<86>May 7 05:03:35 userdel[2181725]: delete user 'rooter' <86>May 7 05:03:35 userdel[2181725]: removed shadow group 'rooter' owned by 'rooter' <86>May 7 05:03:35 groupadd[2181742]: group added to /etc/group: name=rooter, GID=567 <86>May 7 05:03:35 groupadd[2181742]: group added to /etc/gshadow: name=rooter <86>May 7 05:03:35 groupadd[2181742]: new group: name=rooter, GID=567 <86>May 7 05:03:35 useradd[2181749]: new user: name=rooter, UID=567, GID=567, home=/root, shell=/bin/bash <86>May 7 05:03:35 userdel[2181776]: delete user 'builder' <86>May 7 05:03:35 userdel[2181776]: removed group 'builder' owned by 'builder' <86>May 7 05:03:35 userdel[2181776]: removed shadow group 'builder' owned by 'builder' <86>May 7 05:03:35 groupadd[2181791]: group added to /etc/group: name=builder, GID=568 <86>May 7 05:03:35 groupadd[2181791]: group added to /etc/gshadow: name=builder <86>May 7 05:03:35 groupadd[2181791]: new group: name=builder, GID=568 <86>May 7 05:03:35 useradd[2181804]: new user: name=builder, UID=568, GID=568, home=/usr/src, shell=/bin/bash warning: Macro %_altdir not found warning: Macro %_altdir not found warning: Macro %_altdir not found warning: Macro %_altdir not found warning: Macro %_altdir not found <13>May 7 05:03:40 rpmi: libidn2-2.3.0-alt1 sisyphus+240846.100.1.2 1573870464 installed <13>May 7 05:03:40 rpmi: libnl3-3.5.0-alt1 sisyphus+237716.100.1.1 1568781467 installed <13>May 7 05:03:40 rpmi: libibverbs-28.0-alt1 sisyphus+246750.100.1.1 1582248727 installed <13>May 7 05:03:40 rpmi: libquadmath0-9.2.1-alt3 sisyphus+245055.100.1.1 1580041305 installed <13>May 7 05:03:40 rpmi: libgfortran5-9.2.1-alt3 sisyphus+245055.100.1.1 1580041305 installed <13>May 7 05:03:40 rpmi: udev-rules-1:245.5-alt1 sisyphus+250810.500.6.1 1588357095 installed <13>May 7 05:03:40 rpmi: librdmacm-28.0-alt1 sisyphus+246750.100.1.1 1582248727 installed <13>May 7 05:03:40 rpmi: rpm-macros-info-install-6.5-alt2 sisyphus+220294.200.2.1 1548933637 installed <13>May 7 05:03:40 rpmi: libnuma-2.0.11-alt1 1450022595 installed <13>May 7 05:03:40 rpmi: libibumad-28.0-alt1 sisyphus+246750.100.1.1 1582248727 installed <13>May 7 05:03:40 rpmi: libmnl-1.0.4-alt2 sisyphus+220683.100.1.1 1549335455 installed <13>May 7 05:03:40 rpmi: gcc-fortran-common-1.4.24-alt3 sisyphus+243033.100.1.1 1576462403 installed <13>May 7 05:03:40 rpmi: liblz4-1:1.9.2-alt1 sisyphus+238585.100.2.2 1570066861 installed <13>May 7 05:03:40 rpmi: libiptables-1.8.4-alt1 sisyphus+246876.100.1.1 1582593434 installed <13>May 7 05:03:40 rpmi: libdevmapper-1.02.171-alt1 sisyphus+249206.100.1.1 1585839583 installed <13>May 7 05:03:40 rpmi: msulogin-1.0-alt1 1366288481 installed <13>May 7 05:03:40 rpmi: mount-2.33.2-alt1 sisyphus+227076.100.1.1 1555076778 installed <13>May 7 05:03:40 rpmi: sysvinit-2.88-alt6 sisyphus+240403.100.2.1 1573520131 installed <13>May 7 05:03:40 rpmi: libnetlink-5.6.0-alt1 sisyphus+250342.100.1.1 1587420296 installed <13>May 7 05:03:40 rpmi: libibmad-28.0-alt1 sisyphus+246750.100.1.1 1582248727 installed <13>May 7 05:03:40 rpmi: libibnetdisc-28.0-alt1 sisyphus+246750.100.1.1 1582248727 installed <13>May 7 05:03:40 rpmi: libnuma-devel-2.0.11-alt1 1450022595 installed <13>May 7 05:03:40 rpmi: libquadmath9-devel-9.2.1-alt3 sisyphus+245055.100.1.1 1580041305 installed <13>May 7 05:03:40 rpmi: libgfortran9-devel-9.2.1-alt3 sisyphus+245055.100.1.1 1580041305 installed <13>May 7 05:03:41 rpmi: gcc9-fortran-9.2.1-alt3 sisyphus+245055.100.1.1 1580041305 installed <13>May 7 05:03:41 rpmi: gcc-fortran-9-alt1 sisyphus+239632.300.3.1 1571789214 installed <13>May 7 05:03:41 rpmi: libquadmath8-devel-8.4.1-alt1 sisyphus+247375.200.3.1 1583429212 installed <13>May 7 05:03:41 rpmi: libgfortran8-devel-8.4.1-alt1 sisyphus+247375.200.3.1 1583429212 installed <13>May 7 05:03:41 rpmi: tex-common-0.2-alt4 1244804096 installed <13>May 7 05:03:41 rpmi: texi2dvi-6.5-alt2 sisyphus+220294.200.2.1 1548933637 installed <13>May 7 05:03:41 rpmi: perl-Unicode-Normalize-1:5.28.2-alt3 sisyphus+246858.100.1.1 1582561863 installed <13>May 7 05:03:41 rpmi: perl-Unicode-EastAsianWidth-12.0-alt1 sisyphus+237401.100.1.1 1568197363 installed <13>May 7 05:03:41 rpmi: perl-Text-Unidecode-1.30-alt1 1480505027 installed <13>May 7 05:03:41 rpmi: perl-Pod-Escapes-1.07-alt1 1418767892 installed <13>May 7 05:03:41 rpmi: perl-Filter-1.59-alt1.1 sisyphus+219907.400.1.1 1548343225 installed <13>May 7 05:03:42 rpmi: perl-Encode-3.04-alt1 sisyphus+247835.100.1.1 1584190284 installed <13>May 7 05:03:42 rpmi: perl-libintl-1.31-alt1.1 sisyphus+219907.6300.1.1 1548352427 installed <13>May 7 05:03:42 rpmi: perl-Pod-Simple-3.40-alt1 sisyphus+239861.100.1.1 1572267919 