<86>Dec 4 18:00:24 userdel[3741335]: delete user 'rooter' <86>Dec 4 18:00:24 userdel[3741335]: removed group 'rooter' owned by 'rooter' <86>Dec 4 18:00:24 userdel[3741335]: removed shadow group 'rooter' owned by 'rooter' <86>Dec 4 18:00:24 groupadd[3741357]: group added to /etc/group: name=rooter, GID=657 <86>Dec 4 18:00:24 groupadd[3741357]: group added to /etc/gshadow: name=rooter <86>Dec 4 18:00:24 groupadd[3741357]: new group: name=rooter, GID=657 <86>Dec 4 18:00:24 useradd[3741380]: new user: name=rooter, UID=657, GID=657, home=/root, shell=/bin/bash <86>Dec 4 18:00:24 userdel[3741416]: delete user 'builder' <86>Dec 4 18:00:24 userdel[3741416]: removed group 'builder' owned by 'builder' <86>Dec 4 18:00:24 userdel[3741416]: removed shadow group 'builder' owned by 'builder' <86>Dec 4 18:00:24 groupadd[3741452]: group added to /etc/group: name=builder, GID=658 <86>Dec 4 18:00:24 groupadd[3741452]: group added to /etc/gshadow: name=builder <86>Dec 4 18:00:24 groupadd[3741452]: new group: name=builder, GID=658 <86>Dec 4 18:00:24 useradd[3741482]: new user: name=builder, UID=658, GID=658, home=/usr/src, shell=/bin/bash warning: ignored self-provides: libnetcdff6-mpi = 4.4.4-alt2 warning: Macro %_altdir not found warning: Macro %_altdir not found warning: Macro %_altdir not found warning: Macro %_altdir not found warning: Macro %_altdir not found warning: Macro %_altdir not found warning: Macro %_altdir not found <13>Dec 4 18:00:27 rpmi: libnl3-3.5.0-alt1 sisyphus+237716.100.1.1 1568781468 installed <13>Dec 4 18:00:27 rpmi: libibverbs-30.0-alt3 sisyphus+255463.100.1.1 1595872681 installed <13>Dec 4 18:00:27 rpmi: libidn2-2.3.0-alt1 sisyphus+240846.100.1.2 1573870475 installed <13>Dec 4 18:00:27 rpmi: libquadmath0-10.2.1-alt2 icarus+262842.100.1.1 1606948274 installed <13>Dec 4 18:00:27 rpmi: libgfortran5-10.2.1-alt2 icarus+262842.100.1.1 1606948274 installed <13>Dec 4 18:00:27 rpmi: udev-rules-1:247-alt1 sisyphus+262610.100.3.1 1606868507 installed <13>Dec 4 18:00:27 rpmi: librdmacm-30.0-alt3 sisyphus+255463.100.1.1 1595872681 installed <13>Dec 4 18:00:27 rpmi: libnuma-2.0.14-alt2 sisyphus+262152.100.1.1 1605821057 installed <13>Dec 4 18:00:27 rpmi: libibumad-30.0-alt3 sisyphus+255463.100.1.1 1595872681 installed <13>Dec 4 18:00:27 rpmi: libmnl-1.0.4-alt2 sisyphus+220683.100.1.1 1549335457 installed <13>Dec 4 18:00:27 rpmi: gcc-fortran-common-1.4.26-alt1 icarus+262780.400.2.1 1606887104 installed <13>Dec 4 18:00:27 rpmi: liblz4-1:1.9.3-alt1 sisyphus+262305.100.1.1 1606099167 installed <13>Dec 4 18:00:27 rpmi: libiptables-1.8.6-alt1 sisyphus+262268.100.1.1 1606080661 installed <13>Dec 4 18:00:27 rpmi: msulogin-1.0-alt1 1366288515 installed <13>Dec 4 18:00:27 rpmi: mount-2.35.2-alt2 sisyphus+253892.100.2.1 1592922983 installed <13>Dec 4 18:00:27 rpmi: sysvinit-2.88-alt6 sisyphus+240403.100.2.1 1573520141 installed <13>Dec 4 18:00:27 rpmi: libnetlink-5.9.0-alt1 sisyphus+260370.100.1.1 1603619311 installed <13>Dec 4 18:00:27 rpmi: libibmad-30.0-alt3 sisyphus+255463.100.1.1 1595872681 installed <13>Dec 4 18:00:27 rpmi: libibnetdisc-30.0-alt3 sisyphus+255463.100.1.1 1595872681 installed <13>Dec 4 18:00:27 rpmi: libnuma-devel-2.0.14-alt2 sisyphus+262152.100.1.1 1605821057 installed <13>Dec 4 18:00:27 rpmi: libquadmath10-devel-10.2.1-alt2 icarus+262842.100.1.1 1606948274 installed <13>Dec 4 18:00:27 rpmi: libgfortran10-devel-10.2.1-alt2 icarus+262842.100.1.1 1606948274 installed <13>Dec 4 18:00:28 rpmi: gcc10-fortran-10.2.1-alt2 icarus+262842.100.1.1 1606948274 installed <13>Dec 4 18:00:28 rpmi: gcc-fortran-10-alt1 icarus+262780.300.2.1 1606888886 installed <13>Dec 4 18:00:28 rpmi: libquadmath8-devel-8.4.1-alt1 sisyphus+247375.200.3.1 1583429415 installed <13>Dec 4 18:00:28 rpmi: libgfortran8-devel-8.4.1-alt1 