<86>Nov 22 03:51:11 userdel[2983409]: delete user 'rooter' <86>Nov 22 03:51:11 userdel[2983409]: removed group 'rooter' owned by 'rooter' <86>Nov 22 03:51:11 userdel[2983409]: removed shadow group 'rooter' owned by 'rooter' <86>Nov 22 03:51:11 groupadd[2983425]: group added to /etc/group: name=rooter, GID=939 <86>Nov 22 03:51:11 groupadd[2983425]: group added to /etc/gshadow: name=rooter <86>Nov 22 03:51:11 groupadd[2983425]: new group: name=rooter, GID=939 <86>Nov 22 03:51:11 useradd[2983443]: new user: name=rooter, UID=939, GID=939, home=/root, shell=/bin/bash <86>Nov 22 03:51:11 userdel[2983465]: delete user 'builder' <86>Nov 22 03:51:11 userdel[2983465]: removed group 'builder' owned by 'builder' <86>Nov 22 03:51:11 groupadd[2983492]: group added to /etc/group: name=builder, GID=940 <86>Nov 22 03:51:11 groupadd[2983492]: group added to /etc/gshadow: name=builder <86>Nov 22 03:51:11 groupadd[2983492]: new group: name=builder, GID=940 <86>Nov 22 03:51:11 useradd[2983508]: new user: name=builder, UID=940, GID=940, home=/usr/src, shell=/bin/bash warning: user user does not exist - using root warning: group user does not exist - using root warning: user user does not exist - using root warning: group user does not exist - using root warning: user user does not exist - using root warning: group user does not exist - using root warning: user user does not exist - using root warning: group user does not exist - using root <13>Nov 22 03:51:12 rpmi: xorg-proto-devel-2021.5-alt1 sisyphus+285490.100.1.1 1632124129 installed <13>Nov 22 03:51:12 rpmi: libglvnd-7:1.3.4-alt1 sisyphus+286013.100.1.1 1632749263 installed <13>Nov 22 03:51:12 rpmi: libexpat-2.2.10-alt1 sisyphus+276608.100.1.2 1625153355 installed <13>Nov 22 03:51:12 rpmi: libpng16-1.6.37-alt1 sisyphus+275734.100.2.1 1624788826 installed <13>Nov 22 03:51:12 rpmi: libjpeg-2:2.0.6-alt4 sisyphus+284191.100.1.1 1630330711 installed <13>Nov 22 03:51:12 rpmi: libXau-1.0.9-alt1 sisyphus+278247.100.1.1 1626080736 installed <13>Nov 22 03:51:12 rpmi: libwayland-server-1.19.0-alt1 sisyphus+287634.100.1.1 1634659926 installed <13>Nov 22 03:51:13 rpmi: libicu69-1:6.9.1-alt2 sisyphus+277632.100.1.1 1625726150 installed <13>Nov 22 03:51:13 rpmi: libgraphite2-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605111 installed <13>Nov 22 03:51:13 rpmi: libgraphite2-devel-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605111 installed <13>Nov 22 03:51:13 rpmi: icu-utils-1:6.9.1-alt2 sisyphus+277632.100.1.1 1625726150 installed <13>Nov 22 03:51:13 rpmi: libicu-devel-1:6.9.1-alt2 sisyphus+277632.100.1.1 1625726150 installed <13>Nov 22 03:51:13 rpmi: libXau-devel-1.0.9-alt1 sisyphus+278247.100.1.1 1626080736 installed <13>Nov 22 03:51:13 rpmi: libGLES-7:1.3.4-alt1 sisyphus+286013.100.1.1 1632749263 installed <13>Nov 22 03:51:13 rpmi: libOpenGL-7:1.3.4-alt1 sisyphus+286013.100.1.1 1632749263 installed <13>Nov 22 03:51:13 rpmi: zlib-devel-1.2.11-alt2 sisyphus+283721.100.1.1 1629847002 installed <13>Nov 22 03:51:13 rpmi: libncurses-6.3.20211106-alt1 sisyphus+289273.100.1.1 1636477028 installed <13>Nov 22 03:51:13 rpmi: libtinfo-devel-6.3.20211106-alt1 sisyphus+289273.100.1.1 1636477028 installed <13>Nov 22 03:51:13 rpmi: libncurses-devel-6.3.20211106-alt1 sisyphus+289273.100.1.1 1636477028 installed <13>Nov 22 03:51:13 rpmi: libxshmfence-1.3-alt1 sisyphus+278248.100.1.1 1626080762 installed <13>Nov 22 03:51:13 rpmi: libX11-locales-3:1.7.2-alt1 sisyphus+279629.100.1.1 1626637383 installed <13>Nov 22 03:51:13 rpmi: libXdmcp-1.1.3-alt1 sisyphus+278816.100.1.1 1626219231 installed <13>Nov 22 03:51:13 rpmi: libxcb-1.14-alt1 sisyphus+277968.100.1.3 1625952322 installed <13>Nov 22 03:51:13 rpmi: libX11-3:1.7.2-alt1 sisyphus+279629.100.1.1 1626637383 installed <13>Nov 22 03:51:13 rpmi: libXext-1.3.4-alt1 sisyphus+278817.100.1.3 1626262596 installed <13>Nov 22 03:51:13 rpmi: libXfixes-6.0.0-alt1 sisyphus+284644.300.1.1 1630910331 installed <13>Nov 22 03:51:13 rpmi: libXrender-0.9.10-alt1 sisyphus+278480.100.1.2 1626227740 installed <13>Nov 22 03:51:13 rpmi: libXcursor-1.2.0-alt1 sisyphus+278256.100.1.2 1626134578 installed <13>Nov 22 03:51:13 rpmi: libXinerama-1.1.4-alt1 sisyphus+275328.100.2.2 1624575558 installed <13>Nov 22 03:51:13 rpmi: libXxf86vm-1.1.4-alt2 sisyphus+275334.100.2.2 1624577011 installed <13>Nov 22 03:51:14 rpmi: libxcb-devel-1.14-alt1 sisyphus+277968.100.1.3 1625952322 installed <13>Nov 22 03:51:14 rpmi: libX11-devel-3:1.7.2-alt1 sisyphus+279629.100.1.1 1626637383 installed <13>Nov 