<86>Dec 25 04:38:54 userdel[1175116]: delete user 'rooter' <86>Dec 25 04:38:54 userdel[1175116]: removed group 'rooter' owned by 'rooter' <86>Dec 25 04:38:54 userdel[1175116]: removed shadow group 'rooter' owned by 'rooter' <86>Dec 25 04:38:54 groupadd[1175130]: group added to /etc/group: name=rooter, GID=1214 <86>Dec 25 04:38:54 groupadd[1175130]: group added to /etc/gshadow: name=rooter <86>Dec 25 04:38:54 groupadd[1175130]: new group: name=rooter, GID=1214 <86>Dec 25 04:38:54 useradd[1175141]: new user: name=rooter, UID=1214, GID=1214, home=/root, shell=/bin/bash, from=none <86>Dec 25 04:38:54 userdel[1175155]: delete user 'builder' <86>Dec 25 04:38:54 userdel[1175155]: removed group 'builder' owned by 'builder' <86>Dec 25 04:38:54 groupadd[1175170]: group added to /etc/group: name=builder, GID=1215 <86>Dec 25 04:38:54 groupadd[1175170]: group added to /etc/gshadow: name=builder <86>Dec 25 04:38:54 groupadd[1175170]: new group: name=builder, GID=1215 <86>Dec 25 04:38:54 useradd[1175183]: new user: name=builder, UID=1215, GID=1215, home=/usr/src, shell=/bin/bash, from=none warning: Macro %cmake not found warning: Macro %cmake_build not found warning: Macro %cmake_install not found <13>Dec 25 04:39:04 rpmi: libjpeg-2:3.0.2-alt2.1 sisyphus+340135.100.1.1 1707449145 installed <13>Dec 25 04:39:04 rpmi: libpng16-1.6.42-alt2 sisyphus+339555.100.1.1 1706781682 installed <13>Dec 25 04:39:04 rpmi: libwayland-client-1.23.1-alt1.1 sisyphus+356019.140.3.1 1724572111 installed <13>Dec 25 04:39:04 rpmi: libexpat-2.6.4-alt1 sisyphus+365521.100.1.1 1734700243 installed <13>Dec 25 04:39:04 rpmi: libgomp1-14.2.1-alt1 sisyphus+360995.100.1.1 1730131018 installed <13>Dec 25 04:39:04 rpmi: libogg-1.3.5-alt1 sisyphus+278100.3400.1.1 1626058929 installed <13>Dec 25 04:39:04 rpmi: libvorbis-1.3.7-alt1 sisyphus+275738.100.1.1 1624751601 installed <13>Dec 25 04:39:04 rpmi: libraw1394-11-2.1.2-alt1 sisyphus+278262.100.1.1 1626081867 installed <13>Dec 25 04:39:04 rpmi: libgudev-1:238-alt1 sisyphus+324364.100.1.1 1688646144 installed <13>Dec 25 04:39:04 rpmi: liblcms2-2.16-alt1 sisyphus+335676.100.1.1 1701682597 installed <13>Dec 25 04:39:04 rpmi: libwebp7-1.5.0-alt1 sisyphus+365488.100.1.1 1734677703 installed <13>Dec 25 04:39:04 rpmi: libopus-1.5.2-alt1.1 sisyphus+366209.100.1.1 1734786371 installed <13>Dec 25 04:39:04 rpmi: libboost_system1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:04 rpmi: libsuitesparseconfig7-7.7.0-alt2 sisyphus+348694.100.1.1 1716437881 installed <13>Dec 25 04:39:04 rpmi: libusb-1.0.27-alt1 sisyphus+347412.100.1.1 1714739651 installed <13>Dec 25 04:39:05 rpmi: libicu74-1:7.4.2-alt1 sisyphus+336372.200.1.1 1702423005 installed <13>Dec 25 04:39:05 rpmi: xorg-proto-devel-2024.1-alt1 sisyphus+343583.40.1.1 1711440649 installed <13>Dec 25 04:39:05 rpmi: libtheora-2:1.1.1-alt6 sisyphus+277967.100.1.1 1625928129 installed <13>Dec 25 04:39:05 rpmi: libwayland-egl-4:18.1.0-alt1.1 sisyphus+356019.140.3.1 1724572111 installed <13>Dec 25 04:39:05 rpmi: libhyphen-2.8.8-alt1 sisyphus+278186.100.1.1 1626075927 installed <13>Dec 25 04:39:05 rpmi: libopenblas-0.3.28-alt1 sisyphus+356644.100.1.1 1725289674 installed <13>Dec 25 04:39:05 rpmi: libsqlite3-3.47.1-alt1 sisyphus+365248.200.3.1 1734527620 installed <13>Dec 25 04:39:05 rpmi: perl-HTTP-Date-6.06-alt1 sisyphus+324527.100.1.1 1688834564 installed <13>Dec 25 04:39:05 rpmi: perl-XML-NamespaceSupport-1.12-alt1 1491296348 installed <13>Dec 25 04:39:05 rpmi: libSDL2-2.30.10-alt1 sisyphus+364560.100.1.1 1733772087 installed <13>Dec 25 04:39:05 rpmi: liborc-0.4.40-alt1 sisyphus+357575.100.1.1 1726413203 installed <13>Dec 25 04:39:05 rpmi: libserd-0.32.2-alt1 sisyphus+341428.200.1.1 1708949158 installed <13>Dec 25 04:39:05 rpmi: libvpl2-2.13.0-alt1 sisyphus+357848.100.2.1 1726737480 installed <13>Dec 25 04:39:05 rpmi: libwayland-server-1.23.1-alt1.1 sisyphus+356019.140.3.1 1724572111 installed <13>Dec 25 04:39:06 rpmi: libspirv-tools0-1:2024.4-alt0.1 sisyphus+365035.200.5.1 1734354502 installed <13>Dec 25 04:39:06 rpmi: libspeex-1.2.1-alt1 sisyphus+339763.100.1.1 1707113839 installed <13>Dec 25 04:39:06 rpmi: libfribidi-1.0.16-alt1 sisyphus+358393.100.1.1 1727333692 installed <13>Dec 25 04:39:06 rpmi: liblame-3.100-alt1 sisyphus+346342.200.2.2 1716474674 installed <13>Dec 25 04:39:06 rpmi: libgsm-1.0.17-alt1 sisyphus+275359.100.2.1 1624907612 installed <13>Dec 25 04:39:06 rpmi: libdav1d_7-1.5.0-alt1 sisyphus+365203.100.1.1 1734367592 installed <13>Dec 25 04:39:06 rpmi: libopenjpeg2.0-2.5.3-alt1 sisyphus+364601.100.1.1 1733825032 installed <13>Dec 25 04:39:06 rpmi: libidn2-2.3.7-alt1 sisyphus+339505.100.1.2 1706718968 installed <13>Dec 25 04:39:06 rpmi: libnettle8-3.9.1-alt1 sisyphus+322548.100.1.2 1686176879 installed <13>Dec 25 04:39:06 rpmi: libquadmath0-14.2.1-alt1 sisyphus+360995.100.1.1 1730131018 installed <13>Dec 25 04:39:06 rpmi: libtasn1-4.19.0-alt3 sisyphus+327816.100.1.1 1692802615 installed <13>Dec 25 04:39:06 rpmi: libatk-2.54.0-alt1 sisyphus+357735.600.3.1 1726642126 installed <13>Dec 25 04:39:06 rpmi: libgfortran5-14.2.1-alt1 sisyphus+360995.100.1.1 1730131018 installed <13>Dec 25 04:39:06 rpmi: libdc1394-22-2.2.5-alt1.1 sisyphus+311484.100.1.1 1670647146 installed <13>Dec 25 04:39:06 rpmi: libiec61883-1.2.0-alt1.qa1 sisyphus+275365.100.1.2 1624491850 installed <13>Dec 25 04:39:06 rpmi: libflac12-1.4.3-alt2 sisyphus+343354.100.1.1 1711118098 installed <13>Dec 25 04:39:06 rpmi: libwayland-cursor-1.23.1-alt1.1 sisyphus+356019.140.3.1 1724572111 installed <13>Dec 25 04:39:06 rpmi: libv4l-1.28.1-alt1 sisyphus+353586.100.1.1 1721897959 installed <13>Dec 25 04:39:06 rpmi: libncurses6-6.3.20220618-alt4 sisyphus+327286.4600.14.1 1711486705 installed <13>Dec 25 04:39:06 rpmi: libgflags-2.2.2-alt3 sisyphus+319790.100.1.1 1683117277 installed <13>Dec 25 04:39:06 rpmi: libdv-1.0.0-alt6 sisyphus+286805.100.2.1 1633968015 installed <13>Dec 25 04:39:06 rpmi: libxslt-1.1.39-alt1 sisyphus+349406.100.1.1 1716751806 installed <13>Dec 25 04:39:06 rpmi: libepoxy-1.5.10-alt1 sisyphus+296853.200.2.1 1647631866 installed <13>Dec 25 04:39:06 rpmi: perl-LWP-MediaTypes-6.04-alt1 sisyphus+225468.100.1.1 1553186684 installed <13>Dec 25 04:39:06 rpmi: perl-Compress-Raw-Zlib-2.206-alt1 sisyphus+335067.600.1.1 1700901499 installed <13>Dec 25 04:39:06 rpmi: perl-libnet-1:3.15-alt1 sisyphus+317310.100.1.1 1679580208 installed <13>Dec 25 04:39:06 rpmi: perl-XML-SAX-Base-1.09-alt1 1494364363 installed <13>Dec 25 04:39:06 rpmi: libwebrtc-audio-processing-1.3-alt2 sisyphus+332026.100.1.1 1697579361 installed <13>Dec 25 04:39:06 rpmi: libsbc1-2.0-alt2 sisyphus+322708.100.1.1 1686327806 installed <13>Dec 25 04:39:06 rpmi: liblc3-1.1.1-alt1 sisyphus+347780.100.1.1 1715374023 installed <13>Dec 25 04:39:06 rpmi: libfreeaptx-0.1.1-alt1 sisyphus+282022.100.1.1 1628182661 installed <13>Dec 25 04:39:06 rpmi: libfdk-aac2-2.0.3-alt0.1 sisyphus+338863.100.1.1 1706094241 installed <13>Dec 25 04:39:06 rpmi: libdvdread8-6.1.3-alt1 sisyphus+302642.100.1.1 1656163148 installed <13>Dec 25 04:39:06 rpmi: libimath29-3.1.6-alt4 sisyphus+360827.100.1.1 1729946609 installed <13>Dec 25 04:39:06 rpmi: libiex30-3.1.5-alt2.2 sisyphus+324124.100.1.1 1688379858 installed <13>Dec 25 04:39:06 rpmi: libzeromq-4.3.4-alt3 sisyphus+326735.200.2.1 1691482840 installed <13>Dec 25 04:39:06 rpmi: libmpg123-1:1.32.10-alt1 sisyphus+365072.100.1.1 1734226035 installed <13>Dec 25 04:39:06 rpmi: libsndfile-1.1.0-alt1 sisyphus+339776.7300.6.2 1707350065 installed <13>Dec 25 04:39:06 rpmi: libunwind-1.7.0-alt2 sisyphus+335269.100.1.1 1701110934 installed <13>Dec 25 04:39:06 rpmi: libglog2-0.7.1-alt1 sisyphus+350246.140.8.1 1724736246 installed <13>Dec 25 04:39:06 rpmi: libzix-0.4.2-alt1 sisyphus+341428.100.1.1 1708949131 installed <13>Dec 25 04:39:06 rpmi: libsord-0.16.16-alt1 sisyphus+341428.300.1.1 1708949185 installed <13>Dec 25 04:39:06 rpmi: libbs2b-3.1.0-alt1.4 sisyphus+346078.200.2.1 1716241402 installed <13>Dec 25 04:39:06 rpmi: libvpx9-1.14.1-alt1 sisyphus+351742.40.3.1 1719836000 installed <13>Dec 25 04:39:06 rpmi: libglvnd-7:1.7.0-alt1 sisyphus+330949.100.1.1 1696424893 installed <13>Dec 25 04:39:06 rpmi: libtwolame-0.4.0-alt1 sisyphus+277783.100.1.1 1625798476 installed <13>Dec 25 04:39:06 rpmi: libopenh264_7-2.5.0-alt1 sisyphus+362019.100.1.1 1731073174 installed <13>Dec 25 04:39:06 rpmi: libaom3-3.9.1-alt2 sisyphus+354446.100.1.1 1722877371 installed <13>Dec 25 04:39:06 rpmi: libgraphite2-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605111 installed <13>Dec 25 04:39:06 rpmi: zlib-devel-1.3.1-alt1 sisyphus+342532.100.1.1 1710232285 installed <13>Dec 25 04:39:06 rpmi: libgdbm-1.8.3-alt10 sisyphus+346222.200.3.2 1716468404 installed <13>Dec 25 04:39:06 rpmi: xml-utils-1:2.12.9-alt1 sisyphus+355784.100.1.1 1724333686 installed <13>Dec 25 04:39:07 rpmi: libbrotlicommon-1.1.0-alt1 sisyphus+328501.100.1.1 1693598419 installed <13>Dec 25 04:39:07 rpmi: libbrotlidec-1.1.0-alt1 sisyphus+328501.100.1.1 1693598419 installed <13>Dec 25 04:39:07 rpmi: libharfbuzz-10.1.0-alt1 sisyphus+361773.100.1.1 1730824042 installed <13>Dec 25 04:39:07 rpmi: libfreetype-2.13.3-alt1 sisyphus+355656.100.1.1 1724221064 installed <13>Dec 25 04:39:07 rpmi: libfontconfig1-2.15.0-alt1 sisyphus+355771.100.2.3 1724337298 installed <13>Dec 25 04:39:07 rpmi: libass9-0.17.3-alt1 sisyphus+352066.100.1.1 1720008822 installed <13>Dec 25 04:39:07 rpmi: libharfbuzz-icu-10.1.0-alt1 sisyphus+361773.100.1.1 1730824042 installed <13>Dec 25 04:39:07 rpmi: libbrotlienc-1.1.0-alt1 sisyphus+328501.100.1.1 1693598419 installed <13>Dec 25 04:39:07 rpmi: libp11-kit-1:0.25.5-alt1 sisyphus+352553.100.1.1 1720622573 installed <13>Dec 25 04:39:07 rpmi: libXau-1.0.11-alt1 sisyphus+311428.100.1.1 1670577439 installed <13>Dec 25 04:39:07 rpmi: libXau-devel-1.0.11-alt1 sisyphus+311428.100.1.1 1670577439 installed <13>Dec 25 04:39:07 rpmi: libwoff2-1.0.2-alt3 sisyphus+302729.100.1.1 1656351540 installed <13>Dec 25 04:39:07 rpmi: fontconfig-2.15.0-alt1 sisyphus+355771.100.2.3 1724337298 installed Updating fonts cache: <29>Dec 25 04:39:08 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Dec 25 04:39:08 rpmi: libharfbuzz-gobject-10.1.0-alt1 sisyphus+361773.100.1.1 1730824042 installed <13>Dec 25 04:39:08 rpmi: rpm-build-gir-0.7.3-alt3.1 sisyphus+319393.100.1.1 1682538783 installed <13>Dec 25 04:39:08 rpmi: libgdbm-devel-1.8.3-alt10 sisyphus+346222.200.3.2 1716468404 installed <13>Dec 25 04:39:08 rpmi: perl-devel-1:5.38.2-alt0.2 sisyphus+344512.40.2.1 1712358015 installed <13>Dec 25 04:39:08 rpmi: swig-data-1:4.1.1-alt8 sisyphus+339194.200.2.1 1706442289 installed <13>Dec 25 04:39:08 rpmi: libpng-devel-1.6.42-alt2 sisyphus+339555.100.1.1 1706781682 installed <13>Dec 25 04:39:08 rpmi: libgraphite2-devel-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605111 installed <13>Dec 25 04:39:08 rpmi: libsratom-0.6.16-alt1 sisyphus+341428.400.1.1 1708949212 installed <13>Dec 25 04:39:08 rpmi: liblilv-0.24.24-alt2 sisyphus+341494.100.1.1 1709024102 installed <13>Dec 25 04:39:08 rpmi: libsamplerate-0.2.2-alt1 sisyphus+284642.100.1.1 1630906301 installed <13>Dec 25 04:39:08 rpmi: libinstpatch-1.1.6-alt1.1 sisyphus+279572.100.1.2 1626605094 installed <13>Dec 25 04:39:08 rpmi: libilmthread30-3.1.5-alt2.2 sisyphus+324124.100.1.1 1688379858 installed <13>Dec 25 04:39:08 rpmi: libopenexr30-3.1.5-alt2.2 sisyphus+324124.100.1.1 1688379858 installed <13>Dec 25 04:39:08 rpmi: libdvdnav-6.1.1-alt1 sisyphus+279367.100.1.1 1626478896 installed <13>Dec 25 04:39:08 rpmi: libquadmath14-devel-14.2.1-alt1 sisyphus+360995.100.1.1 1730131018 installed <13>Dec 25 04:39:08 rpmi: libquadmath-devel-14-alt1 sisyphus+360995.300.1.1 1730139222 installed <13>Dec 25 04:39:08 rpmi: libboost_charconv1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:08 rpmi: libhogweed6-3.9.1-alt1 sisyphus+322548.100.1.2 1686176879 installed <13>Dec 25 04:39:08 rpmi: libgnutls30-3.8.8-alt2 sisyphus+364832.100.1.1 1734007749 installed <13>Dec 25 04:39:08 rpmi: libngtcp2.16-1.10.0-alt1 sisyphus+366376.200.1.1 1735020753 installed <13>Dec 25 04:39:08 rpmi: libngtcp2_crypto_gnutls8-1.10.0-alt1 sisyphus+366376.200.1.1 1735020753 installed <13>Dec 25 04:39:08 rpmi: libglslang15-1:15.0.0-alt1 sisyphus+365035.300.5.1 1734354607 installed <13>Dec 25 04:39:08 rpmi: libshaderc1-2024.3-alt0.1 sisyphus+365035.1100.5.1 1734355040 installed <13>Dec 25 04:39:08 rpmi: perl-File-Listing-6.16-alt1 sisyphus+325783.100.1.1 1690559356 installed <13>Dec 25 04:39:08 rpmi: hyphen-en-2.8.8-alt1 sisyphus+278186.100.1.1 1626075927 installed <13>Dec 25 04:39:08 rpmi: hyphen-ru-20020727-alt3 sisyphus+276848.100.1.1 1625243550 installed <13>Dec 25 04:39:08 rpmi: icu-utils-1:7.4.2-alt1 sisyphus+336372.200.1.1 1702423005 installed <13>Dec 25 04:39:08 rpmi: libicu-devel-1:7.4.2-alt1 sisyphus+336372.200.1.1 1702423005 installed <13>Dec 25 04:39:08 rpmi: libamd3-7.7.0-alt2 sisyphus+348694.100.1.1 1716437881 installed <13>Dec 25 04:39:08 rpmi: libcamd3-7.7.0-alt2 sisyphus+348694.100.1.1 1716437881 installed <13>Dec 25 04:39:08 rpmi: libcolamd3-7.7.0-alt2 sisyphus+348694.100.1.1 1716437881 installed <13>Dec 25 04:39:08 rpmi: libccolamd3-7.7.0-alt2 sisyphus+348694.100.1.1 1716437881 installed <13>Dec 25 04:39:08 rpmi: libboost_atomic1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:08 rpmi: libboost_contract1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:08 rpmi: libboost_filesystem1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:08 rpmi: libboost_process1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:08 rpmi: libboost_chrono1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:08 rpmi: libboost_timer1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:08 rpmi: libboost_thread1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:08 rpmi: libboost_type_erasure1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:08 rpmi: libavc1394-0.5.4-alt2 sisyphus+284572.100.1.1 1630712939 installed <13>Dec 25 04:39:08 rpmi: libvidstab-1.1.0-alt2.1 sisyphus+279558.100.1.2 1626596087 installed <13>Dec 25 04:39:08 rpmi: libsoundtouch-2.3.3-alt1 sisyphus+344043.100.1.1 1711799526 installed <13>Dec 25 04:39:08 rpmi: libyuv-0.0.1874-alt1 sisyphus+326054.40.2.1 1690679392 installed <13>Dec 25 04:39:08 rpmi: libvoikko-4.3.2-alt1_3 sisyphus+328233.100.1.1 1693337992 installed <13>Dec 25 04:39:09 rpmi: voikko-fi-2.5-alt1_3 sisyphus+312416.100.1.1 1671876516 installed <13>Dec 25 04:39:09 rpmi: sysctl-conf-userns-0.2-alt1 sisyphus+290639.100.1.1 1637937968 installed <13>Dec 25 04:39:09 rpmi: bubblewrap-0.11.0-alt1 sisyphus+361246.100.1.1 1730360219 installed <13>Dec 25 04:39:09 rpmi: libtinfo-devel-6.3.20220618-alt4 sisyphus+327286.4600.14.1 1711486705 installed <13>Dec 25 04:39:09 rpmi: libncurses-devel-6.3.20220618-alt4 sisyphus+327286.4600.14.1 1711486705 installed <13>Dec 25 04:39:09 rpmi: libmspack-1.11-alt1 sisyphus+319133.100.1.1 1682243802 installed <13>Dec 25 04:39:09 rpmi: libevdev-1.13.3-alt1 sisyphus+356918.100.1.1 1725546440 installed <13>Dec 25 04:39:09 rpmi: libhunspell-1.7.2-alt1 sisyphus+346301.200.2.1 1716443379 installed <13>Dec 25 04:39:09 rpmi: libbacktrace-1.0-alt0.3.gcdb64b6 sisyphus+324404.100.1.1 1688722838 installed <13>Dec 25 04:39:09 rpmi: librav1e-0.7.1-alt1 sisyphus+338722.100.1.1 1706001596 installed <13>Dec 25 04:39:09 rpmi: libavif-1.1.1-alt1 sisyphus+356778.100.1.1 1725438291 installed <13>Dec 25 04:39:09 rpmi: libaspell-0.60.8-alt2 sisyphus+360710.100.1.1 1729861573 installed <13>Dec 25 04:39:09 rpmi: libenchant2-1:2.8.2-alt1 sisyphus+355237.100.1.1 1723731984 installed <13>Dec 25 04:39:09 rpmi: libICE-1.1.1-alt1 sisyphus+311428.500.1.1 1670577555 installed <13>Dec 25 04:39:09 rpmi: libSM-1.2.4-alt1 sisyphus+312057.200.1.1 1671526916 installed <13>Dec 25 04:39:09 rpmi: highway-libs-1.2.0-alt1 sisyphus+350172.100.1.1 1717270054 installed <13>Dec 25 04:39:09 rpmi: libwavpack-5.7.0-alt1 sisyphus+342915.100.1.1 1710636743 installed <13>Dec 25 04:39:09 rpmi: libtag-1.12-alt1 sisyphus+277260.100.1.1 1625423537 installed <13>Dec 25 04:39:09 rpmi: libpcre3-8.45-alt2 sisyphus+283722.100.1.2 1629848198 installed <13>Dec 25 04:39:09 rpmi: libslang2-2.3.3-alt1 sisyphus+314492.100.1.1 1675240386 installed <13>Dec 25 04:39:09 rpmi: libvisual0.4-0.4.0-alt3 sisyphus+276250.100.1.2 1624927462 installed <13>Dec 25 04:39:09 rpmi: libgraphene-1.10.8-alt1 sisyphus+296855.100.1.1 1647633383 installed <13>Dec 25 04:39:09 rpmi: libcdparanoia-1:10.2-alt6 sisyphus+346090.200.2.1 1716245892 installed <13>Dec 25 04:39:09 rpmi: libvo-amrwbenc-0.1.3-alt1 sisyphus+275410.100.1.2 1624504610 installed <13>Dec 25 04:39:09 rpmi: libvo-aacenc-0.1.3-alt2 sisyphus+285812.100.1.1 1632410909 installed <13>Dec 25 04:39:09 rpmi: libsrtp2-2.6.0-alt1 sisyphus+341594.100.1.1 1709111211 installed <13>Dec 25 04:39:09 rpmi: libtbb-2021.13.0-alt1 sisyphus+351726.100.1.1 1719561727 installed <13>Dec 25 04:39:09 rpmi: libprotobuf32-3.21.12-alt5 sisyphus+353063.24400.30.1 1723234273 installed <13>Dec 25 04:39:09 rpmi: libxblas-1.0.248-alt2 sisyphus+285045.40.2.1 1631388330 installed <13>Dec 25 04:39:09 rpmi: liblapack-1:3.8.0-alt7 sisyphus+340675.300.1.1 1707908338 installed <13>Dec 25 04:39:09 rpmi: libcholmod5-7.7.0-alt2 sisyphus+348694.100.1.1 1716437881 installed <13>Dec 25 04:39:09 rpmi: libspqr4-7.7.0-alt2 sisyphus+348694.100.1.1 1716437881 installed <13>Dec 25 04:39:10 rpmi: libopenal1-1.22.2-alt2 sisyphus+331513.100.1.2 1697028598 installed <13>Dec 25 04:39:10 rpmi: libmodplug-0.8.9.0-alt1 sisyphus+275375.100.2.2 1624495419 installed <13>Dec 25 04:39:10 rpmi: libyajl-2.1.0-alt3 sisyphus+322972.100.1.1 1686724493 installed <13>Dec 25 04:39:10 rpmi: libxkbcommon-1.7.0-alt1.1 sisyphus+343672.100.1.1 1711490810 installed <13>Dec 25 04:39:10 rpmi: usbids-20240206-alt1 sisyphus+339943.100.1.1 1707270512 installed <13>Dec 25 04:39:10 rpmi: pciids-20241129-alt1 sisyphus+363612.100.1.1 1732846470 installed <13>Dec 25 04:39:10 rpmi: hwdata-0.384-alt1 sisyphus+354460.100.1.1 1722898493 installed <13>Dec 25 04:39:10 rpmi: gtk+3-themes-incompatible-3.20-alt3 1461944560 installed <13>Dec 25 04:39:10 rpmi: perl-Try-Tiny-0.31-alt1 sisyphus+290597.100.1.1 1637915507 installed <13>Dec 25 04:39:10 rpmi: perl-IO-Socket-IP-0.42-alt1 sisyphus+325815.100.1.2 1690571193 installed <13>Dec 25 04:39:10 rpmi: perl-Module-Load-0.36-alt1 sisyphus+258992.100.1.1 1601543407 installed <13>Dec 25 04:39:10 rpmi: perl-Compress-Raw-Bzip2-2.210-alt1 sisyphus+343108.100.1.3 1710881036 installed <13>Dec 25 04:39:10 rpmi: perl-IO-Compress-Brotli-2:0.004001-alt3 sisyphus+335067.1200.1.1 1700901589 installed <13>Dec 25 04:39:10 rpmi: perl-Clone-0.46-alt1 sisyphus+335067.1100.1.1 1700901562 installed <13>Dec 25 04:39:10 rpmi: perl-HTML-Tagset-3.24-alt1 sisyphus+343117.100.1.3 1710883587 installed <13>Dec 25 04:39:10 rpmi: perl-Term-ANSIColor-5.01-alt1 sisyphus+244783.100.1.2 1579747505 installed <13>Dec 25 04:39:10 rpmi: perl-Data-Dump-1.25-alt1 sisyphus+276551.100.1.1 1625126880 installed <13>Dec 25 04:39:10 rpmi: perl-Filter-1.64-alt1 sisyphus+335067.400.1.1 1700901412 installed <13>Dec 25 04:39:10 rpmi: perl-Encode-3.21-alt1 sisyphus+343095.100.1.1 1710875477 installed <13>Dec 25 04:39:10 rpmi: perl-URI-5.27-alt1 sisyphus+340901.100.1.1 1708180683 installed <13>Dec 25 04:39:10 rpmi: perl-IO-Compress-2.206-alt1 sisyphus+325819.100.1.1 1690563199 installed <13>Dec 25 04:39:10 rpmi: perl-Net-HTTP-6.23-alt1 sisyphus+323470.100.1.1 1687422469 installed <13>Dec 25 04:39:10 rpmi: perl-HTML-Parser-3.82-alt1 sisyphus+343116.100.1.3 1710883258 installed <13>Dec 25 04:39:10 rpmi: perl-WWW-RobotRules-6.02-alt1 1329756211 installed <13>Dec 25 04:39:10 rpmi: perl-Encode-Locale-1.05-alt1 1444608613 installed <13>Dec 25 04:39:10 rpmi: perl-IO-HTML-1.004-alt1 sisyphus+258983.100.1.1 1601542619 installed <13>Dec 25 04:39:10 rpmi: perl-HTTP-Message-6.45-alt1 sisyphus+330728.100.1.1 1696162276 installed <13>Dec 25 04:39:10 rpmi: perl-HTTP-Negotiate-6.01-alt1 1329760563 installed <13>Dec 25 04:39:10 rpmi: perl-libwww-6.77-alt1 sisyphus+343120.100.1.2 1710884405 installed <13>Dec 25 04:39:10 rpmi: perl-XML-LibXML-2.0210-alt8 sisyphus+355798.100.1.1 1724340088 installed <13>Dec 25 04:39:10 rpmi: perl-XML-SAX-1.02-alt1 sisyphus+232322.100.1.1 1560758406 installed <13>Dec 25 04:39:10 rpmi: perl-XML-Simple-2.25-alt2 sisyphus+257498.100.1.1 1599324034 installed <13>Dec 25 04:39:10 rpmi: icon-naming-utils-0.8.90-alt1 sisyphus+276851.100.1.1 1625243947 installed <13>Dec 25 04:39:10 rpmi: icon-theme-adwaita-47.0-alt1 sisyphus+357735.1000.3.1 1726642413 installed <13>Dec 25 04:39:10 rpmi: libmysofa-1.3.3-alt1 sisyphus+360234.100.1.1 1729426691 installed <13>Dec 25 04:39:10 rpmi: libldac2-2.0.2.3-alt0.1 sisyphus+278007.100.1.2 1625973044 installed <13>Dec 25 04:39:10 rpmi: libsigc++2-2.12.1-alt1 sisyphus+331046.200.2.1 1696511642 installed <13>Dec 25 04:39:10 rpmi: libconfig-c++11-1.7.3-alt1 sisyphus+356893.2177.17.1 1725864292 installed <13>Dec 25 04:39:10 rpmi: libtdb-1.4.10-alt1 sisyphus+342425.100.8.1 1714748986 installed <13>Dec 25 04:39:10 rpmi: libltdl7-2.4.7-alt5 sisyphus+341963.200.3.1 1711659208 installed <13>Dec 25 04:39:10 rpmi: libasyncns-0.8-alt2.qa1 sisyphus+275091.100.1.1 1624402241 installed <13>Dec 25 04:39:10 rpmi: sound-theme-freedesktop-0.8-alt1 sisyphus+277010.100.1.2 1625346634 installed <13>Dec 25 04:39:10 rpmi: libyaml2-0.2.5-alt1 sisyphus+278391.100.1.1 1626094928 installed <13>Dec 25 04:39:10 rpmi: libgtest-1.15.2-alt1 sisyphus+364140.100.8.1 1733730026 installed <13>Dec 25 04:39:10 rpmi: libbluez-5.79-alt1 sisyphus+362585.400.4.1 1731678491 installed <13>Dec 25 04:39:10 rpmi: libfaad2-2.11.1-alt1 sisyphus+338260.100.2.2 1705755212 installed <13>Dec 25 04:39:10 rpmi: libfaac0-1.28-alt2 sisyphus+346184.200.2.1 1716351469 installed <13>Dec 25 04:39:10 rpmi: libdca0-0.0.5-alt4.qa1 sisyphus+275349.100.1.2 1624487408 installed <13>Dec 25 04:39:10 rpmi: libzxing-cpp-2.2.1-alt1 sisyphus+336233.100.1.1 1702264522 installed <13>Dec 25 04:39:10 rpmi: libgme-0.6.3-alt2 sisyphus+293048.100.1.1 1641452306 installed <13>Dec 25 04:39:10 rpmi: libudfread-1.1.2-alt2 sisyphus+286325.100.1.1 1633263312 installed <13>Dec 25 04:39:10 rpmi: libbluray-1.3.4-alt1 sisyphus+310888.100.1.1 1669800489 installed <13>Dec 25 04:39:10 rpmi: libzimg2-3.0.5-alt1 sisyphus+324805.100.1.1 1689254328 installed <13>Dec 25 04:39:10 rpmi: libfftw3-common-3.3.10-alt2 sisyphus+363193.200.2.1 1732292771 installed <13>Dec 25 04:39:10 rpmi: libfftw3-3.3.10-alt2 sisyphus+363193.200.2.1 1732292771 installed <13>Dec 25 04:39:10 rpmi: libchromaprint1-1.5.1-alt1 sisyphus+346100.200.2.1 1716252063 installed <13>Dec 25 04:39:10 rpmi: librubberband3-4.0.0-alt1 sisyphus+363577.100.1.1 1732799669 installed <13>Dec 25 04:39:10 rpmi: vulkan-filesystem-1.3.296-alt1 sisyphus+365035.1000.5.1 1734354968 installed <13>Dec 25 04:39:10 rpmi: libvulkan1-1.3.296-alt1 sisyphus+365035.1000.5.1 1734354968 installed <13>Dec 25 04:39:10 rpmi: libdovi3-2.1.3-alt1 sisyphus+365507.100.1.1 1734692980 installed <13>Dec 25 04:39:10 rpmi: libplacebo338-6.338.2-alt0.2 sisyphus+341163.100.1.1 1708438285 installed <13>Dec 25 04:39:10 rpmi: libsoxr-0.1.3-alt1.1 sisyphus+317908.100.1.1 1680415073 installed <13>Dec 25 04:39:10 rpmi: libxvid-1.3.7-alt1 sisyphus+292833.100.1.1 1640949610 installed <13>Dec 25 04:39:10 rpmi: libnuma-2.0.19-alt1 sisyphus+363830.100.1.1 1733131852 installed <13>Dec 25 04:39:11 rpmi: libx265-199-3.5-alt1.1 sisyphus+277560.100.1.1 1625697230 installed <13>Dec 25 04:39:11 rpmi: libx264-164-alt1.1 sisyphus+322210.100.1.1 1685494917 installed <13>Dec 25 04:39:11 rpmi: libxshmfence-1.3.2-alt1 sisyphus+311428.400.1.1 1670577525 installed <13>Dec 25 04:39:11 rpmi: libsensors3-3.6.0-alt4 sisyphus+366234.100.1.1 1734814779 installed <13>Dec 25 04:39:11 rpmi: libpciaccess-1:0.18.1-alt1 sisyphus+343583.300.1.1 1711440789 installed <13>Dec 25 04:39:11 rpmi: libdrm-1:2.4.124-alt1 sisyphus+364215.100.1.1 1733469813 installed <13>Dec 25 04:39:11 rpmi: libgbm-4:24.3.2-alt1 sisyphus+365536.100.1.1 1734711581 installed <13>Dec 25 04:39:11 rpmi: llvm18.1-filesystem-18.1.8-alt0.4 sisyphus+364551.100.1.1 1733763186 installed <13>Dec 25 04:39:11 rpmi: llvm18.1-polly-18.1.8-alt0.4 sisyphus+364551.100.1.1 1733763186 installed <13>Dec 25 04:39:11 rpmi: libedit3-3.1.20230828-alt1 sisyphus+330914.200.3.1 1696922743 installed <13>Dec 25 04:39:11 rpmi: llvm18.1-gold-18.1.8-alt0.4 sisyphus+364551.100.1.1 1733763186 installed <13>Dec 25 04:39:13 rpmi: llvm18.1-libs-18.1.8-alt0.4 sisyphus+364551.100.1.1 1733763186 installed <13>Dec 25 04:39:13 rpmi: libsnappy-1.1.7-alt1 sisyphus+276400.100.1.2 1625016393 installed <13>Dec 25 04:39:13 rpmi: libdatrie-0.2.13-alt1_7 sisyphus+328221.100.1.1 1693336966 installed <13>Dec 25 04:39:13 rpmi: libthai-0.1.29-alt1_6 sisyphus+328230.100.1.2 1693348044 installed <13>Dec 25 04:39:13 rpmi: libdeflate-1.22-alt1 sisyphus+359192.100.1.1 1728330316 installed <13>Dec 25 04:39:13 rpmi: libtiff5-4.4.0-alt4 sisyphus+322581.100.1.2 1686180089 installed <13>Dec 25 04:39:13 rpmi: libgdk-pixbuf-locales-2.42.12-alt1 sisyphus+348142.100.1.1 1715791856 installed <13>Dec 25 04:39:13 rpmi: libopencore-amrwb0-0.1.6-alt1 sisyphus+307923.100.1.1 1665032483 installed <13>Dec 25 04:39:13 rpmi: libopencore-amrnb0-0.1.6-alt1 sisyphus+307923.100.1.1 1665032483 installed <13>Dec 25 04:39:13 rpmi: libcodec2_1.2-1.2.0-alt1 sisyphus+340564.40.2.1 1707820763 installed <13>Dec 25 04:39:13 rpmi: gobject-introspection-1.82.0-alt1 sisyphus+357735.200.3.1 1726641712 installed <13>Dec 25 04:39:13 rpmi: libduktape207-2.7.0-alt3 sisyphus+352341.100.1.1 1720324462 installed <13>Dec 25 04:39:13 rpmi: libjson-c5-0.18-alt1 sisyphus+358387.100.1.1 1727298142 installed <13>Dec 25 04:39:13 rpmi: libCharLS2-2.0.0-alt1_3 sisyphus+346001.100.2.1 1716202266 installed <13>Dec 25 04:39:13 rpmi: gcc-c++-common-1.4.28-alt1 sisyphus+348678.100.1.1 1716396142 installed <13>Dec 25 04:39:13 rpmi: libstdc++14-devel-14.2.1-alt1 sisyphus+360995.100.1.1 1730131018 installed <13>Dec 25 04:39:14 rpmi: gcc14-c++-14.2.1-alt1 sisyphus+360995.100.1.1 1730131018 installed <13>Dec 25 04:39:14 rpmi: libpixman-3:0.44.2-alt1 sisyphus+364211.100.1.1 1733467622 installed <13>Dec 25 04:39:14 rpmi: libmpdec3-2.5.1-alt3 sisyphus+314490.500.5.1 1675432004 installed <13>Dec 25 04:39:14 rpmi: libb2-0.98.1-alt1_1 sisyphus+291614.100.1.1 1638962877 installed <13>Dec 25 04:39:14 rpmi: flexiblas-3.4.4-alt3 sisyphus+355796.100.1.1 1724340590 installed <13>Dec 25 04:39:14 rpmi: libflexiblas.3-3.4.4-alt3 sisyphus+355796.100.1.1 1724340590 installed <13>Dec 25 04:39:15 rpmi: flexiblas-netlib-3.4.4-alt3 sisyphus+355796.100.1.1 1724340590 installed <13>Dec 25 04:39:15 rpmi: libceres4-2.2.0-alt2 sisyphus+350246.370.8.1 1724736407 installed <13>Dec 25 04:39:15 rpmi: libdevmapper-1.02.202-alt1 sisyphus+361775.200.5.1 1730990757 installed <13>Dec 25 04:39:15 rpmi: mount-2.39.2-alt1 sisyphus+327286.4500.14.1 1711486324 installed <13>Dec 25 04:39:15 rpmi: losetup-2.39.2-alt1 sisyphus+327286.4500.14.1 1711486324 installed <13>Dec 25 04:39:15 rpmi: lsblk-2.39.2-alt1 sisyphus+327286.4500.14.1 1711486324 installed <13>Dec 25 04:39:15 rpmi: dconf-profile-0.1-alt1 sisyphus+325633.340.3.1 1690415358 installed <13>Dec 25 04:39:15 rpmi: cmake-modules-3.31.2-alt2 sisyphus+364756.100.1.1 1733932352 installed <13>Dec 25 04:39:15 rpmi: libuv-1.49.1-alt1 sisyphus+364651.40.2.1 1733856345 installed <13>Dec 25 04:39:15 rpmi: librhash-1.3.5-alt3 sisyphus+286141.40.2.1 1632982456 installed <13>Dec 25 04:39:15 rpmi: libjsoncpp24-1.9.4-alt2 sisyphus+346331.200.2.1 1716448551 installed <13>Dec 25 04:39:15 rpmi: publicsuffix-list-dafsa-20240911-alt1 sisyphus+357399.100.1.1 1726160479 installed <13>Dec 25 04:39:15 rpmi: libpsl-0.21.5-alt1 sisyphus+338474.100.1.1 1705684769 installed <13>Dec 25 04:39:15 rpmi: libnghttp3.9-1.7.0-alt1 sisyphus+366376.100.1.1 1735020696 installed <13>Dec 25 04:39:15 rpmi: libnghttp2-1.64.0-alt1 sisyphus+363795.200.2.1 1733118555 installed <13>Dec 25 04:39:15 rpmi: openldap-common-2.6.9-alt1 sisyphus+364781.100.1.1 1733971238 installed <13>Dec 25 04:39:15 rpmi: libntlm-1.5-alt1 sisyphus+278100.3300.1.1 1626058899 installed <13>Dec 25 04:39:15 rpmi: libidn-1.37-alt2 sisyphus+300849.100.1.1 1653769687 installed <13>Dec 25 04:39:15 rpmi: libverto-0.3.2-alt1_1 sisyphus+321176.2200.10.2 1684803947 installed <13>Dec 25 04:39:15 rpmi: liblmdb-0.9.33-alt1 sisyphus+360625.100.1.1 1729819640 installed <13>Dec 25 04:39:15 rpmi: libkeyutils-1.6.3-alt1 sisyphus+346336.200.2.2 1716472658 installed <13>Dec 25 04:39:15 rpmi: libcom_err-1.47.1.0.10.ad56-alt2 sisyphus+363497.200.3.1 1732729908 installed <13>Dec 25 04:39:15 rpmi: rpm-macros-cmake-3.29.1-alt1 sisyphus+344518.300.3.1 1712379787 installed <13>Dec 25 04:39:15 rpmi: libboost_context1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:15 rpmi: libboost_fiber1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:15 rpmi: libboost_stacktrace1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:15 rpmi: libboost_nowide1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:15 rpmi: libboost_url1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:15 rpmi: libboost_test1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:15 rpmi: libboost_serialization1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:15 rpmi: libboost_random1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:15 rpmi: libboost_iostreams1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:15 rpmi: libboost_json1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:15 rpmi: libboost_regex1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:15 rpmi: libboost_graph1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:15 rpmi: libboost_date_time1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:15 rpmi: libboost_container1.86.0-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:17 rpmi: boost-devel-headers-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:17 rpmi: boost-devel-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:17 rpmi: desktop-file-utils-0.26-alt6 sisyphus+331944.100.1.3 1697550026 installed <13>Dec 25 04:39:17 rpmi: shared-mime-info-2.4-alt1 sisyphus+334259.100.1.1 1699787316 installed <13>Dec 25 04:39:17 rpmi: gsettings-desktop-schemas-data-47.1-alt1 