<86>Dec 8 01:48:28 userdel[6367]: delete user 'rooter' <86>Dec 8 01:48:28 userdel[6367]: removed shadow group 'rooter' owned by 'rooter' <86>Dec 8 01:48:28 groupadd[6389]: group added to /etc/group: name=rooter, GID=552 <86>Dec 8 01:48:28 groupadd[6389]: group added to /etc/gshadow: name=rooter <86>Dec 8 01:48:28 groupadd[6389]: new group: name=rooter, GID=552 <86>Dec 8 01:48:28 useradd[6418]: new user: name=rooter, UID=552, GID=552, home=/root, shell=/bin/bash <86>Dec 8 01:48:28 userdel[6464]: delete user 'builder' <86>Dec 8 01:48:28 userdel[6464]: removed group 'builder' owned by 'builder' <86>Dec 8 01:48:28 userdel[6464]: removed shadow group 'builder' owned by 'builder' <86>Dec 8 01:48:28 groupadd[6488]: group added to /etc/group: name=builder, GID=553 <86>Dec 8 01:48:28 groupadd[6488]: group added to /etc/gshadow: name=builder <86>Dec 8 01:48:28 groupadd[6488]: new group: name=builder, GID=553 <86>Dec 8 01:48:28 useradd[6517]: new user: name=builder, UID=553, GID=553, home=/usr/src, shell=/bin/bash warning: Macro %_altdir not found warning: Macro %_altdir not found warning: Macro %_altdir not found warning: Macro %_altdir not found warning: Macro %_altdir not found <13>Dec 8 01:48:47 rpmi: libquadmath0-8.2.1-alt1 sisyphus.214000.20 1542662172 installed <13>Dec 8 01:48:47 rpmi: libidn2-2.0.5-alt1 1526923871 installed <13>Dec 8 01:48:47 rpmi: udev-rules-1:239-alt3 sisyphus.215710.300 1540765573 installed <13>Dec 8 01:48:47 rpmi: libkmod-25-alt1 1522318405 installed <13>Dec 8 01:48:47 rpmi: kmod-25-alt1 1522318405 installed <13>Dec 8 01:48:47 rpmi: libgfortran4-7.3.1-alt7 sisyphus.214000.100 1542666892 installed <13>Dec 8 01:48:47 rpmi: rpm-macros-info-install-6.5-alt1.1 1520363044 installed <13>Dec 8 01:48:47 rpmi: libnuma-2.0.11-alt1 1450022595 installed <13>Dec 8 01:48:47 rpmi: libmnl-1.0.4-alt1 1480571789 installed <13>Dec 8 01:48:47 rpmi: gcc-fortran-common-1.4.22-alt1 1519183788 installed <13>Dec 8 01:48:47 rpmi: liblz4-1:1.8.3-alt1 sisyphus.213737.100 1538009646 installed <13>Dec 8 01:48:47 rpmi: libiptables-1.4.21-alt3 1435789456 installed <13>Dec 8 01:48:47 rpmi: msulogin-1.0-alt1 1366288481 installed <13>Dec 8 01:48:47 rpmi: mount-2.32-alt2 1528296098 installed <13>Dec 8 01:48:47 rpmi: libdevmapper-1.02.152-alt2 sisyphus.216915.100 1543418881 installed <13>Dec 8 01:48:47 rpmi: sysvinit-2.88-alt5 1424350685 installed <13>Dec 8 01:48:47 rpmi: libnetlink-4.18.0-alt1 1534194780 installed <13>Dec 8 01:48:47 rpmi: libnuma-devel-2.0.11-alt1 1450022595 installed <13>Dec 8 01:48:47 rpmi: libgfortran5-8.2.1-alt1 sisyphus.214000.20 1542662172 installed <13>Dec 8 01:48:47 rpmi: libquadmath8-devel-8.2.1-alt1 sisyphus.214000.20 1542662172 installed <13>Dec 8 01:48:47 rpmi: libgfortran8-devel-8.2.1-alt1 sisyphus.214000.20 1542662172 installed <13>Dec 8 01:48:48 rpmi: gcc8-fortran-8.2.1-alt1 sisyphus.214000.20 1542662172 installed <13>Dec 8 01:48:48 rpmi: gcc-fortran-8-alt1 sisyphus.214000.40 1542664792 installed <13>Dec 8 01:48:48 rpmi: libgfortran3-6.3.1-alt3.1 sisyphus.213581.600 1538069106 installed <13>Dec 8 01:48:48 rpmi: libquadmath7-devel-7.3.1-alt7 sisyphus.214000.100 1542666892 installed <13>Dec 8 01:48:48 rpmi: libgfortran7-devel-7.3.1-alt7 sisyphus.214000.100 1542666892 installed <13>Dec 8 01:48:48 rpmi: tex-common-0.2-alt4 1244804096 installed <13>Dec 8 01:48:48 rpmi: texi2dvi-6.5-alt1.1 1520363044 installed <13>Dec 8 01:48:48 rpmi: perl-Unicode-Normalize-1:5.26.2-alt2 1534850660 installed <13>Dec 8 01:48:48 rpmi: perl-Unicode-EastAsianWidth-1.33-alt1 1383358357 installed <13>Dec 8 01:48:48 rpmi: perl-Text-Unidecode-1.30-alt1 1480505027 installed <13>Dec 8 01:48:48 rpmi: perl-Pod-Escapes-1.07-alt1 1418767892 installed <13>Dec 8 01:48:48 rpmi: perl-Filter-1.59-alt1 1533737240 installed <13>Dec 8 01:48:48 rpmi: perl-Encode-2.98-alt1 1525447808 installed <13>Dec 8 01:48:48 rpmi: perl-libintl-1.31-alt1 sisyphus.216662.100 1542744837 installed <13>Dec 8 01:48:48 rpmi: perl-Pod-Simple-3.35-alt1 1482098090 installed <13>Dec 8 01:48:48 rpmi: makeinfo-6.5-alt1.1 1520363031 installed <13>Dec 8 01:48:48 rpmi: zlib-devel-1.2.11-alt1 sisyphus.217171.100 1543710738 installed <13>Dec 8 01:48:48 rpmi: libibumad-20.1-alt1 sisyphus.215851.40 1541165553 installed <13>Dec 8 01:48:48 rpmi: libpci-3.6.2-alt1.S1 sisyphus.213446.100 1537513663 installed <13>Dec 8 01:48:48 rpmi: pciids-20181203-alt1 sisyphus.217255.100 1543878432 installed <13>Dec 8 01:48:48 rpmi: pciutils-3.6.2-alt1.S1 