installed <13>May 7 05:03:42 rpmi: makeinfo-6.5-alt2 sisyphus+220294.200.2.1 1548933637 installed <13>May 7 05:03:42 rpmi: libsz2-2.1-alt4 1300649105 installed <13>May 7 05:03:42 rpmi: zlib-devel-1.2.11-alt1 sisyphus+221902.6000.4.1 1550600768 installed <13>May 7 05:03:42 rpmi: tcsh-6.20.00-alt2 1503603377 installed <13>May 7 05:03:42 rpmi: rpm-macros-mpi-selector-1.0.3-alt3 1504498675 installed <13>May 7 05:03:42 rpmi: mpi-selector-1.0.3-alt3 1504498675 installed <13>May 7 05:03:42 rpmi: openmpi-2.0.1-alt8 sisyphus+229856.100.1.1 1558540100 installed <13>May 7 05:03:42 rpmi: libpnetcdf-1.8.1-alt2.1 sisyphus+249301.100.1.1 1585929038 installed <13>May 7 05:03:42 rpmi: libpci-3.6.4-alt1 sisyphus+247727.100.1.1 1584020246 installed <13>May 7 05:03:42 rpmi: pciids-20200424-alt1 sisyphus+250589.100.1.1 1587769612 installed <13>May 7 05:03:42 rpmi: pciutils-3.6.4-alt1 sisyphus+247727.100.1.1 1584020246 installed <13>May 7 05:03:42 rpmi: libexpat-2.2.4-alt1 1503305341 installed <13>May 7 05:03:42 rpmi: publicsuffix-list-dafsa-20200401-alt1 sisyphus+249161.100.1.1 1585815856 installed <13>May 7 05:03:42 rpmi: libpsl-0.21.0-alt2 sisyphus+237083.100.1.1 1567531663 installed <13>May 7 05:03:42 rpmi: libnghttp2-1.40.0-alt1 sisyphus+244416.100.1.1 1579241975 installed <13>May 7 05:03:42 rpmi: libverto-0.3.0-alt1_7 sisyphus+225932.100.1.1 1553994917 installed <13>May 7 05:03:42 rpmi: libkeyutils-1.6-alt2 sisyphus+226520.100.2.1 1554512088 installed <13>May 7 05:03:42 rpmi: libcom_err-1.44.6-alt1 sisyphus+224154.100.1.1 1552091653 installed <13>May 7 05:03:42 rpmi: libbrotlicommon-1.0.7-alt1 sisyphus+226738.100.2.1 1554554565 installed <13>May 7 05:03:42 rpmi: libbrotlidec-1.0.7-alt1 sisyphus+226738.100.2.1 1554554565 installed <13>May 7 05:03:42 rpmi: libatm-2.5.1-alt6 sisyphus+234093.100.1.1 1562575879 installed <13>May 7 05:03:42 rpmi: chrooted-0.3.11-alt1 sisyphus+249336.100.1.1 1585959537 installed <13>May 7 05:03:42 rpmi: chrooted-resolv-0.3.1-alt2 1176155257 installed <13>May 7 05:03:42 rpmi: gcc-c++-common-1.4.24-alt3 sisyphus+243033.100.1.1 1576462403 installed <13>May 7 05:03:43 rpmi: libstdc++9-devel-9.2.1-alt3 sisyphus+245055.100.1.1 1580041305 installed <13>May 7 05:03:44 rpmi: gcc9-c++-9.2.1-alt3 sisyphus+245055.100.1.1 1580041305 installed <13>May 7 05:03:44 rpmi: gcc-c++-9-alt1 sisyphus+239632.300.3.1 1571789214 installed <13>May 7 05:03:44 rpmi: udev-hwdb-1:245.5-alt1 sisyphus+250810.500.6.1 1588357095 installed <13>May 7 05:03:44 rpmi: libseccomp-2.4.2-alt2 sisyphus+245295.100.1.1 1580406862 installed <13>May 7 05:03:44 rpmi: libpcre2-10.34-alt1 sisyphus+241619.100.1.1 1574686792 installed <13>May 7 05:03:44 rpmi: libjson-c4-0.13.1-alt1 sisyphus+226468.100.8.1 1554723265 installed <13>May 7 05:03:44 rpmi: libargon2-20190702-alt1 sisyphus+235300.100.1.1 1564606506 installed <13>May 7 05:03:44 rpmi: libgpg-error-1.36-alt1 sisyphus+225621.300.1.1 1553521088 installed <13>May 7 05:03:44 rpmi: libgcrypt20-1.8.5-alt3 sisyphus+239622.100.1.1 1571746563 installed <13>May 7 05:03:44 rpmi: libsystemd-1:245.5-alt1 sisyphus+250810.500.6.1 1588357095 installed <13>May 7 05:03:44 rpmi: hwclock-1:2.33.2-alt1 sisyphus+227076.100.1.1 1555076778 installed <13>May 7 05:03:44 rpmi: hashalot-0.3-alt1.qa1 1366323553 installed <13>May 7 05:03:44 rpmi: losetup-2.33.2-alt1 sisyphus+227076.100.1.1 1555076778 installed <13>May 7 05:03:44 rpmi: lsblk-2.33.2-alt1 sisyphus+227076.100.1.1 1555076778 installed <13>May 7 05:03:44 rpmi: libp11-kit-0.23.15-alt1 sisyphus+226408.100.2.1 1554288187 installed <13>May 7 05:03:44 rpmi: libtasn1-4.16.0-alt1 sisyphus+245480.100.1.1 1580825069 installed <13>May 7 05:03:44 rpmi: bc-1:1.07.1-alt1 sisyphus+221902.700.4.1 1550587848 installed <13>May 7 05:03:44 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>May 7 05:03:44 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>May 7 05:03:45 rpmi: libhdf5-8-mpi-1.8.13-alt4 sisyphus+223496.100.1.1 1551620824 installed <13>May 7 05:03:45 rpmi: ca-certificates-2020.01.23-alt1 sisyphus+244791.300.2.1 1580285500 installed <13>May 7 05:03:45 rpmi: ca-trust-0.1.2-alt1 sisyphus+233348.100.1.1 1561653823 installed <13>May 7 05:03:45 rpmi: p11-kit-trust-0.23.15-alt1 sisyphus+226408.100.2.1 1554288187 installed <13>May 7 05:03:45 rpmi: libcrypto1.1-1.1.1g-alt1 sisyphus+249982.60.8.1 1587743567 installed <13>May 7 05:03:45 rpmi: libkmod-26-alt1 sisyphus+226359.100.1.1 1554129988 installed <13>May 7 05:03:45 rpmi: libssl1.1-1.1.1g-alt1 sisyphus+249982.60.8.1 1587743567 installed <86>May 7 05:03:45 groupadd[2193779]: group added to /etc/group: name=_keytab, GID=499 <86>May 7 05:03:45 groupadd[2193779]: group