sisyphus+357735.300.3.1 1726641752 installed <13>Dec 25 04:39:17 rpmi: libgio-2.82.4-alt1 sisyphus+364807.100.1.1 1733991592 installed <13>Dec 25 04:39:17 rpmi: gsettings-desktop-schemas-47.1-alt1 sisyphus+357735.300.3.1 1726641752 installed <13>Dec 25 04:39:17 rpmi: libgstreamer1.0-1.24.10-alt1 sisyphus+364070.100.1.1 1733315992 installed <13>Dec 25 04:39:17 rpmi: libgdk-pixbuf-2.42.12-alt1 sisyphus+348142.100.1.1 1715791856 installed <13>Dec 25 04:39:17 rpmi: gstreamer1.0-1.24.10-alt1 sisyphus+364070.100.1.1 1733315992 installed <13>Dec 25 04:39:17 rpmi: libgstreamer1.0-gir-1.24.10-alt1 sisyphus+364070.100.1.1 1733315992 installed <13>Dec 25 04:39:17 rpmi: libglibmm-2.66.7-alt1 sisyphus+344717.100.1.1 1712649439 installed <13>Dec 25 04:39:17 rpmi: libjson-glib-1.10.6-alt1 sisyphus+364645.100.1.1 1733849752 installed <13>Dec 25 04:39:17 rpmi: libgusb-0.4.9-alt1 sisyphus+345693.100.1.1 1713857461 installed <13>Dec 25 04:39:17 rpmi: libcolord-1.4.7-alt1.1 sisyphus+338793.100.1.1 1706039016 installed <13>Dec 25 04:39:17 rpmi: libxml++2-2.42.3-alt1 sisyphus+338062.100.1.2 1705656007 installed <13>Dec 25 04:39:17 rpmi: libffado-2.4.9-alt1 sisyphus+359940.100.1.1 1729093015 installed <13>Dec 25 04:39:17 rpmi: gtk4-update-icon-cache-4.16.7-alt1 sisyphus+363301.100.1.1 1732451644 installed <13>Dec 25 04:39:17 rpmi: libjxl0.11-0.11.1-alt1 sisyphus+363608.100.5.1 1732974039 installed <13>Dec 25 04:39:17 rpmi: libjxl-pixbuf-loader-0.11.1-alt1 sisyphus+363608.100.5.1 1732974039 installed <13>Dec 25 04:39:17 rpmi: libnotify-0.8.3-alt1 sisyphus+331330.100.1.1 1696929866 installed <13>Dec 25 04:39:17 rpmi: libdconf-0.40.0-alt3 sisyphus+325650.100.1.1 1690417205 installed <13>Dec 25 04:39:17 rpmi: libnice-0.1.22-alt1 sisyphus+342031.100.1.1 1709629225 installed <13>Dec 25 04:39:17 rpmi: libmanette-0.2.9-alt1 sisyphus+357735.1700.3.1 1726642911 installed <13>Dec 25 04:39:17 rpmi: libsecret-0.21.4-alt1 sisyphus+341317.100.1.1 1708732348 installed <13>Dec 25 04:39:17 rpmi: xdg-dbus-proxy-0.1.6-alt1 sisyphus+355814.100.1.1 1724358497 installed <13>Dec 25 04:39:17 rpmi: systemd-modules-common-1:255.13-alt1 sisyphus+359453.100.2.1 1728651180 installed <13>Dec 25 04:39:17 rpmi: systemd-sysctl-common-1:255.13-alt1 sisyphus+359453.100.2.1 1728651180 installed <13>Dec 25 04:39:17 rpmi: systemd-tmpfiles-common-1:255.13-alt1 sisyphus+359453.100.2.1 1728651180 installed <13>Dec 25 04:39:17 rpmi: systemd-utils-filetriggers-1:255.13-alt1 sisyphus+359453.100.2.1 1728651180 installed <13>Dec 25 04:39:17 rpmi: libfdisk-2.39.2-alt1 sisyphus+327286.4500.14.1 1711486324 installed <13>Dec 25 04:39:17 rpmi: libX11-locales-3:1.8.10-alt1 sisyphus+353866.100.1.1 1722240771 installed <13>Dec 25 04:39:17 rpmi: libXdmcp-1.1.5-alt1 sisyphus+343583.700.1.1 1711441061 installed <13>Dec 25 04:39:17 rpmi: libxcb-1.17.0-alt1 sisyphus+345308.200.1.1 1713342004 installed <13>Dec 25 04:39:17 rpmi: libX11-3:1.8.10-alt1 sisyphus+353866.100.1.1 1722240771 installed <13>Dec 25 04:39:17 rpmi: libXext-1.3.6-alt1 sisyphus+343583.1000.1.1 1711441101 installed <13>Dec 25 04:39:17 rpmi: libXrender-0.9.11-alt1 sisyphus+308841.100.1.1 1666436130 installed <13>Dec 25 04:39:17 rpmi: libcairo-1:1.18.2-alt1 sisyphus+357195.100.1.1 1725948391 installed <13>Dec 25 04:39:17 rpmi: libXfixes-6.0.1-alt1 sisyphus+331490.300.1.1 1697023233 installed <13>Dec 25 04:39:17 rpmi: libcairo-gobject-1:1.18.2-alt1 sisyphus+357195.100.1.1 1725948391 installed <13>Dec 25 04:39:17 rpmi: libXi-1.8-alt1 sisyphus+285490.200.1.1 1632124174 installed <13>Dec 25 04:39:17 rpmi: libXtst-1.2.4-alt1 sisyphus+308663.1300.1.1 1666168495 installed <13>Dec 25 04:39:17 rpmi: libXrandr-1.5.4-alt1 sisyphus+330992.100.1.1 1696485400 installed <13>Dec 25 04:39:17 rpmi: libXxf86vm-1.1.5-alt1 sisyphus+308663.1400.1.1 1666168523 installed <13>Dec 25 04:39:18 rpmi: libGLX-mesa-4:24.3.2-alt1 sisyphus+365536.100.1.1 1734711581 installed <13>Dec 25 04:39:18 rpmi: libGLX-7:1.7.0-alt1 sisyphus+330949.100.1.1 1696424893 installed <13>Dec 25 04:39:18 rpmi: libGL-7:1.7.0-alt1 sisyphus+330949.100.1.1 1696424893 installed <13>Dec 25 04:39:18 rpmi: libva-2.22.0-alt1 sisyphus+351641.100.2.1 1719561314 installed <13>Dec 25 04:39:18 rpmi: libXv-1.0.12-alt1 sisyphus+311188.600.1.1 1670233799 installed <13>Dec 25 04:39:18 rpmi: libzvbi-0.2.35-alt2 sisyphus+275416.100.1.3 1624507095 installed <13>Dec 25 04:39:18 rpmi: libXdamage-1.1.6-alt1 sisyphus+311188.300.1.1 1670233711 installed <13>Dec 25 04:39:20 rpmi: libxcb-devel-1.17.0-alt1 sisyphus+345308.200.1.1 1713342004 installed <13>Dec 25 04:39:20 rpmi: libX11-devel-3:1.8.10-alt1 sisyphus+353866.100.1.1 1722240771 installed <13>Dec 25 04:39:20 rpmi: libXrender-devel-0.9.11-alt1 sisyphus+308841.100.1.1 1666436130 installed <13>Dec 25 04:39:20 rpmi: libXext-devel-1.3.6-alt1 sisyphus+343583.1000.1.1 1711441101 installed <13>Dec 25 04:39:20 rpmi: libEGL-mesa-4:24.3.2-alt1 sisyphus+365536.100.1.1 1734711581 installed <13>Dec 25 04:39:20 rpmi: libEGL-7:1.7.0-alt1 sisyphus+330949.100.1.1 1696424893 installed <13>Dec 25 04:39:20 rpmi: libgst-plugins1.0-1.24.10-alt1 sisyphus+364070.200.1.1 1733316107 installed <13>Dec 25 04:39:20 rpmi: libgst-plugins1.0-gir-1.24.10-alt1 sisyphus+364070.200.1.1 1733316107 installed <13>Dec 25 04:39:20 rpmi: libXcursor-1.2.2-alt1 sisyphus+343583.600.1.1 1711441025 installed <13>Dec 25 04:39:20 rpmi: libharfbuzz-cairo-10.1.0-alt1 sisyphus+361773.100.1.1 1730824042 installed <13>Dec 25 04:39:20 rpmi: libXft-2.3.8-alt1 sisyphus+331490.400.1.1 1697023269 installed <13>Dec 25 04:39:20 rpmi: libpango-1.55.0-alt1 sisyphus+364011.100.1.1 1733245601 installed <13>Dec 25 04:39:20 rpmi: librsvg-1:2.59.2-alt1 sisyphus+361144.100.1.1 1730276750 installed <13>Dec 25 04:39:20 rpmi: libvdpau-1:1.5-alt1 sisyphus+298034.100.1.1 1649336822 installed <13>Dec 25 04:39:20 rpmi: libavutil59-2:7.1-alt1 sisyphus+348582.1076.15.2 1733949254 installed <13>Dec 25 04:39:20 rpmi: libswscale8-2:7.1-alt1 sisyphus+348582.1076.15.2 1733949254 installed <13>Dec 25 04:39:20 rpmi: libswresample5-2:7.1-alt1 sisyphus+348582.1076.15.2 1733949254 installed <13>Dec 25 04:39:21 rpmi: libavcodec61-2:7.1-alt1 sisyphus+348582.1076.15.2 1733949254 installed <13>Dec 25 04:39:21 rpmi: libpostproc58-2:7.1-alt1 sisyphus+348582.1076.15.2 1733949254 installed <13>Dec 25 04:39:21 rpmi: libXinerama-1.1.5-alt1 sisyphus+309287.100.1.1 1667213208 installed <13>Dec 25 04:39:21 rpmi: xprop-1.2.5-alt1 sisyphus+279025.100.1.1 1626354198 installed <13>Dec 25 04:39:21 rpmi: libXcomposite-0.4.6-alt1 sisyphus+311188.200.1.1 1670233682 installed <13>Dec 25 04:39:21 rpmi: libcaca-0.99.20.3-alt0.1 sisyphus+362200.100.1.1 1731357807 installed <13>Dec 25 04:39:21 rpmi: liblz4-1:1.9.4-alt1 sisyphus+309416.100.1.1 1667412981 installed <13>Dec 25 04:39:21 rpmi: libsystemd-1:255.13-alt1 sisyphus+359453.100.2.1 1728651180 installed <13>Dec 25 04:39:21 rpmi: libdbus-1.14.10-alt1 sisyphus+327286.5700.14.1 1711487401 installed <13>Dec 25 04:39:21 rpmi: libpulseaudio-17.0-alt2 sisyphus+339257.100.1.1 1706519226 installed <13>Dec 25 04:39:21 rpmi: libat-spi2-core-2.54.0-alt1 sisyphus+357735.600.3.1 1726642126 installed <13>Dec 25 04:39:21 rpmi: libavahi-0.8-alt4 sisyphus+344258.100.1.1 1712133856 installed <13>Dec 25 04:39:21 rpmi: libjavascriptcoregtk4-2.46.5-alt1 sisyphus+365398.100.1.1 1734557455 installed <13>Dec 25 04:39:21 rpmi: at-spi2-atk-2.54.0-alt1 sisyphus+357735.600.3.1 1726642126 installed <13>Dec 25 04:39:21 rpmi: dbus-tools-1.14.10-alt1 sisyphus+327286.5700.14.1 1711487401 installed <86>Dec 25 04:39:21 groupadd[1190876]: group added to /etc/group: name=messagebus, GID=999 <86>Dec 25 04:39:21 groupadd[1190876]: group added to /etc/gshadow: name=messagebus <86>Dec 25 04:39:21 groupadd[1190876]: new group: name=messagebus, GID=999 <86>Dec 25 04:39:21 useradd[1190885]: new user: name=messagebus, UID=999, GID=999, home=/run/dbus, shell=/dev/null, from=none <13>Dec 25 04:39:21 rpmi: dbus-1.14.10-alt1 sisyphus+327286.5700.14.1 1711487401 installed <13>Dec 25 04:39:22 rpmi: dbus-tools-gui-1.14.10-alt1 sisyphus+327286.5700.14.1 1711487401 installed <13>Dec 25 04:39:22 rpmi: dconf-0.40.0-alt3 sisyphus+325650.100.1.1 1690417205 installed <13>Dec 25 04:39:22 rpmi: libgtk+3-schemas-3.24.43-alt1 sisyphus+352627.100.1.1 1720700731 installed <13>Dec 25 04:39:22 rpmi: libzbar-0.23.93-alt1 sisyphus+350305.100.1.1 1717507821 installed <13>Dec 25 04:39:22 rpmi: libpolkit-124-alt3 sisyphus+351454.100.1.1 1719236630 installed <13>Dec 25 04:39:22 rpmi: rpm-macros-alternatives-0.5.2-alt2 sisyphus+315270.200.2.1 1676457367 installed <13>Dec 25 04:39:22 rpmi: alternatives-0.5.2-alt2 sisyphus+315270.200.2.1 1676457367 installed <13>Dec 25 04:39:22 rpmi: ca-certificates-2024.12.10-alt1 sisyphus+364633.200.3.1 1733918603 installed <13>Dec 25 04:39:22 rpmi: ca-trust-0.2.0-alt1 sisyphus+344843.100.1.1 1712743326 installed <13>Dec 25 04:39:22 rpmi: p11-kit-trust-1:0.25.5-alt1 sisyphus+352553.100.1.1 1720622573 installed <13>Dec 25 04:39:22 rpmi: libcrypto3-3.1.7-alt2 sisyphus+359910.100.1.1 1729080439 installed <13>Dec 25 04:39:22 rpmi: libssl3-3.1.7-alt2 sisyphus+359910.100.1.1 1729080439 installed <13>Dec 25 04:39:22 rpmi: python3-3.12.8-alt1 sisyphus+364336.100.1.1 1733526854 installed <13>Dec 25 04:39:23 rpmi: python3-base-3.12.8-alt1 sisyphus+364336.100.1.1 1733526854 installed <86>Dec 25 04:39:23 groupadd[1191536]: group added to /etc/group: name=_keytab, GID=998 <86>Dec 25 04:39:23 groupadd[1191536]: group added to /etc/gshadow: name=_keytab <86>Dec 25 04:39:23 groupadd[1191536]: new group: name=_keytab, GID=998 <13>Dec 25 04:39:23 rpmi: libkrb5-1.21.3-alt2 sisyphus+351857.100.1.1 1719735141 installed <13>Dec 25 04:39:23 rpmi: python3-module-more-itertools-10.5.0-alt1 sisyphus+357221.100.1.1 1725964420 installed <13>Dec 25 04:39:23 rpmi: libkmod-32-alt1 sisyphus+357452.100.2.1 1727718007 installed <13>Dec 25 04:39:23 rpmi: python3-module-jaraco.functools-4.1.0-alt1 sisyphus+358564.100.1.1 1727528718 installed <13>Dec 25 04:39:23 rpmi: systemd-utils-standalone-1:255.13-alt1 sisyphus+359453.100.2.1 1728651180 installed <13>Dec 25 04:39:23 rpmi: at-spi2-core-2.54.0-alt1 sisyphus+357735.600.3.1 1726642126 installed <13>Dec 25 04:39:23 rpmi: kmod-32-alt1 sisyphus+357452.100.2.1 1727718007 installed <13>Dec 25 04:39:23 rpmi: dmsetup-1.02.202-alt1 sisyphus+361775.200.5.1 1730990757 installed <86>Dec 25 04:39:23 groupadd[1191725]: group added to /etc/group: name=tape, GID=997 <86>Dec 25 04:39:23 groupadd[1191725]: group added to /etc/gshadow: name=tape <86>Dec 25 04:39:23 groupadd[1191725]: new group: name=tape, GID=997 <86>Dec 25 04:39:23 groupadd[1191738]: group added to /etc/group: name=dialout, GID=996 <86>Dec 25 04:39:23 groupadd[1191738]: group added to /etc/gshadow: name=dialout <86>Dec 25 04:39:23 groupadd[1191738]: new group: name=dialout, GID=996 <86>Dec 25 04:39:23 groupadd[1191756]: group added to /etc/group: name=input, GID=995 <86>Dec 25 04:39:23 groupadd[1191756]: group added to /etc/gshadow: name=input <86>Dec 25 04:39:23 groupadd[1191756]: new group: name=input, GID=995 <86>Dec 25 04:39:23 groupadd[1191775]: group added to /etc/group: name=video, GID=994 <86>Dec 25 04:39:23 groupadd[1191775]: group added to /etc/gshadow: name=video <86>Dec 25 04:39:23 groupadd[1191775]: new group: name=video, GID=994 <86>Dec 25 04:39:23 groupadd[1191788]: group added to /etc/group: name=render, GID=993 <86>Dec 25 04:39:23 groupadd[1191788]: group added to /etc/gshadow: name=render <86>Dec 25 04:39:23 groupadd[1191788]: new group: name=render, GID=993 <86>Dec 25 04:39:23 groupadd[1191803]: group added to /etc/group: name=sgx, GID=992 <86>Dec 25 04:39:23 groupadd[1191803]: group added to /etc/gshadow: name=sgx <86>Dec 25 04:39:23 groupadd[1191803]: new group: name=sgx, GID=992 <13>Dec 25 04:39:23 rpmi: udev-1:255.13-alt1 sisyphus+359453.100.2.1 1728651180 installed <86>Dec 25 04:39:24 groupadd[1192238]: group added to /etc/group: name=colord, GID=991 <86>Dec 25 04:39:24 groupadd[1192238]: group added to /etc/gshadow: name=colord <86>Dec 25 04:39:24 groupadd[1192238]: new group: name=colord, GID=991 <86>Dec 25 04:39:24 useradd[1192248]: new user: name=colord, UID=998, GID=991, home=/var/colord, shell=/dev/null, from=none <13>Dec 25 04:39:24 rpmi: colord-1.4.7-alt1.1 sisyphus+338793.100.1.1 1706039016 installed <13>Dec 25 04:39:24 rpmi: libgsasl18-2.2.1-alt2 sisyphus+359713.200.2.1 1728905430 installed <86>Dec 25 04:39:24 groupadd[1192279]: group added to /etc/group: name=sasl, GID=990 <86>Dec 25 04:39:24 groupadd[1192279]: group added to /etc/gshadow: name=sasl <86>Dec 25 04:39:24 groupadd[1192279]: new group: name=sasl, GID=990 <13>Dec 25 04:39:24 rpmi: libsasl2-3-2.1.28-alt2 sisyphus+343335.100.1.1 1711112544 installed <13>Dec 25 04:39:24 rpmi: libldap2-2.6.9-alt1 sisyphus+364781.100.1.1 1733971238 installed <13>Dec 25 04:39:24 rpmi: libssh-0.10.6-alt1 sisyphus+338050.100.1.2 1705656358 installed <13>Dec 25 04:39:24 rpmi: libcups-2.4.11-alt1 sisyphus+359120.200.2.1 1728202635 installed <13>Dec 25 04:39:25 rpmi: libgtk+3-3.24.43-alt1 sisyphus+352627.100.1.1 1720700731 installed <13>Dec 25 04:39:25 rpmi: libneon-0.32.5-alt1 sisyphus+337867.100.1.2 1705641062 installed <13>Dec 25 04:39:25 rpmi: glib2-devel-2.82.4-alt1 sisyphus+364807.100.1.1 1733991592 installed <13>Dec 25 04:39:25 rpmi: libcairo-devel-1:1.18.2-alt1 sisyphus+357195.100.1.1 1725948391 installed <13>Dec 25 04:39:25 rpmi: fontconfig-devel-2.15.0-alt1 sisyphus+355771.100.2.3 1724337298 installed <13>Dec 25 04:39:25 rpmi: libfreetype-devel-2.13.3-alt1 sisyphus+355656.100.1.1 1724221064 installed <13>Dec 25 04:39:25 rpmi: libharfbuzz-devel-10.1.0-alt1 sisyphus+361773.100.1.1 1730824042 installed <13>Dec 25 04:39:25 rpmi: libpython3-3.12.8-alt1 sisyphus+364336.100.1.1 1733526854 installed <13>Dec 25 04:39:25 rpmi: python3-module-py3dephell-0.3.1-alt1 sisyphus+365261.200.1.1 1734463433 installed <13>Dec 25 04:39:25 rpmi: python3-module-autocommand-2.2.2-alt1.1 sisyphus+339714.100.1.1 1706968174 installed <13>Dec 25 04:39:25 rpmi: python3-module-jaraco.context-6.0.1-alt1 sisyphus+357809.300.1.1 1726769204 installed <13>Dec 25 04:39:25 rpmi: python3-module-jaraco.text-4.0.0-alt1 sisyphus+353877.400.2.1 1722250727 installed <13>Dec 25 04:39:25 rpmi: python3-module-jaraco.collections-5.1.0-alt1 sisyphus+357809.200.1.1 1726769173 installed <13>Dec 25 04:39:25 rpmi: python3-module-packaging-24.2-alt1 sisyphus+362183.100.1.1 1731315992 installed <13>Dec 25 04:39:25 rpmi: python3-module-platformdirs-4.3.6-alt1 sisyphus+357787.200.1.1 1726664692 installed <13>Dec 25 04:39:25 rpmi: python3-module-wheel-0.45.1-alt1 sisyphus+363326.100.2.1 1732609968 installed <13>Dec 25 04:39:25 rpmi: python3-module-pkg_resources-1:75.6.0-alt1 sisyphus+363072.100.1.1 1732185054 installed <13>Dec 25 04:39:25 rpmi: tests-for-installed-python3-pkgs-0.1.26-alt2 sisyphus+365350.100.1.1 1734517486 installed <13>Dec 25 04:39:25 rpmi: rpm-build-python3-0.1.26-alt2 sisyphus+365350.100.1.1 1734517486 installed <13>Dec 25 04:39:27 rpmi: python3-dev-3.12.8-alt1 sisyphus+364336.100.1.1 1733526854 installed <13>Dec 25 04:39:27 rpmi: librabbitmq-c4-0.15.0-alt1 sisyphus+363621.100.1.1 1732865039 installed <13>Dec 25 04:39:27 rpmi: libavformat61-2:7.1-alt1 sisyphus+348582.1076.15.2 1733949254 installed <13>Dec 25 04:39:27 rpmi: libavfilter10-2:7.1-alt1 sisyphus+348582.1076.15.2 1733949254 installed <13>Dec 25 04:39:27 rpmi: gst-libav-1.24.10-alt1 sisyphus+364842.100.1.1 1734011176 installed <13>Dec 25 04:39:27 rpmi: libevent2.1-2.1.12-alt1 sisyphus+324359.3500.11.1 1689364661 installed <13>Dec 25 04:39:27 rpmi: libcamera-1:0.3.2-alt1 sisyphus+364140.300.8.1 1733730394 installed <13>Dec 25 04:39:27 rpmi: libshout2-2.4.6-alt2 sisyphus+326035.1600.1.1 1690667383 installed <13>Dec 25 04:39:27 rpmi: gst-plugins-good1.0-1.24.10-alt1 sisyphus+364070.300.1.1 1733316241 installed <13>Dec 25 04:39:28 rpmi: libarchive13-3.7.5-alt2 sisyphus+358189.100.1.1 1727162763 installed <13>Dec 25 04:39:28 rpmi: libssh2-1.11.0-alt2 sisyphus+339356.100.1.1 1706593137 installed <13>Dec 25 04:39:28 rpmi: libcurl-8.11.1-alt1 sisyphus+364692.100.1.1 1733905204 installed <13>Dec 25 04:39:28 rpmi: libwxBase3.2-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Dec 25 04:39:28 rpmi: libwxGTK3.2-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Dec 25 04:39:28 rpmi: libwxGTK3.2-gl-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Dec 25 04:39:28 rpmi: libwxGTK3.2-media-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Dec 25 04:39:28 rpmi: libwxGTK3.2-sound_sdlu-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Dec 25 04:39:28 rpmi: libproxy-0.5.9-alt1 sisyphus+360721.100.1.1 1729865346 installed <13>Dec 25 04:39:28 rpmi: glib-networking-2.80.0-alt1 sisyphus+342825.100.1.1 1710537082 installed <13>Dec 25 04:39:28 rpmi: libsoup-2.74.3-alt1.1 sisyphus+318260.100.1.1 1680994685 installed <13>Dec 25 04:39:28 rpmi: libraptor2-2.0.16-alt1 sisyphus+337177.100.1.1 1703495659 installed <13>Dec 25 04:39:28 rpmi: liblrdf-0.6.1-alt1 sisyphus+278205.100.1.1 1626077040 installed <13>Dec 25 04:39:28 rpmi: gdcm-3.0.21-alt1 sisyphus+364864.1000.3.1 1734089745 installed <13>Dec 25 04:39:30 rpmi: libopencv4.10-1:4.10.0-alt2 sisyphus+348582.3500.15.2 1733952016 installed <13>Dec 25 04:39:30 rpmi: alsa-ucm-conf-1.2.12-alt1 sisyphus+352670.100.1.1 1720712327 installed <13>Dec 25 04:39:30 rpmi: alsa-topology-conf-1.2.5.1-alt1 sisyphus+274777.100.1.1 1624089141 installed <13>Dec 25 04:39:30 rpmi: libalsa-1:1.2.12-alt1 sisyphus+352670.200.1.1 1720712401 installed <13>Dec 25 04:39:32 rpmi: flite-2.2-alt2 sisyphus+329889.100.1.1 1695115194 installed <13>Dec 25 04:39:32 rpmi: libcanberra-0.30-alt3 sisyphus+275093.100.2.3 1624562350 installed <13>Dec 25 04:39:32 rpmi: pipewire-libs-1.2.7-alt1 sisyphus+363440.100.1.1 1732632760 installed <13>Dec 25 04:39:32 rpmi: pipewire-jack-libs-1.2.7-alt1 sisyphus+363440.100.1.1 1732632760 installed <13>Dec 25 04:39:32 rpmi: libfluidsynth-2.4.1-alt1 sisyphus+363783.100.1.1 1733082177 installed <13>Dec 25 04:39:32 rpmi: libSDL-1.2.14-alt10 sisyphus+346015.200.2.1 1716212609 installed <13>Dec 25 04:39:32 rpmi: libmjpegtools2.1-2.2.1-alt2 sisyphus+332812.400.2.1 1698405785 installed <13>Dec 25 04:39:32 rpmi: gst-plugins-bad1.0-1.24.10-alt1 sisyphus+364070.400.1.1 1733316428 installed <13>Dec 25 04:39:33 rpmi: gst-plugins-base1.0-1.24.10-alt1 sisyphus+364070.200.1.1 1733316107 installed <13>Dec 25 04:39:36 rpmi: libwebkit2gtk-2.46.5-alt1 sisyphus+365398.100.1.1 1734557455 installed <13>Dec 25 04:39:36 rpmi: libwxGTK3.2-webview-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Dec 25 04:39:37 rpmi: libwxBase3.2-devel-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Dec 25 04:39:37 rpmi: libwxGTK3.2-devel-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Dec 25 04:39:39 rpmi: cmake-3.31.2-alt2 sisyphus+364756.100.1.1 1733932352 installed <13>Dec 25 04:39:39 rpmi: python3-module-setuptools-1:75.6.0-alt1 sisyphus+363072.100.1.1 1732185054 installed <13>Dec 25 04:39:39 rpmi: boost-filesystem-devel-1:1.86.0-alt2 sisyphus+363349.100.1.1 1732539309 installed <13>Dec 25 04:39:39 rpmi: gcc-c++-14-alt1 sisyphus+360995.300.1.1 1730139222 installed <13>Dec 25 04:39:39 rpmi: swig-1:4.1.1-alt8 sisyphus+339194.200.2.1 1706442289 installed <13>Dec 25 04:39:39 rpmi: rapidjson-devel-1.1.0-alt8.git473553bd sisyphus+331050.100.2.2 1696521943 installed <13>Dec 25 04:39:39 rpmi: libxml2-devel-1:2.12.9-alt1 sisyphus+355784.100.1.1 1724333686 installed <13>Dec 25 04:39:40 rpmi: eigen3-3.4.0-alt2.1 sisyphus+340675.200.1.1 1707908237 installed Building target platforms: x86_64 Building for target x86_64 Wrote: /usr/src/in/nosrpm/openbabel-3.1.1-alt4.1.nosrc.rpm (w1.gzdio) Installing openbabel-3.1.1-alt4.1.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.40778 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf openbabel-3.1.1 + echo 'Source #0 (openbabel-3.1.1.tar):' Source #0 (openbabel-3.1.1.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/openbabel-3.1.1.tar + cd openbabel-3.1.1 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #0 (openbabel-3.1.1-alt4.1.patch):' Patch #0 (openbabel-3.1.1-alt4.1.patch): + /usr/bin/patch -p1 patching file .gear/rules patching file .gear/tags/2806ab0ef7445a427f7cc4706455d7988262adcc patching file .gear/tags/list patching file .github/config.yml patching file .github/workflows/build_cmake.yml patching file .github/workflows/misspell-fixer.yml patching file CMakeLists.txt patching file OpenBabel3Config.cmake.in patching file OpenBabel3ConfigVersion.cmake.in patching file cmake/modules/Findcoordgen.cmake patching file data/CMakeLists.txt patching file data/atomtyp.h patching file data/bondtyp.h patching file data/genheaders.sh patching file data/logp.txt patching file data/phmodeldata.h patching file data/resdata.h patching file data/splash.png patching file data/torlib.h patching file data/types.h patching file doc/examples/obconformersearch_default.cpp patching file doc/images/SPshapes.png patching file doc/images/cistrans.png patching file doc/images/energyconformerscore.png patching file doc/images/getcisref.png patching file doc/images/gettransref.png patching file doc/images/rmsdconformerscore.png patching file doc/images/spectrophore_cage.png patching file doc/images/squareplanar.png patching file doc/images/tetrahedral.png patching file doc/images/tetranonplanar.png patching file doc/images/tetraplanar.png patching file doc/splash.png patching file include/openbabel/conformersearch.h patching file include/openbabel/forcefield.h patching file include/openbabel/generic.h patching file include/openbabel/mol.h patching file include/openbabel/obutil.h patching file include/openbabel/residue.h patching file include/openbabel/rotor.h patching file include/openbabel/spectrophore.h patching file include/openbabel/stereo/stereo.h patching file include/openbabel/stereo/tetraplanar.h patching file include/openbabel/typer.h patching file openbabel.spec patching file openbabel.watch patching file scripts/CMakeLists.txt patching file scripts/openbabel-R.i patching file scripts/openbabel-csharp.i patching file scripts/openbabel-java.i patching file scripts/openbabel-mono.i patching file scripts/openbabel-perl.i patching file scripts/openbabel-php.i patching file scripts/openbabel-python.i patching file scripts/openbabel-ruby.i patching file scripts/python/openbabel/pybel.py patching file scripts/python/setup.py patching file src/CMakeLists.txt patching file src/conformersearch.cpp patching file src/data.cpp patching file src/doxygen_pages.cpp patching file src/fingerprints/finger3.cpp patching file src/forcefields/forcefielduff.cpp patching file src/formats/MCDLformat.cpp patching file src/formats/cifformat.cpp patching file src/formats/copyformat.cpp patching file src/formats/fastsearchformat.cpp patching file src/formats/fingerprintformat.cpp patching file src/formats/gaussformat.cpp patching file src/formats/getinchi.cpp patching file src/formats/pngformat.cpp patching file src/formats/smilesformat.cpp patching file src/formats/svgformat.cpp patching file src/formats/textformat.cpp patching file src/formats/xtcformat.cpp patching file src/formats/yasaraformat.cpp patching file src/kekulize.cpp patching file src/math/spacegroup.cpp patching file src/mcdlutil.cpp patching file src/mol.cpp patching file src/obiter.cpp patching file src/obmolecformat.cpp patching file src/ops/conformer.cpp patching file src/parsmart.cpp patching file src/residue.cpp patching file src/spectrophore.cpp patching file src/tautomer.cpp patching file src/typer.cpp patching file test/CMakeLists.txt patching file test/cifspacegrouptest.cpp patching file test/files/alias.png patching file test/files/aromatics.png patching file test/fuzz/fuzz_obconversion.cpp patching file test/iterators.cpp patching file test/residue.cpp patching file test/smartstest.cpp patching file test/testbindings.py patching file test/testdistgeom.py patching file tools/obrms.cpp patching file tools/obthermo.cpp + sed -i 's/dist\(-packages\)/site\1/' scripts/CMakeLists.txt + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.93983 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd openbabel-3.1.1 + mkdir -p x86_64-alt-linux + cmake -DCMAKE_SKIP_INSTALL_RPATH:BOOL=yes '-DCMAKE_C_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto' '-DCMAKE_CXX_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto' '-DCMAKE_Fortran_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto' -DCMAKE_INSTALL_PREFIX=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_DESTINATION=lib64 -DLIB_SUFFIX=64 -S . -B x86_64-alt-linux -DWITH_MAEPARSER:BOOL=OFF -DWITH_COORDGEN:BOOL=OFF -DBUILD_GUI:BOOL=ON -DRUN_SWIG=ON -DPYTHON_BINDINGS:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Using included inchi library. Package liblzma was not found in the pkg-config search path. Perhaps you should add the directory containing `liblzma.pc' to the PKG_CONFIG_PATH environment variable Package 'liblzma', required by 'libxml-2.0', not found Package liblzma was not found in the pkg-config search path. Perhaps you should add the directory containing `liblzma.pc' to the PKG_CONFIG_PATH environment variable Package 'liblzma', required by 'libxml-2.0', not found Package liblzma was not found in the pkg-config search path. Perhaps you should add the directory containing `liblzma.pc' to the PKG_CONFIG_PATH environment variable Package 'liblzma', required by 'libxml-2.0', not found Package liblzma was not found in the pkg-config search path. Perhaps you should add the directory containing `liblzma.pc' to the PKG_CONFIG_PATH environment variable Package 'liblzma', required by 'libxml-2.0', not found -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.12.9") -- Found ZLIB: /usr/lib64/libz.so (found version "1.3.1") -- Found wxWidgets: -L/usr/lib64;-pthread;;;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.6") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success CMake Warning (dev) at CMakeLists.txt:299 (exec_program): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success -- Use std::shared_ptr in memory CMake Warning (dev) at CMakeLists.txt:358 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Boost: missing: program_options (found /usr/lib64/cmake/Boost-1.86.0/BoostConfig.cmake (found version "1.86.0")) -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") CMake Warning (dev) at CMakeLists.txt:474 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib64/cmake/Boost-1.86.0/BoostConfig.cmake (found version "1.86.0") found components: filesystem iostreams unit_test_framework -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include -- Checking for module 'cairo' -- Found cairo, version 1.18.2 Package bzip2 was not found in the pkg-config search path. Perhaps you should add the directory containing `bzip2.pc' to the PKG_CONFIG_PATH environment variable Package 'bzip2', required by 'freetype2', not found Package bzip2 was not found in the pkg-config search path. Perhaps you should add the directory containing `bzip2.pc' to the PKG_CONFIG_PATH environment variable Package 'bzip2', required by 'freetype2', not found Package bzip2 was not found in the pkg-config search path. Perhaps you should add the directory containing `bzip2.pc' to the PKG_CONFIG_PATH environment variable Package 'bzip2', required by 'freetype2', not found Package bzip2 was not found in the pkg-config search path. Perhaps you should add the directory containing `bzip2.pc' to the PKG_CONFIG_PATH environment variable Package 'bzip2', required by 'freetype2', not found -- Found Cairo: /usr/lib64/libcairo.so -- Cairo found. PNG output will be supported. CMake Warning (dev) at src/CMakeLists.txt:6 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib64/cmake/Boost-1.86.0/BoostConfig.cmake (found suitable version "1.86.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE CMake Warning (dev) at tools/CMakeLists.txt:6 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Boost: missing: program_options (found /usr/lib64/cmake/Boost-1.86.0/BoostConfig.cmake (found version "1.86.0")) -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built Problem opening /proc/meminfo CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): test/CMakeLists.txt:226 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found version "3.12.8") CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): test/CMakeLists.txt:250 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Found SWIG: /usr/bin/swig (found version "4.1.1") -- Found SWIG: /usr/bin/swig (found suitable version "4.1.1", minimum required is "2.0") CMake Warning (dev) at scripts/CMakeLists.txt:45 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at scripts/CMakeLists.txt:54 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonLibs: /usr/lib64/libpython3.12.so (found version "3.12.8") -- Python bindings will be compiled -- Configuring done (4.7s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS INCLUDE_INSTALL_DIR LIB_DESTINATION SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux + cmake --build x86_64-alt-linux --verbose --parallel 8 Change Dir: '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j8 gmake: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/cmake -S/usr/src/RPM/BUILD/openbabel-3.1.1 -B/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux --check-build-system CMakeFiles/Makefile.cmake 0 gmake: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake: Entering directory 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-I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.c.o -MF CMakeFiles/inchi.dir/ichicano.c.o.d -o CMakeFiles/inchi.dir/ichicano.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichicano.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL 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'/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 1%] Generating spacegroups.h cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data && /usr/src/RPM/BUILD/openbabel-3.1.1/data/bin2hex.pl /usr/src/RPM/BUILD/openbabel-3.1.1/data/space-groups.txt SpaceGroupsData SpaceGroupsData > spacegroups.h gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include 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-I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.c.o -MF CMakeFiles/inchi.dir/ichirvr3.c.o.d -o CMakeFiles/inchi.dir/ichirvr3.