sisyphus.213446.100 1537513663 installed <13>Dec 8 01:48:48 rpmi: libsz2-2.1-alt4 1300649105 installed <13>Dec 8 01:48:48 rpmi: libnl3-3.4.0-alt2 1507570084 installed <13>Dec 8 01:48:48 rpmi: libibverbs-20.1-alt1 sisyphus.215851.40 1541165553 installed <13>Dec 8 01:48:48 rpmi: librdmacm-20.1-alt1 sisyphus.215851.40 1541165553 installed <13>Dec 8 01:48:48 rpmi: tcsh-6.20.00-alt2 1503603377 installed <13>Dec 8 01:48:48 rpmi: rpm-macros-mpi-selector-1.0.3-alt3 1504498675 installed <13>Dec 8 01:48:48 rpmi: mpi-selector-1.0.3-alt3 1504498675 installed <13>Dec 8 01:48:49 rpmi: openmpi-2.0.1-alt7 sisyphus.216567.400 1543514589 installed <13>Dec 8 01:48:49 rpmi: libpnetcdf-1.8.1-alt1 1505818746 installed <13>Dec 8 01:48:49 rpmi: libexpat-2.2.4-alt1 1503305341 installed <13>Dec 8 01:48:49 rpmi: publicsuffix-list-dafsa-20181106-alt1 sisyphus.216228.100 1541611754 installed <13>Dec 8 01:48:49 rpmi: libpsl-0.20.2-alt2 sisyphus.216228.200 1541611883 installed <13>Dec 8 01:48:49 rpmi: libnghttp2-1.34.0-alt1 sisyphus.214524.100 1539249616 installed <13>Dec 8 01:48:49 rpmi: libverto-0.3.0-alt1_5 1525957716 installed <13>Dec 8 01:48:49 rpmi: libkeyutils-1.6-alt2 sisyphus.217337.100 1544003165 installed <13>Dec 8 01:48:49 rpmi: libcom_err-1.44.3-alt1 1532134713 installed <13>Dec 8 01:48:49 rpmi: libbrotlicommon-1.0.7-alt1 sisyphus.215491.100 1540428591 installed <13>Dec 8 01:48:49 rpmi: libbrotlidec-1.0.7-alt1 sisyphus.215491.100 1540428591 installed <13>Dec 8 01:48:49 rpmi: libatm-2.5.1-alt4 1349943442 installed <13>Dec 8 01:48:49 rpmi: chrooted-0.3.9-alt1 1524554183 installed <13>Dec 8 01:48:49 rpmi: chrooted-resolv-0.3.1-alt2 1176155257 installed <13>Dec 8 01:48:49 rpmi: gcc-c++-common-1.4.22-alt1 1519183788 installed <13>Dec 8 01:48:49 rpmi: libstdc++8-devel-8.2.1-alt1 sisyphus.214000.20 1542662172 installed <13>Dec 8 01:48:50 rpmi: gcc8-c++-8.2.1-alt1 sisyphus.214000.20 1542662172 installed <13>Dec 8 01:48:50 rpmi: gcc-c++-8-alt1 sisyphus.214000.40 1542664792 installed <13>Dec 8 01:48:50 rpmi: libseccomp-2.3.3-alt1.S1.1 1525141482 installed <13>Dec 8 01:48:50 rpmi: libpcre2-10.32-alt1 sisyphus.212994.100 1536866755 installed <13>Dec 8 01:48:50 rpmi: libjson-c-0.12.1-alt2 1517446108 installed <13>Dec 8 01:48:50 rpmi: libargon2-20171227-alt2 sisyphus.216770.100 1542965252 installed <13>Dec 8 01:48:50 rpmi: libgpg-error-1.31-alt1.S1 1529015796 installed <13>Dec 8 01:48:50 rpmi: libgcrypt20-1.8.3-alt3 sisyphus.214019.140 1538990261 installed <13>Dec 8 01:48:51 rpmi: libsystemd-1:239-alt3 sisyphus.215710.300 1540765573 installed <13>Dec 8 01:48:51 rpmi: libcryptsetup-2.0.6-alt1 sisyphus.217248.100 1543864710 installed <13>Dec 8 01:48:51 rpmi: hwclock-1:2.32-alt2 1528296098 installed <13>Dec 8 01:48:51 rpmi: startup-0.9.9.6-alt1 sisyphus.215964.200 1542884274 installed <13>Dec 8 01:48:51 rpmi: systemd-utils-1:239-alt3 sisyphus.215710.300 1540765573 installed <13>Dec 8 01:48:51 rpmi: udev-hwdb-1:239-alt3 sisyphus.215710.300 1540765573 installed <13>Dec 8 01:48:51 rpmi: hashalot-0.3-alt1.qa1 1366323553 installed <13>Dec 8 01:48:51 rpmi: losetup-2.32-alt2 1528296098 installed <13>Dec 8 01:48:51 rpmi: lsblk-2.32-alt2 1528296098 installed <13>Dec 8 01:48:51 rpmi: dmsetup-1.02.152-alt2 sisyphus.216915.100 1543418881 installed <86>Dec 8 01:48:51 groupadd[28152]: group added to /etc/group: name=tape, GID=499 <86>Dec 8 01:48:51 groupadd[28152]: group added to /etc/gshadow: name=tape <86>Dec 8 01:48:51 groupadd[28152]: new group: name=tape, GID=499 <86>Dec 8 01:48:51 groupadd[28163]: group added to /etc/group: name=dialout, GID=498 <86>Dec 8 01:48:51 groupadd[28163]: group added to /etc/gshadow: name=dialout <86>Dec 8 01:48:51 groupadd[28163]: new group: name=dialout, GID=498 <86>Dec 8 01:48:51 groupadd[28173]: group added to /etc/group: name=input, GID=497 <86>Dec 8 01:48:51 groupadd[28173]: group added to /etc/gshadow: name=input <86>Dec 8 01:48:51 groupadd[28173]: new group: name=input, GID=497 <86>Dec 8 01:48:51 groupadd[28184]: group added to /etc/group: name=video, GID=496 <86>Dec 8 01:48:51 groupadd[28184]: group added to /etc/gshadow: name=video <86>Dec 8 01:48:51 groupadd[28184]: new group: name=video, GID=496 <86>Dec 8 01:48:51 groupadd[28195]: group added to /etc/group: name=render, GID=495 <86>Dec 8 01:48:51 groupadd[28195]: group added to /etc/gshadow: name=render <86>Dec 8 01:48:51 groupadd[28195]: new group: name=render, GID=495 <13>Dec 8 01:48:51 rpmi: udev-1:239-alt3 sisyphus.215710.300 