added to /etc/gshadow: name=_keytab <86>May 7 05:03:45 groupadd[2193779]: new group: name=_keytab, GID=499 <13>May 7 05:03:45 rpmi: libkrb5-1.17.1-alt1 sisyphus+242784.100.1.1 1576137160 installed <13>May 7 05:03:45 rpmi: kmod-26-alt1 sisyphus+226359.100.1.1 1554129988 installed <86>May 7 05:03:45 groupadd[2193929]: group added to /etc/group: name=sasl, GID=498 <86>May 7 05:03:45 groupadd[2193929]: group added to /etc/gshadow: name=sasl <86>May 7 05:03:45 groupadd[2193929]: new group: name=sasl, GID=498 <13>May 7 05:03:45 rpmi: libsasl2-3-2.1.27-alt2 sisyphus+228101.100.1.1 1556139861 installed <13>May 7 05:03:45 rpmi: libldap-2.4.48-alt3 sisyphus+238816.100.1.1 1570449061 installed <13>May 7 05:03:45 rpmi: libcurl-7.69.1-alt1 sisyphus+247613.100.1.1 1583913866 installed <13>May 7 05:03:45 rpmi: libnetcdf11-mpi-4.4.1.1-alt2 sisyphus+238557.100.1.1 1570025968 installed <13>May 7 05:03:45 rpmi: libcryptsetup-2.2.2-alt1 sisyphus+242851.300.2.1 1576248417 installed <13>May 7 05:03:45 rpmi: startup-0.9.9.9-alt1 sisyphus+242122.100.1.1 1575282386 installed <13>May 7 05:03:45 rpmi: systemd-utils-1:245.5-alt1 sisyphus+250810.500.6.1 1588357095 installed <13>May 7 05:03:45 rpmi: dmsetup-1.02.171-alt1 sisyphus+249206.100.1.1 1585839583 installed <86>May 7 05:03:45 groupadd[2194515]: group added to /etc/group: name=tape, GID=497 <86>May 7 05:03:45 groupadd[2194515]: group added to /etc/gshadow: name=tape <86>May 7 05:03:45 groupadd[2194515]: new group: name=tape, GID=497 <86>May 7 05:03:45 groupadd[2194531]: group added to /etc/group: name=dialout, GID=496 <86>May 7 05:03:45 groupadd[2194531]: group added to /etc/gshadow: name=dialout <86>May 7 05:03:45 groupadd[2194531]: new group: name=dialout, GID=496 <86>May 7 05:03:45 groupadd[2194544]: group added to /etc/group: name=input, GID=495 <86>May 7 05:03:45 groupadd[2194544]: group added to /etc/gshadow: name=input <86>May 7 05:03:45 groupadd[2194544]: new group: name=input, GID=495 <86>May 7 05:03:45 groupadd[2194553]: group added to /etc/group: name=video, GID=494 <86>May 7 05:03:45 groupadd[2194553]: group added to /etc/gshadow: name=video <86>May 7 05:03:45 groupadd[2194553]: new group: name=video, GID=494 <86>May 7 05:03:45 groupadd[2194566]: group added to /etc/group: name=render, GID=493 <86>May 7 05:03:45 groupadd[2194566]: group added to /etc/gshadow: name=render <86>May 7 05:03:45 groupadd[2194566]: new group: name=render, GID=493 <13>May 7 05:03:45 rpmi: udev-1:245.5-alt1 sisyphus+250810.500.6.1 1588357095 installed <86>May 7 05:03:45 groupadd[2194768]: group added to /etc/group: name=iputils, GID=492 <86>May 7 05:03:45 groupadd[2194768]: group added to /etc/gshadow: name=iputils <86>May 7 05:03:45 groupadd[2194768]: new group: name=iputils, GID=492 <86>May 7 05:03:45 useradd[2194791]: new user: name=iputils, UID=499, GID=492, home=/dev/null, shell=/dev/null <86>May 7 05:03:45 groupadd[2194811]: group added to /etc/group: name=netadmin, GID=491 <86>May 7 05:03:45 groupadd[2194811]: group added to /etc/gshadow: name=netadmin <86>May 7 05:03:45 groupadd[2194811]: new group: name=netadmin, GID=491 <13>May 7 05:03:45 rpmi: iputils-20190709-alt2 sisyphus+241803.100.2.1 1575176407 installed sysctl: cannot stat /proc/sys/net/ipv4/ping_group_range: No such file or directory <13>May 7 05:03:46 rpmi: iproute2-5.6.0-alt1 sisyphus+250342.100.1.1 1587420296 installed <13>May 7 05:03:46 rpmi: rdma-core-28.0-alt1 sisyphus+246750.100.1.1 1582248727 installed <13>May 7 05:03:46 rpmi: ibacm-28.0-alt1 sisyphus+246750.100.1.1 1582248727 installed <13>May 7 05:03:46 rpmi: rdma-core-devel-28.0-alt1 sisyphus+246750.100.1.1 1582248727 installed <13>May 7 05:03:46 rpmi: openmpi-devel-2.0.1-alt8 sisyphus+229856.100.1.1 1558540100 installed <13>May 7 05:03:46 rpmi: libhdf5-mpi-devel-1.8.13-alt4 sisyphus+223496.100.1.1 1551620824 installed <13>May 7 05:03:46 rpmi: libnetcdf-mpi-devel-4.4.1.1-alt2 sisyphus+238557.100.1.1 1570025968 installed <13>May 7 05:03:46 rpmi: libcurl-devel-7.69.1-alt1 sisyphus+247613.100.1.1 1583913866 installed <13>May 7 05:03:46 rpmi: libexpat-devel-2.2.4-alt1 1503305341 installed <13>May 7 05:03:46 rpmi: texinfo-6.5-alt2 sisyphus+220294.200.2.1 1548933637 installed <13>May 7 05:03:46 rpmi: flex-2.6.4.0.88.9801-alt1 sisyphus+221902.2300.4.1 1550596258 installed Building target platforms: x86_64 Building for target x86_64 Wrote: /usr/src/in/nosrpm/libnetcdf_c++-4-mpi-4.2-alt4.nosrc.rpm Installing libnetcdf_c++-4-mpi-4.2-alt4.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.10533 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf libnetcdf_c++-4-mpi-4.2 + echo 'Source #0 (libnetcdf_c++-4-mpi-4.2.tar):' Source #0 (libnetcdf_c++-4-mpi-4.2.