<86>Apr 13 07:46:03 userdel[1581059]: delete user 'rooter' <86>Apr 13 07:46:03 userdel[1581059]: removed group 'rooter' owned by 'rooter' <86>Apr 13 07:46:03 userdel[1581059]: removed shadow group 'rooter' owned by 'rooter' <86>Apr 13 07:46:03 groupadd[1581181]: group added to /etc/group: name=rooter, GID=1256 <86>Apr 13 07:46:03 groupadd[1581181]: group added to /etc/gshadow: name=rooter <86>Apr 13 07:46:03 groupadd[1581181]: new group: name=rooter, GID=1256 <86>Apr 13 07:46:03 useradd[1581242]: new user: name=rooter, UID=1256, GID=1256, home=/root, shell=/bin/bash, from=none <86>Apr 13 07:46:03 userdel[1581307]: delete user 'builder' <86>Apr 13 07:46:03 userdel[1581307]: removed group 'builder' owned by 'builder' <86>Apr 13 07:46:03 userdel[1581307]: removed shadow group 'builder' owned by 'builder' <86>Apr 13 07:46:03 groupadd[1581405]: group added to /etc/group: name=builder, GID=1257 <86>Apr 13 07:46:03 groupadd[1581405]: group added to /etc/gshadow: name=builder <86>Apr 13 07:46:03 groupadd[1581405]: new group: name=builder, GID=1257 <86>Apr 13 07:46:03 useradd[1581465]: new user: name=builder, UID=1257, GID=1257, home=/usr/src, shell=/bin/bash, from=none warning: Macro %cmake not found warning: Macro %cmake_build not found warning: Macro %cmake_install not found <13>Apr 13 07:46:14 rpmi: libjpeg-2:3.0.2-alt2.1 sisyphus+340135.100.1.1 1707449053 installed <13>Apr 13 07:46:14 rpmi: libpng16-1.6.42-alt2 sisyphus+339555.100.1.1 1706781690 installed <13>Apr 13 07:46:14 rpmi: libwayland-client-1.22.0-alt1.1 sisyphus+318010.100.1.1 1680606300 installed <13>Apr 13 07:46:14 rpmi: libexpat-2.5.0-alt1 sisyphus+309227.100.1.1 1667075766 installed <13>Apr 13 07:46:14 rpmi: libogg-1.3.5-alt1 sisyphus+278100.3400.1.1 1626059695 installed <13>Apr 13 07:46:14 rpmi: libvorbis-1.3.7-alt1 sisyphus+275738.100.1.1 1624751609 installed <13>Apr 13 07:46:14 rpmi: libraw1394-11-2.1.2-alt1 sisyphus+278262.100.1.1 1626081867 installed <13>Apr 13 07:46:14 rpmi: libgudev-1:238-alt1 sisyphus+324364.100.1.1 1688646145 installed <13>Apr 13 07:46:14 rpmi: liblcms2-2.16-alt1 sisyphus+335676.100.1.1 1701682605 installed <13>Apr 13 07:46:14 rpmi: libwebp7-1.3.2-alt1 sisyphus+329541.100.1.1 1694676226 installed <13>Apr 13 07:46:14 rpmi: libopus-1.5.1-alt1 sisyphus+342127.200.2.2 1709717984 installed <13>Apr 13 07:46:14 rpmi: libboost_system1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:14 rpmi: libusb-1.0.26-alt3 sisyphus+340691.100.3.1 1708466436 installed <13>Apr 13 07:46:14 rpmi: libgomp1-13.2.1-alt3 sisyphus+339335.100.1.1 1706563095 installed <13>Apr 13 07:46:15 rpmi: libicu74-1:7.4.2-alt1 sisyphus+336372.200.1.1 1702422879 installed <13>Apr 13 07:46:15 rpmi: xorg-proto-devel-2024.1-alt1 sisyphus+343583.40.1.1 1711440649 installed <13>Apr 13 07:46:15 rpmi: libtheora-2:1.1.1-alt6 sisyphus+277967.100.1.1 1625928124 installed <13>Apr 13 07:46:15 rpmi: libwayland-egl-4:18.1.0-alt1.1 sisyphus+318010.100.1.1 1680606300 installed <13>Apr 13 07:46:15 rpmi: libhyphen-2.8.8-alt1 sisyphus+278186.100.1.1 1626075927 installed <13>Apr 13 07:46:15 rpmi: libsqlite3-3.44.2-alt1 sisyphus+335409.100.3.3 1701347861 installed <13>Apr 13 07:46:15 rpmi: perl-HTTP-Date-6.06-alt1 sisyphus+324527.100.1.1 1688834564 installed <13>Apr 13 07:46:15 rpmi: perl-XML-NamespaceSupport-1.12-alt1 1491296348 installed <13>Apr 13 07:46:15 rpmi: libSDL2-2.30.2-alt1 sisyphus+344208.100.1.1 1712058403 installed <13>Apr 13 07:46:15 rpmi: liborc-0.4.38-alt1 sisyphus+341604.100.1.1 1709115419 installed <13>Apr 13 07:46:15 rpmi: libwayland-server-1.22.0-alt1.1 sisyphus+318010.100.1.1 1680606300 installed <13>Apr 13 07:46:15 rpmi: libserd-0.32.2-alt1 sisyphus+341428.200.1.1 1708949159 installed <13>Apr 13 07:46:15 rpmi: libspeex-1.2.1-alt1 sisyphus+339763.100.1.1 1707113839 installed <13>Apr 13 07:46:15 rpmi: libfribidi-1.0.13-alt1 sisyphus+320646.100.1.1 1684307083 installed <13>Apr 13 07:46:15 rpmi: liblame-3.100-alt1 sisyphus+276241.100.1.2 1624925655 installed <13>Apr 13 07:46:15 rpmi: libgsm-1.0.17-alt1 sisyphus+275359.100.2.1 1624907612 installed <13>Apr 13 07:46:15 rpmi: libopenjpeg2.0-2.5.2-alt1 sisyphus+341637.100.1.1 1709150019 installed <13>Apr 13 07:46:15 rpmi: libidn2-2.3.7-alt1 sisyphus+339505.100.1.2 1706718975 installed <13>Apr 13 07:46:15 rpmi: libnettle8-3.9.1-alt1 sisyphus+322548.100.1.2 1686176897 installed <13>Apr 13 07:46:15 rpmi: libtasn1-4.19.0-alt3 sisyphus+327816.100.1.1 1692802618 installed <13>Apr 13 07:46:15 rpmi: libatk-2.52.0-alt1 sisyphus+342903.100.1.1 1710606495 installed <13>Apr 13 07:46:15 rpmi: libdc1394-22-2.2.5-alt1.1 sisyphus+311484.100.1.1 1670647148 installed <13>Apr 13 07:46:15 rpmi: libiec61883-1.2.0-alt1.qa1 sisyphus+275365.100.1.2 1624491850 installed <13>Apr 13 07:46:15 rpmi: libflac12-1.4.3-alt2 sisyphus+343354.100.1.1 1711119065 installed <13>Apr 13 07:46:15 rpmi: libwayland-cursor-1.22.0-alt1.1 sisyphus+318010.100.1.1 1680606300 installed <13>Apr 13 07:46:15 rpmi: libv4l-1.26.1-alt1 sisyphus+336403.100.1.1 1702467949 installed <13>Apr 13 07:46:15 rpmi: libdv-1.0.0-alt6 sisyphus+286805.100.2.1 1633968017 installed <13>Apr 13 07:46:15 rpmi: libxslt-1.1.37-alt1 sisyphus+307481.100.1.1 1664360525 installed <13>Apr 13 07:46:15 rpmi: libepoxy-1.5.10-alt1 sisyphus+296853.200.2.1 1647631868 installed <13>Apr 13 07:46:15 rpmi: perl-LWP-MediaTypes-6.04-alt1 sisyphus+225468.100.1.1 1553186684 installed <13>Apr 13 07:46:15 rpmi: perl-Compress-Raw-Zlib-2.206-alt1 sisyphus+335067.600.1.1 1700901614 installed <13>Apr 13 07:46:15 rpmi: perl-libnet-1:3.15-alt1 sisyphus+317310.100.1.1 1679580208 installed <13>Apr 13 07:46:15 rpmi: perl-XML-SAX-Base-1.09-alt1 1494364363 installed <13>Apr 13 07:46:15 rpmi: libsbc1-2.0-alt2 sisyphus+322708.100.1.1 1686327806 installed <13>Apr 13 07:46:15 rpmi: liblc3-1.1.0-alt1 sisyphus+343818.100.1.1 1711619851 installed <13>Apr 13 07:46:15 rpmi: libfreeaptx-0.1.1-alt1 sisyphus+282022.100.1.1 1628182684 installed <13>Apr 13 07:46:15 rpmi: libdvdread8-6.1.3-alt1 sisyphus+302642.100.1.1 1656163149 installed <13>Apr 13 07:46:15 rpmi: libimath29-3.1.6-alt4 sisyphus+340273.100.1.2 1707542785 installed <13>Apr 13 07:46:15 rpmi: libiex30-3.1.5-alt2.2 sisyphus+324124.100.1.1 1688379856 installed <13>Apr 13 07:46:15 rpmi: libzeromq-4.3.4-alt3 sisyphus+326735.200.2.1 1691482854 installed <13>Apr 13 07:46:15 rpmi: libmpg123-1:1.32.6-alt1 sisyphus+344452.200.2.1 1712305496 installed <13>Apr 13 07:46:15 rpmi: libsndfile-1.1.0-alt1 sisyphus+339776.7300.6.2 1707349197 installed <13>Apr 13 07:46:15 rpmi: libspirv-tools0-1:2023.6-alt0.2.g0b027ba sisyphus+342474.100.2.1 1710160165 installed <13>Apr 13 07:46:15 rpmi: libzix-0.4.2-alt1 sisyphus+341428.100.1.1 1708949132 installed <13>Apr 13 07:46:15 rpmi: libsord-0.16.16-alt1 sisyphus+341428.300.1.1 1708949186 installed <13>Apr 13 07:46:15 rpmi: libbs2b-3.1.0-alt1.4 sisyphus+284589.100.1.1 1630750816 installed <13>Apr 13 07:46:16 rpmi: libvpx8-1.13.1-alt2 sisyphus+337593.200.1.1 1704142932 installed <13>Apr 13 07:46:16 rpmi: libglvnd-7:1.7.0-alt1 sisyphus+330949.100.1.1 1696424894 installed <13>Apr 13 07:46:16 rpmi: libtwolame-0.4.0-alt1 sisyphus+277783.100.1.1 1625798479 installed <13>Apr 13 07:46:16 rpmi: libdav1d_7-1.4.1-alt1 sisyphus+344157.100.2.1 1711988264 installed <13>Apr 13 07:46:16 rpmi: libaom3-3.5.0-alt2 sisyphus+335780.100.1.1 1701761523 installed <13>Apr 13 07:46:16 rpmi: libgraphite2-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605157 installed <13>Apr 13 07:46:16 rpmi: zlib-devel-1.3.1-alt1 sisyphus+342532.100.1.1 1710232285 installed <13>Apr 13 07:46:16 rpmi: libgdbm-1.8.3-alt10 sisyphus+278100.1600.1.1 1626059138 installed <13>Apr 13 