.8.3 + /bin/chmod -c -Rf u+rwX,go-w . + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.6245 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd fastq-tools-0.8.3 + autoreconf -fisv autoreconf-default: export WARNINGS= autoreconf-default: Entering directory '.' autoreconf-default: configure.ac: not using Gettext autoreconf-default: running: aclocal --force -I m4 autoreconf-default: configure.ac: tracing autoreconf-default: running: libtoolize --force --install libtoolize-default: putting auxiliary files in '.'. libtoolize-default: linking file './config.guess' libtoolize-default: linking file './config.sub' libtoolize-default: linking file './install-sh' libtoolize-default: linking file './ltmain.sh' libtoolize-default: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize-default: linking file 'm4/libtool.m4' libtoolize-default: linking file 'm4/ltoptions.m4' libtoolize-default: linking file 'm4/ltsugar.m4' libtoolize-default: linking file 'm4/ltversion.m4' libtoolize-default: linking file 'm4/lt~obsolete.m4' autoreconf-default: configure.ac: not using Intltool autoreconf-default: configure.ac: not using Gtkdoc autoreconf-default: running: aclocal --force -I m4 autoreconf-default: running: /usr/bin/autoconf-2.71 --force configure.ac:34: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:34: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:34: the top level autoreconf-default: configure.ac: not using Autoheader autoreconf-default: running: automake --add-missing --force-missing configure.ac:7: installing './compile' configure.ac:4: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' autoreconf-default: Leaving directory '.' + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto' + export CFLAGS + CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto' + export CXXFLAGS + FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto' + export FFLAGS + FCFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto' + export FCFLAGS + '[' -n '' ']' ++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto' ++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g' + ASFLAGS= + export ASFLAGS + export lt_cv_deplibs_check_method=pass_all + lt_cv_deplibs_check_method=pass_all + readlink -e -- ./configure + xargs -ri dirname -- '{}' + xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n' + sort -u + xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess + configure_runstatedir_flags= + grep -qF runstatedir=DIR ./configure + configure_runstatedir_flags=--runstatedir=/var/run + ./configure --build=x86_64-alt-linux --host=x86_64-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --runstatedir=/var/run --without-included-gettext configure: WARNING: unrecognized options: --without-included-gettext checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether make supports the include directive... yes (GNU style) checking for x86_64-alt-linux-gcc... x86_64-alt-linux-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether x86_64-alt-linux-gcc accepts -g... yes checking for x86_64-alt-linux-gcc option to enable C11 features... none needed checking whether x86_64-alt-linux-gcc understands -c and -o together... yes checking dependency style of x86_64-alt-linux-gcc... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for x86_64-alt-linux-gcc... (cached) x86_64-alt-linux-gcc checking whether the compiler supports GNU C... (cached) yes checking whether x86_64-alt-linux-gcc accepts -g... (cached) yes checking for x86_64-alt-linux-gcc option to enable C11 features... (cached) none needed checking whether x86_64-alt-linux-gcc understands -c and -o together... (cached) yes checking dependency style of x86_64-alt-linux-gcc... (cached) none checking for uint8_t... yes checking for uint16_t... yes checking for int32_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for size_t... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking build system type... x86_64-alt-linux-gnu checking host system type... x86_64-alt-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by x86_64-alt-linux-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-alt-linux-gnu file names to x86_64-alt-linux-gnu format... func_convert_file_noop checking how to convert x86_64-alt-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-alt-linux-file... no checking for file... file checking for x86_64-alt-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... (cached) pass_all checking for x86_64-alt-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-alt-linux-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for x86_64-alt-linux-strip... no checking for strip... strip checking for x86_64-alt-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from x86_64-alt-linux-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for x86_64-alt-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-alt-linux-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-alt-linux-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-alt-linux-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-alt-linux-gcc static flag -static works... no checking if x86_64-alt-linux-gcc supports -c -o file.o... yes checking if x86_64-alt-linux-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-alt-linux-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for mkstemp... yes checking for fileno... yes checking for pcre-config... yes checking for getopt.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating doc/Makefile config.status: creating src/version.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --without-included-gettext + make -j16 Making all in src make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' x86_64-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -c -o rng.o rng.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' x86_64-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -c -o fastq-qual.o fastq-qual.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' x86_64-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -c -o common.o common.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' x86_64-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -c -o sw.o sw.c sw.c:40:18: warning: 'sw_mat70_d' defined but not used [-Wunused-const-variable=] 40 | static const int sw_mat70_d[25] = | ^~~~~~~~~~ sw.c:33:18: warning: 'sw_mat50_d' defined but not used [-Wunused-const-variable=] 33 | static const int sw_mat50_d[25] = | ^~~~~~~~~~ make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' x86_64-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -c -o hash_table.o hash_table.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' x86_64-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -c -o parse.o parse.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' x86_64-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -c -o fastq-qscale.o fastq-qscale.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' x86_64-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 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-DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -c -o fastq-uniq.o fastq-uniq.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' x86_64-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 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-D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -c -o fastq-grep.o fastq-grep.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' x86_64-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -c -o fastq-sample.o fastq-sample.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' x86_64-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -c -o fastq-sort.o fastq-sort.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-qual fastq-qual.o common.o parse.o -lm libtool: link: x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-qual fastq-qual.o common.o parse.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-qscale fastq-qscale.o common.o parse.o -lm libtool: link: x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-qscale fastq-qscale.o common.o parse.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-qualadj fastq-qualadj.o common.o parse.o -lm libtool: link: x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-qualadj fastq-qualadj.o common.o parse.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-kmers fastq-kmers.o common.o parse.o -lm libtool: link: x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-kmers fastq-kmers.o common.o parse.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-uniq fastq-uniq.o common.o parse.o hash_table.o -lm libtool: link: x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-uniq fastq-uniq.o common.o parse.o hash_table.