22 03:51:14 rpmi: libXrender-devel-0.9.10-alt1 sisyphus+278480.100.1.2 1626227740 installed <13>Nov 22 03:51:14 rpmi: libwayland-client-1.19.0-alt1 sisyphus+287634.100.1.1 1634659926 installed <13>Nov 22 03:51:14 rpmi: libpciaccess-1:0.16-alt1 sisyphus+278288.100.1.1 1626084210 installed <13>Nov 22 03:51:14 rpmi: libdrm-1:2.4.108-alt1 sisyphus+289309.100.1.1 1636539685 installed <13>Nov 22 03:51:14 rpmi: libGLX-mesa-4:21.2.5-alt1 sisyphus+288369.100.1.1 1635525843 installed <13>Nov 22 03:51:14 rpmi: libGLX-7:1.3.4-alt1 sisyphus+286013.100.1.1 1632749263 installed <13>Nov 22 03:51:14 rpmi: libGL-7:1.3.4-alt1 sisyphus+286013.100.1.1 1632749263 installed <13>Nov 22 03:51:14 rpmi: libGLU-4:9.0.1-alt1 sisyphus+278350.100.1.2 1626174382 installed <13>Nov 22 03:51:14 rpmi: libgbm-4:21.2.5-alt1 sisyphus+288369.100.1.1 1635525843 installed <13>Nov 22 03:51:14 rpmi: libEGL-mesa-4:21.2.5-alt1 sisyphus+288369.100.1.1 1635525843 installed <13>Nov 22 03:51:14 rpmi: libEGL-7:1.3.4-alt1 sisyphus+286013.100.1.1 1632749263 installed <13>Nov 22 03:51:14 rpmi: libglvnd-devel-7:1.3.4-alt1 sisyphus+286013.100.1.1 1632749263 installed <13>Nov 22 03:51:14 rpmi: libGLU-devel-4:9.0.1-alt1 sisyphus+278350.100.1.2 1626174382 installed <13>Nov 22 03:51:14 rpmi: gcc-c++-common-1.4.27-alt1 sisyphus+278099.1300.1.1 1626028636 installed <13>Nov 22 03:51:14 rpmi: libstdc++11-devel-11.2.1-alt1 sisyphus+285602.200.1.1 1632233545 installed <13>Nov 22 03:51:15 rpmi: gcc11-c++-11.2.1-alt1 sisyphus+285602.200.1.1 1632233545 installed <13>Nov 22 03:51:15 rpmi: libbrotlicommon-1.0.9-alt2 sisyphus+278430.100.1.2 1626213212 installed <13>Nov 22 03:51:15 rpmi: libbrotlidec-1.0.9-alt2 sisyphus+278430.100.1.2 1626213212 installed <13>Nov 22 03:51:15 rpmi: libharfbuzz-3.1.1-alt1 sisyphus+289454.200.2.1 1636740962 installed <13>Nov 22 03:51:15 rpmi: libfreetype-2.11.0-alt1 sisyphus+281294.100.1.1 1627488670 installed <13>Nov 22 03:51:15 rpmi: fontconfig-2.13.1-alt2 sisyphus+283256.100.1.1 1629274953 installed Updating fonts cache: <29>Nov 22 03:51:16 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Nov 22 03:51:16 rpmi: libXft-2.3.4-alt1 sisyphus+284644.500.1.1 1630910476 installed <13>Nov 22 03:51:16 rpmi: libfltk13-1.3.5-alt0.2.rc1 sisyphus+285712.100.1.2 1632337979 installed <13>Nov 22 03:51:16 rpmi: libharfbuzz-icu-3.1.1-alt1 sisyphus+289454.200.2.1 1636740962 installed <13>Nov 22 03:51:16 rpmi: libharfbuzz-gobject-3.1.1-alt1 sisyphus+289454.200.2.1 1636740962 installed <13>Nov 22 03:51:16 rpmi: libgdbm-1.8.3-alt10 sisyphus+278100.1600.1.1 1626058413 installed <13>Nov 22 03:51:16 rpmi: xml-utils-1:2.9.12-alt1 sisyphus+279621.1100.1.1 1626630109 installed <13>Nov 22 03:51:16 rpmi: rpm-build-gir-0.7.3-alt3 sisyphus+242150.100.1.1 1575312005 installed <13>Nov 22 03:51:16 rpmi: libp11-kit-0.23.15-alt2 sisyphus+287552.300.2.1 1634541413 installed <13>Nov 22 03:51:16 rpmi: libtasn1-4.17.0-alt2 sisyphus+285706.100.1.1 1632328563 installed <13>Nov 22 03:51:16 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+278157.100.2.1 1626055790 installed <13>Nov 22 03:51:16 rpmi: alternatives-0.5.1-alt1 sisyphus+278157.100.2.1 1626055790 installed <13>Nov 22 03:51:16 rpmi: ca-certificates-2021.10.06-alt1 sisyphus+286526.200.1.1 1633528578 installed <13>Nov 22 03:51:16 rpmi: ca-trust-0.1.2-alt1 sisyphus+233348.100.1.1 1561653823 installed <13>Nov 22 03:51:16 rpmi: p11-kit-trust-0.23.15-alt2 sisyphus+287552.300.2.1 1634541413 installed <13>Nov 22 03:51:16 rpmi: libcrypto1.1-1.1.1l-alt2 sisyphus+287339.100.1.1 1634383589 installed <13>Nov 22 03:51:16 rpmi: libssl1.1-1.1.1l-alt2 sisyphus+287339.100.1.1 1634383589 installed <13>Nov 22 03:51:16 rpmi: python3-3.9.7-alt3 sisyphus+287552.400.2.1 1634542953 installed <13>Nov 22 03:51:16 rpmi: python3-base-3.9.7-alt3 sisyphus+287552.400.2.1 1634542953 installed <13>Nov 22 03:51:16 rpmi: glib2-devel-2.70.1-alt1 sisyphus+290326.240.2.1 1637476149 installed <13>Nov 22 03:51:17 rpmi: libfreetype-devel-2.11.0-alt1 sisyphus+281294.100.1.1 1627488670 installed <13>Nov 22 03:51:17 rpmi: libharfbuzz-devel-3.1.1-alt1 sisyphus+289454.200.2.1 1636740962 installed <13>Nov 22 03:51:17 rpmi: fontconfig-devel-2.13.1-alt2 sisyphus+283256.100.1.1 1629274953 installed <13>Nov 22 03:51:17 rpmi: libpython3-3.9.7-alt3 sisyphus+287552.400.2.1 1634542953 installed <13>Nov 22 03:51:17 rpmi: tests-for-installed-python3-pkgs-0.1.17-alt1 sisyphus+271082.100.1.1 1619820927 installed <13>Nov 22 03:51:17 rpmi: rpm-build-python3-0.1.17-alt1 sisyphus+271082.100.1.1 1619820927 