sisyphus+247375.200.3.1 1583429415 installed <13>Dec 4 18:00:28 rpmi: libsz2-2.1-alt4 1300649104 installed <13>Dec 4 18:00:28 rpmi: zlib-devel-1.2.11-alt1 sisyphus+221902.6000.4.1 1550601058 installed <13>Dec 4 18:00:28 rpmi: tcsh-6.20.00-alt2 1503603381 installed <13>Dec 4 18:00:28 rpmi: rpm-macros-mpi-selector-1.0.3-alt3 1504498675 installed <13>Dec 4 18:00:28 rpmi: mpi-selector-1.0.3-alt3 1504498675 installed <13>Dec 4 18:00:28 rpmi: openmpi-2.0.1-alt8 sisyphus+229856.100.1.1 1558540200 installed <13>Dec 4 18:00:28 rpmi: libpnetcdf-1.8.1-alt2.1 sisyphus+249301.100.1.1 1585929077 installed <13>Dec 4 18:00:28 rpmi: libpci-3.7.0-alt1 sisyphus+253474.100.1.1 1592227050 installed <13>Dec 4 18:00:28 rpmi: pciids-20201130-alt1 sisyphus+262719.100.1.1 1606777572 installed <13>Dec 4 18:00:28 rpmi: pciutils-3.7.0-alt1 sisyphus+253474.100.1.1 1592227050 installed <13>Dec 4 18:00:28 rpmi: libexpat-2.2.10-alt1 sisyphus+259966.100.1.1 1602824518 installed <13>Dec 4 18:00:28 rpmi: publicsuffix-list-dafsa-20201117-alt1 sisyphus+262026.100.1.1 1605704486 installed <13>Dec 4 18:00:28 rpmi: libpsl-0.21.1-alt1 sisyphus+255206.100.1.1 1595348938 installed <13>Dec 4 18:00:28 rpmi: libnghttp2-1.41.0-alt1 sisyphus+253680.100.1.1 1592642271 installed <13>Dec 4 18:00:28 rpmi: libverto-0.3.0-alt1_7 sisyphus+225932.100.1.1 1553994919 installed <13>Dec 4 18:00:28 rpmi: liblmdb-0.9.23-alt1 sisyphus+225277.100.2.1 1553001679 installed <13>Dec 4 18:00:28 rpmi: libkeyutils-1.6.1-alt1 sisyphus+256015.100.1.1 1596820124 installed <13>Dec 4 18:00:28 rpmi: libcom_err-1.45.6.0.24.af1a-alt1 sisyphus+262279.100.1.1 1606088229 installed <13>Dec 4 18:00:28 rpmi: libbrotlicommon-1.0.9-alt2 sisyphus+257777.100.1.1 1599688017 installed <13>Dec 4 18:00:28 rpmi: libbrotlidec-1.0.9-alt2 sisyphus+257777.100.1.1 1599688017 installed <13>Dec 4 18:00:28 rpmi: libatm-2.5.1-alt6 sisyphus+234093.100.1.1 1562575889 installed <13>Dec 4 18:00:28 rpmi: chrooted-0.3.11-alt1 sisyphus+249336.100.1.1 1585959537 installed <13>Dec 4 18:00:28 rpmi: chrooted-resolv-0.3.1-alt2 1176155250 installed <86>Dec 4 18:00:28 groupadd[3765008]: group added to /etc/group: name=iputils, GID=499 <86>Dec 4 18:00:28 groupadd[3765008]: group added to /etc/gshadow: name=iputils <86>Dec 4 18:00:28 groupadd[3765008]: new group: name=iputils, GID=499 <86>Dec 4 18:00:28 useradd[3765042]: new user: name=iputils, UID=499, GID=499, home=/dev/null, shell=/dev/null <86>Dec 4 18:00:28 groupadd[3765074]: group added to /etc/group: name=netadmin, GID=498 <86>Dec 4 18:00:28 groupadd[3765074]: group added to /etc/gshadow: name=netadmin <86>Dec 4 18:00:28 groupadd[3765074]: new group: name=netadmin, GID=498 <13>Dec 4 18:00:29 rpmi: iputils-20200821-alt3 sisyphus+262181.200.2.1 1605870780 installed sysctl: cannot stat /proc/sys/net/ipv4/ping_group_range: No such file or directory <13>Dec 4 18:00:29 rpmi: iproute2-5.9.0-alt1 sisyphus+260370.100.1.1 1603619311 installed <13>Dec 4 18:00:29 rpmi: gcc-c++-common-1.4.26-alt1 icarus+262780.400.2.1 1606887104 installed <13>Dec 4 18:00:29 rpmi: libstdc++10-devel-10.2.1-alt2 icarus+262842.100.1.1 1606948274 installed <13>Dec 4 18:00:30 rpmi: gcc10-c++-10.2.1-alt2 icarus+262842.100.1.1 1606948274 installed <13>Dec 4 18:00:30 rpmi: gcc-c++-10-alt1 icarus+262780.300.2.1 1606888886 installed <13>Dec 4 18:00:30 rpmi: libdevmapper-1.02.173-alt1 sisyphus+259861.100.1.1 1602624837 installed <13>Dec 4 18:00:30 rpmi: udev-hwdb-1:247-alt1 sisyphus+262610.100.3.1 1606868507 installed <13>Dec 4 18:00:30 rpmi: libgpg-error-1.36-alt1 sisyphus+225621.300.1.1 1553521082 installed <13>Dec 4 18:00:30 rpmi: libgcrypt20-1.8.5-alt3 sisyphus+239622.100.1.1 1571746654 installed <13>Dec 4 18:00:30 rpmi: libsystemd-1:247-alt1 sisyphus+262610.100.3.1 1606868459 installed <13>Dec 