<86>Dec 4 15:51:19 userdel[3197110]: delete user 'rooter' <86>Dec 4 15:51:19 userdel[3197110]: removed group 'rooter' owned by 'rooter' <86>Dec 4 15:51:19 userdel[3197110]: removed shadow group 'rooter' owned by 'rooter' <86>Dec 4 15:51:19 groupadd[3197118]: group added to /etc/group: name=rooter, GID=669 <86>Dec 4 15:51:19 groupadd[3197118]: group added to /etc/gshadow: name=rooter <86>Dec 4 15:51:19 groupadd[3197118]: new group: name=rooter, GID=669 <86>Dec 4 15:51:19 useradd[3197125]: new user: name=rooter, UID=669, GID=669, home=/root, shell=/bin/bash <86>Dec 4 15:51:19 userdel[3197134]: delete user 'builder' <86>Dec 4 15:51:19 userdel[3197134]: removed group 'builder' owned by 'builder' <86>Dec 4 15:51:19 userdel[3197134]: removed shadow group 'builder' owned by 'builder' <86>Dec 4 15:51:19 groupadd[3197144]: group added to /etc/group: name=builder, GID=670 <86>Dec 4 15:51:19 groupadd[3197144]: group added to /etc/gshadow: name=builder <86>Dec 4 15:51:19 groupadd[3197144]: new group: name=builder, GID=670 <86>Dec 4 15:51:19 useradd[3197149]: new user: name=builder, UID=670, GID=670, home=/usr/src, shell=/bin/bash <13>Dec 4 15:51:22 rpmi: xorg-proto-devel-2020.1-alt1 sisyphus+250406.100.1.1 1587554810 installed <13>Dec 4 15:51:22 rpmi: libglvnd-7:1.3.2-alt1 sisyphus+254610.100.1.1 1594124268 installed <13>Dec 4 15:51:22 rpmi: libexpat-2.2.10-alt1 sisyphus+259966.100.1.1 1602824518 installed <13>Dec 4 15:51:22 rpmi: libpng16-1.6.37-alt1 sisyphus+236677.100.2.1 1566917998 installed <13>Dec 4 15:51:22 rpmi: libjpeg-2:2.0.2-alt1 sisyphus+226996.100.1.1 1554902907 installed <13>Dec 4 15:51:22 rpmi: libXau-1.0.9-alt1 sisyphus+223149.200.2.1 1551268152 installed <13>Dec 4 15:51:22 rpmi: libwayland-server-1.18.0-alt1 sisyphus+255795.100.1.1 1596475648 installed <13>Dec 4 15:51:23 rpmi: libicu67-1:6.7.1-alt2 sisyphus+252432.100.2.2 1590796126 installed <13>Dec 4 15:51:23 rpmi: libgraphite2-1.3.14-alt2 sisyphus+250009.100.1.1 1586943065 installed <13>Dec 4 15:51:23 rpmi: libgraphite2-devel-1.3.14-alt2 sisyphus+250009.100.1.1 1586943065 installed <13>Dec 4 15:51:23 rpmi: icu-utils-1:6.7.1-alt2 sisyphus+252432.100.2.2 1590796126 installed <13>Dec 4 15:51:23 rpmi: libicu-devel-1:6.7.1-alt2 sisyphus+252432.100.2.2 1590796126 installed <13>Dec 4 15:51:23 rpmi: libXau-devel-1.0.9-alt1 sisyphus+223149.200.2.1 1551268152 installed <13>Dec 4 15:51:23 rpmi: libOpenGL-7:1.3.2-alt1 sisyphus+254610.100.1.1 1594124268 installed <13>Dec 4 15:51:23 rpmi: libGLES-7:1.3.2-alt1 sisyphus+254610.100.1.1 1594124268 installed <13>Dec 4 15:51:23 rpmi: zlib-devel-1.2.11-alt1 sisyphus+221902.6000.4.1 1550601058 installed <13>Dec 4 15:51:23 rpmi: libtinfo-devel-6.2.20201107-alt1 sisyphus+261749.100.1.1 1605292929 installed <13>Dec 4 15:51:23 rpmi: libncurses-devel-6.2.20201107-alt1 sisyphus+261749.100.1.1 1605292929 installed <13>Dec 4 15:51:23 rpmi: libxshmfence-1.3-alt1 sisyphus+223149.1000.2.1 1551268571 installed <13>Dec 4 15:51:23 rpmi: libX11-locales-3:1.6.12-alt1 sisyphus+256796.100.1.1 1598422159 installed <13>Dec 4 15:51:23 rpmi: libXdmcp-1.1.3-alt1 sisyphus+225206.600.1.2 1552949353 installed <13>Dec 4 15:51:23 rpmi: libxcb-1.14-alt1 sisyphus+247358.200.1.3 1583854228 installed <13>Dec 4 15:51:23 rpmi: libX11-3:1.6.12-alt1 sisyphus+256796.100.1.1 1598422166 installed <13>Dec 4 15:51:23 rpmi: libXext-1.3.4-alt1 sisyphus+225206.700.1.2 1552949429 installed <13>Dec 4 15:51:23 rpmi: libXfixes-5.0.3-alt1 sisyphus+226736.100.2.2 1554614841 installed <13>Dec 4 15:51:23 rpmi: libXrender-0.9.10-alt1 sisyphus+261890.100.1.1 1605595177 installed <13>Dec 4 15:51:23 rpmi: libXcursor-1.2.0-alt1 sisyphus+225206.400.1.2 1552949218 installed <13>Dec 4 15:51:23 rpmi: libXinerama-1.1.4-alt1 sisyphus+223149.300.2.1 1551268216 installed <13>Dec 4 15:51:23 