1540765573 installed <13>Dec 8 01:48:51 rpmi: libtasn1-4.13-alt2 1521133848 installed <13>Dec 8 01:48:51 rpmi: libp11-kit-0.23.9-alt5 1525798241 installed <13>Dec 8 01:48:51 rpmi: bc-1:1.06-alt4 1461014962 installed <13>Dec 8 01:48:51 rpmi: rpm-macros-alternatives-0.4.5-alt1.1 1404382149 installed <13>Dec 8 01:48:51 rpmi: alternatives-0.4.5-alt1.1 1404382149 installed <13>Dec 8 01:48:51 rpmi: libhdf5-8-mpi-1.8.13-alt4 1533048416 installed <13>Dec 8 01:48:51 rpmi: ca-certificates-2018.11.12-alt1 sisyphus.216395.300 1542114035 installed <13>Dec 8 01:48:51 rpmi: ca-trust-0.1.1-alt2 1515595785 installed <13>Dec 8 01:48:51 rpmi: p11-kit-trust-0.23.9-alt5 1525798241 installed <13>Dec 8 01:48:51 rpmi: libcrypto1.1-1.1.0j-alt1 sisyphus.216647.100 1542743840 installed <13>Dec 8 01:48:51 rpmi: libssl1.1-1.1.0j-alt1 sisyphus.216647.100 1542743840 installed <86>Dec 8 01:48:51 groupadd[28740]: group added to /etc/group: name=_keytab, GID=494 <86>Dec 8 01:48:51 groupadd[28740]: group added to /etc/gshadow: name=_keytab <86>Dec 8 01:48:51 groupadd[28740]: new group: name=_keytab, GID=494 <13>Dec 8 01:48:51 rpmi: libkrb5-1.16.2-alt2 sisyphus.216877.200 1543483170 installed <86>Dec 8 01:48:51 groupadd[28857]: group added to /etc/group: name=sasl, GID=493 <86>Dec 8 01:48:51 groupadd[28857]: group added to /etc/gshadow: name=sasl <86>Dec 8 01:48:51 groupadd[28857]: new group: name=sasl, GID=493 <13>Dec 8 01:48:51 rpmi: libsasl2-3-2.1.27-alt0.2 1535660692 installed <13>Dec 8 01:48:51 rpmi: libldap-2.4.46-alt1 1535562096 installed <13>Dec 8 01:48:51 rpmi: libcurl-7.62.0-alt3 sisyphus.216461.100 1542191615 installed <13>Dec 8 01:48:52 rpmi: libnetcdf11-mpi-4.4.1.1-alt2 1505818983 installed <86>Dec 8 01:48:52 groupadd[29013]: group added to /etc/group: name=iputils, GID=492 <86>Dec 8 01:48:52 groupadd[29013]: group added to /etc/gshadow: name=iputils <86>Dec 8 01:48:52 groupadd[29013]: new group: name=iputils, GID=492 <86>Dec 8 01:48:52 useradd[29021]: new user: name=iputils, UID=499, GID=492, home=/dev/null, shell=/dev/null <86>Dec 8 01:48:52 groupadd[29035]: group added to /etc/group: name=netadmin, GID=491 <86>Dec 8 01:48:52 groupadd[29035]: group added to /etc/gshadow: name=netadmin <86>Dec 8 01:48:52 groupadd[29035]: new group: name=netadmin, GID=491 <13>Dec 8 01:48:52 rpmi: iputils-20180629-alt1 1535650705 installed sysctl: cannot stat /proc/sys/net/ipv4/ping_group_range: No such file or directory <13>Dec 8 01:48:52 rpmi: iproute2-4.18.0-alt1 1534194780 installed <13>Dec 8 01:48:52 rpmi: rdma-core-20.1-alt1 sisyphus.215851.40 1541165553 installed <13>Dec 8 01:48:52 rpmi: ibacm-20.1-alt1 sisyphus.215851.40 1541165553 installed <13>Dec 8 01:48:52 rpmi: rdma-core-devel-20.1-alt1 sisyphus.215851.40 1541165553 installed <13>Dec 8 01:48:52 rpmi: openmpi-devel-2.0.1-alt7 sisyphus.216567.400 1543514589 installed <13>Dec 8 01:48:52 rpmi: libhdf5-mpi-devel-1.8.13-alt4 1533048416 installed <13>Dec 8 01:48:52 rpmi: libnetcdf-mpi-devel-4.4.1.1-alt2 1505818983 installed <13>Dec 8 01:48:52 rpmi: libcurl-devel-7.62.0-alt3 sisyphus.216461.100 1542191615 installed <13>Dec 8 01:48:52 rpmi: libexpat-devel-2.2.4-alt1 1503305341 installed <13>Dec 8 01:48:52 rpmi: texinfo-6.5-alt1.1 1520363031 installed <13>Dec 8 01:48:52 rpmi: flex-2.6.0-alt1 1449073214 installed Building target platforms: x86_64 Building for target x86_64 Wrote: /usr/src/in/nosrpm/libnetcdf_c++-4-mpi-4.2-alt4.nosrc.rpm Installing libnetcdf_c++-4-mpi-4.2-alt4.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.49599 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf libnetcdf_c++-4-mpi-4.2 + echo 'Source #0 (libnetcdf_c++-4-mpi-4.2.tar):' Source #0 (libnetcdf_c++-4-mpi-4.2.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/libnetcdf_c++-4-mpi-4.2.tar + cd libnetcdf_c++-4-mpi-4.2 + /bin/chmod -c -Rf u+rwX,go-w . + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.49599 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd libnetcdf_c++-4-mpi-4.2 + mpi-selector --set openmpi + source /usr/lib64/openmpi/bin/mpivars.sh ++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ grep -q /usr/lib64/openmpi/bin ++ PATH=/usr/lib64/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ export PATH ++ echo ++ grep -q /usr/lib64/openmpi/lib ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ echo ++ grep -q /usr/lib64/openmpi/man ++ MANPATH=/usr/lib64/openmpi/man: ++ export MANPATH + export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + autoreconf -fisv autoreconf-default: Entering directory `.' autoreconf-default: configure.ac: not using Gettext autoreconf-default: running: aclocal --force -I m4 configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5428: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:816: _LT_LANG is expanded from... m4/libtool.m4:799: LT_LANG is expanded from... m4/libtool.m4:827: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5428: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:816: _LT_LANG is expanded from... m4/libtool.m4:799: LT_LANG is expanded from... m4/libtool.m4:827: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level autoreconf-default: configure.ac: tracing configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5428: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:816: _LT_LANG is expanded from... m4/libtool.m4:799: LT_LANG is expanded from... m4/libtool.m4:827: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level autoreconf-default: running: libtoolize --force --install libtoolize-default: putting auxiliary files in `.'. libtoolize-default: linking file `./config.guess' libtoolize-default: linking file `./config.sub' libtoolize-default: linking file `./install-sh' libtoolize-default: linking file `./ltmain.sh' libtoolize-default: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize-default: linking file `m4/libtool.m4' libtoolize-default: linking file `m4/ltoptions.m4' libtoolize-default: linking file `m4/ltsugar.m4' libtoolize-default: linking file `m4/ltversion.m4' libtoolize-default: linking file `m4/lt~obsolete.m4' autoreconf-default: configure.ac: not using Intltool autoreconf-default: configure.ac: not using gtk-doc autoreconf-default: running: /usr/bin/autoconf-2.60 --force autoreconf-default: running: /usr/bin/autoheader-2.60 --force autoreconf-default: running: automake --add-missing --force-missing configure.ac:33: warning: support for distribution archives compressed with legacy program 'compress' is deprecated. configure.ac:33: It will be removed in Automake 2.0 configure.ac:95: installing './compile' parallel-tests: installing './test-driver' autoreconf-default: Leaving directory `.' + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export CFLAGS + CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export CXXFLAGS + FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export FFLAGS + '[' -n '' ']' ++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' ++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g' + ASFLAGS= + export ASFLAGS + export lt_cv_deplibs_check_method=pass_all + lt_cv_deplibs_check_method=pass_all + readlink -e -- ./configure + sort -u + xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess + xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n' + xargs -ri dirname -- '{}' + ./configure --build=x86_64-alt-linux --host=x86_64-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --without-included-gettext --enable-shared --enable-static=no --bindir=/usr/lib64/openmpi/bin --libdir=/usr/lib64/openmpi/lib --includedir=/usr/lib64/openmpi/include configure: WARNING: unrecognized options: --without-included-gettext configure: netCDF-cxx 4.2 checking build system type... x86_64-alt-linux-gnu checking host system type... x86_64-alt-linux-gnu checking target system type... x86_64-alt-linux-gnu checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes configure: checking user options checking whether extra valgrind tests should be run... no checking whether netCDF extra tests should be run (developers only)... no checking whether large file (> 2GB) tests should be run... no checking where to put large temp files if large file tests are run... . configure: finding C++ compiler (will not be used if C++ API is not desired) checking for x86_64-alt-linux-g++... x86_64-alt-linux-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether x86_64-alt-linux-g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of x86_64-alt-linux-g++... none configure: setting up libtool checking how to print strings... printf checking for x86_64-alt-linux-gcc... x86_64-alt-linux-gcc checking whether we are using the GNU C compiler... yes checking whether x86_64-alt-linux-gcc accepts -g... yes checking for x86_64-alt-linux-gcc option to accept ISO C89... none needed checking whether x86_64-alt-linux-gcc understands -c and -o together... yes checking dependency style of