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichirvr3.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL 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src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.c.o -MF CMakeFiles/inchi.dir/ikey_dll.c.o.d -o CMakeFiles/inchi.dir/ikey_dll.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ikey_dll.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichister.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo 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/usr/src/RPM/BUILD/openbabel-3.1.1/src/data_utilities.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT 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-I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/descriptor.cpp.o -MF CMakeFiles/openbabel.dir/descriptor.cpp.o.d -o CMakeFiles/openbabel.dir/descriptor.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptor.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptor.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptor.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/canon.cpp.o -MF CMakeFiles/openbabel.dir/canon.cpp.o.d -o CMakeFiles/openbabel.dir/canon.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/canon.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include 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/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF CMakeFiles/openbabel.dir/builder.cpp.o.d -o CMakeFiles/openbabel.dir/builder.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/builder.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/builder.cpp:31: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/builder.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/builder.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -MF CMakeFiles/openbabel.dir/fingerprint.cpp.o.d -o CMakeFiles/openbabel.dir/fingerprint.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprint.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprint.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprint.cpp:21: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data.cpp.o -MF CMakeFiles/openbabel.dir/data.cpp.o.d -o CMakeFiles/openbabel.dir/data.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/data.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/grid.cpp.o -MF CMakeFiles/openbabel.dir/grid.cpp.o.d -o CMakeFiles/openbabel.dir/grid.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/grid.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/grid.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:55:18: warning: 'virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)' was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:123:10: note: by 'void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)' 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/graphsym.cpp.o -MF CMakeFiles/openbabel.dir/graphsym.cpp.o.d -o CMakeFiles/openbabel.dir/graphsym.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/graphsym.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/griddata.cpp.o -MF CMakeFiles/openbabel.dir/griddata.cpp.o.d -o CMakeFiles/openbabel.dir/griddata.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/griddata.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/generic.h:31, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/griddata.cpp:25: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:228:32: warning: 'virtual const std::string& OpenBabel::OBGenericData::GetValue() const' was hidden [-Woverloaded-virtual=] 228 | virtual const std::string &GetValue() const | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:76:12: note: by 'OpenBabel::OBGridData::GetValue' 76 | double GetValue (vector3 pos) const; | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/griddata.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:55:18: warning: 'virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)' was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:123:10: note: by 'void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)' 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/generic.cpp.o -MF CMakeFiles/openbabel.dir/generic.cpp.o.d -o CMakeFiles/openbabel.dir/generic.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/generic.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/forcefield.cpp.o -MF CMakeFiles/openbabel.dir/forcefield.cpp.o.d -o CMakeFiles/openbabel.dir/forcefield.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/set:62, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:34: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:55:18: warning: 'virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)' was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:123:10: note: by 'void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)' 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:26: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:228:32: warning: 'virtual const std::string& OpenBabel::OBGenericData::GetValue() const' was hidden [-Woverloaded-virtual=] 228 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:35: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:76:12: note: by 'OpenBabel::OBGridData::GetValue' 76 | double GetValue (vector3 pos) const; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:391:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 391 | if (_ignoreAtom == a) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:393:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 393 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:403:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 403 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:413:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 413 | if (_ignoreAtom == d) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintType(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:665:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 665 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'double OpenBabel::OBFFConstraints::GetConstraintValue(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:673:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 673 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:681:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 681 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:689:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 689 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:697:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 697 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:705:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 705 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBForceField::FastRotorSearch(bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1353:34: warning: array subscript has type 'char' [-Wchar-subscripts] 1353 | num_permutations = factorial[num_rotors_to_permute]; | ^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1357:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1357 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1370 | for (int i=0; i >&, std::vector, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1571:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 1571 | if (j == rotorKey[i]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1590:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 1590 | if (j == rotorKey[i]) gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe 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-I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/matrix.cpp.o -MF CMakeFiles/openbabel.dir/matrix.cpp.o.d -o CMakeFiles/openbabel.dir/matrix.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/matrix.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/kekulize.cpp.o -MF CMakeFiles/openbabel.dir/kekulize.cpp.o.d -o CMakeFiles/openbabel.dir/kekulize.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/kekulize.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/kekulize.cpp: In function 'bool OpenBabel::NeedsDoubleBond(OBAtom*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/kekulize.cpp:94:15: warning: unused variable 'nbr' [-Wunused-variable] 94 | OBAtom *nbr = bond->GetNbrAtom(atom); | ^~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 12%] Building CXX object 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/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/op.cpp.o -MF CMakeFiles/openbabel.dir/op.cpp.o.d -o CMakeFiles/openbabel.dir/op.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/op.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/op.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ 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-DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o CMakeFiles/openbabel.dir/obconversion.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp:48: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp:37: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN 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/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obiter.cpp.o -MF CMakeFiles/openbabel.dir/obiter.cpp.o.d -o CMakeFiles/openbabel.dir/obiter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder] 375 | OBMol *_parent; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder] 374 | OBRing *_ptr; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp:1022:3: warning: when initialized here [-Wreorder] 1022 | OBMolRingIter::OBMolRingIter(OBMol *mol): _parent(mol), _ptr(nullptr) | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder] 375 | OBMol *_parent; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder] 374 | OBRing *_ptr; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp:1032:3: warning: when initialized here [-Wreorder] 1032 | OBMolRingIter::OBMolRingIter(OBMol &mol): _parent(&mol), _ptr(nullptr) | ^~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/plugin.cpp.o -MF CMakeFiles/openbabel.dir/plugin.cpp.o.d -o CMakeFiles/openbabel.dir/plugin.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/plugin.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/plugin.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rand.cpp.o -MF CMakeFiles/openbabel.dir/rand.cpp.o.d -o CMakeFiles/openbabel.dir/rand.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/rand.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/rand.cpp:428:15: warning: 'void OpenBabel::GenerateSequence(unsigned int, unsigned int, unsigned int, unsigned int)' defined but not used [-Wunused-function] 428 | static void GenerateSequence( unsigned int p, unsigned int m, | ^~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/phmodel.cpp.o -MF CMakeFiles/openbabel.dir/phmodel.cpp.o.d -o CMakeFiles/openbabel.dir/phmodel.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/phmodel.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/parsmart.cpp.o -MF CMakeFiles/openbabel.dir/parsmart.cpp.o.d -o CMakeFiles/openbabel.dir/parsmart.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp: In function 'int OpenBabel::CreateAtom(Pattern*, AtomExpr*, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp:446:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] 446 | int index,size; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp: In function 'int OpenBabel::CreateBond(Pattern*, BondExpr*, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp:478:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] 478 | int index,size; | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -MF CMakeFiles/openbabel.dir/pointgroup.cpp.o.d -o CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::establish_pairs(SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:267:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 267 | if( elem->transform[i] >= _mol->NumAtoms() ){ /* No symmetric atom yet */ | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::check_transform_order(SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:311:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 311 | if( elem->transform[i] == i ) /* Identity transform is Ok for any order */ | ~~~~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:315:34: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 315 | if( elem->transform[j] == i ) | ~~~~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::same_transform(SYMMETRY_ELEMENT*, SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:358:31: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 358 | if( b->transform[j] != i ) | ~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'OpenBabel::OBPointGroup::Symbol OpenBabel::OBPointGroup::IdentifyPointGroupSymbol(double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:1958:37: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1958 | || d->NormalAxesCounts[2] >= maxAxis) { // Are there the perpendicular C2 axes? | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:1961:28: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1961 | if (d->PlanesCount >= maxAxis + 1) { // Likely Dnh | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:1986:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1986 | else if (d->PlanesCount == maxAxis) { // Likely Dnd | ~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2088:29: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 2088 | else if (d->PlanesCount >= maxAxis) { // Cnv | ~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'void OpenBabel::OBPointGroup::Symmetrize(OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2175:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 2175 | for (unsigned int i = 0; i < d->PlanesCount; i++) | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2182:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 2182 | for (unsigned int i = 0; i < d->NormalAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2189:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 2189 | for (unsigned int i = 0; i < d->ImproperAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:423:5: warning: multi-line comment [-Wcomment] 423 | // / \ | ^ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TSimpleMolecule::threeBondResolve(int, int, double&, double&, OpenBabel::neighbourlist*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:968:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 968 | for (i=0; i&, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:1471:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1471 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1478 | } while (k&, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2009:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2009 | for (j=0; j0) atDef=atDef+1; | ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2019:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2019 | if (cN>=0) if (maxAtDef==atomCycle[cN].size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2034:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2034 | for (j=1; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2040 | for (j=0;currNumDef < atomClean && j&, std::vector, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2107:98: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2107 | if (baseCycle>0) for (i=0; i, std::vector, int, int&, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2238:67: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2238 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2240 | for (k=0; k::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2264 | for (j=1; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2575 | if ((nb + i) > dsATN.size()) nb=dsATN.size()-i; // Check added to avoid segfault below, see issue #1851 | ~~~~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::flipSmall(int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2985:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2985 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3024 | for (i=0; i, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3103 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3103:75: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3103 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3105:26: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3105 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3105:75: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3105 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'bool OpenBabel::compareAtoms(int, int, std::vector*>)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3127:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3127 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3127:63: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3127 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::makeEquivalentList(std::vector&, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3291:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3291 | for (j=0; jsize(); j++) (*lL)[i]=0; | ~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3299:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3299 | for (i=0; i*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3309 | for (int i=0; i&, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3325:13: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const __gnu_cxx::__alloc_traits, int>::value_type' {aka 'const int'} [-Wsign-compare] 3325 | if (l <= maxValues[i]) { /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'int OpenBabel::TSimpleMolecule::correctOverlapped()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3374:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3374 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3427 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3437 | for (i=0; i*, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3540:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 3540 | for (i=0; isize(); i++) if (i != index) { | ~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4216:19: warning: variable 'nBondsOld' set but not used [-Wunused-but-set-variable] 4216 | int nAtomsOld,nBondsOld,naDef1,naDef,i; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4217:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4217:15: warning: variable 'test1' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4217:21: warning: variable 'test2' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4219:40: warning: variable 'xCenter' set but not used [-Wunused-but-set-variable] 4219 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4219:48: warning: variable 'yCenter' set but not used [-Wunused-but-set-variable] 4219 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'OpenBabel::TEditedMolecule* OpenBabel::TEditedMolecule::extractFragment(int, std::vector*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4410:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4410 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4410:71: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4410 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4415:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4415 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4418 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4591 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4596 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4601 | for (i=0; i*, std::vector*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4636:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 4636 | if (qEnumerator->size() != nAtoms()) qEnumerator->resize(nAtoms()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4637:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4637 | for (i=0; isize(); i++) (*qEnumerator)[i]=i; | ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4666:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4666 | for (j=0; jsize(); j++) { | ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TEditedMolecule::fragmentSearch(OpenBabel::TEditedMolecule*, std::vector*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4853:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4853 | if (molecule1->listarSize()>aSTested.size()) aSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4854:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4854 | if (molecule1->listarSize()>bSTested.size()) bSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4855:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4855 | if (molecule1->listarSize()>queryQHydr.size()) queryQHydr.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4856:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4856 | if (molecule1->listarSize()>queryAQTested.size()) queryAQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4857:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4857 | if (molecule1->listarSize()>queryBQTested.size()) queryBQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4858:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4858 | if (molecule1->listarSize()>queryCurrentAssignment.size()) queryCurrentAssignment.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4859:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4859 | if (this->listarSize()>queryAQTested.size()) queryAQTested.resize(this->listarSize()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5032:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; | ^ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4840:9: warning: variable 'cycleNumber' set but not used [-Wunused-but-set-variable] 4840 | int cycleNumber; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TemplateRedraw::internalBondsPresent(OpenBabel::TEditedMolecule*, OpenBabel::TSimpleMolecule*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5201:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 5201 | for (i=0; inAtoms(); i++) aList[mQuery->queryAQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5202:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 5202 | for (i=0; inBonds(); i++) bList[mQuery->queryBQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TemplateRedraw::rotateBondVertically(OpenBabel::TSimpleMolecule*, std::vector, int, double, double, double&, double&, double&, double&, double&, double&, int&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5232:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5232 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5277 | for (i=0; i*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5311:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5311 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5328:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5328 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5358 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5368 | for (i=0; i*, OpenBabel::PartFragmentDefinition&, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5399:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5399 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5412:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5412 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5428:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5428 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'int OpenBabel::TemplateRedraw::coordinatesPrepare(OpenBabel::TEditedMolecule&, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5667:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5667 | for (i=kk; ifragmentSearch(&sm,nullptr)) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5715:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5715 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5718 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5726 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5798 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5828 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5894 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5906 | for (frCount=0; frCount::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5922 | for (frCount=0; frCount::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5945 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5960 | for (frCount=0; frCount::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6000 | for (i=0;i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6007 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6026 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6034 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6035 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6036 | for (i=0; i::size_type' {aka 'const long unsigned int'} [-Wsign-compare] 6358 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6359:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6359 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'std::string OpenBabel::getAtomMCDL(OBMol*, int, std::vector, std::vector, std::vector, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6546:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6546 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6591 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6593:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6593 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) n++; | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6599:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6599 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) { | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6609:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6609 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-1; | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6612:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6612 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-2; | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6623:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6623 | if (k == 1) for (i=0; i >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6632 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6632 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6642 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'std::string OpenBabel::getBondMCDL(OBMol*, int, int, std::vector, std::vector, int (*)[4], std::vector, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6843:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6843 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6845:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6845 | for (j=i+1; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6850 | for (j=i+1; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6864 | for (j=i+1; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6872 | for (j=i+1; j >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6877 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6877 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6887 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6680:26: warning: variable 'n4' set but not used [-Wunused-but-set-variable] 6680 | int i,j,n,m,n1,n2,n3,n4,an1,an2,an3,an4,k; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'void OpenBabel::implementAtomStereo(std::vector&, std::vector&, std::vector&, std::vector, std::vector, int, int, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6960:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6960 | if (n1 < (astereo.length()-1)) astereo=astereo.substr(n1+1); else astereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'void OpenBabel::implementBondStereo(std::vector, std::vector, std::vector&, std::vector&, int, int, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7024:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7024 | if (n1 < (bstereo.length()-1)) bstereo=bstereo.substr(n1+1); else bstereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'int OpenBabel::groupRedraw(OBMol*, int, int, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7159:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7159 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7167 | for (int i=0; i&, int&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7209:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7209 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7212:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7212 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7233:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7233 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7236:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7236 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/query.cpp.o -MF CMakeFiles/openbabel.dir/query.cpp.o.d -o CMakeFiles/openbabel.dir/query.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/query.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/query.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/bond.h:31, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/query.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/query.cpp:25: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -MF CMakeFiles/openbabel.dir/reactionfacade.cpp.o.d -o CMakeFiles/openbabel.dir/reactionfacade.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/reactionfacade.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/reactionfacade.cpp: In member function 'void OpenBabel::OBReactionFacadePrivate::FindComponents()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/reactionfacade.cpp:122:15: warning: unused variable 'atm' [-Wunused-variable] 122 | OBAtom* atm = &*atom; | ^~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/residue.cpp.o -MF CMakeFiles/openbabel.dir/residue.cpp.o.d -o CMakeFiles/openbabel.dir/residue.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/residue.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mol.cpp.o -MF CMakeFiles/openbabel.dir/mol.cpp.o.d -o CMakeFiles/openbabel.dir/mol.