installed <13>Nov 22 03:51:17 rpmi: python3-dev-3.9.7-alt3 sisyphus+287552.400.2.1 1634542953 installed <13>Nov 22 03:51:17 rpmi: libXft-devel-2.3.4-alt1 sisyphus+284644.500.1.1 1630910476 installed <13>Nov 22 03:51:17 rpmi: libfltk-devel-1.3.5-alt0.2.rc1 sisyphus+285712.100.1.2 1632337979 installed <13>Nov 22 03:51:17 rpmi: gcc-c++-11-alt1 sisyphus+285602.400.1.1 1632238564 installed <13>Nov 22 03:51:17 rpmi: libXcursor-devel-1.2.0-alt1 sisyphus+278256.100.1.2 1626134578 installed <13>Nov 22 03:51:17 rpmi: libXext-devel-1.3.4-alt1 sisyphus+278817.100.1.3 1626262596 installed <13>Nov 22 03:51:17 rpmi: libXfixes-devel-6.0.0-alt1 sisyphus+284644.300.1.1 1630910331 installed <13>Nov 22 03:51:17 rpmi: libXinerama-devel-1.1.4-alt1 sisyphus+275328.100.2.2 1624575558 installed <13>Nov 22 03:51:17 rpmi: libpng-devel-1.6.37-alt1 sisyphus+275734.100.2.1 1624788826 installed <13>Nov 22 03:51:17 rpmi: libjpeg-devel-2:2.0.6-alt4 sisyphus+284191.100.1.1 1630330711 installed Building target platforms: x86_64 Building for target x86_64 Wrote: /usr/src/in/nosrpm/seaview-5.0.4-alt1.nosrc.rpm (w1.gzdio) Installing seaview-5.0.4-alt1.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.60546 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf seaview + echo 'Source #0 (seaview-5.0.4.tar.gz):' Source #0 (seaview-5.0.4.tar.gz): + /bin/gzip -dc /usr/src/RPM/SOURCES/seaview-5.0.4.tar.gz + /bin/tar -xf - + cd seaview + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #0 (seaview-chris.patch):' Patch #0 (seaview-chris.patch): + /usr/bin/patch -p1 -b --suffix .chris patching file csrc/dnapars.c patching file csrc/phylip.c patching file csrc/phylip.h patching file csrc/protpars.c patching file Makefile + chmod -x addbootstrap.cxx align.cxx comlines.cxx concatenate.cxx custom.cxx least_squares_brl.cxx load_seq.cxx nexus.cxx pdf_or_ps.cxx pseudoterminal.cxx racnuc_fetch.cxx regions.cxx resource.cxx seaview.cxx statistics.cxx svg.cxx tbe.cxx threads.cxx treedraw.cxx treerecs_draw.cxx trees.cxx unrooted.cxx use_mase_files.cxx viewasprots.cxx win32_extras.cxx xfmatpt.cxx + chmod -x csrc/bionj.c csrc/dnapars.c csrc/lwl.c csrc/md5.c csrc/misc_acnuc.c csrc/parser.c csrc/parser.h csrc/phylip.c csrc/phylip.h csrc/phyml_util.c csrc/phyml_util.h csrc/protpars.c csrc/raa_acnuc.c csrc/raa_acnuc.h csrc/seq.c csrc/seq.h csrc/zsockr.c + sed -i 's|^\(CFLAGS.*\)|\1 -g -DFL_LIBRARY|' Makefile + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.60546 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd seaview + make -j16 make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF resource.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF viewasprots.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF comlines.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF concatenate.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF load_seq.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF nexus.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF custom.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF regions.cxx regions.cxx: In function 'void save_active_region(SEA_VIEW*)': regions.cxx:502:10: warning: variable 'taille' set but not used [-Wunused-but-set-variable] 502 | int tmp, taille; | ^~~~~~ regions.cxx: In function 'int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)': regions.cxx:313:9: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 313 | system(cmd); | ~~~~~~^~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF threads.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF least_squares_brl.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF racnuc_fetch.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF statistics.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pseudoterminal.cxx pseudoterminal.cxx: In function 'int run_external_prog_in_pseudoterm(char*, const char*, const char*)': pseudoterminal.cxx:342:24: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 342 | freopen( (dialogfname ? dialogfname : slavename), "r", stdin); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pseudoterminal.cxx:343:24: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 343 | freopen(slavename, "a", stderr); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF align.cxx align.cxx: In function 'void replace_stars(char*)': align.cxx:1302:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1302 | fread(all, 1, l, in); | ~~~~~^~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -Dunix -Icsrc csrc/parser.