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/libnetcdf_c++-4-mpi-4.2.tar + cd libnetcdf_c++-4-mpi-4.2 + /bin/chmod -c -Rf u+rwX,go-w . + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.46360 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd libnetcdf_c++-4-mpi-4.2 + mpi-selector --set openmpi + source /usr/lib64/openmpi/bin/mpivars.sh ++ grep -q /usr/lib64/openmpi/bin ++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ PATH=/usr/lib64/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ export PATH ++ echo ++ grep -q /usr/lib64/openmpi/lib ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ echo ++ grep -q /usr/lib64/openmpi/man ++ MANPATH=/usr/lib64/openmpi/man: ++ export MANPATH + export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + autoreconf -fisv autoreconf-default: Entering directory `.' autoreconf-default: configure.ac: not using Gettext autoreconf-default: running: aclocal --force -I m4 configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5428: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:816: _LT_LANG is expanded from... m4/libtool.m4:799: LT_LANG is expanded from... m4/libtool.m4:827: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5428: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:816: _LT_LANG is expanded from... m4/libtool.m4:799: LT_LANG is expanded from... m4/libtool.m4:827: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level autoreconf-default: configure.ac: tracing configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5428: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:816: _LT_LANG is expanded from... m4/libtool.m4:799: LT_LANG is expanded from... m4/libtool.m4:827: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level autoreconf-default: running: libtoolize --force --install libtoolize-default: putting auxiliary files in '.'. libtoolize-default: linking file './config.guess' libtoolize-default: linking file './config.sub' libtoolize-default: linking file './install-sh' libtoolize-default: linking file './ltmain.sh' libtoolize-default: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize-default: linking file 'm4/libtool.m4' libtoolize-default: linking file 'm4/ltoptions.m4' libtoolize-default: linking file 'm4/ltsugar.m4' libtoolize-default: linking file 'm4/ltversion.m4' libtoolize-default: linking file 'm4/lt~obsolete.m4' autoreconf-default: configure.ac: not using Intltool autoreconf-default: configure.ac: not using gtk-doc autoreconf-default: running: /usr/bin/autoconf-2.60 --force autoreconf-default: running: /usr/bin/autoheader-2.60 --force autoreconf-default: running: automake --add-missing --force-missing configure.ac:33: warning: support for distribution archives compressed with legacy program 'compress' is deprecated. configure.ac:33: It will be removed in Automake 2.0 configure.ac:95: installing './compile' configure.ac:33: installing './missing' cxx/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' autoreconf-default: Leaving directory `.' + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export CFLAGS + CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export CXXFLAGS + FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export FFLAGS + '[' -n '' ']' ++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' ++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g' + ASFLAGS= + export ASFLAGS + export lt_cv_deplibs_check_method=pass_all + lt_cv_deplibs_check_method=pass_all + readlink -e -- ./configure + xargs -ri dirname -- '{}' + xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n' + sort -u + xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess + ./configure --build=x86_64-alt-linux --host=x86_64-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --enable-shared --enable-static=no --bindir=/usr/lib64/openmpi/bin --libdir=/usr/lib64/openmpi/lib --includedir=/usr/lib64/openmpi/include configure: WARNING: unrecognized options: --without-included-gettext configure: netCDF-cxx 4.2 checking build system type... x86_64-alt-linux-gnu checking host system type... x86_64-alt-linux-gnu checking target system type... x86_64-alt-linux-gnu checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes configure: checking user options checking whether extra valgrind tests should be run... no checking whether netCDF extra tests should be run (developers only)... no checking whether large file (> 2GB) tests should be run... no checking where to put large temp files if large file tests are run... . configure: finding C++ compiler (will not be used if C++ API is not desired) checking for