4 18:00:30 rpmi: hwclock-1:2.35.2-alt2 sisyphus+253892.100.2.1 1592922983 installed <13>Dec 4 18:00:30 rpmi: hashalot-0.3-alt1.qa1 1366323553 installed <13>Dec 4 18:00:30 rpmi: losetup-2.35.2-alt2 sisyphus+253892.100.2.1 1592922983 installed <13>Dec 4 18:00:30 rpmi: lsblk-2.35.2-alt2 sisyphus+253892.100.2.1 1592922983 installed <13>Dec 4 18:00:30 rpmi: libp11-kit-0.23.15-alt2 sisyphus+252784.100.2.2 1591274901 installed <13>Dec 4 18:00:30 rpmi: libtasn1-4.16.0-alt1 sisyphus+245480.100.1.1 1580825062 installed <13>Dec 4 18:00:30 rpmi: bc-1:1.07.1-alt1 sisyphus+221902.700.4.1 1550587857 installed <13>Dec 4 18:00:30 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Dec 4 18:00:30 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Dec 4 18:00:31 rpmi: libhdf5-8-mpi-1.8.13-alt4 sisyphus+223496.100.1.1 1551620849 installed <13>Dec 4 18:00:31 rpmi: ca-certificates-2020.10.22-alt1 sisyphus+260224.300.2.1 1603549301 installed <13>Dec 4 18:00:31 rpmi: ca-trust-0.1.2-alt1 sisyphus+233348.100.1.1 1561653823 installed <13>Dec 4 18:00:31 rpmi: p11-kit-trust-0.23.15-alt2 sisyphus+252784.100.2.2 1591274901 installed <13>Dec 4 18:00:31 rpmi: libcrypto1.1-1.1.1g-alt1 sisyphus+249982.60.8.1 1587743711 installed <13>Dec 4 18:00:31 rpmi: libkmod-27.0.9.f5434cf-alt1 sisyphus+253982.100.1.1 1593076962 installed <13>Dec 4 18:00:31 rpmi: startup-0.9.9.9-alt1 sisyphus+242122.100.1.1 1575282386 installed <13>Dec 4 18:00:31 rpmi: systemd-utils-1:247-alt1 sisyphus+262610.100.3.1 1606868459 installed <13>Dec 4 18:00:31 rpmi: libssl1.1-1.1.1g-alt1 sisyphus+249982.60.8.1 1587743711 installed <86>Dec 4 18:00:31 groupadd[3778753]: group added to /etc/group: name=_keytab, GID=497 <86>Dec 4 18:00:31 groupadd[3778753]: group added to /etc/gshadow: name=_keytab <86>Dec 4 18:00:31 groupadd[3778753]: new group: name=_keytab, GID=497 <13>Dec 4 18:00:31 rpmi: libkrb5-1.18.3-alt1 sisyphus+262109.100.1.1 1605777180 installed <13>Dec 4 18:00:31 rpmi: kmod-27.0.9.f5434cf-alt1 sisyphus+253982.100.1.1 1593076962 installed <13>Dec 4 18:00:31 rpmi: dmsetup-1.02.173-alt1 sisyphus+259861.100.1.1 1602624837 installed <86>Dec 4 18:00:31 groupadd[3780043]: group added to /etc/group: name=tape, GID=496 <86>Dec 4 18:00:31 groupadd[3780043]: group added to /etc/gshadow: name=tape <86>Dec 4 18:00:31 groupadd[3780043]: new group: name=tape, GID=496 <86>Dec 4 18:00:31 groupadd[3780083]: group added to /etc/group: name=dialout, GID=495 <86>Dec 4 18:00:31 groupadd[3780083]: group added to /etc/gshadow: name=dialout <86>Dec 4 18:00:31 groupadd[3780083]: new group: name=dialout, GID=495 <86>Dec 4 18:00:31 groupadd[3780127]: group added to /etc/group: name=input, GID=494 <86>Dec 4 18:00:31 groupadd[3780127]: group added to /etc/gshadow: name=input <86>Dec 4 18:00:31 groupadd[3780127]: new group: name=input, GID=494 <86>Dec 4 18:00:31 groupadd[3780156]: group added to /etc/group: name=video, GID=493 <86>Dec 4 18:00:31 groupadd[3780156]: group added to /etc/gshadow: name=video <86>Dec 4 18:00:31 groupadd[3780156]: new group: name=video, GID=493 <86>Dec 4 18:00:31 groupadd[3780179]: group added to /etc/group: name=render, GID=492 <86>Dec 4 18:00:31 groupadd[3780179]: group added to /etc/gshadow: name=render <86>Dec 4 18:00:31 groupadd[3780179]: new group: name=render, GID=492 <13>Dec 4 18:00:31 rpmi: udev-1:247-alt1 sisyphus+262610.100.3.1 1606868459 installed <13>Dec 4 18:00:31 rpmi: rdma-core-30.0-alt3 sisyphus+255463.100.1.1 1595872681 installed <13>Dec 4 18:00:31 rpmi: ibacm-30.0-alt3 sisyphus+255463.100.1.1 1595872681 installed <13>Dec 4 18:00:31 rpmi: rdma-core-devel-30.0-alt3 sisyphus+255463.100.1.1 1595872681 installed <13>Dec 4 18:00:31 rpmi: openmpi-devel-2.0.1-alt8 sisyphus+229856.100.1.1 1558540200 installed <13>Dec 4 18:00:32 rpmi: libhdf5-mpi-devel-1.8.13-alt4 