rpmi: libXxf86vm-1.1.4-alt2 1527672187 installed <13>Dec 4 15:51:23 rpmi: libXdamage-1.1.5-alt1 sisyphus+225206.500.1.2 1552949286 installed <13>Dec 4 15:51:24 rpmi: libxcb-devel-1.14-alt1 sisyphus+247358.200.1.3 1583854228 installed <13>Dec 4 15:51:24 rpmi: libX11-devel-3:1.6.12-alt1 sisyphus+256796.100.1.1 1598422166 installed <13>Dec 4 15:51:24 rpmi: libXrender-devel-0.9.10-alt1 sisyphus+261890.100.1.1 1605595177 installed <13>Dec 4 15:51:24 rpmi: libwayland-client-1.18.0-alt1 sisyphus+255795.100.1.1 1596475648 installed <13>Dec 4 15:51:24 rpmi: libpciaccess-1:0.16-alt1 sisyphus+234814.100.1.1 1563438291 installed <13>Dec 4 15:51:24 rpmi: libdrm-1:2.4.103-alt1 sisyphus+261080.100.1.1 1604598368 installed <13>Dec 4 15:51:24 rpmi: libGLX-mesa-4:20.2.3-alt1 sisyphus+262368.100.1.1 1606200337 installed <13>Dec 4 15:51:24 rpmi: libGLX-7:1.3.2-alt1 sisyphus+254610.100.1.1 1594124268 installed <13>Dec 4 15:51:24 rpmi: libGL-7:1.3.2-alt1 sisyphus+254610.100.1.1 1594124268 installed <13>Dec 4 15:51:24 rpmi: libGLU-4:9.0.1-alt1 sisyphus+248864.100.1.1 1585556461 installed <13>Dec 4 15:51:24 rpmi: libgbm-4:20.2.3-alt1 sisyphus+262368.100.1.1 1606200337 installed <13>Dec 4 15:51:24 rpmi: libEGL-mesa-4:20.2.3-alt1 sisyphus+262368.100.1.1 1606200337 installed <13>Dec 4 15:51:24 rpmi: libEGL-7:1.3.2-alt1 sisyphus+254610.100.1.1 1594124268 installed <13>Dec 4 15:51:24 rpmi: libglvnd-devel-7:1.3.2-alt1 sisyphus+254610.100.1.1 1594124268 installed <13>Dec 4 15:51:24 rpmi: libGL-devel-4:20.2.3-alt1 sisyphus+262368.100.1.1 1606200337 installed <13>Dec 4 15:51:24 rpmi: libGLU-devel-4:9.0.1-alt1 sisyphus+248864.100.1.1 1585556461 installed <13>Dec 4 15:51:24 rpmi: gcc-c++-common-1.4.26-alt1 icarus+262780.400.2.1 1606887104 installed <13>Dec 4 15:51:25 rpmi: libstdc++10-devel-10.2.1-alt2 icarus+262842.100.1.1 1606948274 installed <13>Dec 4 15:51:26 rpmi: gcc10-c++-10.2.1-alt2 icarus+262842.100.1.1 1606948274 installed <13>Dec 4 15:51:26 rpmi: libbrotlicommon-1.0.9-alt2 sisyphus+257777.100.1.1 1599688017 installed <13>Dec 4 15:51:26 rpmi: libbrotlidec-1.0.9-alt2 sisyphus+257777.100.1.1 1599688017 installed <13>Dec 4 15:51:26 rpmi: libharfbuzz-2.6.8-alt1 sisyphus+254028.100.1.1 1593106819 installed <13>Dec 4 15:51:26 rpmi: libfreetype-2.10.4-alt2 sisyphus+260293.100.2.1 1604479496 installed <13>Dec 4 15:51:26 rpmi: fontconfig-2.13.1-alt1 sisyphus+257555.100.1.1 1599475160 installed Updating fonts cache: <29>Dec 4 15:51:27 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Dec 4 15:51:27 rpmi: libXft-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987708 installed <13>Dec 4 15:51:27 rpmi: libfltk13-1.3.5-alt0.1.rc1 sisyphus+221936.100.1.1 1550500973 installed <13>Dec 4 15:51:27 rpmi: libharfbuzz-icu-2.6.8-alt1 sisyphus+254028.100.1.1 1593106819 installed <13>Dec 4 15:51:27 rpmi: libharfbuzz-gobject-2.6.8-alt1 sisyphus+254028.100.1.1 1593106819 installed <13>Dec 4 15:51:27 rpmi: libgdbm-1.8.3-alt10 1454943334 installed <13>Dec 4 15:51:27 rpmi: xml-utils-1:2.9.10-alt4 sisyphus+261132.100.1.1 1604669137 installed <13>Dec 4 15:51:27 rpmi: rpm-build-gir-0.7.3-alt3 sisyphus+242150.100.1.1 1575312005 installed <13>Dec 4 15:51:27 rpmi: libp11-kit-0.23.15-alt2 sisyphus+252784.100.2.2 1591274901 installed <13>Dec 4 15:51:27 rpmi: libtasn1-4.16.0-alt1 sisyphus+245480.100.1.1 1580825062 installed <13>Dec 4 15:51:27 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Dec 4 15:51:27 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Dec 4 15:51:27 rpmi: ca-certificates-2020.10.22-alt1 sisyphus+260224.300.2.1 1603549301 installed <13>Dec 4 15:51:27 rpmi: ca-trust-0.1.2-alt1 sisyphus+233348.100.1.1 1561653823 installed <13>Dec 4 15:51:27 rpmi: p11-kit-trust-0.23.15-alt2 sisyphus+252784.100.2.2 1591274901 installed <13>Dec 4 15:51:27 rpmi: libcrypto1.1-1.1.1g-alt1 sisyphus+249982.60.8.1 1587743711 installed <13>Dec 4 15:51:27 rpmi: libssl1.1-1.1.1g-alt1 sisyphus+249982.60.8.1 1587743711 installed <13>Dec 4 15:51:27 rpmi: libpython3-3.8.6-alt1 sisyphus+259085.100.2.1 1601904174 installed <13>Dec 4 15:51:27 rpmi: python3-3.8.6-alt1 sisyphus+259085.100.2.1 1601904174 installed <13>Dec 4 15:51:28 rpmi: python3-base-3.8.6-alt1 sisyphus+259085.100.2.1 1601904174 installed <13>Dec 4 15:51:28 rpmi: glib2-devel-2.66.3-alt1 sisyphus+261863.100.1.1 1605540253 installed <13>Dec 4 15:51:28 rpmi: libfreetype-devel-2.10.4-alt2 sisyphus+260293.100.2.1 1604479496 installed <13>Dec 4 15:51:28 rpmi: libharfbuzz-devel-2.6.8-alt1 sisyphus+254028.100.1.1 1593106819 installed <13>Dec 4 15:51:28 rpmi: fontconfig-devel-2.13.1-alt1 sisyphus+257555.100.1.1 1599475160 installed <13>Dec 4 15:51:28 rpmi: tests-for-installed-python3-pkgs-0.1.13.1-alt2 1535450458 installed <13>Dec 4 15:51:28 rpmi: rpm-build-python3-0.1.13.1-alt2 1535450458 installed <13>Dec 4 15:51:28 rpmi: python3-dev-3.8.6-alt1 sisyphus+259085.100.2.1 1601904174 installed <13>Dec 4 15:51:28 rpmi: libXft-devel-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987708 installed <13>Dec 4 15:51:28 rpmi: libfltk-devel-1.3.5-alt0.1.rc1 sisyphus+221936.100.1.1 1550500973 installed <13>Dec 4 15:51:28 rpmi: gcc-c++-10-alt1 icarus+262780.300.2.1 1606888886 installed <13>Dec 4 15:51:28 rpmi: libXcursor-devel-1.2.0-alt1 sisyphus+225206.400.1.2 1552949218 installed <13>Dec 4 15:51:28 rpmi: libXext-devel-1.3.4-alt1 sisyphus+225206.700.1.2 1552949429 installed <13>Dec 4 15:51:28 rpmi: libXfixes-devel-5.0.3-alt1 sisyphus+226736.100.2.2 1554614841 installed <13>Dec 4 15:51:28 rpmi: libXinerama-devel-1.1.4-alt1 sisyphus+223149.300.2.1 1551268216 installed <13>Dec 4 15:51:28 rpmi: libpng-devel-1.6.37-alt1 sisyphus+236677.100.2.1 1566917998 installed <13>Dec 4 15:51:28 rpmi: libjpeg-devel-2:2.0.2-alt1 sisyphus+226996.100.1.1 1554902907 installed Building target platforms: i586 Building for target i586 Wrote: /usr/src/in/nosrpm/seaview-4.7-alt1.nosrc.rpm Installing seaview-4.7-alt1.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.88433 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf seaview + echo 'Source #0 (seaview_4.7.tar.gz):' Source #0 (seaview_4.7.tar.gz): + /bin/gzip -dc /usr/src/RPM/SOURCES/seaview_4.7.tar.gz + /bin/tar -xf - + cd seaview + /bin/chmod -c -Rf u+rwX,go-w . + chmod -x addbootstrap.cxx align.cxx comlines.cxx concatenate.cxx custom.cxx least_squares_brl.cxx load_seq.cxx nexus.cxx pdf_or_ps.cxx pseudoterminal.cxx racnuc_fetch.cxx regions.cxx resource.cxx seaview.cxx statistics.cxx svg.cxx tbe.cxx threads.cxx treedraw.cxx trees.cxx unrooted.cxx use_mase_files.cxx viewasprots.cxx win32_extras.cxx xfmatpt.cxx + chmod -x csrc/bionj.c csrc/dnapars.c csrc/lwl.c csrc/md5.c csrc/misc_acnuc.c csrc/parser.c csrc/parser.h csrc/phylip.c csrc/phylip.h csrc/phyml_util.c csrc/phyml_util.h csrc/protpars.c csrc/raa_acnuc.c csrc/raa_acnuc.h csrc/seq.c csrc/seq.h csrc/zsockr.c + sed -i 's|^\(CFLAGS.*\)|\1 -g -DFL_LIBRARY|' Makefile + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.31103 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd seaview + make -j8 make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF load_seq.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF custom.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF resource.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF comlines.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF regions.cxx regions.cxx: In function 'int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)': regions.cxx:305:9: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 305 | system(cmd); | ~~~~~~^~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF align.cxx align.cxx: In function 'void replace_stars(char*)': align.cxx:1298:7: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1298 | fread(all, 1, l, in); | ~~~~~^~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF viewasprots.