x86_64-alt-linux-g++... x86_64-alt-linux-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether x86_64-alt-linux-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-alt-linux-g++... none configure: setting up libtool checking how to print strings... printf checking for x86_64-alt-linux-gcc... x86_64-alt-linux-gcc checking whether we are using the GNU C compiler... yes checking whether x86_64-alt-linux-gcc accepts -g... yes checking for x86_64-alt-linux-gcc option to accept ISO C89... none needed checking whether x86_64-alt-linux-gcc understands -c and -o together... yes checking dependency style of x86_64-alt-linux-gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by x86_64-alt-linux-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-alt-linux-gnu file names to x86_64-alt-linux-gnu format... func_convert_file_noop checking how to convert x86_64-alt-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-alt-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... (cached) pass_all checking for x86_64-alt-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-alt-linux-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for x86_64-alt-linux-strip... no checking for strip... strip checking for x86_64-alt-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from x86_64-alt-linux-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-alt-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... x86_64-alt-linux-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-alt-linux-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-alt-linux-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-alt-linux-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-alt-linux-gcc static flag -static works... no checking if x86_64-alt-linux-gcc supports -c -o file.o... yes checking if x86_64-alt-linux-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-alt-linux-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... x86_64-alt-linux-g++ -E checking for ld used by x86_64-alt-linux-g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-alt-linux-g++ option to produce PIC... -fPIC -DPIC checking if x86_64-alt-linux-g++ PIC flag -fPIC -DPIC works... yes checking if x86_64-alt-linux-g++ static flag -static works... no checking if x86_64-alt-linux-g++ supports -c -o file.o... yes checking if x86_64-alt-linux-g++ supports -c -o file.o... (cached) yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: finding other utilities checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking netcdf.h usability... yes checking netcdf.h presence... no configure: WARNING: netcdf.h: accepted by the compiler, rejected by the preprocessor! configure: WARNING: netcdf.h: proceeding with the compiler's result checking for netcdf.h... yes checking for library containing nc_open... -lnetcdf checking for nc_def_opaque... yes checking for nccreate... yes checking for nc_set_log_level... no checking for nc_use_parallel_enabled... yes configure: generating header files and makefiles checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating man4/Makefile config.status: creating cxx/Makefile config.status: creating examples/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --without-included-gettext + make -j8 make all-recursive Making all in cxx make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' /bin/sh ../libtool --tag=CXX --mode=compile x86_64-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o libnetcdf_c___la-ncvalues.lo `test -f 'ncvalues.cpp' || echo './'`ncvalues.cpp libtool: compile: x86_64-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c ncvalues.cpp -fPIC -DPIC -o .libs/libnetcdf_c___la-ncvalues.o make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' /bin/sh ../libtool --tag=CXX --mode=compile x86_64-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o libnetcdf_c___la-netcdf.lo `test -f 'netcdf.cpp' || echo './'`netcdf.cpp libtool: compile: x86_64-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c netcdf.cpp -fPIC -DPIC -o .libs/libnetcdf_c___la-netcdf.o netcdf.cpp: In member function 'int NcVar::num_atts() const': netcdf.cpp:650:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 650 | if (the_file->is_valid()) | ^ make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' /bin/sh ../libtool --tag=CXX --mode=link x86_64-alt-linux-g++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -version-number 4:2:0 -o libnetcdf_c++.la -rpath /usr/lib64/openmpi/lib libnetcdf_c___la-netcdf.lo libnetcdf_c___la-ncvalues.lo -lnetcdf libtool: link: x86_64-alt-linux-g++ -fPIC -DPIC -shared -nostdlib /usr/lib64/gcc/x86_64-alt-linux/9/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-alt-linux/9/crtbeginS.o .libs/libnetcdf_c___la-netcdf.o .libs/libnetcdf_c___la-ncvalues.o -lnetcdf -L/usr/lib64/gcc/x86_64-alt-linux/9 -L/usr/lib64/gcc/x86_64-alt-linux/9/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/9/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib64/gcc/x86_64-alt-linux/9/crtendS.o /usr/lib64/gcc/x86_64-alt-linux/9/../../../../lib64/crtn.o -g -O2 -Wl,-soname -Wl,libnetcdf_c++.so.4 -o .libs/libnetcdf_c++.so.4.2.0 libtool: link: (cd ".libs" && rm -f "libnetcdf_c++.so.4" && ln -s "libnetcdf_c++.so.4.2.0" "libnetcdf_c++.so.4") libtool: link: (cd ".libs" && rm -f "libnetcdf_c++.so" && ln -s "libnetcdf_c++.so.4.2.0" "libnetcdf_c++.so") libtool: link: ( cd ".libs" && rm -f "libnetcdf_c++.la" && ln -s "../libnetcdf_c++.la" "libnetcdf_c++.la" ) make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' Making all in examples make[2]: Nothing to be done for 'all'. Making all in man4 make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' Updating ./version-cxx.texi make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.86928 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot + : + /bin/rm -rf -- /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot + cd libnetcdf_c++-4-mpi-4.2 + source /usr/lib64/openmpi/bin/mpivars.sh ++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ grep -q /usr/lib64/openmpi/bin ++ PATH=/usr/lib64/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ export PATH ++ echo ++ grep -q /usr/lib64/openmpi/lib ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ echo ++ grep -q /usr/lib64/openmpi/man ++ MANPATH=/usr/lib64/openmpi/man: ++ export MANPATH + export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + make 'INSTALL=/bin/install -p' install DESTDIR=/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot make: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' Making install in cxx make[1]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' /bin/mkdir -p '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib' /bin/sh ../libtool --mode=install /bin/install -p libnetcdf_c++.la '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib' libtool: install: /bin/install -p .libs/libnetcdf_c++.so.4.2.0 /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib/libnetcdf_c++.so.4.2.0 libtool: install: (cd /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib && { ln -s -f libnetcdf_c++.so.4.2.0 libnetcdf_c++.so.4 || { rm -f libnetcdf_c++.so.4 && ln -s libnetcdf_c++.so.4.2.0 libnetcdf_c++.so.4; }; }) libtool: install: (cd /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib && { ln -s -f libnetcdf_c++.so.4.2.0 libnetcdf_c++.so || { rm -f libnetcdf_c++.so && ln -s libnetcdf_c++.so.4.2.0 libnetcdf_c++.so; }; }) libtool: install: /bin/install -p .libs/libnetcdf_c++.lai /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib/libnetcdf_c++.la libtool: warning: remember to run 'libtool --finish /usr/lib64/openmpi/lib' /bin/mkdir -p '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include' /bin/install -p -m 644 netcdfcpp.h ncvalues.h netcdf.hh '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include' make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' make[1]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' Making install in examples make[1]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' make[1]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' Making install in man4 make[1]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (/bin/sh /usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/missing makeinfo --version) >/dev/null 2>&1; then \ for f in netcdf-cxx.info netcdf-cxx.info-[0-9] netcdf-cxx.info-[0-9][0-9] netcdf-cxx.i[0-9] netcdf-cxx.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if /bin/sh /usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/missing makeinfo -I . \ -o netcdf-cxx.info netcdf-cxx.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./netcdf-cxx.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc netcdf-cxx.texi:8: warning: @setcontentsaftertitlepage is obsolete; move your @contents command if you want the contents after the title page ./defines.texi:86: warning: multiple @setchapternewpage make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' make[2]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/info' /bin/install -p -m 644 ./netcdf-cxx.info '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/info' make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' make[1]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' make[1]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[2]: Nothing to be done for 