sisyphus+223496.100.1.1 1551620849 installed <86>Dec 4 18:00:32 groupadd[3782318]: group added to /etc/group: name=sasl, GID=491 <86>Dec 4 18:00:32 groupadd[3782318]: group added to /etc/gshadow: name=sasl <86>Dec 4 18:00:32 groupadd[3782318]: new group: name=sasl, GID=491 <13>Dec 4 18:00:32 rpmi: libsasl2-3-2.1.27-alt2.1 sisyphus+255909.100.2.1 1597199456 installed <13>Dec 4 18:00:32 rpmi: libldap-2.4.54-alt1 sisyphus+260267.100.2.1 1603571517 installed <13>Dec 4 18:00:32 rpmi: libcurl-7.73.0-alt1 sisyphus+260186.100.1.1 1603294039 installed <13>Dec 4 18:00:32 rpmi: libnetcdf11-mpi-4.4.1.1-alt2 sisyphus+238557.100.1.1 1570026012 installed <13>Dec 4 18:00:32 rpmi: libnetcdf-mpi-devel-4.4.1.1-alt2 sisyphus+238557.100.1.1 1570026012 installed <13>Dec 4 18:00:32 rpmi: libcurl-devel-7.73.0-alt1 sisyphus+260186.100.1.1 1603294039 installed <13>Dec 4 18:00:32 rpmi: libexpat-devel-2.2.10-alt1 sisyphus+259966.100.1.1 1602824518 installed <13>Dec 4 18:00:32 rpmi: flex-2.6.4.0.88.9801-alt1 sisyphus+221902.2300.4.1 1550596430 installed warning: ignored self-provides: libnetcdff6-mpi = 4.4.4-alt2 Building target platforms: i586 Building for target i586 Wrote: /usr/src/in/nosrpm/libnetcdff6-mpi-4.4.4-alt2.nosrc.rpm warning: ignored self-provides: libnetcdff6-mpi = 4.4.4-alt2 Installing libnetcdff6-mpi-4.4.4-alt2.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.62540 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf libnetcdff6-mpi-4.4.4 + echo 'Source #0 (libnetcdff6-mpi-4.4.4.tar):' Source #0 (libnetcdff6-mpi-4.4.4.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/libnetcdff6-mpi-4.4.4.tar + cd libnetcdff6-mpi-4.4.4 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #1 (netcdf-fortran-4.4.4-alt-build.patch):' Patch #1 (netcdf-fortran-4.4.4-alt-build.patch): + /usr/bin/patch -p1 patching file netcdf-fortran.pc.in patching file nf-config.in + sed -i 's|@MPIDIR@|/usr/lib/openmpi|' netcdf-fortran.pc.in nf-config.in + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.62540 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd libnetcdff6-mpi-4.4.4 + mpi-selector --set openmpi + source /usr/lib/openmpi/bin/mpivars.sh ++ grep -q /usr/lib/openmpi/bin ++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ PATH=/usr/lib/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ export PATH ++ echo ++ grep -q /usr/lib/openmpi/lib ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ echo ++ grep -q /usr/lib/openmpi/man ++ MANPATH=/usr/lib/openmpi/man: ++ export MANPATH + export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib' + OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib' + autoreconf -fisv autoreconf-default: Entering directory `.' autoreconf-default: configure.ac: not using Gettext autoreconf-default: running: aclocal --force -I m4 autoreconf-default: configure.ac: tracing autoreconf-default: running: libtoolize --force --install libtoolize-default: putting auxiliary files in '.'. libtoolize-default: linking file './config.guess' libtoolize-default: linking file './config.sub' libtoolize-default: linking file './install-sh' libtoolize-default: linking file './ltmain.sh' libtoolize-default: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize-default: linking file 'm4/libtool.m4' libtoolize-default: linking file 'm4/ltoptions.m4' libtoolize-default: linking file 'm4/ltsugar.m4' libtoolize-default: linking file 'm4/ltversion.m4' libtoolize-default: linking file 'm4/lt~obsolete.m4' autoreconf-default: configure.ac: not using Intltool autoreconf-default: configure.ac: not using gtk-doc autoreconf-default: running: /usr/bin/autoconf-2.60 --force autoreconf-default: running: /usr/bin/autoheader-2.60 --force autoreconf-default: running: automake --add-missing --force-missing