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF use_mase_files.cxx use_mase_files.cxx: In function 'int read_mase_seqs_header(const char*, char***, char***, char***, char**, char**)': use_mase_files.cxx:215:9: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 215 | while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0; | ^~~~~ use_mase_files.cxx:215:69: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 215 | while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0; | ^~~~ use_mase_files.cxx: In function 'int read_clustal_align(const char*, char***, char***, char***, char**, char**)': use_mase_files.cxx:623:17: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 623 | while(*p==' ') p--; *(p+1)=0; | ^~~~~ use_mase_files.cxx:623:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 623 | while(*p==' ') p--; *(p+1)=0; | ^ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -Dunix -Icsrc csrc/md5.c csrc/md5.c:200:34: warning: argument 1 of type 'uint32[4]' {aka 'unsigned int[4]'} with mismatched bound [-Warray-parameter=] 200 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~^~~~~~ csrc/md5.c:47:35: note: previously declared as 'uint32 *' {aka 'unsigned int *'} 47 | static void MD5_Transform(uint32 *buf, uint32 const *in); | ~~~~~~~~^~~ csrc/md5.c:200:55: warning: argument 2 of type 'const uint32[16]' {aka 'const unsigned int[16]'} with mismatched bound [-Warray-parameter=] 200 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~~~~~~~^~~~~~ csrc/md5.c:47:54: note: previously declared as 'const uint32 *' {aka 'const unsigned int *'} 47 | static void MD5_Transform(uint32 *buf, uint32 const *in); | ~~~~~~~~~~~~~~^~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -Dunix -Icsrc csrc/zsockr.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pdf_or_ps.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF tbe.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF xfmatpt.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -Dunix -Icsrc csrc/misc_acnuc.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF addbootstrap.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -Dunix -Icsrc csrc/dnapars.c csrc/dnapars.c: In function 'dnapars': csrc/dnapars.c:1685:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1685 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: csrc/dnapars.c:112:17: warning: 'names' defined but not used [-Wunused-variable] 112 | static boolean *names; | ^~~~~ csrc/dnapars.c:108:16: warning: 'nothing' defined but not used [-Wunused-variable] 108 | static baseptr nothing; | ^~~~~~~ csrc/dnapars.c:81:6: warning: 'weightfilename' defined but not used [-Wunused-variable] 81 | weightfilename[FNMLNGTH]; | ^~~~~~~~~~~~~~ csrc/dnapars.c:80:58: warning: 'intreename' defined but not used [-Wunused-variable] 80 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, | ^~~~~~~~~~ csrc/dnapars.c:80:35: warning: 'outfilename' defined but not used [-Wunused-variable] 80 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, | ^~~~~~~~~~~ csrc/dnapars.c:80:13: warning: 'infilename' defined but not used [-Wunused-variable] 80 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, | ^~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -Dunix -Icsrc csrc/lwl.c csrc/lwl.c: In function 'prefastlwl': csrc/lwl.c:412:1: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 412 | else | ^~~~ csrc/lwl.c:414:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 414 | aa[9] = 14;/* agc S */ | ^~ csrc/lwl.c:417:1: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 417 | else | ^~~~ csrc/lwl.c:419:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 419 | aa[11] = 14;/* agt S */ | ^~ csrc/lwl.c:422:1: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 422 | else | ^~~~ csrc/lwl.c:424:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 424 | aa[13] = 7;/* atc I */ | ^~ csrc/lwl.c:469:1: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 469 | else | ^~~~ csrc/lwl.c:471:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 471 | aa[57] = 10;/* tgc */ | ^~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -Dunix -Icsrc csrc/phyml_util.c csrc/phyml_util.c: In function 'Warn_And_Exit': csrc/phyml_util.c:47:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 47 | fscanf(stdin,"%c",&c); | ^~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -Dunix -Icsrc csrc/bionj.