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF xfmatpt.cxx xfmatpt.cxx:208:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 208 | Fl_Widget *postscript = cre_button(fin, curr_y, &width, but_height, fontsize, "Write "PDF_OR_PS); | ^ xfmatpt.cxx:873:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 873 | fl_message("Dot plot is now in file\n%s\nin "PDF_OR_PS" format", surface->outfname()); | ^ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF concatenate.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF racnuc_fetch.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF least_squares_brl.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF use_mase_files.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF pseudoterminal.cxx pseudoterminal.cxx: In function 'int run_external_prog_in_pseudoterm(char*, const char*, const char*)': pseudoterminal.cxx:342:11: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 342 | freopen(dialogfname, "r", stdin); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ pseudoterminal.cxx:344:10: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 344 | freopen(slavename, "a", stderr); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF nexus.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF addbootstrap.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF threads.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF pdf_or_ps.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -I. -Dunix -O3 -I. -Icsrc -DNO_PDF FL/Fl_Native_File_Chooser_FLTK.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF statistics.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF tbe.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/parser.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF svg.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF unrooted.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/md5.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/zsockr.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/misc_acnuc.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/dnapars.c csrc/dnapars.c: In function 'dnapars': csrc/dnapars.c:1685:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1685 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/raa_acnuc.c In function 'fill_gfrag_buf', inlined from 'raa_gfrag' at csrc/raa_acnuc.c:599:8: csrc/raa_acnuc.c:581:39: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 581 | raa_current_db->gfrag_data.buffer[lu] = 0; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from csrc/raa_acnuc.c:1: csrc/raa_acnuc.c: In function 'raa_gfrag': csrc/raa_acnuc.h:34:7: note: at offset [0, 2147483647] to object 'buffer' with size 10001 declared here 34 | char buffer[RAA_GFRAG_BSIZE + 1]; | ^~~~~~ In function 'fill_gfrag_buf', inlined from 'raa_gfrag' at csrc/raa_acnuc.c:599:8, inlined from 'raa_translate_cds' at csrc/raa_acnuc.c:2754:6: csrc/raa_acnuc.c:581:39: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 581 | raa_current_db->gfrag_data.buffer[lu] = 0; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from csrc/raa_acnuc.c:1: csrc/raa_acnuc.c: In function 'raa_translate_cds': csrc/raa_acnuc.h:34:7: note: at offset [0, 2147483647] to object 'buffer' with size 10001 declared here 34 | char buffer[RAA_GFRAG_BSIZE + 1]; | ^~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF seaview.cxx seaview.cxx:3352:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 3352 | strcat(suggested, "."PDF_OR_PS_EXT); | ^ seaview.cxx:3462:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 