x86_64-alt-linux-gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by x86_64-alt-linux-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-alt-linux-gnu file names to x86_64-alt-linux-gnu format... func_convert_file_noop checking how to convert x86_64-alt-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-alt-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... (cached) pass_all checking for x86_64-alt-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-alt-linux-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for x86_64-alt-linux-strip... no checking for strip... strip checking for x86_64-alt-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from x86_64-alt-linux-gcc object... ok checking for sysroot... no checking for x86_64-alt-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... x86_64-alt-linux-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-alt-linux-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-alt-linux-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-alt-linux-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-alt-linux-gcc static flag -static works... no checking if x86_64-alt-linux-gcc supports -c -o file.o... yes checking if x86_64-alt-linux-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-alt-linux-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... x86_64-alt-linux-g++ -E checking for ld used by x86_64-alt-linux-g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-alt-linux-g++ option to produce PIC... -fPIC -DPIC checking if x86_64-alt-linux-g++ PIC flag -fPIC -DPIC works... yes checking if x86_64-alt-linux-g++ static flag -static works... no checking if x86_64-alt-linux-g++ supports -c -o file.o... yes checking if x86_64-alt-linux-g++ supports -c -o file.o... (cached) yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: finding other utilities checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking netcdf.h usability... yes checking netcdf.h presence... no configure: WARNING: netcdf.h: accepted by the compiler, rejected by the preprocessor! configure: WARNING: netcdf.h: proceeding with the compiler's result checking for netcdf.h... yes checking for library containing nc_open... -lnetcdf checking for nc_def_opaque... yes checking for nccreate... yes checking for nc_set_log_level... no checking for nc_use_parallel_enabled... yes configure: generating header files and makefiles checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating man4/Makefile config.status: creating cxx/Makefile config.status: creating examples/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --without-included-gettext + make -j8 make all-recursive Making all in cxx make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' /bin/sh ../libtool --tag=CXX --mode=compile x86_64-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o libnetcdf_c___la-ncvalues.lo `test -f 'ncvalues.cpp' || echo './'`ncvalues.cpp libtool: compile: x86_64-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c ncvalues.cpp -fPIC -DPIC -o .libs/libnetcdf_c___la-ncvalues.o make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' /bin/sh ../libtool --tag=CXX --mode=compile x86_64-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o libnetcdf_c___la-netcdf.lo `test -f 'netcdf.cpp' || echo './'`netcdf.cpp libtool: compile: x86_64-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c netcdf.cpp -fPIC -DPIC -o .libs/libnetcdf_c___la-netcdf.o netcdf.cpp: In member function 'int NcVar::num_atts() const': netcdf.cpp:650:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (the_file->is_valid()) ^ make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' /bin/sh ../libtool --tag=CXX --mode=link x86_64-alt-linux-g++ -pipe -frecord-gcc-switches -Wall -g -O2 -I/usr/lib64/openmpi/include -I/usr/lib64/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -version-number 4:2:0 -o libnetcdf_c++.la -rpath /usr/lib64/openmpi/lib libnetcdf_c___la-netcdf.lo libnetcdf_c___la-ncvalues.lo -lnetcdf libtool: link: x86_64-alt-linux-g++ -fPIC -DPIC -shared -nostdlib /usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-alt-linux/8/crtbeginS.o .libs/libnetcdf_c___la-netcdf.o .libs/libnetcdf_c___la-ncvalues.o -lnetcdf -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib64/gcc/x86_64-alt-linux/8/crtendS.o /usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64/crtn.o -O2 -Wl,-soname -Wl,libnetcdf_c++.so.4 -o .libs/libnetcdf_c++.so.4.2.0 libtool: link: (cd ".libs" && rm -f "libnetcdf_c++.so.4" && ln -s "libnetcdf_c++.so.4.2.0" "libnetcdf_c++.so.4") libtool: link: (cd ".libs" && rm -f "libnetcdf_c++.so" && ln -s "libnetcdf_c++.so.4.2.0" "libnetcdf_c++.so") libtool: link: ( cd ".libs" && rm -f "libnetcdf_c++.la" && ln -s "../libnetcdf_c++.la" "libnetcdf_c++.la" ) make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' Making all in examples make[2]: Nothing to be done for 'all'. Making all in man4 make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' Updating ./version-cxx.texi make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.68615 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot + : + /bin/rm -rf -- /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot + cd libnetcdf_c++-4-mpi-4.2 + source /usr/lib64/openmpi/bin/mpivars.sh ++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ grep -q /usr/lib64/openmpi/bin ++ PATH=/usr/lib64/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ export PATH ++ echo ++ grep -q /usr/lib64/openmpi/lib ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ grep -q /usr/lib64/openmpi/man ++ echo ++ MANPATH=/usr/lib64/openmpi/man: ++ export MANPATH + export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + make 'INSTALL=/bin/install -p' install DESTDIR=/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot make: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' Making install in cxx make[1]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' /bin/mkdir -p '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib' /bin/sh ../libtool --mode=install /bin/install -p libnetcdf_c++.la '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib' libtool: install: /bin/install -p .libs/libnetcdf_c++.so.4.2.0 /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib/libnetcdf_c++.so.4.2.0 libtool: install: (cd /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib && { ln -s -f libnetcdf_c++.so.4.2.0 libnetcdf_c++.so.4 || { rm -f libnetcdf_c++.so.4 && ln -s libnetcdf_c++.so.4.2.0 libnetcdf_c++.so.4; }; }) libtool: install: (cd /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib && { ln -s -f libnetcdf_c++.so.4.2.0 libnetcdf_c++.so || { rm -f libnetcdf_c++.so && ln -s libnetcdf_c++.so.4.2.0 libnetcdf_c++.so; }; }) libtool: install: /bin/install -p .libs/libnetcdf_c++.lai /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib/libnetcdf_c++.la libtool: install: warning: remember to run `libtool --finish /usr/lib64/openmpi/lib' /bin/mkdir -p '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include' /bin/install -p -m 644 netcdfcpp.h ncvalues.h netcdf.hh '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include' make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' make[1]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' Making install in examples make[1]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' make[1]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' Making install in man4 make[1]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (/bin/sh /usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/missing makeinfo --version) >/dev/null 2>&1; then \ for f in netcdf-cxx.info netcdf-cxx.info-[0-9] netcdf-cxx.info-[0-9][0-9] netcdf-cxx.i[0-9] netcdf-cxx.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if /bin/sh /usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/missing makeinfo -I . \ -o netcdf-cxx.info netcdf-cxx.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./netcdf-cxx.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc netcdf-cxx.texi:8: warning: @setcontentsaftertitlepage is obsolete; move your @contents command if you want the contents after the title page ./defines.texi:86: warning: multiple @setchapternewpage make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' make[2]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/info' /bin/install -p -m 644 ./netcdf-cxx.info '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/info' make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' make[1]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' make[1]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[2]: Nothing to be done for 'install-exec-am'. make install-data-hook make[3]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' +-------------------------------------------------------------+ | Congratulations! You have successfully installed the netCDF | | C++ Libaray | | | | CAUTION: | | | | If you have not already run "make check", then we strongly | | recommend you do so. It does not take very long. | | | | Before using netCDF to store important data, test your | | build with "make check". | | | | NetCDF is tested nightly on many platforms at Unidata | | but your platform is probably different in some ways. | | | | If any tests fail, please see the netCDF web site: | | http://www.unidata.ucar.edu/software/netcdf/ | | | | NetCDF is developed and maintained at the Unidata Program | | Center. Unidata provides a broad array of data and software | | tools for use in geoscience education and research. | | http://www.unidata.ucar.edu | +-------------------------------------------------------------+ make[3]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[1]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' + install -d /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf + mv /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/ncvalues.h /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf.hh /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdfcpp.h /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf/ + rm -f /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib/libnetcdf_c++.la + install -d /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/etc/alternatives/packages.d + mkdir -p /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64 + pushd /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib ~/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/lib ~/RPM/BUILD/libnetcdf_c++-4-mpi-4.2 + for i in 'libnetcdf_c++.so.*' + ln -s ../../usr/lib64/openmpi/lib/libnetcdf_c++.so.4 /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/ + echo '/usr/lib64/libnetcdf_c++.so.4 /usr/lib64/openmpi/lib/libnetcdf_c++.so.4 30' + for i in 'libnetcdf_c++.so.*' + ln -s ../../usr/lib64/openmpi/lib/libnetcdf_c++.so.4.2.0 /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/ + echo '/usr/lib64/libnetcdf_c++.so.4.2.0 /usr/lib64/openmpi/lib/libnetcdf_c++.so.4.2.0 30' ++ ls libnetcdf_c++.so + for i in '$(ls *.so)' + echo '/usr/lib64/libnetcdf_c++.so /usr/lib64/openmpi/lib/libnetcdf_c++.so 30' + popd ~/RPM/BUILD/libnetcdf_c++-4-mpi-4.2 + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (auto) mode of './usr/lib64/openmpi/lib/libnetcdf_c++.so.4.2.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) Verifying and fixing files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (binconfig,pkgconfig,libtool,desktop) Checking contents of files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/ (default) Compressing files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (auto) Verifying info files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/info (normal) Adjusting library links in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot ./usr/lib64: ./usr/lib64/openmpi/lib: libnetcdf_c++.so.4 -> libnetcdf_c++.so.4.2.0 Verifying ELF objects in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) Hardlinking identical .pyc and .pyo files Processing files: libnetcdf_c++-4-mpi-4.2-alt4 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.94393 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd libnetcdf_c++-4-mpi-4.2 + DOCDIR=/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + export DOCDIR + rm -rf /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + /bin/mkdir -p /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + cp -prL COPYRIGHT /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + chmod -R go-w /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + chmod -R a+rX /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.4i3B5c find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) warning: hash collision: _ZN13NcValues_longC1ERKS_ _ZN5NcVar3putEPKllllll warning: hash collision: _ZN13NcValues_longC1ElPKl _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.zoG9ni find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) ++ /bin/sed -e '/^debug.*(libnetcdf\.so.