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -Dunix -Icsrc csrc/raa_acnuc.c csrc/raa_acnuc.c: In function 'raa_bit1': csrc/raa_acnuc.c:1083:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable] 1083 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function 'raa_bit0': csrc/raa_acnuc.c:1093:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable] 1093 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function 'raa_copylist': csrc/raa_acnuc.c:1114:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable] 1114 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function 'raa_zerolist': csrc/raa_acnuc.c:1124:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable] 1124 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function 'raa_setliststate': csrc/raa_acnuc.c:1134:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable] 1134 | char *reponse, str_type[3]; | ^~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -Dunix -Icsrc csrc/protpars.c csrc/protpars.c: In function 'protpars': csrc/protpars.c:2097:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 2097 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: csrc/protpars.c:129:12: warning: 'tmpa' defined but not used [-Wunused-variable] 129 | static aas tmpa; | ^~~~ csrc/protpars.c:111:21: warning: 'inseed0' defined but not used [-Wunused-variable] 111 | static long inseed, inseed0; | ^~~~~~~ csrc/protpars.c:111:13: warning: 'inseed' defined but not used [-Wunused-variable] 111 | static long inseed, inseed0; | ^~~~~~ csrc/protpars.c:107:94: warning: 'weightfilename' defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~~~~~ csrc/protpars.c:107:58: warning: 'intreename' defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~ csrc/protpars.c:107:35: warning: 'outfilename' defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~~ csrc/protpars.c:107:13: warning: 'infilename' defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF seaview.cxx seaview.cxx: In function 'int delete_selected_seqs(SEA_VIEW*)': seaview.cxx:1753:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1753 | for(i = 0, j = 0; i< view->tot_seqs; i++) | ^~~ seaview.cxx:1756:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1756 | memcpy(view->col_rank , temp_data, new_tot_seqs * sizeof(char *) ); | ^~~~~~ seaview.cxx: In function 'void colors_callback(Fl_Widget*, void*)': seaview.cxx:1907:15: warning: variable 'item' set but not used [-Wunused-but-set-variable] 1907 | Fl_Menu_Item *item; | ^~~~ seaview.cxx: In function 'void delete_tmp_filename(const char*)': seaview.cxx:636:9: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 636 | system(fname); | ~~~~~~^~~~~~~ seaview.cxx: In function 'char* run_and_close_native_file_chooser(Fl_Native_File_Chooser*, int)': seaview.cxx:2899:45: warning: ignoring return value of 'int chdir(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2899 | if( *last_visited_directory )chdir(last_visited_directory); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF svg.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF unrooted.cxx unrooted.cxx: In function 'hit try_angle_draw(float, int*, int*, float*, int, int, int, int)': unrooted.cxx:635:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 635 | if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4; | ^~ unrooted.cxx:635:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 635 | if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4; | ^~ unrooted.cxx:636:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 636 | if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4; | ^~ unrooted.cxx:636:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 636 | if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4; | ^~ unrooted.cxx:637:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 637 | if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4; | ^~ unrooted.cxx:637:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 637 | if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4; | ^~ unrooted.cxx:638:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 638 | if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4; | ^~ unrooted.cxx:638:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 638 | if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4; | ^~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -Dunix -Icsrc csrc/phylip.c csrc/phylip.c: In function 'scan_eoln': csrc/phylip.c:161:8: warning: variable 'ch' set but not used [-Wunused-but-set-variable] 161 | char ch; | ^~ csrc/phylip.c: In function 'stringnames_new': csrc/phylip.c:2980:8: warning: variable 'len' set but not used [-Wunused-but-set-variable] 2980 | long len, i; | ^~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF trees.cxx trees.cxx: In function 'matrix* Obs_Dist(allseq*, model*)': trees.cxx:1581:16: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable] 1581 | phydbl unc_len; | ^~~~~~~ trees.cxx: In function 'matrix* K80_dist_nogamma(allseq*)': trees.cxx:1723:16: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable] 1723 | phydbl unc_len; | ^~~~~~~ trees.cxx: In function 'void run_phyml_callback(Fl_Widget*, void*)': trees.cxx:1301:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1301 | fread(bootstrap_trees, l, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function 'void command_line_phylogeny(int, char**)': trees.cxx:2794:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2794 | fread(utree, s, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treedraw.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -Dunix -Icsrc csrc/seq.c csrc/seq.c: In function 'collapsetree': csrc/seq.c:4015:11: warning: variable 'j' set but not used [-Wunused-but-set-variable] 4015 | long i, j, index, index2, numd; | ^ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treerecs_draw.cxx treerecs_draw.cxx: In function 'void treerecs_dialog(Fl_Widget*, void*)': treerecs_draw.cxx:489:20: warning: unused variable 'recphylowml_window' [-Wunused-variable] 489 | Fl_Window* recphylowml_window = | ^~~~~~~~~~~~~~~~~~ treerecs_draw.cxx:455:9: warning: unused variable 'status' [-Wunused-variable] 455 | int status = | ^~~~~~ treerecs_draw.cxx: In member function 'virtual void Fl_SVG_Box::draw()': treerecs_draw.cxx:654:13: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 654 | while(i < svgtexts_size){ | ~~^~~~~~~~~~~~~~~ treerecs_draw.cxx: In constructor 'Fl_SVG_Box::Fl_SVG_Box(int, int, int, int, const char*)': treerecs_draw.cxx:738:10: warning: 'Fl_SVG_Box::zoom' will be initialized after [-Wreorder] 738 | double zoom; | ^~~~ treerecs_draw.cxx:736:10: warning: 'double Fl_SVG_Box::svg_shift_x' [-Wreorder] 736 | double svg_shift_x; | ^~~~~~~~~~~ treerecs_draw.cxx:686:13: warning: when initialized here [-Wreorder] 686 | FL_EXPORT Fl_SVG_Box(int x, int y, int w, int h, const char* filename) : | ^~~~~~~~~~ treerecs_draw.cxx:737:10: warning: 'Fl_SVG_Box::svg_shift_y' will be initialized after [-Wreorder] 737 | double svg_shift_y; | ^~~~~~~~~~~ treerecs_draw.cxx:733:16: warning: 'unsigned int Fl_SVG_Box::svgtexts_size' [-Wreorder] 733 | unsigned int svgtexts_size; | ^~~~~~~~~~~~~ treerecs_draw.cxx:686:13: warning: when initialized here [-Wreorder] 686 | FL_EXPORT Fl_SVG_Box(int x, int y, int w, int h, const char* filename) : | ^~~~~~~~~~ treerecs_draw.cxx: In destructor 'virtual Fl_SVG_Box::~Fl_SVG_Box()': treerecs_draw.cxx:722:22: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 722 | for(int i = 0; i < svgtexts_size ; i++) { | ~~^~~~~~~~~~~~~~~ treerecs_draw.cxx: In constructor 'SVG_View_data::SVG_View_data()': treerecs_draw.cxx:762:15: warning: 'SVG_View_data::reconciliation_score_message' will be initialized after [-Wreorder] 762 | const char* reconciliation_score_message; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ treerecs_draw.cxx:759:9: warning: 'float SVG_View_data::total_cost' [-Wreorder] 759 | float total_cost; | ^~~~~~~~~~ treerecs_draw.cxx:764:3: warning: when initialized here [-Wreorder] 764 | SVG_View_data() : | ^~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF FL/Fl_SVG_Image.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -o seaview seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -ldl -lpthread -lz treedraw.cxx:43:16: warning: type 'struct branche' violates the C++ One Definition Rule [-Wodr] 43 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ addbootstrap.cxx:17:16: note: a different type is defined in another translation unit 17 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ addbootstrap.cxx:21:14: note: the first difference of corresponding definitions is field 'bits' 21 | int *bits; | ^ addbootstrap.cxx:17:16: note: a type with different number of fields is defined in another translation unit 17 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ use_mase_files.cxx:115:12: warning: 'isarg' violates the C++ One Definition Rule [-Wodr] 115 | extern int isarg(int argc, char *argv[], const char *arg); | ^ treedraw.cxx:3366:6: note: return value type mismatch 3366 | bool isarg(int argc, char *argv[], const char *arg) | ^ treedraw.cxx:3366:6: note: type 'bool' should match type 'int' treedraw.cxx:3366:6: note: 'isarg' was