07:46:16 rpmi: xml-utils-1:2.12.5-alt1 sisyphus+342268.100.2.1 1710156418 installed <13>Apr 13 07:46:16 rpmi: libbrotlicommon-1.1.0-alt1 sisyphus+328501.100.1.1 1693598420 installed <13>Apr 13 07:46:16 rpmi: libbrotlidec-1.1.0-alt1 sisyphus+328501.100.1.1 1693598420 installed <13>Apr 13 07:46:16 rpmi: libharfbuzz-8.4.0-alt1 sisyphus+344161.100.1.1 1711987969 installed <13>Apr 13 07:46:16 rpmi: libfreetype-2.13.2-alt1 sisyphus+328677.100.1.1 1693834346 installed <13>Apr 13 07:46:16 rpmi: libfontconfig1-2.14.2-alt8 sisyphus+328444.100.1.1 1693553407 installed <13>Apr 13 07:46:16 rpmi: libass9-0.17.1-alt1 sisyphus+315891.100.1.1 1677487409 installed <13>Apr 13 07:46:16 rpmi: libharfbuzz-icu-8.4.0-alt1 sisyphus+344161.100.1.1 1711987969 installed <13>Apr 13 07:46:16 rpmi: libbrotlienc-1.1.0-alt1 sisyphus+328501.100.1.1 1693598420 installed <13>Apr 13 07:46:16 rpmi: libp11-kit-1:0.25.3-alt2 sisyphus+336533.100.1.1 1702645575 installed <13>Apr 13 07:46:16 rpmi: libXau-1.0.11-alt1 sisyphus+311428.100.1.1 1670577440 installed <13>Apr 13 07:46:16 rpmi: libXau-devel-1.0.11-alt1 sisyphus+311428.100.1.1 1670577440 installed <13>Apr 13 07:46:16 rpmi: libwoff2-1.0.2-alt3 sisyphus+302729.100.1.1 1656351541 installed <13>Apr 13 07:46:16 rpmi: fontconfig-2.14.2-alt8 sisyphus+328444.100.1.1 1693553407 installed Updating fonts cache: <29>Apr 13 07:46:17 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Apr 13 07:46:17 rpmi: libharfbuzz-gobject-8.4.0-alt1 sisyphus+344161.100.1.1 1711987969 installed <13>Apr 13 07:46:17 rpmi: rpm-build-gir-0.7.3-alt3.1 sisyphus+319393.100.1.1 1682538783 installed <13>Apr 13 07:46:17 rpmi: libgdbm-devel-1.8.3-alt10 sisyphus+278100.1600.1.1 1626059138 installed <13>Apr 13 07:46:17 rpmi: perl-devel-1:5.38.2-alt0.2 sisyphus+344512.40.2.1 1712358153 installed <13>Apr 13 07:46:17 rpmi: swig-data-1:4.1.1-alt8 sisyphus+339194.200.2.1 1706442289 installed <13>Apr 13 07:46:17 rpmi: libpng-devel-1.6.42-alt2 sisyphus+339555.100.1.1 1706781690 installed <13>Apr 13 07:46:17 rpmi: libgraphite2-devel-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605157 installed <13>Apr 13 07:46:17 rpmi: libsratom-0.6.16-alt1 sisyphus+341428.400.1.1 1708949213 installed <13>Apr 13 07:46:17 rpmi: liblilv-0.24.24-alt2 sisyphus+341494.100.1.1 1709024102 installed <13>Apr 13 07:46:17 rpmi: libglslang14-1:14.0.0-alt1 sisyphus+342474.200.2.1 1710160277 installed <13>Apr 13 07:46:17 rpmi: libshaderc1-2023.8-alt0.1 sisyphus+342281.1600.6.1 1709912024 installed <13>Apr 13 07:46:18 rpmi: libsamplerate-0.2.2-alt1 sisyphus+284642.100.1.1 1630906257 installed <13>Apr 13 07:46:18 rpmi: libinstpatch-1.1.6-alt1.1 sisyphus+279572.100.1.2 1626605112 installed <13>Apr 13 07:46:18 rpmi: libilmthread30-3.1.5-alt2.2 sisyphus+324124.100.1.1 1688379856 installed <13>Apr 13 07:46:18 rpmi: libopenexr30-3.1.5-alt2.2 sisyphus+324124.100.1.1 1688379856 installed <13>Apr 13 07:46:18 rpmi: libdvdnav-6.1.1-alt1 sisyphus+279367.100.1.1 1626478897 installed <13>Apr 13 07:46:18 rpmi: libhogweed6-3.9.1-alt1 sisyphus+322548.100.1.2 1686176897 installed <13>Apr 13 07:46:18 rpmi: libgnutls30-3.8.4-alt1 sisyphus+343729.100.2.1 1711570650 installed <13>Apr 13 07:46:18 rpmi: libngtcp2.16-1.4.0-alt1 sisyphus+343912.100.1.1 1711714686 installed <13>Apr 13 07:46:18 rpmi: libngtcp2_crypto_gnutls8-1.4.0-alt1 sisyphus+343912.100.1.1 1711714686 installed <13>Apr 13 07:46:18 rpmi: perl-File-Listing-6.16-alt1 sisyphus+325783.100.1.1 1690559356 installed <13>Apr 13 07:46:18 rpmi: hyphen-en-2.8.8-alt1 sisyphus+278186.100.1.1 1626075927 installed <13>Apr 13 07:46:18 rpmi: hyphen-ru-20020727-alt3 sisyphus+276848.100.1.1 1625243550 installed <13>Apr 13 07:46:18 rpmi: icu-utils-1:7.4.2-alt1 sisyphus+336372.200.1.1 1702422879 installed <13>Apr 13 07:46:18 rpmi: libicu-devel-1:7.4.2-alt1 sisyphus+336372.200.1.1 1702422879 installed <13>Apr 13 07:46:18 rpmi: libvidstab-1.1.0-alt2.1 sisyphus+279558.100.1.2 1626596086 installed <13>Apr 13 07:46:18 rpmi: libsoundtouch-2.3.3-alt1 sisyphus+344043.100.1.1 1711799526 installed <13>Apr 13 07:46:18 rpmi: libboost_atomic1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:18 rpmi: libboost_contract1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:18 rpmi: libboost_chrono1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:18 rpmi: libboost_timer1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:18 rpmi: libboost_thread1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:18 rpmi: libboost_type_erasure1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:18 rpmi: libboost_filesystem1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:18 rpmi: libavc1394-0.5.4-alt2 sisyphus+284572.100.1.1 1630712942 installed <13>Apr 13 07:46:18 rpmi: libyuv-0.0.1874-alt1 sisyphus+326054.40.2.1 1690679429 installed <13>Apr 13 07:46:18 rpmi: libvoikko-4.3.2-alt1_3 sisyphus+328233.100.1.1 1693337993 installed <13>Apr 13 07:46:18 rpmi: voikko-fi-2.5-alt1_3 sisyphus+312416.100.1.1 1671876516 installed <13>Apr 13 07:46:18 rpmi: libncurses6-6.3.20220618-alt4 sisyphus+327286.4600.14.1 1711486782 installed <13>Apr 13 07:46:18 rpmi: libtinfo-devel-6.3.20220618-alt4 sisyphus+327286.4600.14.1 1711486782 installed <13>Apr 13 07:46:18 rpmi: libncurses-devel-6.3.20220618-alt4 sisyphus+327286.4600.14.1 1711486782 installed <13>Apr 13 07:46:18 rpmi: libmspack-1.11-alt1 sisyphus+319133.100.1.1 1682243803 installed <13>Apr 13 07:46:18 rpmi: libevdev-1.13.1-alt1 sisyphus+319955.100.1.1 1683290015 installed <13>Apr 13 07:46:18 rpmi: libhunspell-1.7.2-alt1 sisyphus+328124.2500.1.1 1693250344 installed <13>Apr 13 07:46:18 rpmi: libbacktrace-1.0-alt0.3.gcdb64b6 sisyphus+324404.100.1.1 1688722839 installed <13>Apr 13 07:46:18 rpmi: librav1e-0.7.1-alt1 sisyphus+338722.100.1.1 1706001590 installed <13>Apr 13 07:46:18 rpmi: libavif-1.0.4-alt1 sisyphus+341252.200.2.1 1708602887 installed <13>Apr 13 07:46:18 rpmi: libaspell-0.60.8-alt2 sisyphus+328357.100.1.1 1693435314 installed <13>Apr 13 07:46:18 rpmi: libenchant2-1:2.6.4-alt1 sisyphus+339912.200.1.1 1707218909 installed <13>Apr 13 07:46:18 rpmi: libICE-1.1.1-alt1 sisyphus+311428.500.1.1 1670577559 installed <13>Apr 13 07:46:18 rpmi: libSM-1.2.4-alt1 sisyphus+312057.200.1.1 1671526918 installed <13>Apr 13 07:46:18 rpmi: highway-libs-1.1.0-alt1 sisyphus+341019.100.4.1 1708516183 installed <13>Apr 13 07:46:18 rpmi: libwavpack-5.7.0-alt1 sisyphus+342915.100.1.1 1710636759 installed <13>Apr 13 07:46:18 rpmi: libtag-1.12-alt1 sisyphus+277260.100.1.1 1625423544 installed <13>Apr 13 07:46:18 rpmi: libpcre3-8.45-alt2 sisyphus+283722.100.1.2 1629848216 installed <13>Apr 13 07:46:19 rpmi: libslang2-2.3.3-alt1 sisyphus+314492.100.1.1 1675240397 installed <13>Apr 13 07:46:19 rpmi: libvisual0.4-0.4.0-alt3 sisyphus+276250.100.1.2 1624927464 installed <13>Apr 13 07:46:19 rpmi: libgraphene-1.10.8-alt1 sisyphus+296855.100.1.1 1647633387 installed <13>Apr 13 07:46:19 rpmi: libcdparanoia-1:10.2-alt6 sisyphus+278521.100.1.1 1626108248 installed <13>Apr 13 07:46:19 rpmi: libvo-amrwbenc-0.1.3-alt1 sisyphus+275410.100.1.2 1624504622 installed <13>Apr 13 07:46:19 rpmi: libvo-aacenc-0.1.3-alt2 sisyphus+285812.100.1.1 1632410892 installed <13>Apr 13 07:46:19 rpmi: libsrtp2-2.6.0-alt1 sisyphus+341594.100.1.1 1709111211 installed <13>Apr 13 07:46:19 rpmi: libopenh264-2.4.1-alt1 sisyphus+339659.100.1.1 1706889418 installed <13>Apr 13 07:46:19 rpmi: libtbb-2021.10.0-alt1.1 sisyphus+333513.113100.79.1 1705098475 installed <13>Apr 13 07:46:19 rpmi: libprotobuf32-3.21.12-alt4 sisyphus+333513.56640.73.1 1704653205 installed <13>Apr 13 07:46:19 rpmi: libglog-0.5.0-alt1 sisyphus+291409.100.1.1 1638655129 installed <13>Apr 13 07:46:19 