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp: In member function 'unsigned int OpenBabel::OBMol::NumHvyAtoms() const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp:809:36: warning: unnecessary parentheses in declaration of 'i' [-Wparentheses] 809 | vector::const_iterator(i); | ^~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp:809:36: note: remove parentheses 809 | vector::const_iterator(i); | ^~~ | - - /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp: In member function 'unsigned int OpenBabel::OBMol::GetTotalSpinMultiplicity()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp:1221:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1221 | if (chg % 2 != unpaired_electrons %2) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall 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-isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tokenst.cpp.o -MF CMakeFiles/openbabel.dir/tokenst.cpp.o.d -o CMakeFiles/openbabel.dir/tokenst.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/tokenst.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotamer.cpp.o -MF CMakeFiles/openbabel.dir/rotamer.cpp.o.d -o CMakeFiles/openbabel.dir/rotamer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp: In member function 'void OpenBabel::OBRotamerList::AddRotamer(std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:410:11: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 410 | while (angle < 0.0) | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:412:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 412 | while (angle > 360.0) | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp: In member function 'bool OpenBabel::OBRotamerList::SetCurrentCoordinates(OpenBabel::OBMol&, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:543:11: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 543 | while (angle < 0.0) | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:545:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 545 | while (angle > 360.0) | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/ring.cpp.o -MF CMakeFiles/openbabel.dir/ring.cpp.o.d -o CMakeFiles/openbabel.dir/ring.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ring.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tautomer.cpp.o -MF CMakeFiles/openbabel.dir/tautomer.cpp.o.d -o CMakeFiles/openbabel.dir/tautomer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/tautomer.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/tautomer.cpp:26: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/tautomer.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/tautomer.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotor.cpp.o -MF CMakeFiles/openbabel.dir/rotor.cpp.o.d -o CMakeFiles/openbabel.dir/rotor.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotor.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/transform.cpp.o -MF CMakeFiles/openbabel.dir/transform.cpp.o.d -o CMakeFiles/openbabel.dir/transform.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/transform.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/transform.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/transform.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -MF CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o.d -o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/dlhandler_unix.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:286:28: warning: 'virtual const char* OpenBabel::OBBase::GetTitle(bool) const' was hidden [-Woverloaded-virtual=] 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/reaction.h:99:15: note: by 'std::string OpenBabel::OBReaction::GetTitle() const' 99 | std::string GetTitle() const { return _title; } | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:287:21: warning: 'virtual void OpenBabel::OBBase::SetTitle(const char*)' was hidden [-Woverloaded-virtual=] 287 | virtual void SetTitle(const char *) {} | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/reaction.h:101:8: note: by 'void OpenBabel::OBReaction::SetTitle(const std::string&)' 101 | void SetTitle(const std::string& title) { _title=title; } | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF CMakeFiles/openbabel.dir/typer.cpp.o.d -o CMakeFiles/openbabel.dir/typer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/typer.cpp gmake[2]: Leaving directory 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initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:75:12: warning: 'OpenBabel::SVGPainter::m_isFillcolor' will be initialized after [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:74:32: warning: 'std::set >* OpenBabel::SVGPainter::m_Gradients' [-Wreorder] 74 | std::set *m_Gradients; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o cd 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src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -MF CMakeFiles/openbabel.dir/stereo/stereo.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/stereo.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/tetranonplanar.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -MF CMakeFiles/openbabel.dir/depict/depict.cpp.o.d -o CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp: In function 'unsigned int OpenBabel::GetAtomSymClass(OBAtom*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:284:11: warning: unused variable 'nclasses' [-Wunused-variable] 284 | int nclasses = end_pos - copy_sym.begin(); | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp: In member function 'virtual void OpenBabel::OBDepictPrivate::DrawAtomLabel(const std::string&, int, const OpenBabel::vector3&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1024:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable] 1024 | OBFontMetrics metrics = painter->GetFontMetrics(str); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1029:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable] 1029 | OBFontMetrics metrics = painter->GetFontMetrics(subscript); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp: In member function 'void OpenBabel::OBDepictPrivateBallAndStick::DrawAromaticRingBond(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, const OpenBabel::vector3&, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1238:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] 1238 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1238:100: note: add parentheses around 'sizeof (double)' to silence this warning 1238 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ^~~~~~~~~~~~~~ | ( ) /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1237:24: note: array 'dashpattern' declared here 1237 | static const float dashpattern[] = {5., 5.}; | ^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -MF CMakeFiles/openbabel.dir/math/spacegroup.cpp.o.d -o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/spacegroup.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o CMakeFiles/openbabel.dir/confsearch.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/atom.h:30, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp: In constructor 'OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:134:66: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 134 | vec.erase(std::remove_if(vec.begin(), vec.end(), std::bind2nd(std::less(), (cutoff + 0.1) )), vec.end()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_function.h:1435: /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp: In member function 'bool OpenBabel::OBDiversePoses::AddPose(std::vector, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:189:14: warning: unused variable 'min_rmsd' [-Wunused-variable] 189 | double min_rmsd = DBL_MAX; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp: In member function 'int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:444:77: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 444 | transform(_energies.begin(), _energies.end(), _energies.begin(), bind2nd(std::plus(), energy_offset)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -MF CMakeFiles/openbabel.dir/conformersearch.cpp.o.d -o CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/conformersearch.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:250:12: warning: unused variable 'score' [-Wunused-variable] 250 | double score = ff->Energy(false); // no gradients | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'bool OpenBabel::OBConformerSearch::Setup(const OpenBabel::OBMol&, int, int, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:351:23: warning: variable 'end_it' set but not used [-Wunused-but-set-variable] 351 | OBRotorIterator end_it = m_rotorList.EndRotors(); | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::local_opt()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:789:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 789 | for (i = 1; i <= m_rotorList.Size(); ++i, rotor = m_rotorList.NextRotor(ri)) | ~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::reproduce(OpenBabel::RotorKey&, OpenBabel::RotorKey&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:850:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 850 | if (iniche > -1) | ~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::share_fitness()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1005:37: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1005 | if ((dynamic_niches.size () < nb_niches) && (dynamic_niches.size () %2)) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1020:30: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1020 | if (dist < min_dist ) | ~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1033:18: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 1033 | if (imax == -1) | ~~~~~^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1050:40: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1050 | if (dynamic_niches.size () < nb_niches) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:976:10: warning: unused variable 'flag_niched' [-Wunused-variable] 976 | bool flag_niched = false; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'double OpenBabel::OBConformerSearch::sharing_generation()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1139:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1139 | while (ninsert < ((half_pop * 2) / 3)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1148:24: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1148 | if (iround < imax) | ~~~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1156:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1156 | if (ninsert >= half_pop) | ~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1181:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1181 | while (ninsert < half_pop) | ~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1105:23: warning: unused variable 'lowest' [-Wunused-variable] 1105 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1105:37: warning: unused variable 'highest' [-Wunused-variable] 1105 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o cd 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directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/squareplanar.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT 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-isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -MF CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/cistrans.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -MF CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp:25: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -MF CMakeFiles/openbabel.dir/stereo/facade.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/facade.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -MF CMakeFiles/openbabel.dir/stereo/perception.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'bool OpenBabel::TetStereoToWedgeHash(OBMol&, std::map&, std::map&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2795:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 2795 | for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) | ^~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2951:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 2951 | return true; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OBMol&, OBStereo::Ref)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2973:16: warning: 'template class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ^~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_function.h:1435, from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/stereo/stereo.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/stereo/tetranonplanar.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/stereo/tetrahedral.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:26: /usr/include/c++/14/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2973:88: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OBMol&, OBStereo::Ref, OBStereo::Ref)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:3005:16: warning: 'template class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ^~~~~~~~~ /usr/include/c++/14/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:3005:93: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/align.cpp.o -MF CMakeFiles/openbabel.dir/math/align.cpp.o.d -o CMakeFiles/openbabel.dir/math/align.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/align.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/distgeom.cpp.o -MF CMakeFiles/openbabel.dir/distgeom.cpp.o.d -o CMakeFiles/openbabel.dir/distgeom.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:54: warning: ignoring '#pragma warning ' [-Wunknown-pragmas] 54 | #pragma warning(disable : 4244) // warning C4244: '=' : conversion from 'double' to 'float', possible loss of data /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:55: warning: ignoring '#pragma warning ' [-Wunknown-pragmas] 55 | #pragma warning(disable : 4305) // warning C4305: '*=' : truncation from 'double' to 'float' /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:619:3: warning: multi-line comment [-Wcomment] 619 | // \ | ^ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:38: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/distgeom.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'bool OpenBabel::OBDistanceGeometry::generateInitialCoords()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1089:16: warning: unused variable 'lb' [-Wunused-variable] 1089 | double lb = _d->GetLowerBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1090:16: warning: unused variable 'ub' [-Wunused-variable] 1090 | double ub = _d->GetUpperBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'bool OpenBabel::OBDistanceGeometry::firstMinimization()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1136:16: warning: unused variable 'lb' [-Wunused-variable] 1136 | double lb = _d->GetLowerBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1137:16: warning: unused variable 'ub' [-Wunused-variable] 1137 | double ub = _d->GetUpperBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1115:9: warning: unused variable 'niter' [-Wunused-variable] 1115 | int niter = solver.minimize(fun, _coord, fx); | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'bool OpenBabel::OBDistanceGeometry::minimizeFourthDimension()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1160:9: warning: unused variable 'niter' [-Wunused-variable] 1160 | int niter = solver.minimize(fun, _coord, fx); | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'double OpenBabel::DistGeomFunc::operator()(const Eigen::VectorXd&, Eigen::VectorXd&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1325:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::Index' {aka 'long int'} [-Wsign-compare] 1325 | for (size_t i=0; iaalloc]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function 'operator new []' declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp:463:47: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 463 | pat->atom = new AtomSpec[pat->aalloc]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function 'operator new []' declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/openbabel.dir/link.d -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,libopenbabel.so.7 -o ../lib64/libopenbabel.so.7.0.0 CMakeFiles/openbabel.dir/alias.cpp.o CMakeFiles/openbabel.dir/atom.cpp.o CMakeFiles/openbabel.dir/base.cpp.o CMakeFiles/openbabel.dir/bitvec.cpp.o CMakeFiles/openbabel.dir/bond.cpp.o CMakeFiles/openbabel.dir/bondtyper.cpp.o CMakeFiles/openbabel.dir/builder.cpp.o CMakeFiles/openbabel.dir/canon.cpp.o CMakeFiles/openbabel.dir/chains.cpp.o 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CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o CMakeFiles/openbabel.dir/math/transform3d.cpp.o CMakeFiles/openbabel.dir/math/vector3.cpp.o CMakeFiles/openbabel.dir/math/align.cpp.o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o CMakeFiles/openbabel.dir/stereo/perception.cpp.o CMakeFiles/openbabel.dir/stereo/facade.cpp.o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -lm -ldl -lz cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/cmake -E cmake_symlink_library ../lib64/libopenbabel.so.7.0.0 ../lib64/libopenbabel.so.7 ../lib64/libopenbabel.so gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory 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/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/build /usr/bin/gmake -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/build /usr/bin/gmake -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build /usr/bin/gmake -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build /usr/bin/gmake -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build /usr/bin/gmake -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build /usr/bin/gmake -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 22%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 22%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addfilename.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addfilename.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addfilename.cpp:18: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 23%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eem.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eem.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eem.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eem.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 22%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger2.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger2.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger2.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 24%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addinindex.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addinindex.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addinindex.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 24%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmol2format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o CMakeFiles/mol2format.dir/mol2format.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp: In member function 'virtual bool OpenBabel::MOL2Format::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:422:22: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 422 | if(aid <= mol.NumAtoms()) | ~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp: In member function 'virtual int OpenBabel::MOL2Format::SkipObjects(int, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:785:10: warning: unused variable 'ch' [-Wunused-variable] 785 | char ch = ifs.peek(); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:86:15: warning: 'bool OpenBabel::IsThiocarboxylSulfur(OBAtom*)' defined but not used [-Wunused-function] 86 | static bool IsThiocarboxylSulfur(OBAtom* queryatom) | ^~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 25%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/gasteiger.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/gasteiger.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addpolarh.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addpolarh.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addpolarh.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 26%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp: In member function 'virtual bool OpenBabel::PatternFP::GetFingerprint(OpenBabel::OBBase*, std::vector&, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp:109:13: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 109 | while(n < _bitcount) | ~~^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 22%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp:21: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 26%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/groupcontrib.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/groupcontrib.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/groupcontrib.cpp:33: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/groupcontrib.cpp:25: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 26%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/none.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/none.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/none.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addnonpolarh.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addnonpolarh.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addnonpolarh.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 26%] Linking CXX shared module ../../lib64/mol2format.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mol2format.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mol2format.so CMakeFiles/mol2format.dir/mol2format.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 28%] Built target mol2format gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 24%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:35: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:26: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:43: /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h: In function 'unsigned int MDLValence(unsigned int, int, unsigned int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:51:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 51 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:51:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 51 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:64:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 64 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:64:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 64 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:77:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 77 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:77:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 77 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:90:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 90 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:90:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 90 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:103:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 103 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:103:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 103 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:116:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 116 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:116:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 116 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:119:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 119 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:119:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 119 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:121:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 121 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:121:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 121 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:134:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 134 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:134:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 134 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:137:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 137 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:137:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 137 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:139:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 139 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:139:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 139 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:152:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 152 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:152:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 152 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:155:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 155 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:155:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 155 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:157:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 157 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:157:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 157 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:170:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 170 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:170:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 170 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:173:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 173 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:173:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 173 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:175:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 175 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:175:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 175 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:188:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 188 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:188:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 188 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:191:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 191 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:191:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 191 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:193:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 193 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:193:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 193 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:206:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 206 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:206:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 206 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:209:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 209 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:209:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 209 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:211:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 211 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:211:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 211 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:223:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 223 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:223:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 223 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:226:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 226 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:226:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 226 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:228:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 228 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:228:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 228 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:240:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 240 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:240:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 240 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:243:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 243 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:243:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 243 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:245:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 245 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:245:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 245 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:257:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 257 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:257:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 257 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:260:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 260 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:260:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 260 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:262:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 262 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:262:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 262 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:274:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 274 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:274:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 274 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:277:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 277 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:277:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 277 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:279:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 279 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:279:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 279 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:291:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 291 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:291:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 