3462 | pdf_form->label("Set "PDF_OR_PS" output options"); | ^ seaview.cxx:5051:6: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 5051 | {"Prepare "PDF_OR_PS"", 0, file_menu_callback, 0, 0}, | ^ seaview.cxx:5052:6: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 5052 | {""PDF_OR_PS" options...", 0, file_menu_callback, 0, FL_MENU_DIVIDER}, | ^ seaview.cxx: In function 'void delete_tmp_filename(const char*)': seaview.cxx:646:9: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 646 | system(fname); | ~~~~~~^~~~~~~ seaview.cxx: In function 'char* run_and_close_native_file_chooser(Fl_Native_File_Chooser*, int)': seaview.cxx:2909:38: warning: ignoring return value of 'int chdir(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2909 | if( *last_visited_directory )chdir(last_visited_directory); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:508, from seaview.h:5, from seaview.cxx:67: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void goto_callback(Fl_Widget*, void*)' at seaview.cxx:2738:9: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin___strncpy_chk(char*, const char*, unsigned int, unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seaview.cxx: In function 'void goto_callback(Fl_Widget*, void*)': seaview.cxx:2736:12: note: length computed here 2736 | l = strlen(p); | ~~~~~~^~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF trees.cxx trees.cxx: In function 'void run_phyml_callback(Fl_Widget*, void*)': trees.cxx:1295:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1295 | fread(bootstrap_trees, l, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function 'void command_line_phylogeny(int, char**)': trees.cxx:2788:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2788 | fread(utree, s, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/bionj.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/lwl.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/protpars.c csrc/protpars.c: In function 'protpars': csrc/protpars.c:2097:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 2097 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/phyml_util.c csrc/phyml_util.c: In function 'Warn_And_Exit': csrc/phyml_util.c:47:2: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 47 | fscanf(stdin,"%c",&c); | ^~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/phylip.c In file included from /usr/include/stdio.h:867, from csrc/phylip.c:32: In function 'fgets', inlined from 'getstryng' at csrc/phylip.c:236:11, inlined from 'readlong' at csrc/phylip.c:467:5: /usr/include/bits/stdio2.h:263:9: warning: call to '__fgets_chk_warn' declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 263 | return __fgets_chk_warn (__s, __bos (__s), __n, __stream); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'fgets', inlined from 'getstryng' at csrc/phylip.c:236:11, inlined from 'initcategs' at csrc/phylip.c:603:5: /usr/include/bits/stdio2.h:263:9: warning: call to '__fgets_chk_warn' declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 263 | return __fgets_chk_warn (__s, __bos (__s), __n, __stream); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'fgets', inlined from 'getstryng' at csrc/phylip.c:236:11, inlined from 'initprobcat' at csrc/phylip.c:634:5: /usr/include/bits/stdio2.h:263:9: warning: call to '__fgets_chk_warn' declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 263 | return __fgets_chk_warn (__s, __bos (__s), __n, __stream); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'fgets', inlined from 'getstryng' at csrc/phylip.c:236:11, inlined from 'initfreqs' at csrc/phylip.c:1021:5: /usr/include/bits/stdio2.h:263:9: warning: call to '__fgets_chk_warn' declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 263 | return __fgets_chk_warn (__s, __bos (__s), __n, __stream); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'fgets', inlined from 'getstryng' at csrc/phylip.c:236:11, inlined from 'readlong' at csrc/phylip.c:467:5, inlined from 'initnumlines' at csrc/phylip.c:1126:20: /usr/include/bits/stdio2.h:263:9: warning: call to '__fgets_chk_warn' declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 263 | return __fgets_chk_warn (__s, __bos (__s), __n, __stream); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF treedraw.cxx treedraw.cxx:325:6: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 325 | {"Save as "PDF_OR_PS"", 0, file_callback, NULL, 0}, | ^ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/seq.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -o seaview seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o Fl_Native_File_Chooser_FLTK.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -ldl -lpthread -lz /usr/bin/ld.default: dnapars.o:(.bss+0x0): multiple definition of `progname'; seaview.o:(.data.rel.local+0x0): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2231): multiple definition of `usertree'; dnapars.o:(.bss+0x1fdd): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2250): multiple definition of `chars'; dnapars.o:(.bss+0x2008): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x1f8c): multiple definition of `fsteps'; dnapars.o:(.bss+0x5c): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x220c): multiple definition of `threshwt'; dnapars.o:(.bss+0x48): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x20): multiple definition of `nsteps'; dnapars.o:(.bss+0x60): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x1f68): multiple definition of `minwhich'; dnapars.o:(.bss+0x1fa4): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2218): multiple definition of `treenode'; dnapars.o:(.bss+0x1fb0): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2254): multiple definition of `root'; dnapars.o:(.bss+0x200c): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x1f64): multiple definition of `recompute'; dnapars.o:(.bss+0x1fa0): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x1f78): multiple definition of `temp1'; dnapars.o:(.bss+0x38): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x1f7c): multiple definition of `temp'; dnapars.o:(.bss+0x3c): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x4): multiple definition of `place'; dnapars.o:(.bss+0x50): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x1f65): multiple definition of `lastrearr'; dnapars.o:(.bss+0x1fa1): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x1f60): multiple definition of `there'; dnapars.o:(.bss+0x58): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x1f88): multiple definition of `bestrees'; dnapars.o:(.bss+0x4c): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x0): multiple definition of `names'; dnapars.o:(.bss+0x8): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x224c): multiple definition of `col'; dnapars.o:(.bss+0x2004): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x222e): multiple definition of `trout'; dnapars.o:(.bss+0x1fd8): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x21f0): multiple definition of `enterorder'; dnapars.o:(.bss+0x1fac): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2232): multiple definition of `jumble'; dnapars.o:(.bss+0x1fde): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2240): multiple definition of `njumble'; dnapars.o:(.bss+0x1ff8): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x223c): multiple definition of `jumb'; dnapars.o:(.bss+0x1ff4): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x21f4): multiple definition of `seed'; dnapars.o:(.bss+0x1fb4): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x1f80): multiple