previously declared here treedraw.cxx:3366:6: note: code may be misoptimized unless '-fno-strict-aliasing' is used In function 'show_dot_plot', inlined from 'edit_menu_callback' at seaview.cxx:2540:15: xfmatpt.cxx:124:21: warning: 'free' called on pointer '_1354->seq1' with nonzero offset 1 [-Wfree-nonheap-object] 124 | free(matpt->seq1+1); | ^ xfmatpt.cxx:125:21: warning: 'free' called on pointer '_1354->seq2' with nonzero offset 1 [-Wfree-nonheap-object] 125 | free(matpt->seq2+1); | ^ In function 'really_close', inlined from 'exit_button_proc' at xfmatpt.cxx:898:18: xfmatpt.cxx:889:5: warning: 'free' called on pointer 'matpt_5(D)->seq1' with nonzero offset 1 [-Wfree-nonheap-object] 889 | free(matpt->seq1 + 1); | ^ xfmatpt.cxx:890:5: warning: 'free' called on pointer 'matpt_5(D)->seq2' with nonzero offset 1 [-Wfree-nonheap-object] 890 | free(matpt->seq2 + 1); | ^ make: Leaving directory '/usr/src/RPM/BUILD/seaview' + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.15744 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/seaview-buildroot + : + /bin/rm -rf -- /usr/src/tmp/seaview-buildroot + PATH=/usr/libexec/rpm-build:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games + cd seaview + mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/seaview + mkdir -p /usr/src/tmp/seaview-buildroot/usr/bin + mkdir -p /usr/src/tmp/seaview-buildroot//usr/share/man/man1 + mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/applications/ + install -m 755 seaview /usr/src/tmp/seaview-buildroot//usr/bin + install -m 644 seaview.html /usr/src/tmp/seaview-buildroot/usr/share/seaview/ + install -m 644 /usr/src/RPM/SOURCES/seaview.desktop /usr/src/tmp/seaview-buildroot/usr/share/applications/ + mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/pixmaps/ + install -m 0644 -p seaview.xpm /usr/src/tmp/seaview-buildroot/usr/share/pixmaps/seaview.xpm + install -m 644 seaview.1 /usr/src/tmp/seaview-buildroot//usr/share/man/man1 + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/seaview-buildroot (auto) Verifying and fixing files in /usr/src/tmp/seaview-buildroot (binconfig,pkgconfig,libtool,desktop,gnuconfig) /usr/share/applications/seaview.desktop: performed minor cleanup: 6c6 < Icon=seaview.xpm --- > Icon=seaview Checking contents of files in /usr/src/tmp/seaview-buildroot/ (default) Compressing files in /usr/src/tmp/seaview-buildroot (auto) Verifying ELF objects in /usr/src/tmp/seaview-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) Hardlinking identical .pyc and .opt-?.pyc files Executing(%check): /bin/sh -e /usr/src/tmp/rpm-tmp.79709 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd seaview + exit 0 Processing files: seaview-5.0.4-alt1 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.79709 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd seaview + DOCDIR=/usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.4 + export DOCDIR + rm -rf /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.4 + /bin/mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.4 + cp -prL seaview.1.xml example.nxs /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.4 + chmod -R go-w /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.4 + chmod -R a+rX /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.4 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.lrv7ZP find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,python3,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.0AscCa find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) Requires: /lib64/ld-linux-x86-64.so.2, libc.so.6(GLIBC_2.11)(64bit), libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.15)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.34)(64bit), libc.so.6(GLIBC_2.4)(64bit), libc.so.6(GLIBC_2.7)(64bit), libfltk.so.2()(64bit) >= set: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, libfltk_images.so.2()(64bit) >= set:jfWg1JaebIlCT0Tk9Z0EM7, libgcc_s.so.1(GCC_3.0)(64bit), libgcc_s.so.1(GCC_3.3.1)(64bit), libm.so.6(GLIBC_2.2.5)(64bit), libm.so.6(GLIBC_2.29)(64bit), libstdc++.so.6(CXXABI_1.3)(64bit), libstdc++.so.6(CXXABI_1.3.8)(64bit), libstdc++.so.6(CXXABI_1.3.9)(64bit), libstdc++.so.6(GLIBCXX_3.4)(64bit), libstdc++.so.6(GLIBCXX_3.4.20)(64bit), libstdc++.so.6(GLIBCXX_3.4.21)(64bit), libz.so.1()(64bit) >= set:kikrfZdDPy1, rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.CkXhzS Creating seaview-debuginfo package Processing files: seaview-debuginfo-5.0.4-alt1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.aZGx13 find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.jxNeVz find-requires: running scripts (debuginfo) Requires: seaview = 5.0.4-alt1, /usr/lib/debug/lib64/ld-linux-x86-64.so.2.debug, debug64(libc.so.6), debug64(libfltk.so.2), debug64(libfltk_images.so.2), debug64(libgcc_s.so.1), debug64(libm.so.6), debug64(libstdc++.so.6), debug64(libz.so.1) Adding to seaview-debuginfo a strict dependency on seaview Wrote: /usr/src/RPM/RPMS/x86_64/seaview-5.0.4-alt1.