291 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:294:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 294 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:294:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 294 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:296:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 296 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:296:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 296 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:298:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 298 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:298:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 298 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:310:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 310 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:310:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 310 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:313:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 313 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:313:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 313 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:315:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 315 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:315:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 315 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:317:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 317 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:317:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 317 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:329:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 329 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:329:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 329 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:332:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 332 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:332:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 332 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:334:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 334 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:334:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 334 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:336:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 336 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:336:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 336 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:348:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 348 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:348:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 348 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:351:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 351 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:351:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 351 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:353:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 353 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:353:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 353 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:355:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 355 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:355:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 355 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:367:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 367 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:367:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 367 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:370:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 370 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:370:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 370 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:372:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 372 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:372:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 372 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:374:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 374 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:374:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 374 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:385:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 385 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:385:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 385 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:388:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 388 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:388:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 388 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:390:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 390 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:390:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 390 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:392:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 392 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:392:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 392 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:394:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 394 | if (val <= 3) return 3; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:394:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 394 | if (val <= 3) return 3; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h: In function 'unsigned int HYDValence(unsigned int, int, unsigned int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:416:11: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 416 | if (val > impval) { | ~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp: In member function 'bool OpenBabel::MDLFormat::ReadAtomBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:1488:10: warning: unused variable 'chiralWatch' [-Wunused-variable] 1488 | bool chiralWatch=false; | ^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 27%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp:15: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 28%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/filters.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/filters.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 23%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmilesformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In constructor 'OpenBabel::OBSmilesParser::OBSmilesParser(bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:291:10: warning: 'OpenBabel::OBSmilesParser::_preserve_aromaticity' will be initialized after [-Wreorder] 291 | bool _preserve_aromaticity; | ^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:289:9: warning: 'int OpenBabel::OBSmilesParser::_rxnrole' [-Wreorder] 289 | int _rxnrole; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:318:5: warning: when initialized here [-Wreorder] 318 | OBSmilesParser(bool preserve_aromaticity=false): _preserve_aromaticity(preserve_aromaticity), _rxnrole(1) { } | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBSmilesParser::ParseSmiles(OpenBabel::OBMol&, const std::string&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:655:15: warning: variable 'atom' set but not used [-Wunused-but-set-variable] 655 | OBAtom* atom; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'int OpenBabel::OBSmilesParser::NumConnections(OpenBabel::OBAtom*, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2200:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2200 | if (idx-1 < _hcount.size() && _hcount[idx-1] > 0) | ~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2685:10: warning: variable 'symbol' set but not used [-Wunused-but-set-variable] 2685 | char symbol[10]; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2689:10: warning: unused variable 'normalValence' [-Wunused-variable] 2689 | bool normalValence = true; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2690:10: warning: unused variable 'writeExplicitHydrogen' [-Wunused-variable] 2690 | bool writeExplicitHydrogen = false; | ^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::BuildCanonTree(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::vector&, OpenBabel::OBCanSmiNode*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3139:22: warning: unused variable 'bond_order' [-Wunused-variable] 3139 | unsigned int bond_order = bond->GetBondOrder(); | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3134:20: warning: unused variable 'nbr_bond_order' [-Wunused-variable] 3134 | unsigned int nbr_bond_order = nbr_bond->GetBondOrder(); | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'std::vector OpenBabel::OBMol2Cansmi::GetCanonClosureDigits(OpenBabel::OBAtom*, OpenBabel::OBBitVec&, std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3286:11: warning: unused variable 'bo' [-Wunused-variable] 3286 | int bo = (bond1->IsAromatic())? 1 : bond1->GetBondOrder(); // CJ: why was this line added? bo is never used? | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'void OpenBabel::OBMol2Cansmi::CreateFragCansmiString(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::string&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3899:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3899 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3905 | for (int i=0; i struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/canonical.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/canonical.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 28%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/mmff94.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/mmff94.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 29%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 27%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp: In member function 'virtual bool OpenBabel::OpChangeCell::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:88:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 88 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:119:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 119 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 29%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -MF CMakeFiles/pdbformat.dir/pdbformat.cpp.o.d -o CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp:615:26: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 615 | if (origin == pUC->GetSpaceGroup()->HEXAGONAL_ORIGIN) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 29%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp: In member function 'virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp:102:36: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 102 | for ( int i = 1; i <= mol.NumAtoms(); i++) | ~~^~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delpolarh.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delpolarh.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delpolarh.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 29%] Linking CXX shared module ../lib64/plugin_fingerprints.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/plugin_fingerprints.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 30%] Built target plugin_fingerprints gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 29%] Linking CXX shared module ../lib64/plugin_descriptors.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/plugin_descriptors.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 30%] Built target plugin_descriptors gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delnonpolarh.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delnonpolarh.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delnonpolarh.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen2D.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen2D.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen2D.cpp:21: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 30%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:31: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In member function 'virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:2798:32: warning: variable 'bondtype1' set but not used [-Wunused-but-set-variable] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:2798:43: warning: variable 'bondtype2' set but not used [-Wunused-but-set-variable] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:289:40: required from here 289 | return gradients ? E_Bond() : E_Bond(); | ~~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 148 | for (int i = 0; i < _bondcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:289:58: required from here 289 | return gradients ? E_Bond() : E_Bond(); | ~~~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 148 | for (int i = 0; i < _bondcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:295:41: required from here 295 | return gradients ? E_Angle() : E_Angle(); | ~~~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 263 | for (int i = 0; i < _anglecalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:295:60: required from here 295 | return gradients ? E_Angle() : E_Angle(); | ~~~~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 263 | for (int i = 0; i < _anglecalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:301:42: required from here 301 | return gradients ? E_StrBnd() : E_StrBnd(); | ~~~~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 376 | for (int i = 0; i < _strbndcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:301:62: required from here 301 | return gradients ? E_StrBnd() : E_StrBnd(); | ~~~~~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 376 | for (int i = 0; i < _strbndcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:307:43: required from here 307 | return gradients ? E_Torsion() : E_Torsion(); | ~~~~~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 512 | for (int i = 0; i < _torsioncalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:307:64: required from here 307 | return gradients ? E_Torsion() : E_Torsion(); | ~~~~~~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 512 | for (int i = 0; i < _torsioncalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:313:39: required from here 313 | return gradients ? E_OOP() : E_OOP(); | ~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 610 | for (int i = 0; i < _oopcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:313:56: required from here 313 | return gradients ? E_OOP() : E_OOP(); | ~~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 610 | for (int i = 0; i < _oopcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:319:39: required from here 319 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 707 | for (int i = 0; i < _vdwcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:319:56: required from here 319 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 707 | for (int i = 0; i < _vdwcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:325:49: required from here 325 | return gradients ? E_Electrostatic() : E_Electrostatic(); | ~~~~~~~~~~~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 793 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:325:76: required from here 325 | return gradients ? E_Electrostatic() : E_Electrostatic(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 793 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 30%] Linking CXX shared module ../../lib64/pdbformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/pdbformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Built target pdbformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 29%] Linking CXX shared module ../../lib64/mdlformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mdlformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Built target mdlformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/fillUC.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/fillUC.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 30%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:32: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:21: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp: In instantiation of 'void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:478:37: required from 'double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = true]' 478 | i->template Compute(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.h:193:37: required from here 193 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:431:14: warning: unused variable 'ab' [-Wunused-variable] 431 | double ab[3]; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp: In instantiation of 'void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:478:37: required from 'double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = false]' 478 | i->template Compute(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.h:193:54: required from here 193 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:431:14: warning: unused variable 'ab' [-Wunused-variable] 431 | double ab[3]; | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp:31: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp:29: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp: In member function 'virtual bool OpenBabel::OpMinimize::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp:265:10: warning: unused variable 'done' [-Wunused-variable] 265 | bool done = true; | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen3d.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen3d.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/largest.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/largest.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/largest.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -MF CMakeFiles/inchiformat.dir/inchiformat.cpp.o.d -o CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:32: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp: In member function 'virtual bool OpenBabel::InChIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:193:52: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'AT_NUM' {aka 'short int'} [-Wsign-compare] 193 | if ( !(a->GetId() == ct->end || a->GetId() == stereo.neighbor[0] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:199:54: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'AT_NUM' {aka 'short int'} [-Wsign-compare] 199 | if ( !(b->GetId() == ct->begin || b->GetId() == stereo.neighbor[3] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 29%] Linking CXX shared module ../../lib64/smilesformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/smilesformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Built target smilesformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/loader.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/loader.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/loader.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/loader.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -MF CMakeFiles/inchiformat.dir/getinchi.cpp.o.d -o CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/getinchi.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 33%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/neutralize.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/neutralize.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/unique.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/unique.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/unique.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp: In member function 'virtual bool OpenBabel::OpSplit::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp:92:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 92 | if(!pConv) | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp:95:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 95 | if(pConv->IsFirstInput()) | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -MF CMakeFiles/asciiformat.dir/asciiformat.cpp.o.d -o CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/asciiformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/asciiformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/optransform.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/optransform.h:21, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/optransform.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/parsmart.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/phmodel.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/optransform.h:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp: In member function 'virtual void OpenBabel::ASCIIPainter::DrawText(double, double, const std::string&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp:118:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 118 | for (int i=0; i struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Linking CXX shared module ../../lib64/inchiformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/inchiformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.cpp.o CMakeFiles/inchiformat.dir/getinchi.cpp.o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Built target inchiformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcopyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -MF CMakeFiles/copyformat.dir/copyformat.cpp.o.d -o CMakeFiles/copyformat.dir/copyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/copyformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/copyformat.cpp:14: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/partialcharges.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/partialcharges.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Linking CXX shared module ../../lib64/copyformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/copyformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/copyformat.so CMakeFiles/copyformat.dir/copyformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Built target copyformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Linking CXX shared module ../../lib64/asciiformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/asciiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/asciiformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/asciiformat.so CMakeFiles/asciiformat.dir/asciiformat.cpp.o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 35%] Built target asciiformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/readconformers.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/readconformers.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/sort.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/sort.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/sort.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/sort.cpp:32:28: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 32 | struct Order : public std::binary_function, std::pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolreport_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/molreport.dir/molreport.cpp.o -MF CMakeFiles/molreport.dir/molreport.cpp.o.d -o CMakeFiles/molreport.dir/molreport.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/molreport.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/molreport.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 35%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -MF CMakeFiles/MNAformat.dir/MNAformat.cpp.o.d -o CMakeFiles/MNAformat.dir/MNAformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MNAformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MNAformat.cpp:31: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Linking CXX shared module ../../lib64/molreport.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molreport.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/molreport.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/molreport.so CMakeFiles/molreport.dir/molreport.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Built target molreport gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnulformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -MF CMakeFiles/nulformat.dir/nulformat.cpp.o.d -o CMakeFiles/nulformat.dir/nulformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nulformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nulformat.cpp:14: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.h:15, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/parsmart.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp:15: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp: In member function 'virtual bool OpenBabel::OpNewS::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp:303:28: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 303 | if(pmol->NumHvyAtoms() != nPatternAtoms) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Linking CXX shared module ../../lib64/nulformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/nulformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/nulformat.so CMakeFiles/nulformat.dir/nulformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Built target nulformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Linking CXX shared module ../../lib64/MNAformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/MNAformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Built target MNAformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/ophighlight.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/ophighlight.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/parsmart.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/ophighlight.cpp:16: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/xout.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/xout.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/xout.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Linking CXX shared module ../lib64/plugin_forcefields.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_forcefields.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/plugin_forcefields.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Built target plugin_forcefields gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -MF CMakeFiles/painterformat.dir/painterformat.cpp.o.d -o CMakeFiles/painterformat.dir/painterformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/painterformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/painterformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/painterformat.cpp: In member function 'virtual bool OpenBabel::PainterFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/painterformat.cpp:114:12: warning: unused variable 'ofs' [-Wunused-variable] 114 | ostream& ofs = *pConv->GetOutStream(); | ^~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -MF CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o.d -o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/commandpainter.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpovrayformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -MF CMakeFiles/povrayformat.dir/povrayformat.cpp.o.d -o CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp: In member function 'void OpenBabel::PovrayFormat::OutputHeader(std::ostream&, OpenBabel::OBMol&, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:173:12: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] 173 | size_t time_res; /* Result of strftime */ | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp: In function 'void OpenBabel::OutputCSTBonds(std::ostream&, OBMol&, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:526:78: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = char]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 526 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_function.h:1435: /usr/include/c++/14/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:587:78: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = char]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 587 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp: In member function 'virtual bool OpenBabel::PovrayFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:807:17: warning: unused variable 'title' [-Wunused-variable] 807 | const char* title = pmol->GetTitle(); | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtextformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -MF CMakeFiles/textformat.dir/textformat.cpp.o.d -o CMakeFiles/textformat.dir/textformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/textformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/textformat.cpp:14: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Linking CXX shared module ../../lib64/painterformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/painterformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/painterformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/painterformat.so CMakeFiles/painterformat.dir/painterformat.cpp.o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Built target painterformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:33: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:29: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp: In member function 'virtual bool OpenBabel::OpConformer::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:291:19: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 291 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:291:42: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 291 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dreportformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -MF CMakeFiles/reportformat.dir/reportformat.cpp.o.d -o CMakeFiles/reportformat.dir/reportformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/reportformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/reportformat.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 31%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qeq.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qeq.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qeq.