rpmi: libopenal1-1.22.2-alt2 sisyphus+331513.100.1.2 1697028603 installed <13>Apr 13 07:46:19 rpmi: libmodplug-0.8.9.0-alt1 sisyphus+275375.100.2.2 1624495419 installed <13>Apr 13 07:46:19 rpmi: libyajl-2.1.0-alt3 sisyphus+322972.100.1.1 1686724493 installed <13>Apr 13 07:46:19 rpmi: libxkbcommon-1.7.0-alt1.1 sisyphus+343672.100.1.1 1711490815 installed <13>Apr 13 07:46:19 rpmi: usbids-20240206-alt1 sisyphus+339943.100.1.1 1707270512 installed <13>Apr 13 07:46:19 rpmi: pciids-20240408-alt1 sisyphus+344669.100.1.1 1712583815 installed <13>Apr 13 07:46:19 rpmi: hwdata-0.374-alt1 sisyphus+329322.100.1.1 1694450297 installed <13>Apr 13 07:46:19 rpmi: gtk+3-themes-incompatible-3.20-alt3 1461944560 installed <13>Apr 13 07:46:19 rpmi: perl-Try-Tiny-0.31-alt1 sisyphus+290597.100.1.1 1637915507 installed <13>Apr 13 07:46:19 rpmi: perl-IO-Socket-IP-0.42-alt1 sisyphus+325815.100.1.2 1690571193 installed <13>Apr 13 07:46:19 rpmi: perl-Module-Load-0.36-alt1 sisyphus+258992.100.1.1 1601543407 installed <13>Apr 13 07:46:19 rpmi: perl-Compress-Raw-Bzip2-2.210-alt1 sisyphus+343108.100.1.3 1710881036 installed <13>Apr 13 07:46:19 rpmi: perl-IO-Compress-Brotli-2:0.004001-alt3 sisyphus+335067.1200.1.1 1700901700 installed <13>Apr 13 07:46:19 rpmi: perl-Clone-0.46-alt1 sisyphus+335067.1100.1.1 1700901674 installed <13>Apr 13 07:46:19 rpmi: perl-HTML-Tagset-3.24-alt1 sisyphus+343117.100.1.3 1710883587 installed <13>Apr 13 07:46:19 rpmi: perl-Term-ANSIColor-5.01-alt1 sisyphus+244783.100.1.2 1579747505 installed <13>Apr 13 07:46:19 rpmi: perl-Data-Dump-1.25-alt1 sisyphus+276551.100.1.1 1625126880 installed <13>Apr 13 07:46:19 rpmi: perl-Filter-1.64-alt1 sisyphus+335067.400.1.1 1700901530 installed <13>Apr 13 07:46:19 rpmi: perl-Encode-3.21-alt1 sisyphus+343095.100.1.1 1710875480 installed <13>Apr 13 07:46:19 rpmi: perl-URI-5.27-alt1 sisyphus+340901.100.1.1 1708180683 installed <13>Apr 13 07:46:19 rpmi: perl-IO-Compress-2.206-alt1 sisyphus+325819.100.1.1 1690563199 installed <13>Apr 13 07:46:19 rpmi: perl-Net-HTTP-6.23-alt1 sisyphus+323470.100.1.1 1687422469 installed <13>Apr 13 07:46:19 rpmi: perl-HTML-Parser-3.82-alt1 sisyphus+343116.100.1.3 1710883258 installed <13>Apr 13 07:46:19 rpmi: perl-WWW-RobotRules-6.02-alt1 1329756211 installed <13>Apr 13 07:46:19 rpmi: perl-Encode-Locale-1.05-alt1 1444608613 installed <13>Apr 13 07:46:19 rpmi: perl-IO-HTML-1.004-alt1 sisyphus+258983.100.1.1 1601542619 installed <13>Apr 13 07:46:19 rpmi: perl-HTTP-Message-6.45-alt1 sisyphus+330728.100.1.1 1696162276 installed <13>Apr 13 07:46:19 rpmi: perl-HTTP-Negotiate-6.01-alt1 1329760563 installed <13>Apr 13 07:46:19 rpmi: perl-libwww-6.77-alt1 sisyphus+343120.100.1.2 1710884405 installed <13>Apr 13 07:46:19 rpmi: perl-XML-LibXML-2.0210-alt4 sisyphus+342491.100.1.1 1710160239 installed <13>Apr 13 07:46:19 rpmi: perl-XML-SAX-1.02-alt1 sisyphus+232322.100.1.1 1560758406 installed <13>Apr 13 07:46:19 rpmi: perl-XML-Simple-2.25-alt2 sisyphus+257498.100.1.1 1599324034 installed <13>Apr 13 07:46:19 rpmi: icon-naming-utils-0.8.90-alt1 sisyphus+276851.100.1.1 1625243947 installed <13>Apr 13 07:46:19 rpmi: icon-theme-adwaita-46.0-alt1 sisyphus+343025.200.4.2 1710847162 installed <13>Apr 13 07:46:19 rpmi: liblash-1:0.5.4-alt1_51 sisyphus+318973.100.1.1 1682020747 installed <13>Apr 13 07:46:19 rpmi: libwebrtc-audio-processing-1.3-alt2 sisyphus+332026.100.1.1 1697579432 installed <13>Apr 13 07:46:20 rpmi: libmysofa-1.3.2-alt1 sisyphus+335142.100.1.1 1701003747 installed <13>Apr 13 07:46:20 rpmi: libldac2-2.0.2.3-alt0.1 sisyphus+278007.100.1.2 1625973035 installed <13>Apr 13 07:46:20 rpmi: libsigc++2-2.12.1-alt1 sisyphus+331046.200.2.1 1696511642 installed <13>Apr 13 07:46:20 rpmi: libconfig-c++-1.5-alt3 sisyphus+286668.100.1.1 1633707356 installed <13>Apr 13 07:46:20 rpmi: libfdk-aac2-2.0.3-alt0.1 sisyphus+338863.100.1.1 1706094242 installed <13>Apr 13 07:46:20 rpmi: libtdb-1.4.9-alt1 sisyphus+333513.3240.71.1 1704535489 installed <13>Apr 13 07:46:20 rpmi: libltdl7-2.4.7-alt5 sisyphus+341963.200.3.1 1711659248 installed <13>Apr 13 07:46:20 rpmi: libasyncns-0.8-alt2.qa1 sisyphus+275091.100.1.1 1624402242 installed <13>Apr 13 07:46:20 rpmi: sound-theme-freedesktop-0.8-alt1 sisyphus+277010.100.1.2 1625346634 installed <13>Apr 13 07:46:20 rpmi: libyaml2-0.2.5-alt1 sisyphus+278391.100.1.1 1626094932 installed <13>Apr 13 07:46:20 rpmi: libgtest-1.13.0-alt2 sisyphus+318771.100.1.1 1681838180 installed <13>Apr 13 07:46:20 rpmi: libbluez-5.73-alt1 sisyphus+342821.200.2.1 1710540394 installed <13>Apr 13 07:46:20 rpmi: libfaad2-2.11.1-alt1 sisyphus+338260.100.2.2 1705755212 installed <13>Apr 13 07:46:20 rpmi: libfaac0-1.28-alt2 sisyphus+275719.100.1.1 1624749514 installed <13>Apr 13 07:46:20 rpmi: libdca0-0.0.5-alt4.qa1 sisyphus+275349.100.1.2 1624487409 installed <13>Apr 13 07:46:20 rpmi: libzxing-cpp-2.2.1-alt1 sisyphus+336233.100.1.1 1702264527 installed <13>Apr 13 07:46:20 rpmi: libgme-0.6.3-alt2 sisyphus+293048.100.1.1 1641452309 installed <13>Apr 13 07:46:20 rpmi: libudfread-1.1.2-alt2 sisyphus+286325.100.1.1 1633263314 installed <13>Apr 13 07:46:20 rpmi: libbluray-1.3.4-alt1 sisyphus+310888.100.1.1 1669800491 installed <13>Apr 13 07:46:20 rpmi: libzimg2-3.0.5-alt1 sisyphus+324805.100.1.1 1689254330 installed <13>Apr 13 07:46:20 rpmi: libfftw3-common-3.3.8-alt3 sisyphus+334479.300.3.1 1700076523 installed <13>Apr 13 07:46:20 rpmi: libfftw3-3.3.8-alt3 sisyphus+334479.300.3.1 1700076611 installed <13>Apr 13 07:46:20 rpmi: libchromaprint1-1.5.1-alt1 sisyphus+324130.100.1.1 1688382114 installed <13>Apr 13 07:46:20 rpmi: librubberband-3.3.0-alt1 sisyphus+328096.300.3.1 1693230967 installed <13>Apr 13 07:46:20 rpmi: vulkan-filesystem-1.3.277-alt1 sisyphus+342474.300.2.1 1710160423 installed <13>Apr 13 07:46:20 rpmi: libvulkan1-1.3.277-alt1 sisyphus+342474.300.2.1 1710160455 installed <13>Apr 13 07:46:20 rpmi: libunwind-1.7.0-alt2 sisyphus+335269.100.1.1 1701110935 installed <13>Apr 13 07:46:20 rpmi: libdovi3-2.1.0-alt1 sisyphus+334014.100.1.1 1699528219 installed <13>Apr 13 07:46:20 rpmi: libplacebo338-6.338.2-alt0.2 sisyphus+341163.100.1.1 1708438286 installed <13>Apr 13 07:46:20 rpmi: libsoxr-0.1.3-alt1.1 sisyphus+317908.100.1.1 1680415071 installed <13>Apr 13 07:46:20 rpmi: libxvid-1.3.7-alt1 sisyphus+292833.100.1.1 1640949611 installed <13>Apr 13 07:46:20 rpmi: libnuma-2.0.14-alt2 sisyphus+278485.100.1.1 1626104243 installed <13>Apr 13 07:46:20 rpmi: libx265-199-3.5-alt1.1 sisyphus+277560.100.1.1 1625696944 installed <13>Apr 13 07:46:20 rpmi: libx264-164-alt1.1 sisyphus+322210.100.1.1 1685494886 installed <13>Apr 13 07:46:20 rpmi: libxshmfence-1.3.2-alt1 sisyphus+311428.400.1.1 1670577529 installed <13>Apr 13 07:46:20 rpmi: libpciaccess-1:0.18.1-alt1 sisyphus+343583.300.1.1 1711440792 installed <13>Apr 13 07:46:20 rpmi: libdrm-1:2.4.120-alt1 sisyphus+338137.100.1.2 1705653180 installed <13>Apr 13 07:46:20 rpmi: libsnappy-1.1.7-alt1 sisyphus+276400.100.1.2 1625016400 installed <13>Apr 13 07:46:20 rpmi: libdatrie-0.2.13-alt1_7 sisyphus+328221.100.1.1 1693336967 installed <13>Apr 13 07:46:20 rpmi: libthai-0.1.29-alt1_6 sisyphus+328230.100.1.2 1693348044 installed <13>Apr 13 07:46:20 rpmi: libdeflate-1.20-alt1 sisyphus+343488.100.1.1 1711323986 installed <13>Apr 13 07:46:20 rpmi: libtiff5-4.4.0-alt4 sisyphus+322581.100.1.2 1686180093 installed <13>Apr 13 07:46:20 rpmi: libgdk-pixbuf-locales-2.42.10-alt1 sisyphus+308991.100.1.1 1666721198 installed <13>Apr 13 07:46:20 rpmi: libopencore-amrwb0-0.1.6-alt1 sisyphus+307923.100.1.1 1665032485 installed <13>Apr 13 07:46:20 rpmi: libopencore-amrnb0-0.1.6-alt1 sisyphus+307923.100.1.1 1665032485 installed <13>Apr 13 