configure.ac:128: installing './compile' configure.ac:31: installing './missing' fortran/Makefile.am: installing './depcomp' autoreconf-default: Leaving directory `.' + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export CFLAGS + CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export CXXFLAGS + FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export FFLAGS + FCFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export FCFLAGS + '[' -n '' ']' ++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' ++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g' + ASFLAGS=' -march=i586 -mtune=generic' + export ASFLAGS + export lt_cv_deplibs_check_method=pass_all + lt_cv_deplibs_check_method=pass_all + readlink -e -- ./configure + xargs -ri dirname -- '{}' + xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n' + sort -u + xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess + ./configure --build=i586-alt-linux --host=i586-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --enable-shared --enable-static=no --bindir=/usr/lib/openmpi/bin --libdir=/usr/lib/openmpi/lib --includedir=/usr/lib/openmpi/include configure: WARNING: unrecognized options: --without-included-gettext configure: netCDF-Fortran 4.4.4 checking build system type... i586-alt-linux-gnu checking host system type... i586-alt-linux-gnu checking target system type... i586-alt-linux-gnu checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no configure: checking user options checking whether extra valgrind tests should be run... no checking whether parallel IO tests should be run... no checking whether netCDF extra tests should be run (developers only)... no checking for doxygen... no configure: WARNING: Doxygen not found - documentation will not be built checking for dot... no configure: WARNING: dot not found - will use simple charts in documentation configure: finding C compiler checking for i586-alt-linux-gcc... i586-alt-linux-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether i586-alt-linux-gcc accepts -g... yes checking for i586-alt-linux-gcc option to accept ISO C89... none needed checking whether i586-alt-linux-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of i586-alt-linux-gcc... none checking for an ANSI C-conforming const... yes configure: finding Fortran compiler checking for i586-alt-linux-gfortran... i586-alt-linux-gfortran checking whether we are using the GNU Fortran compiler... yes checking whether i586-alt-linux-gfortran accepts -g... yes checking for i586-alt-linux-i586-alt-linux-gfortran... no checking for i586-alt-linux-gfortran... i586-alt-linux-gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether i586-alt-linux-gfortran accepts -g... yes checking whether Fortran compiler is checked for ISO_C_BINDING support... yes checking for Fortran flag to compile .f90 files... none checking fortran 90 modules inclusion flag... -I checking if Fortran compiler supports Fortran 2003 ISO_C_BINDING... yes checking if Fortran compiler supports Fortran 2008 ISO_FORTRAN_ENV additions... yes checking if Fortran compiler supports TS29113 standard extension... yes checking whether F03 native code is desired... yes checking whether fortran type sizes should be checked... yes checking whether large file (> 2GB) tests should be run... no checking whether benchmarks should be run (experimental)... no checking where to put large temp files if large file tests are run... . configure: setting up libtool checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by i586-alt-linux-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i586-alt-linux-gnu file names to i586-alt-linux-gnu format... func_convert_file_noop checking how to convert i586-alt-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for