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Linking CXX shared module ../../lib64/textformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/textformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/textformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/textformat.so CMakeFiles/textformat.dir/textformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Built target textformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Linking CXX shared module ../../lib64/reportformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/reportformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/reportformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/reportformat.so CMakeFiles/reportformat.dir/reportformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Built target reportformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsvgformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -MF CMakeFiles/svgformat.dir/svgformat.cpp.o.d -o CMakeFiles/svgformat.dir/svgformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp: In member function 'virtual bool OpenBabel::SVGFormat::WriteChemObject(OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp:226:42: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 226 | bool nomore = _nmax && (_objects.size()==_nmax); | ~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp:248:18: warning: unused variable 'n' [-Wunused-variable] 248 | unsigned int n=0; | ^ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp: In member function 'virtual bool OpenBabel::SVGFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp:273:8: warning: unused variable 'ret' [-Wunused-variable] 273 | bool ret = WriteSVG(pConv,_objects); | ^~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtitleformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -MF CMakeFiles/titleformat.dir/titleformat.cpp.o.d -o CMakeFiles/titleformat.dir/titleformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/titleformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/titleformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 38%] Linking CXX shared module ../../lib64/titleformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/titleformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/titleformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/titleformat.so CMakeFiles/titleformat.dir/titleformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 38%] Built target titleformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats 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../../lib64/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 38%] Built target povrayformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux 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-I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -MF CMakeFiles/pngformat.dir/pngformat.cpp.o.d -o CMakeFiles/pngformat.dir/pngformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pngformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pngformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pngformat.cpp:13: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 38%] Linking CXX shared module ../../lib64/svgformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/svgformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG 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/usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 38%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp: In member function 'void OpenBabel::OpConfab::Run(OpenBabel::OBConversion*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp:167:14: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 167 | for (; c < mol.NumConformers(); ++c) { | ~~^~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/aoforceformat.dir/build.make 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cmake_link_script CMakeFiles/pngformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/pngformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pngformat.so CMakeFiles/pngformat.dir/pngformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Built target pngformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dconfabreport_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o -MF CMakeFiles/confabreport.dir/confabreport.cpp.o.d -o CMakeFiles/confabreport.dir/confabreport.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/confabreport.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/confabreport.cpp:34: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/confabreport.cpp: In member function 'void OpenBabel::ConfabReport::WriteOutput(std::ostream&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/confabreport.cpp:129:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 129 | for (int i=1; i < binvals.size(); i++) | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/confabreport.cpp:134:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 134 | for (int i=1; i < cumbins.size(); i++) | ~~^~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opalign.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opalign.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opalign.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qtpie.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qtpie.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qtpie.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 38%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacesformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -MF CMakeFiles/acesformat.dir/acesformat.cpp.o.d -o CMakeFiles/acesformat.dir/acesformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/acesformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/acesformat.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 39%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dabinitformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -MF CMakeFiles/abinitformat.dir/abinitformat.cpp.o.d -o CMakeFiles/abinitformat.dir/abinitformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/abinitformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/abinitformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/abinitformat.cpp: In member function 'virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/abinitformat.cpp:99:12: warning: variable 'acell' set but not used [-Wunused-but-set-variable] 99 | double acell[3]; // scale of lattice vectors | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Linking CXX shared module ../../lib64/confabreport.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/confabreport.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/confabreport.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/confabreport.so CMakeFiles/confabreport.dir/confabreport.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Built target confabreport gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcastepformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -MF CMakeFiles/castepformat.dir/castepformat.cpp.o.d -o CMakeFiles/castepformat.dir/castepformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/castepformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/castepformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Linking CXX shared module ../../lib64/abinitformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/abinitformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/abinitformat.so CMakeFiles/abinitformat.dir/abinitformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 41%] Built target abinitformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Daoforceformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -MF CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o.d -o CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/aoforceformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/aoforceformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dadfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -MF CMakeFiles/adfformat.dir/adfformat.cpp.o.d -o CMakeFiles/adfformat.dir/adfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:35: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:29: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:37: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:228:32: warning: 'virtual const std::string& OpenBabel::OBGenericData::GetValue() const' was hidden [-Woverloaded-virtual=] 228 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:46: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:76:12: note: by 'OpenBabel::OBGridData::GetValue' 76 | double GetValue (vector3 pos) const; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp: In member function 'bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:871:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 871 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:871:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 871 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:884:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 884 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:884:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 884 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:906:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 906 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:906:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 906 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:921:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 921 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:921:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 921 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:936:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 936 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:936:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 936 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Linking CXX shared module ../../lib64/acesformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/acesformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/acesformat.so CMakeFiles/acesformat.dir/acesformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 41%] Built target acesformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 41%] Linking CXX shared module ../../lib64/castepformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/castepformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/castepformat.so CMakeFiles/castepformat.dir/castepformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 41%] Built target castepformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 41%] Linking CXX shared module ../../lib64/aoforceformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/aoforceformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/aoforceformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/aoforceformat.so CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 42%] Built target aoforceformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 42%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddaltonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -MF CMakeFiles/daltonformat.dir/daltonformat.cpp.o.d -o CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp: In member function 'virtual bool OpenBabel::DALTONInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp:148:9: warning: variable 'atomcount' set but not used [-Wunused-but-set-variable] 148 | int atomcount = 0; // for each atom type | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp: In member function 'virtual bool OpenBabel::DALTONInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp:312:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 312 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp:332:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 332 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 41%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrystal09format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -MF CMakeFiles/crystal09format.dir/crystal09format.cpp.o.d -o CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/crystal09format.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/crystal09format.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/crystal09format.cpp:15: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 42%] Linking CXX shared module ../../lib64/daltonformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/daltonformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/daltonformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: 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gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Linking CXX shared module ../lib64/plugin_ops.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/plugin_ops.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_ops.so CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o 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-Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Built target crystal09format gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 42%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddmolformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -MF CMakeFiles/dmolformat.dir/dmolformat.cpp.o.d -o CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dmolformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dmolformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 42%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfchkformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/functional:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:16: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp: In member function 'virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:596:40: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 596 | if (alphaorb_found && (numAOrb > alphaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:609:40: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 609 | if (betaorb_found && (numBOrb > betaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:668:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less_equal; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 668 | bind2nd(less_equal(), 0)) || | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_function.h:1435: /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:671:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 671 | bind2nd(greater(), MxBond)) || | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:674:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 674 | bind2nd(less(), 0)) || | ~~~~~~~^~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:677:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 677 | bind2nd(greater(), Natoms))) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:700:40: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 700 | if (numAOrb > 0 && alphaorb.size() == numAOrb) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:704:41: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 704 | if (numBOrb > 0 && betaorb.size() == numBOrb) { // open shell calculation | ~~~~~~~~~~~~~~~^~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Linking CXX shared module ../../lib64/dmolformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/dmolformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 44%] Built target dmolformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build /usr/bin/gmake -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -MF CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o.d -o CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fhiaimsformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fhiaimsformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 44%] Linking CXX shared module ../../lib64/fhiaimsformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhiaimsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/fhiaimsformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fhiaimsformat.so CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 44%] Built target fhiaimsformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend /usr/bin/gmake -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -MF CMakeFiles/gamessformat.dir/gamessformat.cpp.o.d -o CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp: In member function 'virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp:587:38: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 587 | for (unsigned int i=0; i < modeCount; ++i) { | ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp:233:9: warning: variable 'ndummyatoms' set but not used [-Wunused-but-set-variable] 233 | int ndummyatoms = 0; | ^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 44%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -MF CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o.d -o CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:25: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:30: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:228:32: warning: 'virtual const std::string& OpenBabel::OBGenericData::GetValue() const' was hidden [-Woverloaded-virtual=] 228 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:36: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:76:12: note: by 'OpenBabel::OBGridData::GetValue' 76 | double GetValue (vector3 pos) const; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp: In member function 'virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:432:25: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 432 | while (vgd.size() < nCubes) | ~~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:479:26: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 479 | while (values.size() < n*nCubes) | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:114:17: warning: unused variable 'title' [-Wunused-variable] 114 | const char* title = pConv->GetTitle(); | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 44%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausszmatformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -MF CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o.d -o CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausszmatformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausszmatformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Linking CXX shared module ../lib64/plugin_charges.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/plugin_charges.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.cpp.o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o CMakeFiles/plugin_charges.dir/charges/none.cpp.o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 45%] Built target plugin_charges gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 44%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dhinformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o -MF CMakeFiles/hinformat.dir/hinformat.cpp.o.d -o CMakeFiles/hinformat.dir/hinformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/hinformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/hinformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgaussformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -MF CMakeFiles/gaussformat.dir/gaussformat.cpp.o.d -o CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/data.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp:17: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp: In function 'void OpenBabel::add_unique_pairdata_to_mol(OBMol*, std::string, std::string, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp:284:19: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 284 | if (vs.size() >= start) | ~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp:287:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 287 | for(i=start+1; (i struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Built target fchkformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Linking CXX shared module ../../lib64/hinformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/hinformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/hinformat.so CMakeFiles/hinformat.dir/hinformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Built target hinformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 45%] Linking CXX shared module ../../lib64/gausszmatformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausszmatformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/gausszmatformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gausszmatformat.so CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Built target gausszmatformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 45%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Djaguarformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -MF CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o.d -o CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/jaguarformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/jaguarformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Linking CXX shared module ../../lib64/gulpformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gulpformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/gulpformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gulpformat.so CMakeFiles/gulpformat.dir/gulpformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Built target gulpformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolproformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o -MF CMakeFiles/molproformat.dir/molproformat.cpp.o.d -o CMakeFiles/molproformat.dir/molproformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/molproformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/molproformat.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 44%] Linking CXX shared module ../../lib64/gausscubeformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausscubeformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/gausscubeformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gausscubeformat.so CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Built target gausscubeformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Linking CXX shared module ../../lib64/jaguarformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/jaguarformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/jaguarformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/jaguarformat.so CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Built target jaguarformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmopacformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o -MF CMakeFiles/mopacformat.dir/mopacformat.cpp.o.d -o CMakeFiles/mopacformat.dir/mopacformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mopacformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mopacformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mopacformat.cpp: In member function 'virtual bool OpenBabel::MOPACCARTFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mopacformat.cpp:650:19: warning: variable 'isotopeMass' set but not used [-Wunused-but-set-variable] 650 | double x,y,z, isotopeMass; | ^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpwscfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -MF CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o.d -o CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pwscfformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pwscfformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Linking CXX shared module ../../lib64/molproformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/molproformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/molproformat.so CMakeFiles/molproformat.dir/molproformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnwchemformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -MF CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o.d -o CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadCoordinates(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp:228:72: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 228 | if ((i>=natoms) || (molecule->GetAtom(i+1)->GetAtomicNum() != atoi(vs[2].c_str()))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadMultipoleMoment(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp:306:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 306 | else if (vs[0][0] == '1') | ^ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadPartialCharges(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp:423:56: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 423 | if (molecule->GetAtom(i++)->GetAtomicNum() != charge) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadMEPCalculation(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp:571:25: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 571 | if (energies.size() != molecule->NumConformers()) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp:932:34: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 932 | if (atoi(buffer) != natoms) | ~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp:111:20: warning: 'OpenBabel::BETA_ORBITAL_PATTERN' defined but not used [-Wunused-variable] 111 | static const char* BETA_ORBITAL_PATTERN = "Beta"; | ^~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Built target molproformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dqchemformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o -MF CMakeFiles/qchemformat.dir/qchemformat.cpp.o.d -o CMakeFiles/qchemformat.dir/qchemformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp:16: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp: In member function 'virtual bool OpenBabel::QChemOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp:194:28: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 194 | if (nbAtomRead != mol.NumAtoms()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Linking CXX shared module ../../lib64/pwscfformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/pwscfformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Built target pwscfformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsiestaformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o -MF CMakeFiles/siestaformat.dir/siestaformat.cpp.o.d -o CMakeFiles/siestaformat.dir/siestaformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp: In member function 'virtual bool OpenBabel::SIESTAFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp:92:10: warning: variable 'coordsAreAngstrom' set but not used [-Wunused-but-set-variable] 92 | bool coordsAreAngstrom = false; | ^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp:98:12: warning: variable 'size' set but not used [-Wunused-but-set-variable] 98 | size_t size; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp:102:30: warning: unused variable 'numSpecies' [-Wunused-variable] 102 | int atomicNum, numAtoms, numSpecies; | ^~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 44%] Linking CXX shared module ../../lib64/gamessformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/gamessformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gamessformat.so CMakeFiles/gamessformat.dir/gamessformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Built target gamessformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dturbomoleformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -MF CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o.d -o CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/turbomoleformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/turbomoleformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Linking CXX shared module ../../lib64/turbomoleformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/turbomoleformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Built target turbomoleformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Linking CXX shared module ../../lib64/qchemformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/qchemformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Built target qchemformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f 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/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mopacformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Built target mopacformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f 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/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxsfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o -MF CMakeFiles/xsfformat.dir/xsfformat.cpp.o.d -o CMakeFiles/xsfformat.dir/xsfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xsfformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xsfformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Linking CXX shared module ../../lib64/siestaformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/siestaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/siestaformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/siestaformat.so CMakeFiles/siestaformat.dir/siestaformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Built target siestaformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dzindoformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o -MF CMakeFiles/zindoformat.dir/zindoformat.cpp.o.d -o CMakeFiles/zindoformat.dir/zindoformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/zindoformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/zindoformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dvaspformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o -MF CMakeFiles/vaspformat.dir/vaspformat.cpp.o.d -o CMakeFiles/vaspformat.dir/vaspformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:451:17: warning: unused variable 'freqnum' [-Wunused-variable] 451 | int freqnum = atoi(vs[0].c_str()); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:535:35: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = not_equal_to; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 535 | std::bind2nd(std::not_equal_to(), 0.0)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_function.h:1435: /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:589:36: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = divides; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 589 | std::bind2nd(std::divides(), max / 100.0)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:668:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 668 | for(int i = 0; i < atoms_sorted.