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-grep fastq-grep.o common.o parse.o -lpcre -lm libtool: link: x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-grep fastq-grep.o common.o parse.o -lpcre -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-match fastq-match.o common.o parse.o sw.o -lm libtool: link: x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-match fastq-match.o common.o parse.o sw.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-sample fastq-sample.o common.o parse.o rng.o -lm -lm libtool: link: x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-sample fastq-sample.o common.o parse.o rng.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-sort fastq-sort.o common.o parse.o -lm libtool: link: x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o fastq-sort fastq-sort.o common.o parse.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' Making all in tests make[1]: Nothing to be done for 'all'. Making all in doc make[1]: Nothing to be done for 'all'. make[1]: Nothing to be done for 'all-am'. + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.94438 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/fastq-tools-buildroot + : + /bin/rm -rf -- /usr/src/tmp/fastq-tools-buildroot + PATH=/usr/libexec/rpm-build:/usr/src/bin:/usr/bin:/bin:/usr/local/bin:/usr/games + cd fastq-tools-0.8.3 + make 'INSTALL=/usr/libexec/rpm-build/install -p' install DESTDIR=/usr/src/tmp/fastq-tools-buildroot make: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3' Making install in src make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /usr/bin/mkdir -p '/usr/src/tmp/fastq-tools-buildroot/usr/bin' /bin/sh ../libtool --mode=install /usr/libexec/rpm-build/install -p fastq-grep fastq-kmers fastq-match fastq-uniq fastq-qual fastq-sample fastq-qualadj fastq-sort fastq-qscale '/usr/src/tmp/fastq-tools-buildroot/usr/bin' libtool: install: /usr/libexec/rpm-build/install -p fastq-grep /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-grep libtool: install: /usr/libexec/rpm-build/install -p fastq-kmers /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-kmers libtool: install: /usr/libexec/rpm-build/install -p fastq-match /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-match libtool: install: /usr/libexec/rpm-build/install -p fastq-uniq /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-uniq libtool: install: /usr/libexec/rpm-build/install -p fastq-qual /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-qual libtool: install: /usr/libexec/rpm-build/install -p fastq-sample /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-sample libtool: install: /usr/libexec/rpm-build/install -p fastq-qualadj /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-qualadj libtool: install: /usr/libexec/rpm-build/install -p fastq-sort /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-sort libtool: install: /usr/libexec/rpm-build/install -p fastq-qscale /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-qscale make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' Making install in tests make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' Making install in doc make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/doc' make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/doc' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/tmp/fastq-tools-buildroot/usr/share/man/man1' /usr/libexec/rpm-build/install -p -m 644 fastq-grep.1 fastq-kmers.1 fastq-match.1 fastq-uniq.1 fastq-sample.1 fastq-sort.1 fastq-qscale.1 '/usr/src/tmp/fastq-tools-buildroot/usr/share/man/man1' make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/doc' make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/doc' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3' make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3' make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3' make: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3' + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/fastq-tools-buildroot (auto) Verifying and fixing files in /usr/src/tmp/fastq-tools-buildroot (binconfig,pkgconfig,libtool,desktop,gnuconfig) Checking contents of files in /usr/src/tmp/fastq-tools-buildroot/ (default) Compressing files in /usr/src/tmp/fastq-tools-buildroot (auto) Verifying ELF objects in /usr/src/tmp/fastq-tools-buildroot (arch=strict,fhs=strict,lfs=strict,lint=strict,rpath=strict,stack=strict,textrel=strict,unresolved=strict) Splitting links to aliased files under /{,s}bin in /usr/src/tmp/fastq-tools-buildroot Executing(%check): /bin/sh -e /usr/src/tmp/rpm-tmp.65482 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd fastq-tools-0.8.3 + PATH=/usr/src/tmp/fastq-tools-buildroot/usr/bin:/usr/src/bin:/usr/bin:/bin:/usr/local/bin:/usr/games + fastq-grep --version + grep -Fw 'fastq-grep (fastq-tools) 0.8.3' fastq-grep (fastq-tools) 0.8.3 + make -j16 check Making check in src make[1]: Nothing to be done for 'check'. Making check in tests make random_fastq cat_fastq make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' x86_64-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -c -o random_fastq.o random_fastq.c make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' x86_64-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -c -o cat_fastq.o cat_fastq.c make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' /bin/sh ../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o random_fastq random_fastq.o -lm libtool: link: x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o random_fastq random_fastq.o -lm make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' /bin/sh ../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o cat_fastq cat_fastq.o -lm libtool: link: x86_64-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I/usr/include/pcre -o cat_fastq cat_fastq.o -lm make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make check-TESTS make[3]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' PASS: parse_fastq make[3]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make[3]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' ============================================================================ Testsuite summary for fastq-tools 0.8.3 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[3]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' Making check in doc make[1]: Nothing to be done for 'check'. make[1]: Nothing to be done for 'check-am'. + echo -ne '@a:a\nAAA\n+\n000\n@b:b\nBBB\n+\n111\n@c:c\nCCC\n+\n222\n' + fastq-grep BBB abc + fastq-grep -v BBB abc + fastq-sort b ac + sha256sum --check abc: OK b: OK ac: OK + exit 0 Processing files: fastq-tools-0.8.3-alt1 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.65482 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd fastq-tools-0.8.3 + DOCDIR=/usr/src/tmp/fastq-tools-buildroot/usr/share/doc/fastq-tools + export DOCDIR + /bin/mkdir -p /usr/src/tmp/fastq-tools-buildroot/usr/share/doc/fastq-tools + cp -prL AUTHORS COPYING README.md /usr/src/tmp/fastq-tools-buildroot/usr/share/doc/fastq-tools + chmod -R go-w /usr/src/tmp/fastq-tools-buildroot/usr/share/doc/fastq-tools + chmod -R a+rX /usr/src/tmp/fastq-tools-buildroot/usr/share/doc/fastq-tools + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.XmZjnF find-provides: running scripts (debuginfo,lib,pam,perl,pkgconfig,python,python3,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.mtsA09 find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,systemd-services) Requires: /lib64/ld-linux-x86-64.so.2, libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.34)(64bit), libc.so.6(GLIBC_2.38)(64bit), libc.so.6(GLIBC_2.4)(64bit), libm.so.6(GLIBC_2.2.5)(64bit), libpcre.so.3()(64bit) >= set:igW8KBZGd4, rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.7vLAmx Creating fastq-tools-debuginfo package Processing files: fastq-tools-debuginfo-0.8.3-alt1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.TtOxke find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.uvidjw find-requires: running scripts (debuginfo) Requires: fastq-tools = 0.8.3-alt1, /usr/lib/debug/lib64/ld-linux-x86-64.so.2.debug, debug64(libc.so.6), debug64(libm.so.6), debug64(libpcre.so.3) Adding to fastq-tools-debuginfo a strict dependency on fastq-tools Wrote: /usr/src/RPM/RPMS/x86_64/fastq-tools-0.8.3-alt1.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/fastq-tools-debuginfo-0.8.3-alt1.x86_64.rpm (w2.lzdio) 5.96user 7.17system 0:13.03elapsed 100%CPU (0avgtext+0avgdata 32840maxresident)k 0inputs+0outputs (0major+1304302minor)pagefaults 0swaps 3.30user 2.73system 0:22.19elapsed 27%CPU (0avgtext+0avgdata 136332maxresident)k 1160inputs+0outputs (0major+195699minor)pagefaults 0swaps --- fastq-tools-0.8.3-alt1.x86_64.rpm.repo 2024-06-05 08:31:41.292898904 +0000 +++ fastq-tools-0.8.3-alt1.x86_64.rpm.hasher 2024-10-18 15:36:37.142014614 +0000 @@ -34,11 +34,11 @@ Provides: fastq-tools = 0.8.3-alt1:sisyphus+350372.600.6.1 -File: /usr/bin/fastq-grep 100755 root:root ebe3626e0a3d26933794de4b674c98e1 -File: /usr/bin/fastq-kmers 100755 root:root 2c7b1b3c3bdc784d9833abf86b08e32d -File: /usr/bin/fastq-match 100755 root:root d570679f71d5abc7792771fc15c6d549 -File: /usr/bin/fastq-qscale 100755 root:root aa1c7b7eacd1d2a333c9011d4a2b3777 -File: /usr/bin/fastq-qual 100755 root:root 9353ed6db585631dd3fb51ba20efa6d7 -File: /usr/bin/fastq-qualadj 100755 root:root 8cb9ff11c73e25aab15a1ee990a5c3b1 -File: /usr/bin/fastq-sample 100755 root:root 4d86b97fad7767cb856799a7fca1228f -File: /usr/bin/fastq-sort 100755 root:root 5abd9ce0e3d8627dc8e9ba277e1866ea -File: /usr/bin/fastq-uniq 100755 root:root c1747626cc9b9379ea6312cc3bf4998f +File: /usr/bin/fastq-grep 100755 root:root c76760310d9c66c023a65c8e529a5de7 +File: /usr/bin/fastq-kmers 100755 root:root 4849b92c09e51a4f267adb149dec3899 +File: /usr/bin/fastq-match 100755 root:root f9c0894847d392fcce2ab39aa1a0d9e5 +File: /usr/bin/fastq-qscale 100755 root:root 2dca1526b7ef8442f5f9658867eb559c +File: /usr/bin/fastq-qual 100755 root:root 5f89d785f69fad1a4b1faf0a7b235714 +File: /usr/bin/fastq-qualadj 100755 root:root 3bbca62b41c701d5f290ab9cc4775626 +File: /usr/bin/fastq-sample 100755 root:root 6c6ab4144fa269b4d80a7c11d667c290 +File: /usr/bin/fastq-sort 100755 root:root 0a54366aeb3982ddc5dc578c1e909fcc +File: /usr/bin/fastq-uniq 100755 root:root bfaf348750a30fe2d9c57743fe270102 File: /usr/share/doc/fastq-tools 40755 root:root @@ -54,2 +54,2 @@ File: /usr/share/man/man1/fastq-uniq.1.xz 100644 root:root 997994df49938631b8ac68e8ec7e474f -RPMIdentity: b77158ef98c83dbf8568b1776138b163ba4fabf52ddbb16664eba1759673f15b474187ed4ba44998214702b3a2b0dd0ed496d8d57125447d0400b56c31d5bff7 +RPMIdentity: bc842042c5fc1de2631bdf3ee503daa719079440f912cc31c89dd69e03dce2d84928a55751629dc0918b070df441a189948f1b428678ec62300e348e7e2b55d9 --- fastq-tools-debuginfo-0.8.3-alt1.x86_64.rpm.repo 2024-06-05 08:31:41.434900273 +0000 +++ fastq-tools-debuginfo-0.8.3-alt1.x86_64.rpm.hasher 2024-10-18 15:36:37.212015837 +0000 @@ -1,27 +1,28 @@ -/usr/lib/debug/.build-id/08 40755 root:root -/usr/lib/debug/.build-id/08/3b89cd8d25feb853cd77b88369da24827fa8e6 120777 root:root ../../../../bin/fastq-uniq -/usr/lib/debug/.build-id/08/3b89cd8d25feb853cd77b88369da24827fa8e6.debug 120777 root:root ../../usr/bin/fastq-uniq.debug -/usr/lib/debug/.build-id/08/583978023859a295f0d264e0d44e3fc4d57110 120777 root:root ../../../../bin/fastq-qualadj -/usr/lib/debug/.build-id/08/583978023859a295f0d264e0d44e3fc4d57110.debug 120777 root:root ../../usr/bin/fastq-qualadj.debug -/usr/lib/debug/.build-id/2d 40755 root:root -/usr/lib/debug/.build-id/2d/2c9d4e5367f3da5f644f8064f924a97c857071 120777 root:root ../../../../bin/fastq-match -/usr/lib/debug/.build-id/2d/2c9d4e5367f3da5f644f8064f924a97c857071.debug 120777 root:root ../../usr/bin/fastq-match.debug -/usr/lib/debug/.build-id/7c 40755 root:root -/usr/lib/debug/.build-id/7c/79d384ae27f9af6546a6cc7dc0ad84548e8e4f 120777 root:root ../../../../bin/fastq-qscale -/usr/lib/debug/.build-id/7c/79d384ae27f9af6546a6cc7dc0ad84548e8e4f.debug 120777 root:root ../../usr/bin/fastq-qscale.debug -/usr/lib/debug/.build-id/7e 40755 root:root -/usr/lib/debug/.build-id/7e/7902e3f86736e8783c2078674f427535d64e97 120777 root:root ../../../../bin/fastq-kmers -/usr/lib/debug/.build-id/7e/7902e3f86736e8783c2078674f427535d64e97.debug 120777 root:root ../../usr/bin/fastq-kmers.debug -/usr/lib/debug/.build-id/92 40755 root:root -/usr/lib/debug/.build-id/92/192dff6c8ccbefef7920e8b51f28f5b4661eec 120777 root:root ../../../../bin/fastq-sort -/usr/lib/debug/.build-id/92/192dff6c8ccbefef7920e8b51f28f5b4661eec.debug 120777 root:root ../../usr/bin/fastq-sort.debug -/usr/lib/debug/.build-id/b1 40755 root:root -/usr/lib/debug/.build-id/b1/de23d4992de8b2e1f55870815cbede639a03b3 120777 root:root ../../../../bin/fastq-grep -/usr/lib/debug/.build-id/b1/de23d4992de8b2e1f55870815cbede639a03b3.debug 120777 root:root ../../usr/bin/fastq-grep.debug +/usr/lib/debug/.build-id/15 40755 root:root +/usr/lib/debug/.build-id/15/bda9e3fcdb6228f10d1dcf09347ddc7aaae389 120777 root:root ../../../../bin/fastq-qualadj +/usr/lib/debug/.build-id/15/bda9e3fcdb6228f10d1dcf09347ddc7aaae389.debug 120777 root:root ../../usr/bin/fastq-qualadj.debug +/usr/lib/debug/.build-id/40 40755 root:root +/usr/lib/debug/.build-id/40/d72bea29568f04307540a60fdefc030b0a402d 120777 root:root ../../../../bin/fastq-sample +/usr/lib/debug/.build-id/40/d72bea29568f04307540a60fdefc030b0a402d.debug 120777 root:root ../../usr/bin/fastq-sample.debug 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