i586-alt-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... (cached) pass_all checking for i586-alt-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i586-alt-linux-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for i586-alt-linux-strip... no checking for strip... strip checking for i586-alt-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from i586-alt-linux-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for i586-alt-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... i586-alt-linux-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if i586-alt-linux-gcc supports -fno-rtti -fno-exceptions... no checking for i586-alt-linux-gcc option to produce PIC... -fPIC -DPIC checking if i586-alt-linux-gcc PIC flag -fPIC -DPIC works... yes checking if i586-alt-linux-gcc static flag -static works... no checking if i586-alt-linux-gcc supports -c -o file.o... yes checking if i586-alt-linux-gcc supports -c -o file.o... (cached) yes checking whether the i586-alt-linux-gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for i586-alt-linux-gfortran option to produce PIC... -fPIC checking if i586-alt-linux-gfortran PIC flag -fPIC works... yes checking if i586-alt-linux-gfortran static flag -static works... no checking if i586-alt-linux-gfortran supports -c -o file.o... yes checking if i586-alt-linux-gfortran supports -c -o file.o... (cached) yes checking whether the i586-alt-linux-gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for i586-alt-linux-gfortran option to produce PIC... -fPIC checking if i586-alt-linux-gfortran PIC flag -fPIC works... yes checking if i586-alt-linux-gfortran static flag -static works... no checking if i586-alt-linux-gfortran supports -c -o file.o... yes checking if i586-alt-linux-gfortran supports -c -o file.o... (cached) yes checking whether the i586-alt-linux-gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: finding other utilities configure: trying to set fortran flags for this platform checking what FC is set to... i586-alt-linux-gfortran checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for /usr/bin/nm... /usr/bin/nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "byte"... yes checking for Fortran "integer*2"... yes checking if Fortran "byte" is C "signed char"... yes checking if Fortran "byte" is C "short"... no checking if Fortran "byte" is C "int"... no checking if Fortran "byte" is C "long"... no checking if Fortran "integer*2" is C "short"... yes checking if Fortran "integer*2" is C "int"... no checking if Fortran "integer*2" is C "long"... no checking if Fortran "integer" is C "int"... yes checking if Fortran "real" is C "float"... yes checking if Fortran "doubleprecision" is C "double"... yes checking for Fortran-equivalent to netCDF "byte"... byte checking for Fortran-equivalent to netCDF "short"... integer*2 checking whether extra example tests should be run... no checking whether a win32 DLL is desired... no configure: checking types, headers, and functions checking netcdf.h usability... yes checking netcdf.h presence... no configure: WARNING: netcdf.h: accepted by the compiler, rejected by the preprocessor! configure: WARNING: netcdf.h: proceeding with the compiler's result checking for netcdf.h... yes checking for library containing nc_open... -lnetcdf checking for nc_def_opaque... yes checking for nccreate... yes checking for nc_set_log_level... no checking for oc_open... yes checking for nc_use_parallel_enabled... yes checking netCDF v2 API present... yes checking netCDF-4 present... yes checking for stdlib.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/stat.h... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking whether time.h and sys/time.h may both be included... yes checking for vprintf... yes checking for _doprnt... no checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for size_t... (cached) yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for uchar... no checking for longlong... no checking whether char is unsigned... no checking size of short... 2 checking size of int... 4 checking size of long... 4 checking size of float... 4 checking size of double... 8 checking size of off_t... 8 checking size of size_t... 4 checking size of ptrdiff_t... 4 configure: generating header files and makefiles checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating nf-config config.status: creating netcdf-fortran.pc config.status: creating docs/Makefile config.status: creating libsrc/Makefile config.status: creating fortran/Makefile config.status: creating nf_test/Makefile config.status: creating nf03_test/Makefile config.status: creating CMakeExtras/Makefile config.status: creating examples/Makefile config.status: creating examples/F90/Makefile config.status: creating examples/F77/Makefile config.status: creating config.h config.status: creating libsrc/nfconfig1.inc config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --without-included-gettext + make -j8 make all-recursive Making all in fortran make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' i586-alt-linux-gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o module_netcdf_nc_data.o module_netcdf_nc_data.F90 make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' i586-alt-linux-gfortran -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o module_netcdf_nc_interfaces.o module_netcdf_nc_interfaces.f90 make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' i586-alt-linux-gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o module_netcdf_nf_data.o module_netcdf_nf_data.F90 make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' i586-alt-linux-gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o module_netcdf_nf_interfaces.o module_netcdf_nf_interfaces.F90 make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' i586-alt-linux-gfortran -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o module_netcdf_f03.o module_netcdf_f03.f90 make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' i586-alt-linux-gfortran -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o module_netcdf_fortv2_c_interfaces.o module_netcdf_fortv2_c_interfaces.f90 make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' i586-alt-linux-gfortran -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o module_netcdf4_nc_interfaces.o module_netcdf4_nc_interfaces.f90 make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' i586-alt-linux-gfortran -DHAVE_CONFIG_H -I. -I.. -I../libsrc -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o module_netcdf4_nf_interfaces.o module_netcdf4_nf_interfaces.F90 make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' i586-alt-linux-gfortran -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o module_netcdf4_f03.o module_netcdf4_f03.f90 make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' i586-alt-linux-gfortran -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o typeSizes.o typeSizes.f90 make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' i586-alt-linux-gfortran -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o netcdf4.o netcdf4.f90 netcdf4_func.f90:84:27: 84 | preemption_out = cache_preemption | 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] netcdf4_func.f90:39:27: 39 | preemption_out = cache_preemption | 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] netcdf_text_variables.f90:60:93: 60 | localMap (:numDims ) = (/ 1, (product(localCount(:counter)), counter = 1, numDims - 1) /) | 1 Warning: DO loop at (1) will be executed zero times [-Wzerotrip] netcdf_attributes.f90:221:17: 221 | valuesA(1) = values | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] netcdf4_file.f90:49:25: 49 | preemption_out = cache_preemption | 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] netcdf4_func.f90:708:75: 708 | nf90_inq_var_fill_FourByteReal = nf_inq_var_fill(ncid, varid, no_fill, fill) | 1 ...... 