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Linking CXX shared module ../../lib64/xsfformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG 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/usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Linking CXX shared module ../../lib64/gaussformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/gaussformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Built target gaussformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o -MF CMakeFiles/APIInterface.dir/APIInterface.cpp.o.d -o CMakeFiles/APIInterface.dir/APIInterface.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/APIInterface.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/APIInterface.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Linking CXX shared module ../../lib64/nwchemformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nwchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/nwchemformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/nwchemformat.so CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Built target nwchemformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Linking CXX shared module ../../lib64/zindoformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/zindoformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/zindoformat.so CMakeFiles/zindoformat.dir/zindoformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Built target zindoformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Linking CXX shared module ../../lib64/APIInterface.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/APIInterface.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/APIInterface.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Built target APIInterface gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o -MF CMakeFiles/CSRformat.dir/CSRformat.cpp.o.d -o CMakeFiles/CSRformat.dir/CSRformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/CSRformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/CSRformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessukformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -MF CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o.d -o CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:14: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadInitialCartesian(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:787:10: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 787 | bool ok=false; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz1(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:853:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 853 | bool ok=false; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz2(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:900:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 900 | bool ok=false; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp: In member function 'virtual bool OpenBabel::GAMESSUKOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:1215:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 1215 | bool ok; | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dorcaformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o -MF CMakeFiles/orcaformat.dir/orcaformat.cpp.o.d -o CMakeFiles/orcaformat.dir/orcaformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp: In member function 'virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:348:33: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 348 | while(vs.size() == nColumn+1) { | ~~~~~~~~~~^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:363:48: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 363 | for (unsigned int i = 0; i < nColumn; i++) { | ~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:375:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 375 | for (unsigned int i = 0; i < nColumn; i++) { | ~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:131:12: warning: unused variable 'energy' [-Wunused-variable] 131 | double energy=0; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:138:9: warning: variable 'nModeAll' set but not used [-Wunused-but-set-variable] 138 | int nModeAll = 0; | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o -MF CMakeFiles/PQSformat.dir/PQSformat.cpp.o.d -o CMakeFiles/PQSformat.dir/PQSformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/PQSformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/PQSformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Linking CXX shared module ../../lib64/CSRformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/CSRformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/CSRformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Built target CSRformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dalchemyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -MF CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o.d -o CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/alchemyformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/alchemyformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacrformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o -MF CMakeFiles/acrformat.dir/acrformat.cpp.o.d -o CMakeFiles/acrformat.dir/acrformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/acrformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/acrformat.cpp:26: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/acrformat.cpp:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Linking CXX shared module ../../lib64/PQSformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/PQSformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/PQSformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Built target PQSformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -MF CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o.d -o CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp: In member function 'void OpenBabel::MCDLFormat::solve(int, int (*)[4], int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:283:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 283 | if (jflag) | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:287:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 287 | nt = 1; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp: In member function 'void OpenBabel::MCDLFormat::setMCDL(std::string, OpenBabel::OBMol*, std::string&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:1267:15: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1267 | if (nPrev == acount) { | ~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp: In member function 'int OpenBabel::MCDLFormat::indexOf(std::string, std::string, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:1385:16: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string::size_type' {aka 'const long unsigned int'} [-Wsign-compare] 1385 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:1386:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1386 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp: In member function 'int OpenBabel::MCDLFormat::lastIndexOf(std::string, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:1399:11: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string::size_type' {aka 'const long unsigned int'} [-Wsign-compare] 1399 | if (n == string::npos) | ~~^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Linking CXX shared module ../../lib64/alchemyformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/alchemyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/alchemyformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/alchemyformat.so CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 50%] Built target alchemyformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build /usr/bin/gmake -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Linking CXX shared module ../../lib64/acrformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/acrformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/acrformat.so CMakeFiles/acrformat.dir/acrformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 51%] Built target acrformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Damberformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o -MF CMakeFiles/amberformat.dir/amberformat.cpp.o.d -o CMakeFiles/amberformat.dir/amberformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/amberformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/amberformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 52%] Linking CXX shared module ../../lib64/amberformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/amberformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/amberformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/amberformat.so CMakeFiles/amberformat.dir/amberformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 52%] Built target amberformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 51%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbalstformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o -MF CMakeFiles/balstformat.dir/balstformat.cpp.o.d -o CMakeFiles/balstformat.dir/balstformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/balstformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/balstformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 51%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbgfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o -MF CMakeFiles/bgfformat.dir/bgfformat.cpp.o.d -o CMakeFiles/bgfformat.dir/bgfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/bgfformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/bgfformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 52%] Linking CXX shared module ../../lib64/balstformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/balstformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/balstformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/balstformat.so CMakeFiles/balstformat.dir/balstformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 52%] Built target balstformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 52%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dboxformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o -MF CMakeFiles/boxformat.dir/boxformat.cpp.o.d -o CMakeFiles/boxformat.dir/boxformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/boxformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/boxformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 52%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacaoformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -MF CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o.d -o CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cacaoformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cacaoformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 52%] Linking CXX shared module ../../lib64/bgfformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/bgfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/bgfformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/bgfformat.so CMakeFiles/bgfformat.dir/bgfformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Built target bgfformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering 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directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacheformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o -MF CMakeFiles/cacheformat.dir/cacheformat.cpp.o.d -o CMakeFiles/cacheformat.dir/cacheformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cacheformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cacheformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Linking CXX shared module ../../lib64/vaspformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/vaspformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/vaspformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/vaspformat.so CMakeFiles/vaspformat.dir/vaspformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Built target vaspformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Linking CXX shared module ../../lib64/orcaformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/orcaformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/orcaformat.so CMakeFiles/orcaformat.dir/orcaformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Built target orcaformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Linking CXX shared module ../../lib64/cacaoformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacaoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/cacaoformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Built target cacaoformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Linking CXX shared module ../../lib64/cacheformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacheformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/cacheformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cacheformat.so CMakeFiles/cacheformat.dir/cacheformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Built target cacheformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcccformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o -MF CMakeFiles/cccformat.dir/cccformat.cpp.o.d -o CMakeFiles/cccformat.dir/cccformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cccformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cccformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Linking CXX shared module ../../lib64/gamessukformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessukformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/gamessukformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gamessukformat.so CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Built target gamessukformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/cofformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcarformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/carformat.dir/carformat.cpp.o -MF CMakeFiles/carformat.dir/carformat.cpp.o.d -o CMakeFiles/carformat.dir/carformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/carformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/carformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawct_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -MF CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o.d -o CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chemdrawct.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chemdrawct.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchem3dformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -MF CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o.d -o CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chem3dformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chem3dformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/math/matrix3x3.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chem3dformat.cpp:17: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Linking CXX shared module ../../lib64/cccformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cccformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/cccformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cccformat.so CMakeFiles/cccformat.dir/cccformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Built target cccformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemtoolformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -MF CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o.d -o CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chemtoolformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chemtoolformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Linking CXX shared module ../../lib64/chemdrawct.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawct.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/chemdrawct.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Built target chemdrawct gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Linking CXX shared module ../../lib64/carformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/carformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/carformat.so CMakeFiles/carformat.dir/carformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Built target carformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Linking CXX shared module ../../lib64/chem3dformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chem3dformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/chem3dformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 55%] Built target chem3dformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Linking CXX shared module ../../lib64/chemtoolformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemtoolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/chemtoolformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/chemtoolformat.so CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 55%] Built target chemtoolformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrkformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o -MF CMakeFiles/crkformat.dir/crkformat.cpp.o.d -o CMakeFiles/crkformat.dir/crkformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/crkformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/crkformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Building CXX object src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcofformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o -MF CMakeFiles/cofformat.dir/cofformat.cpp.o.d -o CMakeFiles/cofformat.dir/cofformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp: In member function 'virtual bool OpenBabel::COFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp:133:22: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 133 | if(vs.size() < offset+9) | ~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp:180:26: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 180 | for(int j=0 ; j< natoms ; j++) | ~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp: In member function 'virtual bool OpenBabel::COFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp:368:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 368 | for( int j=0; j struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 56%] Linking CXX shared module ../../lib64/crkformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/crkformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/crkformat.so CMakeFiles/crkformat.dir/crkformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 57%] Built target crkformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 55%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dexyzformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o -MF CMakeFiles/exyzformat.dir/exyzformat.cpp.o.d -o CMakeFiles/exyzformat.dir/exyzformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/exyzformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/exyzformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/exyzformat.cpp: In member function 'virtual bool OpenBabel::EXYZFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/exyzformat.cpp:124:19: warning: variable 'virtualAtoms' set but not used [-Wunused-but-set-variable] 124 | bool unitCell,virtualAtoms; | ^~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 57%] Linking CXX shared module ../../lib64/cssrformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/cssrformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Built target cssrformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 55%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastsearchformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -MF CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o.d -o CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp:16: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp: In member function 'void OpenBabel::FastSearchFormat::AddPattern(std::vector&, OpenBabel::OBMol, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp:690:11: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 690 | if(idx>=patternMol.NumBonds()) | ~~~^~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 55%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddlpolyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -MF CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o.d -o CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dlpolyformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dlpolyformat.cpp:14: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dlpolyformat.cpp: In member function 'bool OpenBabel::DlpolyInputReader::ParseUnitCell(std::istream&, OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dlpolyformat.cpp:152:10: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 152 | bool ok; | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcifformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o -MF CMakeFiles/cifformat.dir/cifformat.cpp.o.d -o CMakeFiles/cifformat.dir/cifformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp: In member function 'void OpenBabel::CIFData::CalcMatrices()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:915:11: warning: variable 'aa' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:915:14: warning: variable 'bb' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:915:27: warning: variable 'betaa' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:915:33: warning: variable 'gammaa' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 57%] Linking CXX shared module ../../lib64/cofformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cofformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/cofformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cofformat.so CMakeFiles/cofformat.dir/cofformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Built target cofformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfeatformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/featformat.dir/featformat.cpp.o -MF CMakeFiles/featformat.dir/featformat.cpp.o.d -o CMakeFiles/featformat.dir/featformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/featformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/featformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 57%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastaformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o -MF CMakeFiles/fastaformat.dir/fastaformat.cpp.o.d -o CMakeFiles/fastaformat.dir/fastaformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastaformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastaformat.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastaformat.cpp: In function 'void OpenBabel::add_residue(OBMol*, OBResidue*, double, double, long unsigned int&, ResidueRecord*, int, OBAtom*&, bool, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastaformat.cpp:394:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 394 | else if (atom_count > resBondFromOffset) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Linking CXX shared module ../../lib64/exyzformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/exyzformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/exyzformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/exyzformat.so CMakeFiles/exyzformat.dir/exyzformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Built target exyzformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Linking CXX shared module ../../lib64/featformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/featformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/featformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/featformat.so CMakeFiles/featformat.dir/featformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Built target featformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 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-Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/MCDLformat.so CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Built target MCDLformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Linking CXX shared module ../../lib64/fastsearchformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastsearchformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/fastsearchformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fastsearchformat.so CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Built target fastsearchformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Linking CXX shared module ../../lib64/fastaformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/fastaformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 59%] Built target fastaformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o -MF CMakeFiles/fhformat.dir/fhformat.cpp.o.d -o CMakeFiles/fhformat.dir/fhformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fhformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fhformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfingerprintformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -MF CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o.d -o CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fingerprintformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fingerprintformat.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fingerprintformat.cpp:15: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfpsformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o -MF CMakeFiles/fpsformat.dir/fpsformat.cpp.o.d -o CMakeFiles/fpsformat.dir/fpsformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp:15: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp: In member function 'virtual bool OpenBabel::FPSFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp:152:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 152 | for(unsigned i=0;i<(_nbits+31)/32;++i) | ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp: In member function 'std::string OpenBabel::FPSFormat::getTimeStr()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp:175:10: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] 175 | size_t time_res; /* Result of strftime */ | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 59%] Linking CXX shared module ../../lib64/fhformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/fhformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fhformat.so CMakeFiles/fhformat.dir/fhformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 59%] Built target fhformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Linking CXX shared module ../../lib64/dlpolyformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlpolyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/dlpolyformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/dlpolyformat.so CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Built target dlpolyformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/lmpdatformat.dir/build.make 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/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 59%] Linking CXX shared module ../../lib64/fingerprintformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fingerprintformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/fingerprintformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fingerprintformat.so CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Built target fingerprintformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 59%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfreefracformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o -MF CMakeFiles/freefracformat.dir/freefracformat.cpp.o.d -o CMakeFiles/freefracformat.dir/freefracformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/freefracformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/freefracformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 59%] Linking CXX shared module ../../lib64/fpsformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/fpsformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fpsformat.so CMakeFiles/fpsformat.dir/fpsformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Built target fpsformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 59%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dghemicalformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -MF CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o.d -o CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/ghemicalformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/ghemicalformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgromos96format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o -MF CMakeFiles/gromos96format.dir/gromos96format.cpp.o.d -o CMakeFiles/gromos96format.dir/gromos96format.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gromos96format.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gromos96format.cpp:54: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Linking CXX shared module ../../lib64/cifformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cifformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/cifformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cifformat.so CMakeFiles/cifformat.dir/cifformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Built target cifformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Linking CXX shared module ../../lib64/freefracformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/freefracformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/freefracformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/freefracformat.so CMakeFiles/freefracformat.dir/freefracformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Built target freefracformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Linking CXX shared module ../../lib64/gromos96format.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/gromos96format.