07:46:20 rpmi: libcodec2_1.2-1.2.0-alt1 sisyphus+340564.40.2.1 1707820764 installed <13>Apr 13 07:46:20 rpmi: gobject-introspection-1.80.1-alt1 sisyphus+344154.100.1.3 1711984697 installed <13>Apr 13 07:46:20 rpmi: libjson-c5-0.17-alt1 sisyphus+332175.100.1.1 1697724741 installed <13>Apr 13 07:46:20 rpmi: libCharLS2-2.0.0-alt1_3 sisyphus+276376.100.1.1 1624988381 installed <13>Apr 13 07:46:20 rpmi: gcc-c++-common-1.4.27-alt1 sisyphus+278099.1300.1.1 1626028636 installed <13>Apr 13 07:46:21 rpmi: libstdc++13-devel-13.2.1-alt3 sisyphus+339335.100.1.1 1706563095 installed <13>Apr 13 07:46:22 rpmi: gcc13-c++-13.2.1-alt3 sisyphus+339335.100.1.1 1706563095 installed <13>Apr 13 07:46:22 rpmi: libpixman-3:0.43.4-alt2 sisyphus+344164.100.1.1 1711987947 installed <13>Apr 13 07:46:22 rpmi: libmpdec3-2.5.1-alt3 sisyphus+314490.500.5.1 1675432033 installed <13>Apr 13 07:46:22 rpmi: libb2-0.98.1-alt1_1 sisyphus+291614.100.1.1 1638962878 installed <13>Apr 13 07:46:22 rpmi: libdevmapper-1.02.196-alt1 sisyphus+328928.400.3.1 1694103939 installed <13>Apr 13 07:46:22 rpmi: mount-2.39.2-alt1 sisyphus+327286.4500.14.1 1711486360 installed <13>Apr 13 07:46:22 rpmi: losetup-2.39.2-alt1 sisyphus+327286.4500.14.1 1711486360 installed <13>Apr 13 07:46:22 rpmi: lsblk-2.39.2-alt1 sisyphus+327286.4500.14.1 1711486360 installed <13>Apr 13 07:46:22 rpmi: dconf-profile-0.1-alt1 sisyphus+325633.340.3.1 1690415358 installed <13>Apr 13 07:46:22 rpmi: cmake-modules-3.29.1-alt1 sisyphus+344518.200.3.1 1712379665 installed <13>Apr 13 07:46:22 rpmi: libuv-1.48.0-alt1 sisyphus+340945.100.1.1 1708265067 installed <13>Apr 13 07:46:22 rpmi: librhash-1.3.5-alt3 sisyphus+286141.40.2.1 1632982456 installed <13>Apr 13 07:46:23 rpmi: libjsoncpp24-1.9.4-alt2 sisyphus+286441.100.1.1 1633444234 installed <13>Apr 13 07:46:23 rpmi: publicsuffix-list-dafsa-20240130-alt1 sisyphus+339506.100.1.1 1706719111 installed <13>Apr 13 07:46:23 rpmi: libpsl-0.21.5-alt1 sisyphus+338474.100.1.1 1705684771 installed <13>Apr 13 07:46:23 rpmi: libnghttp3.9-1.2.0-alt1 sisyphus+343912.200.1.1 1711714731 installed <13>Apr 13 07:46:23 rpmi: libnghttp2-1.61.0-alt1 sisyphus+344450.100.1.1 1712304122 installed <13>Apr 13 07:46:23 rpmi: openldap-common-2.6.7-alt1 sisyphus+343335.200.1.1 1711113916 installed <13>Apr 13 07:46:23 rpmi: libntlm-1.5-alt1 sisyphus+278100.3300.1.1 1626059663 installed <13>Apr 13 07:46:23 rpmi: libidn-1.37-alt2 sisyphus+300849.100.1.1 1653769693 installed <13>Apr 13 07:46:23 rpmi: libverto-0.3.2-alt1_1 sisyphus+321176.2200.10.2 1684806164 installed <13>Apr 13 07:46:23 rpmi: liblmdb-0.9.32-alt1 sisyphus+342426.100.1.1 1710124284 installed <13>Apr 13 07:46:23 rpmi: libkeyutils-1.6.3-alt1 sisyphus+266061.100.1.1 1612919567 installed <13>Apr 13 07:46:23 rpmi: libcom_err-1.46.4.0.5.4cda-alt1 sisyphus+283826.100.1.1 1629975361 installed <13>Apr 13 07:46:23 rpmi: rpm-macros-cmake-3.29.1-alt1 sisyphus+344518.300.3.1 1712379787 installed <13>Apr 13 07:46:23 rpmi: bubblewrap-0.8.0-alt1 sisyphus+315970.100.1.1 1677573593 installed <13>Apr 13 07:46:23 rpmi: libboost_context1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:23 rpmi: libboost_fiber1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:23 rpmi: libboost_stacktrace1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:23 rpmi: libboost_nowide1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:23 rpmi: libboost_url1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:23 rpmi: libboost_test1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:23 rpmi: libboost_serialization1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:23 rpmi: libboost_random1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:23 rpmi: libboost_iostreams1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:23 rpmi: libboost_json1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:23 rpmi: libboost_regex1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:23 rpmi: libboost_graph1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:23 rpmi: libboost_date_time1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:23 rpmi: libboost_container1.84.0-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:23 rpmi: libquadmath0-13.2.1-alt3 sisyphus+339335.100.1.1 1706563095 installed <13>Apr 13 07:46:23 rpmi: libquadmath13-devel-13.2.1-alt3 sisyphus+339335.100.1.1 1706563095 installed <13>Apr 13 07:46:23 rpmi: libquadmath-devel-13-alt1 sisyphus+323337.300.1.1 1687268227 installed <13>Apr 13 07:46:25 rpmi: boost-devel-headers-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802659 installed <13>Apr 13 07:46:25 rpmi: boost-devel-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:25 rpmi: desktop-file-utils-0.26-alt6 sisyphus+331944.100.1.3 1697550035 installed <13>Apr 13 07:46:25 rpmi: shared-mime-info-2.4-alt1 sisyphus+334259.100.1.1 1699787317 installed <13>Apr 13 07:46:25 rpmi: gsettings-desktop-schemas-data-46.0-alt1 sisyphus+343025.100.4.2 1710847127 installed <13>Apr 13 07:46:25 rpmi: libgio-2.80.0-alt2.1 sisyphus+343856.100.1.1 1711642825 installed <13>Apr 13 07:46:25 rpmi: gsettings-desktop-schemas-46.0-alt1 sisyphus+343025.100.4.2 1710847126 installed <13>Apr 13 07:46:25 rpmi: libgstreamer1.0-1.24.2-alt1 sisyphus+307774.100.1.1 1712733718 installed <13>Apr 13 07:46:25 rpmi: libgdk-pixbuf-2.42.10-alt1 sisyphus+308991.100.1.1 1666721201 installed <13>Apr 13 07:46:25 rpmi: gstreamer1.0-1.24.2-alt1 sisyphus+307774.100.1.1 1712733718 installed <13>Apr 13 07:46:25 rpmi: libgstreamer1.0-gir-1.24.2-alt1 sisyphus+307774.100.1.1 1712733718 installed <13>Apr 13 07:46:25 rpmi: libglibmm-2.66.7-alt1 sisyphus+344717.100.1.1 1712649444 installed <13>Apr 13 07:46:25 rpmi: libjson-glib-1.8.0-alt1 sisyphus+325066.600.6.2 1695204016 installed <13>Apr 13 07:46:25 rpmi: libgusb-0.4.8-alt1 sisyphus+333854.100.1.1 1699389324 installed <13>Apr 13 07:46:25 rpmi: libcolord-1.4.7-alt1.1 sisyphus+338793.100.1.1 1706039037 installed <13>Apr 13 07:46:25 rpmi: libxml++2-2.42.3-alt1 sisyphus+338062.100.1.2 1705656008 installed <13>Apr 13 07:46:25 rpmi: libffado-2.4.8-alt1.2 sisyphus+344475.100.1.1 1712313688 installed <13>Apr 13 07:46:25 rpmi: gtk4-update-icon-cache-4.14.2-alt1 sisyphus+344316.100.1.1 1712176520 installed <13>Apr 13 07:46:25 rpmi: libjxl0.10-0.10.2-alt1 sisyphus+342296.100.1.1 1709909585 installed <13>Apr 13 07:46:25 rpmi: libjxl-pixbuf-loader-0.10.2-alt1 sisyphus+342296.100.1.1 1709909585 installed <13>Apr 13 07:46:25 rpmi: libnotify-0.8.3-alt1 sisyphus+331330.100.1.1 1696929868 installed <13>Apr 13 07:46:25 rpmi: libdconf-0.40.0-alt3 sisyphus+325650.100.1.1 1690417204 installed <13>Apr 13 07:46:25 rpmi: libnice-0.1.22-alt1 sisyphus+342031.100.1.1 1709629228 installed <13>Apr 13 07:46:25 rpmi: libmanette-0.2.7-alt1 sisyphus+340216.100.1.1 1707504426 installed <13>Apr 13 07:46:25 rpmi: libsecret-0.21.4-alt1 sisyphus+341317.100.1.1 1708732350 installed <13>Apr 13 07:46:25 rpmi: xdg-dbus-proxy-0.1.5-alt1 sisyphus+326739.100.1.1 1691485907 installed <13>Apr 13 07:46:25 rpmi: systemd-modules-common-1:254.10-alt1 sisyphus+343748.100.3.1 1711611773 installed <13>Apr 13 07:46:25 rpmi: systemd-sysctl-common-1:254.10-alt1 sisyphus+343748.100.3.1 1711611802 installed <13>Apr 13 07:46:25 rpmi: systemd-tmpfiles-common-1:254.10-alt1 sisyphus+343748.100.3.1 1711611773 installed <13>Apr 13 07:46:25 rpmi: systemd-utils-filetriggers-1:254.10-alt1 sisyphus+343748.100.3.1 1711611773 installed <13>Apr 13 07:46:26 rpmi: libfdisk-2.39.2-alt1 sisyphus+327286.4500.14.1 1711486360 installed <13>Apr 13 07:46:26 rpmi: libX11-locales-3:1.8.8-alt1 sisyphus+343583.100.1.1 1711440719 installed <13>Apr 13 07:46:26 rpmi: libXdmcp-1.1.5-alt1 