718 | nf90_inq_var_fill_EightByteReal = nf_inq_var_fill(ncid, varid, no_fill, fill) | 2 Error: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)). netcdf4_func.f90:698:75: 698 | nf90_inq_var_fill_EightByteInt = nf_inq_var_fill(ncid, varid, no_fill, fill) | 1 ...... 718 | nf90_inq_var_fill_EightByteReal = nf_inq_var_fill(ncid, varid, no_fill, fill) | 2 Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/REAL(8)). netcdf4_func.f90:688:74: 688 | nf90_inq_var_fill_FourByteInt = nf_inq_var_fill(ncid, varid, no_fill, fill) | 1 ...... 718 | nf90_inq_var_fill_EightByteReal = nf_inq_var_fill(ncid, varid, no_fill, fill) | 2 Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/REAL(8)). netcdf4_func.f90:678:73: 678 | nf90_inq_var_fill_TwoByteInt = nf_inq_var_fill(ncid, varid, no_fill, fill) | 1 ...... 718 | nf90_inq_var_fill_EightByteReal = nf_inq_var_fill(ncid, varid, no_fill, fill) | 2 Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(2)/REAL(8)). netcdf4_func.f90:668:73: 668 | nf90_inq_var_fill_OneByteInt = nf_inq_var_fill(ncid, varid, no_fill, fill) | 1 ...... 718 | nf90_inq_var_fill_EightByteReal = nf_inq_var_fill(ncid, varid, no_fill, fill) | 2 Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(1)/REAL(8)). netcdf4_func.f90:648:75: 648 | nf90_def_var_fill_FourByteReal = nf_def_var_fill(ncid, varid, no_fill, fill) | 1 ...... 658 | nf90_def_var_fill_EightByteReal = nf_def_var_fill(ncid, varid, no_fill, fill) | 2 Error: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)). netcdf4_func.f90:638:75: 638 | nf90_def_var_fill_EightByteInt = nf_def_var_fill(ncid, varid, no_fill, fill) | 1 ...... 658 | nf90_def_var_fill_EightByteReal = nf_def_var_fill(ncid, varid, no_fill, fill) | 2 Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/REAL(8)). netcdf4_func.f90:628:74: 628 | nf90_def_var_fill_FourByteInt = nf_def_var_fill(ncid, varid, no_fill, fill) | 1 ...... 658 | nf90_def_var_fill_EightByteReal = nf_def_var_fill(ncid, varid, no_fill, fill) | 2 Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/REAL(8)). netcdf4_func.f90:618:73: 618 | nf90_def_var_fill_TwoByteInt = nf_def_var_fill(ncid, varid, no_fill, fill) | 1 ...... 658 | nf90_def_var_fill_EightByteReal = nf_def_var_fill(ncid, varid, no_fill, fill) | 2 Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(2)/REAL(8)). netcdf4_func.f90:608:73: 608 | nf90_def_var_fill_OneByteInt = nf_def_var_fill(ncid, varid, no_fill, fill) | 1 ...... 658 | nf90_def_var_fill_EightByteReal = nf_def_var_fill(ncid, varid, no_fill, fill) | 2 Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(1)/REAL(8)). make[2]: *** [Makefile:630: netcdf4.o] Error 1 make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdff6-mpi-4.4.4/fortran' make[1]: *** [Makefile:546: all-recursive] Error 1 make: *** [Makefile:418: all] Error 2 error: Bad exit status from /usr/src/tmp/rpm-tmp.62540 (%build) RPM build errors: ignored self-provides: libnetcdff6-mpi = 4.4.4-alt2 Bad exit status from /usr/src/tmp/rpm-tmp.62540 (%build) Command exited with non-zero status 1 24.14user 7.06system 0:30.87elapsed 101%CPU (0avgtext+0avgdata 23668maxresident)k 0inputs+0outputs (0major+1159664minor)pagefaults 0swaps hsh-rebuild: rebuild of `libnetcdff6-mpi-4.4.4-alt2.src.rpm' failed. Command exited with non-zero status 1 34.44user 10.84system 0:45.50elapsed 99%CPU (0avgtext+0avgdata 109300maxresident)k 1600inputs+0outputs (0major+1580899minor)pagefaults 0swaps