'install-exec-am'. make install-data-hook make[3]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' +-------------------------------------------------------------+ | Congratulations! You have successfully installed the netCDF | | C++ Libaray | | | | CAUTION: | | | | If you have not already run "make check", then we strongly | | recommend you do so. It does not take very long. | | | | Before using netCDF to store important data, test your | | build with "make check". | | | | NetCDF is tested nightly on many platforms at Unidata | | but your platform is probably different in some ways. | | | | If any tests fail, please see the netCDF web site: | | http://www.unidata.ucar.edu/software/netcdf/ | | | | NetCDF is developed and maintained at the Unidata Program | | Center. Unidata provides a broad array of data and software | | tools for use in geoscience education and research. | | http://www.unidata.ucar.edu | +-------------------------------------------------------------+ make[3]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[1]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' + install -d /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf + mv /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/ncvalues.h /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf.hh /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdfcpp.h /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf/ + rm -f /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib/libnetcdf_c++.la + install -d /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/etc/alternatives/packages.d + mkdir -p /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64 + pushd /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib ~/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib ~/RPM/BUILD/libnetcdf_c++-4-mpi-4.2 + for i in libnetcdf_c++.so.* + ln -s ../../usr/lib64/openmpi/lib/libnetcdf_c++.so.4 /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/ + echo '/usr/lib64/libnetcdf_c++.so.4 /usr/lib64/openmpi/lib/libnetcdf_c++.so.4 30' + for i in libnetcdf_c++.so.* + ln -s ../../usr/lib64/openmpi/lib/libnetcdf_c++.so.4.2.0 /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/ + echo '/usr/lib64/libnetcdf_c++.so.4.2.0 /usr/lib64/openmpi/lib/libnetcdf_c++.so.4.2.0 30' ++ ls libnetcdf_c++.so + for i in $(ls *.so) + echo '/usr/lib64/libnetcdf_c++.so /usr/lib64/openmpi/lib/libnetcdf_c++.so 30' + popd ~/RPM/BUILD/libnetcdf_c++-4-mpi-4.2 + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (auto) mode of './usr/lib64/openmpi/lib/libnetcdf_c++.so.4.2.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) Verifying and fixing files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (binconfig,pkgconfig,libtool,desktop) Checking contents of files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/ (default) Compressing files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (auto) Verifying info files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/info (normal) Adjusting library links in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot ./usr/lib64: ./usr/lib64/openmpi/lib: libnetcdf_c++.so.4 -> libnetcdf_c++.so.4.2.0 Verifying ELF objects in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) Hardlinking identical .pyc and .pyo files Processing files: libnetcdf_c++-4-mpi-4.2-alt4 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.20512 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd libnetcdf_c++-4-mpi-4.2 + DOCDIR=/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + export DOCDIR + rm -rf /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + /bin/mkdir -p /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + cp -prL COPYRIGHT /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + chmod -R go-w /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + chmod -R a+rX /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.bmNNVw find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) lib.prov: /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/libnetcdf_c++.so.4: 468 symbols, 19 bpp warning: hash collision: _ZN13NcValues_longC1ERKS_ _ZN5NcVar3putEPKllllll warning: hash collision: _ZN13NcValues_longC1ElPKl _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.X3teMx find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services) ++ /bin/sed -e '/^debug.*(libnetcdf\.so.