sisyphus+343583.700.1.1 1711441073 installed <13>Apr 13 07:46:26 rpmi: libxcb-1.16.1-alt1 sisyphus+343583.500.1.1 1711440989 installed <13>Apr 13 07:46:26 rpmi: libX11-3:1.8.8-alt1 sisyphus+343583.100.1.1 1711440722 installed <13>Apr 13 07:46:26 rpmi: libXext-1.3.6-alt1 sisyphus+343583.1000.1.1 1711441114 installed <13>Apr 13 07:46:26 rpmi: libXrender-0.9.11-alt1 sisyphus+308841.100.1.1 1666436131 installed <13>Apr 13 07:46:26 rpmi: libcairo-1:1.18.0-alt1 sisyphus+330227.100.1.1 1695539082 installed <13>Apr 13 07:46:26 rpmi: libXfixes-6.0.1-alt1 sisyphus+331490.300.1.1 1697023235 installed <13>Apr 13 07:46:26 rpmi: libcairo-gobject-1:1.18.0-alt1 sisyphus+330227.100.1.1 1695539082 installed <13>Apr 13 07:46:26 rpmi: libXi-1.8-alt1 sisyphus+285490.200.1.1 1632124180 installed <13>Apr 13 07:46:26 rpmi: libXtst-1.2.4-alt1 sisyphus+308663.1300.1.1 1666168504 installed <13>Apr 13 07:46:26 rpmi: libgbm-4:24.0.5-alt1 sisyphus+344984.100.1.1 1712917237 installed <13>Apr 13 07:46:26 rpmi: libXrandr-1.5.4-alt1 sisyphus+330992.100.1.1 1696485401 installed <13>Apr 13 07:46:26 rpmi: libXxf86vm-1.1.5-alt1 sisyphus+308663.1400.1.1 1666168534 installed <13>Apr 13 07:46:26 rpmi: libGLX-mesa-4:24.0.5-alt1 sisyphus+344984.100.1.1 1712917237 installed <13>Apr 13 07:46:26 rpmi: libGLX-7:1.7.0-alt1 sisyphus+330949.100.1.1 1696424894 installed <13>Apr 13 07:46:26 rpmi: libGL-7:1.7.0-alt1 sisyphus+330949.100.1.1 1696424894 installed <13>Apr 13 07:46:26 rpmi: libva-2.21.0-alt1 sisyphus+344036.100.1.1 1711790915 installed <13>Apr 13 07:46:26 rpmi: libXv-1.0.12-alt1 sisyphus+311188.600.1.1 1670233801 installed <13>Apr 13 07:46:26 rpmi: libzvbi-0.2.35-alt2 sisyphus+275416.100.1.3 1624507130 installed <13>Apr 13 07:46:26 rpmi: libXdamage-1.1.6-alt1 sisyphus+311188.300.1.1 1670233713 installed <13>Apr 13 07:46:28 rpmi: libxcb-devel-1.16.1-alt1 sisyphus+343583.500.1.1 1711440989 installed <13>Apr 13 07:46:28 rpmi: libX11-devel-3:1.8.8-alt1 sisyphus+343583.100.1.1 1711440722 installed <13>Apr 13 07:46:28 rpmi: libXrender-devel-0.9.11-alt1 sisyphus+308841.100.1.1 1666436131 installed <13>Apr 13 07:46:28 rpmi: libXext-devel-1.3.6-alt1 sisyphus+343583.1000.1.1 1711441114 installed <13>Apr 13 07:46:28 rpmi: libEGL-mesa-4:24.0.5-alt1 sisyphus+344984.100.1.1 1712917237 installed <13>Apr 13 07:46:28 rpmi: libEGL-7:1.7.0-alt1 sisyphus+330949.100.1.1 1696424894 installed <13>Apr 13 07:46:29 rpmi: libgst-plugins1.0-1.24.2-alt1 sisyphus+307774.200.1.1 1712733863 installed <13>Apr 13 07:46:29 rpmi: libgst-plugins1.0-gir-1.24.2-alt1 sisyphus+307774.200.1.1 1712733863 installed <13>Apr 13 07:46:29 rpmi: libXcursor-1.2.2-alt1 sisyphus+343583.600.1.1 1711441036 installed <13>Apr 13 07:46:29 rpmi: libharfbuzz-cairo-8.4.0-alt1 sisyphus+344161.100.1.1 1711987969 installed <13>Apr 13 07:46:29 rpmi: libXft-2.3.8-alt1 sisyphus+331490.400.1.1 1697023273 installed <13>Apr 13 07:46:29 rpmi: libpango-1.52.2-alt1 sisyphus+344075.100.1.1 1711911780 installed <13>Apr 13 07:46:29 rpmi: librsvg-1:2.58.0-alt1 sisyphus+342941.200.1.1 1710698850 installed <13>Apr 13 07:46:29 rpmi: libvdpau-1:1.5-alt1 sisyphus+298034.100.1.1 1649336827 installed <13>Apr 13 07:46:29 rpmi: libavutil58-2:6.1.1-alt3 sisyphus+342582.100.1.1 1710266035 installed <13>Apr 13 07:46:29 rpmi: libswscale7-2:6.1.1-alt3 sisyphus+342582.100.1.1 1710266035 installed <13>Apr 13 07:46:29 rpmi: libswresample4-2:6.1.1-alt3 sisyphus+342582.100.1.1 1710266035 installed <13>Apr 13 07:46:30 rpmi: libavcodec60-2:6.1.1-alt3 sisyphus+342582.100.1.1 1710266035 installed <13>Apr 13 07:46:30 rpmi: libpostproc57-2:6.1.1-alt3 sisyphus+342582.100.1.1 1710266035 installed <13>Apr 13 07:46:30 rpmi: libXinerama-1.1.5-alt1 sisyphus+309287.100.1.1 1667213209 installed <13>Apr 13 07:46:30 rpmi: xprop-1.2.5-alt1 sisyphus+279025.100.1.1 1626354193 installed <13>Apr 13 07:46:30 rpmi: libXcomposite-0.4.6-alt1 sisyphus+311188.200.1.1 1670233684 installed <13>Apr 13 07:46:30 rpmi: libcaca-0.99-alt23 sisyphus+328092.100.2.1 1693282276 installed <13>Apr 13 07:46:30 rpmi: liblz4-1:1.9.4-alt1 sisyphus+309416.100.1.1 1667413000 installed <13>Apr 13 07:46:30 rpmi: libsystemd-1:254.10-alt1 sisyphus+343748.100.3.1 1711611802 installed <13>Apr 13 07:46:30 rpmi: libdbus-1.14.10-alt1 sisyphus+327286.5700.14.1 1711487513 installed <13>Apr 13 07:46:30 rpmi: libpulseaudio-17.0-alt2 sisyphus+339257.100.1.1 1706519233 installed <13>Apr 13 07:46:30 rpmi: libat-spi2-core-2.52.0-alt1 sisyphus+342903.100.1.1 1710606495 installed <13>Apr 13 07:46:30 rpmi: libavahi-0.8-alt4 sisyphus+344258.100.1.1 1712133862 installed <13>Apr 13 07:46:31 rpmi: libjavascriptcoregtk4-2.44.1-alt1 sisyphus+344767.100.1.3 1712687441 installed <13>Apr 13 07:46:31 rpmi: at-spi2-atk-2.52.0-alt1 sisyphus+342903.100.1.1 1710606495 installed <13>Apr 13 07:46:31 rpmi: dbus-tools-1.14.10-alt1 sisyphus+327286.5700.14.1 1711487513 installed <86>Apr 13 07:46:31 groupadd[1649367]: group added to /etc/group: name=messagebus, GID=999 <86>Apr 13 07:46:31 groupadd[1649367]: group added to /etc/gshadow: name=messagebus <86>Apr 13 07:46:31 groupadd[1649367]: new group: name=messagebus, GID=999 <86>Apr 13 07:46:31 useradd[1649384]: new user: name=messagebus, UID=999, GID=999, home=/run/dbus, shell=/dev/null, from=none <13>Apr 13 07:46:31 rpmi: dbus-1.14.10-alt1 sisyphus+327286.5700.14.1 1711487513 installed <13>Apr 13 07:46:31 rpmi: dbus-tools-gui-1.14.10-alt1 sisyphus+327286.5700.14.1 1711487513 installed <13>Apr 13 07:46:31 rpmi: dconf-0.40.0-alt3 sisyphus+325650.100.1.1 1690417204 installed <13>Apr 13 07:46:31 rpmi: libgtk+3-schemas-3.24.41-alt1.1 sisyphus+343530.100.1.1 1711365587 installed <13>Apr 13 07:46:31 rpmi: libzbar-0.23.92-alt5 sisyphus+333513.112300.79.1 1705097843 installed <13>Apr 13 07:46:31 rpmi: libpolkit-124-alt1 sisyphus+340067.100.1.1 1707374992 installed <13>Apr 13 07:46:31 rpmi: rpm-macros-alternatives-0.5.2-alt2 sisyphus+315270.200.2.1 1676457367 installed <13>Apr 13 07:46:31 rpmi: alternatives-0.5.2-alt2 sisyphus+315270.200.2.1 1676457367 installed <13>Apr 13 07:46:31 rpmi: ca-certificates-2024.02.24-alt1 sisyphus+341362.100.1.1 1708791001 installed <13>Apr 13 07:46:31 rpmi: ca-trust-0.2.0-alt1 sisyphus+344843.100.1.1 1712743326 installed <13>Apr 13 07:46:31 rpmi: p11-kit-trust-1:0.25.3-alt2 sisyphus+336533.100.1.1 1702645575 installed <13>Apr 13 07:46:31 rpmi: libcrypto3-3.1.5-alt2 sisyphus+343320.140.3.1 1711982452 installed <13>Apr 13 07:46:31 rpmi: libssl3-3.1.5-alt2 sisyphus+343320.140.3.1 1711982452 installed <13>Apr 13 07:46:31 rpmi: python3-3.12.2-alt1 sisyphus+341702.200.1.1 1709232959 installed <13>Apr 13 07:46:32 rpmi: python3-base-3.12.2-alt1 sisyphus+341702.200.1.1 1709232959 installed <86>Apr 13 07:46:32 groupadd[1651399]: group added to /etc/group: name=_keytab, GID=998 <86>Apr 13 07:46:32 groupadd[1651399]: group added to /etc/gshadow: name=_keytab <86>Apr 13 07:46:32 groupadd[1651399]: new group: name=_keytab, GID=998 <13>Apr 13 07:46:33 rpmi: libkrb5-1.21.2-alt2 sisyphus+338902.100.2.1 1706700985 installed <13>Apr 13 07:46:33 rpmi: libkmod-31-alt1 sisyphus+330699.100.1.1 1696072426 installed <13>Apr 13 07:46:33 rpmi: systemd-utils-standalone-1:254.10-alt1 sisyphus+343748.100.3.1 1711611802 installed <13>Apr 13 07:46:33 rpmi: at-spi2-core-2.52.0-alt1 sisyphus+342903.100.1.1 1710606495 installed <13>Apr 13 07:46:33 rpmi: kmod-31-alt1 sisyphus+330699.100.1.1 1696072426 installed <13>Apr 13 07:46:33 rpmi: dmsetup-1.02.196-alt1 sisyphus+328928.400.3.1 1694103939 installed <86>Apr 13 07:46:33 groupadd[1651979]: group added to /etc/group: name=tape, GID=997 <86>Apr 13 07:46:33 groupadd[1651979]: group added to /etc/gshadow: name=tape <86>Apr 13 