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/seaview-debuginfo-5.0.4-alt1.x86_64.rpm (w2.lzdio) 20.31user 2.17system 0:18.72elapsed 120%CPU (0avgtext+0avgdata 89312maxresident)k 0inputs+0outputs (0major+785232minor)pagefaults 0swaps 26.78user 5.40system 0:29.41elapsed 109%CPU (0avgtext+0avgdata 105052maxresident)k 0inputs+0outputs (30650major+1102916minor)pagefaults 0swaps --- seaview-5.0.4-alt1.x86_64.rpm.repo 2021-05-26 22:25:55.000000000 +0000 +++ seaview-5.0.4-alt1.x86_64.rpm.hasher 2021-11-22 03:51:39.083911883 +0000 @@ -16,2 +16,3 @@ Requires: libc.so.6(GLIBC_2.3.4)(64bit) +Requires: libc.so.6(GLIBC_2.34)(64bit) Requires: libc.so.6(GLIBC_2.4)(64bit) @@ -22,5 +23,5 @@ Requires: libgcc_s.so.1(GCC_3.0)(64bit) +Requires: libgcc_s.so.1(GCC_3.3.1)(64bit) Requires: libm.so.6(GLIBC_2.2.5)(64bit) Requires: libm.so.6(GLIBC_2.29)(64bit) -Requires: libpthread.so.0(GLIBC_2.2.5)(64bit) Requires: libstdc++.so.6(CXXABI_1.3)(64bit) @@ -31,3 +32,3 @@ Requires: libstdc++.so.6(GLIBCXX_3.4.21)(64bit) -Requires: libz.so.1()(64bit) >= set:khM4g6JBZuPIo4PSZj1 +Requires: libz.so.1()(64bit) >= set:kikrfZdDPy1 Requires: rtld(GNU_HASH) @@ -35,3 +36,3 @@ Provides: seaview = 5.0.4-alt1:sisyphus+272606.100.1.1 -File: /usr/bin/seaview 100755 root:root ce53f1535f3772ff288e95cde88f8373 +File: /usr/bin/seaview 100755 root:root 9378563fd6e4a2f399d93cb71e95bf28 File: /usr/share/applications/seaview.desktop 100644 root:root 8245612f5c1c5c0af83c390b3f0b74e2 @@ -44,2 +45,2 @@ File: /usr/share/seaview/seaview.html 100644 root:root f36140a94c4e5ea66c43fae574f49638 -RPMIdentity: 43ac6ad0e1e99b1084133a743e09ad19f7e85ff8e66523028901e364434606ed2430f552b815f9d5719a794cecb13021cad33bdbda7e703c95c6ae9fbe2c5213 +RPMIdentity: f29fc944105872daa6c23609313a8dd7cf8bcacfa756fd047b39505eff41a45521d92550a2021ea06120ff22dc20ca6c813710333bd37ef1edc7d525544ea24a --- seaview-debuginfo-5.0.4-alt1.x86_64.rpm.repo 2021-05-26 22:25:55.000000000 +0000 +++ seaview-debuginfo-5.0.4-alt1.x86_64.rpm.hasher 2021-11-22 03:51:39.377915168 +0000 @@ -1,4 +1,4 @@ -/usr/lib/debug/.build-id/f7 40755 root:root -/usr/lib/debug/.build-id/f7/fa4e062be61f6f50305414c8433ffaa9099a38 120777 root:root ../../../../bin/seaview -/usr/lib/debug/.build-id/f7/fa4e062be61f6f50305414c8433ffaa9099a38.debug 120777 root:root ../../usr/bin/seaview.debug +/usr/lib/debug/.build-id/b8 40755 root:root +/usr/lib/debug/.build-id/b8/68074d7b3ca21540945ba9270ed73d1a4a147f 120777 root:root ../../../../bin/seaview +/usr/lib/debug/.build-id/b8/68074d7b3ca21540945ba9270ed73d1a4a147f.debug 120777 root:root ../../usr/bin/seaview.debug /usr/lib/debug/usr/bin/seaview.debug 100644 root:root @@ -68,3 +68,2 @@ Requires: debug64(libm.so.6) -Requires: debug64(libpthread.so.0) Requires: debug64(libstdc++.so.6) @@ -74,6 +73,6 @@ Provides: seaview-debuginfo = 5.0.4-alt1:sisyphus+272606.100.1.1 -File: /usr/lib/debug/.build-id/f7 40755 root:root -File: /usr/lib/debug/.build-id/f7/fa4e062be61f6f50305414c8433ffaa9099a38 120777 root:root ../../../../bin/seaview -File: /usr/lib/debug/.build-id/f7/fa4e062be61f6f50305414c8433ffaa9099a38.debug 120777 root:root ../../usr/bin/seaview.debug -File: /usr/lib/debug/usr/bin/seaview.debug 100644 root:root 826d2403754ddc41e38c91f3e8cc16a9 +File: /usr/lib/debug/.build-id/b8 40755 root:root +File: /usr/lib/debug/.build-id/b8/68074d7b3ca21540945ba9270ed73d1a4a147f 120777 root:root ../../../../bin/seaview +File: /usr/lib/debug/.build-id/b8/68074d7b3ca21540945ba9270ed73d1a4a147f.debug 120777 root:root ../../usr/bin/seaview.debug +File: /usr/lib/debug/usr/bin/seaview.debug 100644 root:root 14296a1e5899ab8f3cd76d92029f0589 File: /usr/src/debug/seaview 40755 root:root @@ -136,2 +135,2 @@ File: /usr/src/debug/seaview/xfmatpt.cxx 100644 root:root 29e39edcd957d1537b78da25d5b0b892 -RPMIdentity: a050b8142a2931c80fa35abbba2808dcd7439d9abb44fbdec40e82f2497a8967494ab5bd42de87230c2cbe7f784e7875cef9158c9a3fa80a29bec34bdc1feab2 +RPMIdentity: a3d3771e72aea5bc1f735d72a658630c0762bec3a787fef5713038080f18e28d79c7ce7b487812d7ae0003b2ad7686f39a196d7ad8891874a50a9f4a72345ba8