*/s/^/libnetcdf11-mpi-debuginfo\t/' Provides: libnetcdf_c++-mpi = 4.2-alt4, libnetcdf_c++-4-mpi = 4.2-alt4, /usr/lib64/libnetcdf_c++.so.4 = 30, /usr/lib64/libnetcdf_c++.so.4.2.0 = 30, libnetcdf_c++.so.4()(64bit) = set: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 Requires: libhdf5-8-mpi, libnetcdf11-mpi, /etc/alternatives/packages.d, libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.4)(64bit), libgcc_s.so.1(GCC_3.0)(64bit), libnetcdf.so.11()(64bit) >= set:oitpZH0nFmdtO6DUe5cR2i5WHqrmak4Z29VKNABIkQOKpVZ2GUvgXAeJRbmn4GGhQZ6dr3o2FldfilfTZk3kiqAQIID0L6bECbWHsxaIUaOMkSb11wtwDYWwrZFARMrxUX4cC5sBEZhQ5qkCuct8N00ZcHcjYHDAeJpg7GSTiC2, libstdc++.so.6(CXXABI_1.3)(64bit), libstdc++.so.6(CXXABI_1.3.8)(64bit), libstdc++.so.6(CXXABI_1.3.9)(64bit), libstdc++.so.6(GLIBCXX_3.4)(64bit), libstdc++.so.6(GLIBCXX_3.4.11)(64bit), libstdc++.so.6(GLIBCXX_3.4.21)(64bit), libstdc++.so.6(GLIBCXX_3.4.9)(64bit), rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Requires(post): alternatives Requires(preun): alternatives Conflicts: libnetcdf_c++ < 4.0.1-alt6, libnetcdf_c++-4-mpi < 4.2-alt4 Obsoletes: libnetcdf_c++-4-mpi < 4.2-alt4 Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.4iPfWy Creating libnetcdf_c++-4-mpi-debuginfo package Processing files: libnetcdf_c++-mpi-devel-4.2-alt4 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.FNLcLz find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.WuhTuw find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services) In file included from /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf/netcdfcpp.h:13, from /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf/netcdf.hh:1: /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf/ncvalues.h:13:10: fatal error: iostream: No such file or directory 13 | #include | ^~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf/netcdf.hh: cpp failed, trying c++ mode ++ /bin/sed -e '/^debug.*(libnetcdf\.so.*/s/^/libnetcdf11-mpi-debuginfo\t/' Provides: /usr/lib64/libnetcdf_c++.so = 30 Requires: libnetcdf_c++-4-mpi = 4.2-alt4, libnetcdf-mpi-devel, /etc/alternatives/packages.d, /usr/lib64/openmpi/lib/libnetcdf_c++.so.4.2.0 Requires(post): alternatives Requires(preun): alternatives Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.pDtMxx Processing files: libnetcdf_c++-4-mpi-doc-4.2-alt4 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.23027 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd libnetcdf_c++-4-mpi-4.2 + DOCDIR=/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + export DOCDIR + rm -rf /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + /bin/mkdir -p /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + cp -prL man4/netcdf-cxx.html man4/netcdf-cxx.pdf examples /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + chmod -R go-w /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + chmod -R a+rX /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.HhIahw find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.xxsvcy find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services) Conflicts: libnetcdf_c++-4-seq-doc Processing files: libnetcdf_c++-4-mpi-debuginfo-4.2-alt4 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.ZkMPew find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.NWCcix find-requires: running scripts (debuginfo) ++ /bin/sed -e '/^debug.*(libnetcdf\.so.*/s/^/libnetcdf11-mpi-debuginfo\t/' --- find-requires-deps 2020-05-07 05:04:39.171701225 +0000 +++ filter-requires-deps 2020-05-07 05:04:39.175701106 +0000 @@ -2,3 +2,3 @@ debug64(libgcc_s.so.1) -debug64(libnetcdf.so.11) +libnetcdf11-mpi-debuginfo debug64(libnetcdf.so.11) debug64(libstdc++.so.6) Provides: debug64(libnetcdf_c++.so.4) Requires: libnetcdf_c++-4-mpi = 4.2-alt4, debug64(libc.so.6), debug64(libgcc_s.so.1), libnetcdf11-mpi-debuginfo, debug64(libnetcdf.so.11), debug64(libstdc++.so.6) Removing 1 extra deps from libnetcdf_c++-mpi-devel due to dependency on libnetcdf_c++-4-mpi Removing 2 extra deps from libnetcdf_c++-mpi-devel due to repentancy on libnetcdf_c++-4-mpi Wrote: /usr/src/RPM/RPMS/x86_64/libnetcdf_c++-4-mpi-4.2-alt4.x86_64.rpm Wrote: /usr/src/RPM/RPMS/x86_64/libnetcdf_c++-mpi-devel-4.2-alt4.x86_64.rpm Wrote: /usr/src/RPM/RPMS/noarch/libnetcdf_c++-4-mpi-doc-4.2-alt4.noarch.rpm Wrote: /usr/src/RPM/RPMS/x86_64/libnetcdf_c++-4-mpi-debuginfo-4.2-alt4.x86_64.rpm 25.94user 8.59system 0:44.96elapsed 76%CPU (0avgtext+0avgdata 90000maxresident)k 0inputs+0outputs (0major+1307587minor)pagefaults 0swaps 39.86user 16.29system 1:09.62elapsed 80%CPU (0avgtext+0avgdata 109352maxresident)k 5264inputs+0outputs (0major+1866009minor)pagefaults 0swaps --- libnetcdf_c++-4-mpi-4.2-alt4.x86_64.rpm.repo 2017-08-29 12:17:15.000000000 +0000 +++ libnetcdf_c++-4-mpi-4.2-alt4.x86_64.rpm.hasher 2020-05-07 05:04:41.497632081 +0000 @@ -11,3 +11,2 @@ Requires: /etc/alternatives/packages.d -Requires: libc.so.6(GLIBC_2.14)(64bit) Requires: libc.so.6(GLIBC_2.2.5)(64bit)