07:46:33 groupadd[1651979]: new group: name=tape, GID=997 <86>Apr 13 07:46:33 groupadd[1651989]: group added to /etc/group: name=dialout, GID=996 <86>Apr 13 07:46:33 groupadd[1651989]: group added to /etc/gshadow: name=dialout <86>Apr 13 07:46:33 groupadd[1651989]: new group: name=dialout, GID=996 <86>Apr 13 07:46:33 groupadd[1652000]: group added to /etc/group: name=input, GID=995 <86>Apr 13 07:46:33 groupadd[1652000]: group added to /etc/gshadow: name=input <86>Apr 13 07:46:33 groupadd[1652000]: new group: name=input, GID=995 <86>Apr 13 07:46:33 groupadd[1652014]: group added to /etc/group: name=video, GID=994 <86>Apr 13 07:46:33 groupadd[1652014]: group added to /etc/gshadow: name=video <86>Apr 13 07:46:33 groupadd[1652014]: new group: name=video, GID=994 <86>Apr 13 07:46:33 groupadd[1652034]: group added to /etc/group: name=render, GID=993 <86>Apr 13 07:46:33 groupadd[1652034]: group added to /etc/gshadow: name=render <86>Apr 13 07:46:33 groupadd[1652034]: new group: name=render, GID=993 <86>Apr 13 07:46:33 groupadd[1652052]: group added to /etc/group: name=sgx, GID=992 <86>Apr 13 07:46:33 groupadd[1652052]: group added to /etc/gshadow: name=sgx <86>Apr 13 07:46:33 groupadd[1652052]: new group: name=sgx, GID=992 <13>Apr 13 07:46:33 rpmi: udev-1:254.10-alt1 sisyphus+343748.100.3.1 1711611802 installed <86>Apr 13 07:46:33 groupadd[1653409]: group added to /etc/group: name=colord, GID=991 <86>Apr 13 07:46:33 groupadd[1653409]: group added to /etc/gshadow: name=colord <86>Apr 13 07:46:33 groupadd[1653409]: new group: name=colord, GID=991 <86>Apr 13 07:46:33 useradd[1653424]: new user: name=colord, UID=998, GID=991, home=/var/colord, shell=/dev/null, from=none <13>Apr 13 07:46:33 rpmi: colord-1.4.7-alt1.1 sisyphus+338793.100.1.1 1706039037 installed <13>Apr 13 07:46:33 rpmi: libgsasl-2.2.0-alt1 sisyphus+333173.100.1.1 1698696961 installed <86>Apr 13 07:46:33 groupadd[1653512]: group added to /etc/group: name=sasl, GID=990 <86>Apr 13 07:46:33 groupadd[1653512]: group added to /etc/gshadow: name=sasl <86>Apr 13 07:46:33 groupadd[1653512]: new group: name=sasl, GID=990 <13>Apr 13 07:46:33 rpmi: libsasl2-3-2.1.28-alt2 sisyphus+343335.100.1.1 1711112524 installed <13>Apr 13 07:46:34 rpmi: libldap2-2.6.7-alt1 sisyphus+343335.200.1.1 1711113906 installed <13>Apr 13 07:46:34 rpmi: libssh-0.10.6-alt1 sisyphus+338050.100.1.2 1705656359 installed <13>Apr 13 07:46:34 rpmi: libcups-2.4.7-alt2 sisyphus+333092.100.1.1 1698654164 installed <13>Apr 13 07:46:34 rpmi: libgtk+3-3.24.41-alt1.1 sisyphus+343530.100.1.1 1711365614 installed <13>Apr 13 07:46:34 rpmi: libneon-0.32.5-alt1 sisyphus+337867.100.1.2 1705641068 installed <13>Apr 13 07:46:34 rpmi: python3-module-packaging-24.0-alt1 sisyphus+342487.100.2.1 1710407438 installed <13>Apr 13 07:46:35 rpmi: glib2-devel-2.80.0-alt2.1 sisyphus+343856.100.1.1 1711642825 installed <13>Apr 13 07:46:35 rpmi: libcairo-devel-1:1.18.0-alt1 sisyphus+330227.100.1.1 1695539082 installed <13>Apr 13 07:46:35 rpmi: fontconfig-devel-2.14.2-alt8 sisyphus+328444.100.1.1 1693553407 installed <13>Apr 13 07:46:35 rpmi: libfreetype-devel-2.13.2-alt1 sisyphus+328677.100.1.1 1693834346 installed <13>Apr 13 07:46:35 rpmi: libharfbuzz-devel-8.4.0-alt1 sisyphus+344161.100.1.1 1711987969 installed <13>Apr 13 07:46:35 rpmi: libpython3-3.12.2-alt1 sisyphus+341702.200.1.1 1709232959 installed <13>Apr 13 07:46:35 rpmi: python3-module-py3dephell-0.1.0-alt2 sisyphus+328191.600.5.1 1693609196 installed <13>Apr 13 07:46:35 rpmi: python3-module-pkg_resources-1:69.2.0-alt1 sisyphus+342809.100.1.1 1710522388 installed <13>Apr 13 07:46:35 rpmi: tests-for-installed-python3-pkgs-0.1.25-alt1 sisyphus+344685.100.1.1 1712595070 installed <13>Apr 13 07:46:35 rpmi: rpm-build-python3-0.1.25-alt1 sisyphus+344685.100.1.1 1712595070 installed <13>Apr 13 07:46:36 rpmi: python3-dev-3.12.2-alt1 sisyphus+341702.200.1.1 1709232959 installed <13>Apr 13 07:46:36 rpmi: librabbitmq-c4-0.14.0-alt1 sisyphus+343592.100.1.1 1711443827 installed <13>Apr 13 07:46:37 rpmi: libavformat60-2:6.1.1-alt3 sisyphus+342582.100.1.1 1710266035 installed <13>Apr 13 07:46:37 rpmi: libavfilter9-2:6.1.1-alt3 sisyphus+342582.100.1.1 1710266035 installed <13>Apr 13 07:46:37 rpmi: gst-libav-1.24.2-alt1 sisyphus+307774.700.1.1 1712734381 installed <13>Apr 13 07:46:37 rpmi: libevent2.1-2.1.12-alt1 sisyphus+324359.3500.11.1 1689364668 installed <13>Apr 13 07:46:37 rpmi: libcamera-1:0.2.0-alt1 sisyphus+338024.100.2.2 1705663848 installed <13>Apr 13 07:46:37 rpmi: libshout2-2.4.6-alt2 sisyphus+326035.1600.1.1 1690667395 installed <13>Apr 13 07:46:37 rpmi: gst-plugins-good1.0-1.24.2-alt1 sisyphus+307774.300.1.1 1712734015 installed <13>Apr 13 07:46:37 rpmi: libarchive13-3.6.1-alt2 sisyphus+324359.1300.6.1 1689326414 installed <13>Apr 13 07:46:37 rpmi: libssh2-1.11.0-alt2 sisyphus+339356.100.1.1 1706593140 installed <13>Apr 13 07:46:37 rpmi: libcurl-8.7.1-alt1 sisyphus+343696.100.2.2 1711555874 installed <13>Apr 13 07:46:37 rpmi: libwxBase3.2-3.2.4-alt1 sisyphus+334251.100.1.1 1699762228 installed <13>Apr 13 07:46:38 rpmi: libwxGTK3.2-3.2.4-alt1 sisyphus+334251.100.1.1 1699762228 installed <13>Apr 13 07:46:38 rpmi: libwxGTK3.2-gl-3.2.4-alt1 sisyphus+334251.100.1.1 1699762228 installed <13>Apr 13 07:46:38 rpmi: libwxGTK3.2-media-3.2.4-alt1 sisyphus+334251.100.1.1 1699762228 installed <13>Apr 13 07:46:38 rpmi: libwxGTK3.2-sound_sdlu-3.2.4-alt1 sisyphus+334251.100.1.1 1699762228 installed <13>Apr 13 07:46:38 rpmi: libproxy-0.5.3-alt1.2 sisyphus+335980.100.1.1 1701900058 installed <13>Apr 13 07:46:38 rpmi: glib-networking-2.80.0-alt1 sisyphus+342825.100.1.1 1710537083 installed <13>Apr 13 07:46:38 rpmi: libsoup-2.74.3-alt1.1 sisyphus+318260.100.1.1 1680994690 installed <13>Apr 13 07:46:38 rpmi: libraptor2-2.0.16-alt1 sisyphus+337177.100.1.1 1703495660 installed <13>Apr 13 07:46:38 rpmi: liblrdf-0.6.1-alt1 sisyphus+278205.100.1.1 1626077043 installed <13>Apr 13 07:46:38 rpmi: gdcm-3.0.21-alt1 sisyphus+338650.100.1.1 1705929597 installed <13>Apr 13 07:46:39 rpmi: libopencv4.8-1:4.8.1-alt1 sisyphus+333513.56300.73.1 1704651864 installed <13>Apr 13 07:46:39 rpmi: alsa-ucm-conf-1.2.10-alt2 sisyphus+337619.100.1.1 1704220124 installed <13>Apr 13 07:46:39 rpmi: alsa-topology-conf-1.2.5.1-alt1 sisyphus+274777.100.1.1 1624089141 installed <13>Apr 13 07:46:39 rpmi: libalsa-1:1.2.10-alt2 sisyphus+337619.200.1.1 1704220189 installed <13>Apr 13 07:46:40 rpmi: flite-2.2-alt2 sisyphus+329889.100.1.1 1695115202 installed <13>Apr 13 07:46:40 rpmi: libcanberra-0.30-alt3 sisyphus+275093.100.2.3 1624562354 installed <13>Apr 13 07:46:40 rpmi: pipewire-libs-1.0.4-alt1 sisyphus+342641.100.1.1 1710338203 installed <13>Apr 13 07:46:40 rpmi: pipewire-jack-libs-1.0.4-alt1 sisyphus+342641.100.1.1 1710338203 installed <13>Apr 13 07:46:40 rpmi: libfluidsynth-2.3.5-alt1 sisyphus+343857.100.1.2 1711645372 installed <13>Apr 13 07:46:40 rpmi: libSDL-1.2.14-alt10 sisyphus+284852.100.1.1 1631107844 installed <13>Apr 13 07:46:40 rpmi: libmjpegtools2.1-2.2.1-alt2 sisyphus+332812.400.2.1 1698405792 installed <13>Apr 13 07:46:41 rpmi: gst-plugins-bad1.0-1.24.2-alt1 sisyphus+307774.400.1.1 1712734219 installed <13>Apr 13 07:46:41 rpmi: gst-plugins-base1.0-1.24.2-alt1 sisyphus+307774.200.1.1 1712733863 installed <13>Apr 13 07:46:44 rpmi: libwebkit2gtk-2.44.1-alt1 sisyphus+344767.100.1.3 1712687441 installed <13>Apr 13 07:46:44 rpmi: libwxGTK3.2-webview-3.2.4-alt1 sisyphus+334251.100.1.1 1699762228 installed <13>Apr 13 07:46:44 rpmi: libwxBase3.2-devel-3.2.4-alt1 sisyphus+334251.100.1.1 1699762228 installed <13>Apr 13 07:46:44 rpmi: libwxGTK3.2-devel-3.2.4-alt1 sisyphus+334251.100.1.1 1699762228 installed <13>Apr 13 07:46:45 rpmi: cmake-3.29.1-alt1 sisyphus+344518.200.3.1 1712379679 installed <13>Apr 13 07:46:45 rpmi: python3-module-setuptools-1:69.2.0-alt1 sisyphus+342809.100.1.1 1710522388 installed <13>Apr 13 07:46:45 rpmi: boost-filesystem-devel-1:1.84.0-alt3 sisyphus+340550.100.1.1 1707802751 installed <13>Apr 13 07:46:45 rpmi: gcc-c++-13-alt1 sisyphus+323337.300.1.1 1687268227 installed <13>Apr 13 07:46:45 rpmi: swig-1:4.1.1-alt8 sisyphus+339194.200.2.1 1706440433 installed <13>Apr 13 07:46:45 rpmi: rapidjson-devel-1.1.0-alt8.git473553bd sisyphus+331050.100.2.2 1696521949 installed <13>Apr 13 07:46:45 rpmi: libxml2-devel-1:2.12.5-alt1 sisyphus+342268.100.2.1 1710156418 installed <13>Apr 13 07:46:45 rpmi: eigen3-3.4.0-alt2.1 sisyphus+340675.200.1.1 1707908250 installed Building target platforms: i586 Building for target i586 Wrote: /usr/src/in/nosrpm/openbabel-3.1.1-alt4.1.nosrc.rpm (w1.gzdio) Installing openbabel-3.1.1-alt4.1.