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Built target gromos96format gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Linking CXX shared module ../../lib64/ghemicalformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ghemicalformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/ghemicalformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/ghemicalformat.so CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlmpdatformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -MF CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o.d -o CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp: In member function 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp:277:20: warning: unused variable 'length' [-Wunused-variable] 277 | double length=cmax-cmin; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp:367:25: warning: unused variable 'atomid' [-Wunused-variable] 367 | int atomid=5; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp:368:28: warning: unused variable 'charge' [-Wunused-variable] 368 | double charge=0.5; | ^~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Built target ghemicalformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgroformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/groformat.dir/groformat.cpp.o -MF CMakeFiles/groformat.dir/groformat.cpp.o.d -o CMakeFiles/groformat.dir/groformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/groformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/groformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlpmdformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -MF CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o.d -o CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp: In member function 'virtual bool OpenBabel::LpmdFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:196:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 196 | if(int(headers.size()-1)!=tokens.size()) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:210:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 210 | for(int i=1 ; i < headers.size() ; ++i) //the first element is HDR | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:243:11: warning: unused variable 'FX' [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:243:32: warning: unused variable 'FY' [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:243:53: warning: unused variable 'FZ' [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp: In member function 'virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:366:18: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 366 | for(int i=0; i < mol.NumAtoms() ; ++i) | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:382:15: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 382 | for(int i=0;i struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpdformat.cpp: In member function 'virtual bool OpenBabel::MPDFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpdformat.cpp:210:42: warning: variable 'idx_true' set but not used [-Wunused-but-set-variable] 210 | bool xml_true=false, pre_true=false, idx_true=false; | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmodformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o -MF CMakeFiles/mmodformat.dir/mmodformat.cpp.o.d -o CMakeFiles/mmodformat.dir/mmodformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mmodformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mmodformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdffformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o -MF CMakeFiles/mdffformat.dir/mdffformat.cpp.o.d -o CMakeFiles/mdffformat.dir/mdffformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp: In member function 'virtual bool OpenBabel::MDFFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:249:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 249 | for(int i = 0; i < atom_t_prop.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:270:33: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 270 | for(unsigned int j = 0; j < atom_t_prop[i].num_of_atoms; j++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp: In member function 'bool OpenBabel::aindx::operator<(const OpenBabel::aindx&) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:329:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 329 | for(int i = 0; i < vs.size(); i++) | ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp: In member function 'virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:388:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 388 | for(int i = 0; i < vs.size(); i++) | ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:443:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, unsigned int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 443 | for (int i = 0; i < atypes_def.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:450:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, unsigned int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 450 | for (int i = 0; i < atypes_def.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:500:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, unsigned int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 500 | for(int j = 0; j < atypes_def.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Linking CXX shared module ../../lib64/mpdformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpdformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mpdformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Built target mpdformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmoldenformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o -MF CMakeFiles/moldenformat.dir/moldenformat.cpp.o.d -o CMakeFiles/moldenformat.dir/moldenformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/moldenformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/moldenformat.cpp:35: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/moldenformat.cpp:27: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 61%] Linking CXX shared module ../../lib64/groformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/groformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/groformat.so CMakeFiles/groformat.dir/groformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Built target groformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmcifformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -MF CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o.d -o CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mmcifformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mmcifformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Linking CXX shared module ../../lib64/mmodformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mmodformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mmodformat.so CMakeFiles/mmodformat.dir/mmodformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Built target mmodformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 61%] Linking CXX shared module ../../lib64/lmpdatformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/lmpdatformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Built target lmpdatformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpqcformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -MF CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o.d -o CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpqcformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpqcformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o -MF CMakeFiles/msiformat.dir/msiformat.cpp.o.d -o CMakeFiles/msiformat.dir/msiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msiformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msiformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msiformat.cpp: In member function 'virtual bool OpenBabel::MSIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msiformat.cpp:77:17: warning: unused variable 'title' [-Wunused-variable] 77 | const char* title = pConv->GetTitle(); | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsmsformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o -MF CMakeFiles/msmsformat.dir/msmsformat.cpp.o.d -o CMakeFiles/msmsformat.dir/msmsformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msmsformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msmsformat.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msmsformat.cpp:26: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Linking CXX shared module ../../lib64/mpqcformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mpqcformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Built target mpqcformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Linking CXX shared module ../../lib64/msmsformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msmsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/msmsformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/msmsformat.so CMakeFiles/msmsformat.dir/msmsformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Built target msmsformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Linking CXX shared module ../../lib64/msiformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/msiformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/msiformat.so CMakeFiles/msiformat.dir/msiformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Built target msiformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dopendxformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o -MF CMakeFiles/opendxformat.dir/opendxformat.cpp.o.d -o CMakeFiles/opendxformat.dir/opendxformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp:21: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp:25: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:228:32: warning: 'virtual const std::string& OpenBabel::OBGenericData::GetValue() const' was hidden [-Woverloaded-virtual=] 228 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:76:12: note: by 'OpenBabel::OBGridData::GetValue' 76 | double GetValue (vector3 pos) const; | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Linking CXX shared module ../../lib64/moldenformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldenformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/moldenformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Built target moldenformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 61%] Linking CXX shared module ../../lib64/lpmdformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lpmdformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG 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"--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Built target lpmdformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats 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-Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Built target mdffformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Doutformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/outformat.dir/outformat.cpp.o -MF CMakeFiles/outformat.dir/outformat.cpp.o.d -o CMakeFiles/outformat.dir/outformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/outformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/outformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Linking CXX shared module ../../lib64/opendxformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/opendxformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 64%] Built target opendxformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix 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-I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -MF CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o.d -o CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pcmodelformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pcmodelformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 64%] Linking CXX shared module ../../lib64/outformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/outformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/outformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/outformat.so CMakeFiles/outformat.dir/outformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 65%] Built target outformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Linking CXX shared module ../../lib64/mmcifformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mmcifformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 65%] Built target mmcifformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f 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/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpointcloudformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -MF CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o.d -o CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp:30: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp:28: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp: In member function 'virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp:226:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 226 | for( int j = 0; j < radius_mult_list.size(); j++ ) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dposformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/posformat.dir/posformat.cpp.o -MF CMakeFiles/posformat.dir/posformat.cpp.o.d -o CMakeFiles/posformat.dir/posformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/posformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/posformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 65%] Linking CXX shared module ../../lib64/pcmodelformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/pcmodelformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 66%] Built target pcmodelformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 65%] Linking CXX shared module ../../lib64/pointcloudformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pointcloudformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/pointcloudformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pointcloudformat.so CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 66%] Built target pointcloudformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 64%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dshelxformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o -MF CMakeFiles/shelxformat.dir/shelxformat.cpp.o.d -o CMakeFiles/shelxformat.dir/shelxformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/shelxformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/shelxformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/math/matrix3x3.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/shelxformat.cpp:17: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpqrformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o -MF CMakeFiles/pqrformat.dir/pqrformat.cpp.o.d -o CMakeFiles/pqrformat.dir/pqrformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp: In function 'double OpenBabel::parseAtomCharge(char*, OBMol&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp:207:13: warning: unused variable 'atom' [-Wunused-variable] 207 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp: In function 'double OpenBabel::parseAtomRadius(char*, OBMol&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp:222:13: warning: unused variable 'atom' [-Wunused-variable] 222 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 66%] Linking CXX shared module ../../lib64/posformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/posformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/posformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/posformat.so CMakeFiles/posformat.dir/posformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 67%] Built target posformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 65%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dstlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o -MF CMakeFiles/stlformat.dir/stlformat.cpp.o.d -o CMakeFiles/stlformat.dir/stlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp:32: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp:28: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp: In function 'void OpenBabel::map_sphere(std::vector&, vector3, double, uint16_t)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp:157:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 157 | for( int i=0 ; i < points.size()-2; i++ ) { | ~~^~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbqtformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -MF CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o.d -o CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp: In function 'bool OpenBabel::OutputTree(OBConversion*, OBMol&, std::ostream&, std::map&, unsigned int, bool, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:581:20: warning: unused variable 'child' [-Wunused-variable] 581 | unsigned int child=i; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp: In function 'bool OpenBabel::Separate_preserve_charges(OBMol&, std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:797:9: warning: unused variable 'fragments' [-Wunused-variable] 797 | int fragments = 0; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:750:16: warning: 'unsigned int OpenBabel::AtomsSoFar(const std::map&, unsigned int)' defined but not used [-Wunused-function] 750 | unsigned int AtomsSoFar(const map & tree, unsigned int depth) | ^~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 67%] Linking CXX shared module ../../lib64/shelxformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/shelxformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Built target shelxformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Linking CXX shared module ../../lib64/stlformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/stlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/stlformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/stlformat.so CMakeFiles/stlformat.dir/stlformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Built target stlformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/wlnformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 68%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dunichemformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o -MF CMakeFiles/unichemformat.dir/unichemformat.cpp.o.d -o CMakeFiles/unichemformat.dir/unichemformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/unichemformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/unichemformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 66%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dthermoformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o -MF CMakeFiles/thermoformat.dir/thermoformat.cpp.o.d -o CMakeFiles/thermoformat.dir/thermoformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/thermoformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/thermoformat.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/thermoformat.cpp:21: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 65%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmileyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o -MF CMakeFiles/smileyformat.dir/smileyformat.cpp.o.d -o CMakeFiles/smileyformat.dir/smileyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp: In member function 'void OpenBabel::OpenBabelCallback::setChiral(int, Smiley::Chirality, const std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'NotChiral' not handled in switch [-Wswitch] 158 | switch (chirality) { | ^ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TH1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TH2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'AL1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'AL2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'SP1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'SP2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'SP3' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB3' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB4' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB5' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB6' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB7' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB8' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB9' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB10' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB11' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB12' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB13' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB14' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB15' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB16' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB17' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB18' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB19' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB20' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH3' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH4' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH5' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH6' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH7' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH8' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH9' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH10' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH11' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH12' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH13' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH14' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH15' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH16' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH17' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH18' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH19' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH20' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH21' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH22' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH23' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH24' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH25' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH26' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH27' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH28' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH29' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH30' not handled in switch [-Wswitch] In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:26: /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h: In instantiation of 'void Smiley::Parser::processStereochemistry() [with Callback = OpenBabel::OpenBabelCallback]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2707:9: required from 'void Smiley::Parser::parse(const std::string&) [with Callback = OpenBabel::OpenBabelCallback; std::string = std::__cxx11::basic_string]' 2707 | processStereochemistry(); | ^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:370:19: required from here 370 | parser.parse(smiles); | ~~~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2642:43: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2642 | if (m_chiralInfo[i].nbrs.size() != expectedValence && m_exceptions & InvalidChiralValence) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h: In instantiation of 'Smiley::Parser::RingBondInfo::RingBondInfo(int, int, bool, bool, bool, std::size_t) [with Callback = OpenBabel::OpenBabelCallback; std::size_t = long unsigned int]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2409:41: required from 'void Smiley::Parser::processRingBond(int, std::size_t) [with Callback = OpenBabel::OpenBabelCallback; std::size_t = long unsigned int]' 2409 | m_ringBonds[m_prev].push_back(RingBondInfo(rnum, m_bondOrder, m_isUp, m_isDown, m_explicitBond, pos)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2429:11: required from 'void Smiley::Parser::parseRingBond() [with Callback = OpenBabel::OpenBabelCallback]' 2429 | processRingBond(m_str[m_pos] - '0', m_pos); | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2507:13: required from 'void Smiley::Parser::parseChain() [with Callback = OpenBabel::OpenBabelCallback]' 2507 | parseRingBond(); | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2698:9: required from 'void Smiley::Parser::parse(const std::string&) [with Callback = OpenBabel::OpenBabelCallback; std::string = std::__cxx11::basic_string]' 2698 | parseChain(); | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:370:19: required from here 370 | parser.parse(smiles); | ~~~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:986:14: warning: 'Smiley::Parser::RingBondInfo::isExplicit' will be initialized after [-Wreorder] 986 | bool isExplicit; | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:981:21: warning: 'std::size_t Smiley::Parser::RingBondInfo::pos' [-Wreorder] 981 | std::size_t pos; | ^~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:974:9: warning: when initialized here [-Wreorder] 974 | RingBondInfo(int number_, int order_, bool isUp_, bool isDown_, | ^~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 67%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtinkerformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -MF CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o.d -o CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp: In function 'int OpenBabel::SetMM3Type(OBAtom*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp:415:11: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 415 | if (b->GetHyb() == 2) // S=C | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp:416:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 416 | countNeighborC++; break; | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dviewmolformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -MF CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o.d -o CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/viewmolformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/viewmolformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Linking CXX shared module ../../lib64/unichemformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/unichemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/unichemformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 70%] Built target unichemformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 67%] Linking CXX shared module ../../lib64/pqrformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/pqrformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 70%] Built target pqrformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dwlnformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o -MF CMakeFiles/wlnformat.dir/wlnformat.cpp.o.d -o CMakeFiles/wlnformat.dir/wlnformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/wlnformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/wlnformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/wlnformat.cpp: In member function 'virtual bool OpenBabel::WLNFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/wlnformat.cpp:138:17: warning: unused variable 'title' [-Wunused-variable] 138 | const char* title = pConv->GetTitle(); | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Linking CXX shared module ../../lib64/thermoformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/thermoformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 70%] Built target thermoformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Linking CXX shared module ../../lib64/tinkerformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/tinkerformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 70%] Built target tinkerformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 70%] Linking CXX shared module ../../lib64/viewmolformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/viewmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/viewmolformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/viewmolformat.so CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 72%] Built target viewmolformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 70%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dwlnformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -MF CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o.d -o CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/wln-nextmove.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 70%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxedformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o -MF CMakeFiles/xedformat.dir/xedformat.cpp.o.d -o CMakeFiles/xedformat.dir/xedformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xedformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xedformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 71%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dyasaraformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -MF CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o.d -o CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp:34: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp: In member function 'virtual bool OpenBabel::YOBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp:373:21: warning: variable 'reslen' set but not used [-Wunused-but-set-variable] 373 | int /*samenames,*/reslen,charged; | ^~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 71%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxyzformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o -MF CMakeFiles/xyzformat.dir/xyzformat.cpp.o.d -o CMakeFiles/xyzformat.dir/xyzformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xyzformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xyzformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 72%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drxnformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o -MF CMakeFiles/rxnformat.dir/rxnformat.cpp.o.d -o CMakeFiles/rxnformat.dir/rxnformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp:26: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp:18: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp: In member function 'virtual bool OpenBabel::RXNFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp:196:22: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 196 | for (int i=0; i