*/s/^/libnetcdf11-mpi-debuginfo\t/' Provides: libnetcdf_c++-mpi = 4.2-alt4, libnetcdf_c++-4-mpi = 4.2-alt4, /usr/lib64/libnetcdf_c++.so.4 = 30, /usr/lib64/libnetcdf_c++.so.4.2.0 = 30, libnetcdf_c++.so.4()(64bit) = set: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 Requires: libhdf5-8-mpi, libnetcdf11-mpi, /etc/alternatives/packages.d, libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.4)(64bit), libgcc_s.so.1(GCC_3.0)(64bit), libnetcdf.so.11()(64bit) >= set:oitpZH0nFmdtO6DUe5cR2i5WHqrmak4Z29VKNABIkQOKpVZ2GUvgXAeJRbmn4GGhQZ6dr3o2FldfilfTZk3kiqAQIID0L6bECbWHsxaIUaOMkSb11wtwDYWwrZFARMrxUX4cC5sBEZhQ5qkCuct8N00ZcHcjYHDAeJpg7GSTiC2, libstdc++.so.6(CXXABI_1.3)(64bit), libstdc++.so.6(CXXABI_1.3.8)(64bit), libstdc++.so.6(CXXABI_1.3.9)(64bit), libstdc++.so.6(GLIBCXX_3.4)(64bit), libstdc++.so.6(GLIBCXX_3.4.11)(64bit), libstdc++.so.6(GLIBCXX_3.4.21)(64bit), libstdc++.so.6(GLIBCXX_3.4.9)(64bit), rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Requires(post): alternatives Requires(preun): alternatives Conflicts: libnetcdf_c++ < 4.0.1-alt6, libnetcdf_c++-4-mpi < 4.2-alt4 Obsoletes: libnetcdf_c++-4-mpi < 4.2-alt4 Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.BXN8Ft Creating libnetcdf_c++-4-mpi-debuginfo package Processing files: libnetcdf_c++-mpi-devel-4.2-alt4 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.8NFQtI find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.361iQ0 find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) In file included from /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf/netcdfcpp.h:13, from /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf/netcdf.hh:1: /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf/ncvalues.h:13:10: fatal error: iostream: No such file or directory #include ^~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib64/openmpi/include/netcdf/netcdf.hh: cpp failed, trying c++ mode ++ /bin/sed -e '/^debug.*(libnetcdf\.so.*/s/^/libnetcdf11-mpi-debuginfo\t/' Provides: /usr/lib64/libnetcdf_c++.so = 30 Requires: libnetcdf_c++-4-mpi = 4.2-alt4, libnetcdf-mpi-devel, /etc/alternatives/packages.d, /usr/lib64/openmpi/lib/libnetcdf_c++.so.4.2.0 Requires(post): alternatives Requires(preun): alternatives Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.7vZ6Bm Processing files: libnetcdf_c++-4-mpi-doc-4.2-alt4 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.11336 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd libnetcdf_c++-4-mpi-4.2 + DOCDIR=/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + export DOCDIR + rm -rf /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + /bin/mkdir -p /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + cp -prL man4/netcdf-cxx.html man4/netcdf-cxx.pdf examples /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + chmod -R go-w /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + chmod -R a+rX /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.eLVaMM find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.fWh4qg find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) Conflicts: libnetcdf_c++-4-seq-doc Processing files: libnetcdf_c++-4-mpi-debuginfo-4.2-alt4 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.ElmrvN find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.mDJzYn find-requires: running scripts (debuginfo) ++ /bin/sed -e '/^debug.*(libnetcdf\.so.*/s/^/libnetcdf11-mpi-debuginfo\t/' --- find-requires-deps 2018-12-08 01:49:42.779261253 +0000 +++ filter-requires-deps 2018-12-08 01:49:42.782261172 +0000 @@ -2,3 +2,3 @@ debug64(libgcc_s.so.1) -debug64(libnetcdf.so.11) +libnetcdf11-mpi-debuginfo debug64(libnetcdf.so.11) debug64(libstdc++.so.6) Provides: debug64(libnetcdf_c++.so.4) Requires: libnetcdf_c++-4-mpi = 4.2-alt4, debug64(libc.so.6), debug64(libgcc_s.so.1), libnetcdf11-mpi-debuginfo, debug64(libnetcdf.so.11), debug64(libstdc++.so.6) Removing 1 extra deps from libnetcdf_c++-mpi-devel due to dependency on libnetcdf_c++-4-mpi Removing 2 extra deps from libnetcdf_c++-mpi-devel due to repentancy on libnetcdf_c++-4-mpi Wrote: /usr/src/RPM/RPMS/x86_64/libnetcdf_c++-4-mpi-4.2-alt4.x86_64.rpm Wrote: /usr/src/RPM/RPMS/x86_64/libnetcdf_c++-mpi-devel-4.2-alt4.x86_64.rpm Wrote: /usr/src/RPM/RPMS/noarch/libnetcdf_c++-4-mpi-doc-4.2-alt4.noarch.rpm Wrote: /usr/src/RPM/RPMS/x86_64/libnetcdf_c++-4-mpi-debuginfo-4.2-alt4.x86_64.rpm 25.88user 7.47system 0:42.35elapsed 78%CPU (0avgtext+0avgdata 87972maxresident)k 0inputs+0outputs (0major+1244211minor)pagefaults 0swaps 46.57user 15.47system 1:27.68elapsed 70%CPU (0avgtext+0avgdata 122624maxresident)k 28080inputs+0outputs (0major+1866627minor)pagefaults 0swaps --- libnetcdf_c++-4-mpi-4.2-alt4.x86_64.rpm.repo 2017-08-29 12:17:15.000000000 +0000 +++ libnetcdf_c++-4-mpi-4.2-alt4.x86_64.rpm.hasher 2018-12-08 01:49:45.070199925 +0000 @@ -11,3 +11,2 @@ Requires: /etc/alternatives/packages.d -Requires: libc.so.6(GLIBC_2.14)(64bit) Requires: libc.so.6(GLIBC_2.2.5)(64bit)