definition of `garbage'; dnapars.o:(.bss+0x40): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x1f6c): multiple definition of `progname'; seaview.o:(.data.rel.local+0x0): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2229): multiple definition of `mulsets'; dnapars.o:(.bss+0x1fd4): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2248): multiple definition of `msets'; dnapars.o:(.bss+0x2000): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2228): multiple definition of `firstset'; dnapars.o:(.bss+0x1fd2): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x222f): multiple definition of `thresh'; dnapars.o:(.bss+0x1fdc): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2230): multiple definition of `weights'; dnapars.o:(.bss+0x1fdb): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x222d): multiple definition of `progress'; dnapars.o:(.bss+0x1fd7): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x222c): multiple definition of `stepbox'; dnapars.o:(.bss+0x1fd6): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x222a): multiple definition of `ancseq'; dnapars.o:(.bss+0x1fd5): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2244): multiple definition of `ith'; dnapars.o:(.bss+0x1ffc): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x222b): multiple definition of `justwts'; dnapars.o:(.bss+0x1fd3): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2210): multiple definition of `threshold'; dnapars.o:(.bss+0x1fe0): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2328): multiple definition of `outtreename'; dnapars.o:(.bss+0x20e8): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2234): multiple definition of `inseed0'; dnapars.o:(.bss+0x1fe8): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2238): multiple definition of `inseed'; dnapars.o:(.bss+0x1fec): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2260): multiple definition of `weightfilename'; dnapars.o:(.bss+0x2020): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2340): multiple definition of `intreename'; dnapars.o:(.bss+0x2100): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2420): multiple definition of `outfilename'; dnapars.o:(.bss+0x21e0): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x2500): multiple definition of `infilename'; dnapars.o:(.bss+0x22c0): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x25c8): multiple definition of `firstplotblock'; dnapars.o:(.bss+0x2388): first defined here /usr/bin/ld.default: protpars.o:(.bss+0x25c9): multiple definition of `javarun'; dnapars.o:(.bss+0x2389): first defined here /usr/bin/ld.default: seq.o:(.bss+0x34): multiple definition of `firstplotblock'; dnapars.o:(.bss+0x2388): first defined here /usr/bin/ld.default: seq.o:(.bss+0x35): multiple definition of `javarun'; dnapars.o:(.bss+0x2389): first defined here /usr/bin/ld.default: phylip.o:(.bss+0x3d): multiple definition of `javarun'; dnapars.o:(.bss+0x2389): first defined here /usr/bin/ld.default: phylip.o:(.bss+0x3c): multiple definition of `firstplotblock'; dnapars.o:(.bss+0x2388): first defined here collect2: error: ld returned 1 exit status make: *** [Makefile:46: seaview] Error 1 make: Leaving directory '/usr/src/RPM/BUILD/seaview' error: Bad exit status from /usr/src/tmp/rpm-tmp.31103 (%build) RPM build errors: Bad exit status from /usr/src/tmp/rpm-tmp.31103 (%build) Command exited with non-zero status 1 24.90user 0.95system 0:05.48elapsed 471%CPU (0avgtext+0avgdata 62332maxresident)k 0inputs+0outputs (0major+322189minor)pagefaults 0swaps hsh-rebuild: rebuild of `seaview-4.7-alt1.src.rpm' failed. Command exited with non-zero status 1 34.11user 3.77system 0:18.33elapsed 206%CPU (0avgtext+0avgdata 109236maxresident)k 2024inputs+0outputs (0major+619563minor)pagefaults 0swaps