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.26158 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf openbabel-3.1.1 + echo 'Source #0 (openbabel-3.1.1.tar):' Source #0 (openbabel-3.1.1.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/openbabel-3.1.1.tar + cd openbabel-3.1.1 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #0 (openbabel-3.1.1-alt4.1.patch):' Patch #0 (openbabel-3.1.1-alt4.1.patch): + /usr/bin/patch -p1 patching file .gear/rules patching file .gear/tags/2806ab0ef7445a427f7cc4706455d7988262adcc patching file .gear/tags/list patching file .github/config.yml patching file .github/workflows/build_cmake.yml patching file .github/workflows/misspell-fixer.yml patching file CMakeLists.txt patching file OpenBabel3Config.cmake.in patching file OpenBabel3ConfigVersion.cmake.in patching file cmake/modules/Findcoordgen.cmake patching file data/CMakeLists.txt patching file data/atomtyp.h patching file data/bondtyp.h patching file data/genheaders.sh patching file data/logp.txt patching file data/phmodeldata.h patching file data/resdata.h patching file data/splash.png patching file data/torlib.h patching file data/types.h patching file doc/examples/obconformersearch_default.cpp patching file doc/images/SPshapes.png patching file doc/images/cistrans.png patching file doc/images/energyconformerscore.png patching file doc/images/getcisref.png patching file doc/images/gettransref.png patching file doc/images/rmsdconformerscore.png patching file doc/images/spectrophore_cage.png patching file doc/images/squareplanar.png patching file doc/images/tetrahedral.png patching file doc/images/tetranonplanar.png patching file doc/images/tetraplanar.png patching file doc/splash.png patching file include/openbabel/conformersearch.h patching file include/openbabel/forcefield.h patching file include/openbabel/generic.h patching file include/openbabel/mol.h patching file include/openbabel/obutil.h patching file include/openbabel/residue.h patching file include/openbabel/rotor.h patching file include/openbabel/spectrophore.h patching file include/openbabel/stereo/stereo.h patching file include/openbabel/stereo/tetraplanar.h patching file include/openbabel/typer.h patching file openbabel.spec patching file openbabel.watch patching file scripts/CMakeLists.txt patching file scripts/openbabel-R.i patching file scripts/openbabel-csharp.i patching file scripts/openbabel-java.i patching file scripts/openbabel-mono.i patching file scripts/openbabel-perl.i patching file scripts/openbabel-php.i patching file scripts/openbabel-python.i patching file scripts/openbabel-ruby.i patching file scripts/python/openbabel/pybel.py patching file scripts/python/setup.py patching file src/CMakeLists.txt patching file src/conformersearch.cpp patching file src/data.cpp patching file src/doxygen_pages.cpp patching file src/fingerprints/finger3.cpp patching file src/forcefields/forcefielduff.cpp patching file src/formats/MCDLformat.cpp patching file src/formats/cifformat.cpp patching file src/formats/copyformat.cpp patching file src/formats/fastsearchformat.cpp patching file src/formats/fingerprintformat.cpp patching file src/formats/gaussformat.cpp patching file src/formats/getinchi.cpp patching file src/formats/pngformat.cpp patching file src/formats/smilesformat.cpp patching file src/formats/svgformat.cpp patching file src/formats/textformat.cpp patching file src/formats/xtcformat.cpp patching file src/formats/yasaraformat.cpp patching file src/kekulize.cpp patching file src/math/spacegroup.cpp patching file src/mcdlutil.cpp patching file src/mol.cpp patching file src/obiter.cpp patching file src/obmolecformat.cpp patching file src/ops/conformer.cpp patching file src/parsmart.cpp patching file src/residue.cpp patching file src/spectrophore.cpp patching file src/tautomer.cpp patching file src/typer.cpp patching file test/CMakeLists.txt patching file test/cifspacegrouptest.cpp patching file test/files/alias.png patching file test/files/aromatics.png patching file test/fuzz/fuzz_obconversion.cpp patching file test/iterators.cpp patching file test/residue.cpp patching file test/smartstest.cpp patching file test/testbindings.py patching file test/testdistgeom.py patching file tools/obrms.cpp patching file tools/obthermo.cpp + sed -i 's/dist\(-packages\)/site\1/' scripts/CMakeLists.txt + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.26158 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd openbabel-3.1.1 + mkdir -p i586-alt-linux + cmake -DCMAKE_SKIP_INSTALL_RPATH:BOOL=yes '-DCMAKE_C_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic' '-DCMAKE_CXX_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic' '-DCMAKE_Fortran_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic' -DCMAKE_INSTALL_PREFIX=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_DESTINATION=lib -DLIB_SUFFIX= -S . -B i586-alt-linux -DWITH_MAEPARSER:BOOL=OFF -DWITH_COORDGEN:BOOL=OFF -DBUILD_GUI:BOOL=ON -DRUN_SWIG=ON -DPYTHON_BINDINGS:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.2.1 -- The CXX compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Using included inchi library. Package liblzma was not found in the pkg-config search path. Perhaps you should add the directory containing `liblzma.pc' to the PKG_CONFIG_PATH environment variable Package 'liblzma', required by 'libxml-2.0', not found Package liblzma was not found in the pkg-config search path. Perhaps you should add the directory containing `liblzma.pc' to the PKG_CONFIG_PATH environment variable Package 'liblzma', required by 'libxml-2.0', not found Package liblzma was not found in the pkg-config search path. Perhaps you should add the directory containing `liblzma.pc' to the PKG_CONFIG_PATH environment variable Package 'liblzma', required by 'libxml-2.0', not found Package liblzma was not found in the pkg-config search path. Perhaps you should add the directory containing `liblzma.pc' to the PKG_CONFIG_PATH environment variable Package 'liblzma', required by 'libxml-2.0', not found -- Found LibXml2: /usr/lib/libxml2.so (found version "2.12.5") -- Found ZLIB: /usr/lib/libz.so (found version "1.3.1") -- Found wxWidgets: -pthread;;;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.4") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success CMake Warning (dev) at CMakeLists.txt:299 (exec_program): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success -- Use std::shared_ptr in memory -- Could NOT find Boost: missing: program_options (found /usr/lib/cmake/Boost-1.84.0/BoostConfig.cmake (found version "1.84.0")) -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found Boost: /usr/lib/cmake/Boost-1.84.0/BoostConfig.cmake (found version "1.84.0") found components: filesystem iostreams unit_test_framework -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include -- Checking for module 'cairo' -- Found cairo, version 1.18.0 Package bzip2 was not found in the pkg-config search path. Perhaps you should add the directory containing `bzip2.pc' to the PKG_CONFIG_PATH environment variable Package 'bzip2', required by 'freetype2', not found Package bzip2 was not found in the pkg-config search path. Perhaps you should add the directory containing `bzip2.pc' to the PKG_CONFIG_PATH environment variable Package 'bzip2', required by 'freetype2', not found Package bzip2 was not found in the pkg-config search path. Perhaps you should add the directory containing `bzip2.pc' to the PKG_CONFIG_PATH environment variable Package 'bzip2', required by 'freetype2', not found Package bzip2 was not found in the pkg-config search path. Perhaps you should add the directory containing `bzip2.pc' to the PKG_CONFIG_PATH environment variable Package 'bzip2', required by 'freetype2', not found -- Found Cairo: /usr/lib/libcairo.so -- Cairo found. PNG output will be supported. -- Found Boost: /usr/lib/cmake/Boost-1.84.0/BoostConfig.cmake (found suitable version "1.84.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Could NOT find Boost: missing: program_options (found /usr/lib/cmake/Boost-1.84.0/BoostConfig.cmake (found version "1.84.0")) -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built Problem opening /proc/meminfo CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): test/CMakeLists.txt:226 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found version "3.12.2") CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): test/CMakeLists.txt:250 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found SWIG: /usr/bin/swig (found version "4.1.1") -- Found SWIG: /usr/bin/swig (found suitable version "4.1.1", minimum required is "2.0") CMake Warning (dev) at scripts/CMakeLists.txt:45 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at scripts/CMakeLists.txt:54 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonLibs: /usr/lib/libpython3.12.so (found version "3.12.2") -- Python bindings will be compiled -- Configuring done (5.4s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS INCLUDE_INSTALL_DIR LIB_DESTINATION SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux + cmake --build i586-alt-linux --verbose --parallel 8 Change Dir: '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j8 gmake: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/cmake -S/usr/src/RPM/BUILD/openbabel-3.1.1 -B/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux --check-build-system CMakeFiles/Makefile.cmake 0 gmake: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/cmake -E cmake_progress_start /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/CMakeFiles /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux//CMakeFiles/progress.marks gmake: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f CMakeFiles/Makefile2 all /usr/bin/gmake -f data/CMakeFiles/data_headers.dir/build.make data/CMakeFiles/data_headers.dir/depend /usr/bin/gmake -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/data /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data/CMakeFiles/data_headers.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f data/CMakeFiles/data_headers.dir/build.make data/CMakeFiles/data_headers.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 0%] Generating phmodeldata.h cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data && /usr/src/RPM/BUILD/openbabel-3.1.1/data/bin2hex.pl /usr/src/RPM/BUILD/openbabel-3.1.1/data/phmodel.txt PhModelData PhModelData > phmodeldata.h gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 0%] Generating atomtyp.h cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data && /usr/src/RPM/BUILD/openbabel-3.1.1/data/bin2hex.pl /usr/src/RPM/BUILD/openbabel-3.1.1/data/atomtyp.txt AtomTypeData AtomTypeData > atomtyp.h gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 0%] Generating bondtyp.h cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data && /usr/src/RPM/BUILD/openbabel-3.1.1/data/bin2hex.pl /usr/src/RPM/BUILD/openbabel-3.1.1/data/bondtyp.txt BondTypeData BondTypeData > bondtyp.h gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 1%] Generating torlib.h cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data && /usr/src/RPM/BUILD/openbabel-3.1.1/data/bin2hex.pl /usr/src/RPM/BUILD/openbabel-3.1.1/data/torlib.txt TorsionDefaults TorsionDefaults > torlib.h gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 1%] Generating resdata.h cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data && /usr/src/RPM/BUILD/openbabel-3.1.1/data/bin2hex.pl /usr/src/RPM/BUILD/openbabel-3.1.1/data/resdata.txt ResidueData ResidueData > resdata.h gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 1%] Generating types.h cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data && /usr/src/RPM/BUILD/openbabel-3.1.1/data/bin2hex.pl /usr/src/RPM/BUILD/openbabel-3.1.1/data/types.txt TypesData TypesData > types.h gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.c.o -MF CMakeFiles/inchi.dir/ichi_io.c.o.d -o CMakeFiles/inchi.dir/ichi_io.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichi_io.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 1%] Generating ringtyp.h cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data && /usr/src/RPM/BUILD/openbabel-3.1.1/data/bin2hex.pl /usr/src/RPM/BUILD/openbabel-3.1.1/data/ringtyp.txt RingTypeData RingTypeData > ringtyp.h gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.c.o -MF CMakeFiles/inchi.dir/ichicano.c.o.d -o CMakeFiles/inchi.dir/ichicano.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichicano.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.c.o -MF CMakeFiles/inchi.dir/ichiisot.c.o.d -o CMakeFiles/inchi.dir/ichiisot.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichiisot.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.c.o -MF CMakeFiles/inchi.dir/ichican2.c.o.d -o CMakeFiles/inchi.dir/ichican2.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichican2.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.c.o -MF CMakeFiles/inchi.dir/ichicans.c.o.d -o CMakeFiles/inchi.dir/ichicans.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichicans.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.c.o -MF CMakeFiles/inchi.dir/ichimap1.c.o.d -o CMakeFiles/inchi.dir/ichimap1.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichimap1.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.c.o -MF CMakeFiles/inchi.dir/ichilnct.c.o.d -o CMakeFiles/inchi.dir/ichilnct.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichilnct.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.c.o -MF CMakeFiles/inchi.dir/ichimak2.c.o.d -o CMakeFiles/inchi.dir/ichimak2.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichimak2.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.c.o -MF CMakeFiles/inchi.dir/ichimap4.c.o.d -o CMakeFiles/inchi.dir/ichimap4.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichimap4.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.c.o -MF CMakeFiles/inchi.dir/ichiparm.c.o.d -o CMakeFiles/inchi.dir/ichiparm.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichiparm.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.c.o -MF CMakeFiles/inchi.dir/ichinorm.c.o.d -o CMakeFiles/inchi.dir/ichinorm.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichinorm.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.c.o -MF CMakeFiles/inchi.dir/ichi_bns.c.o.d -o CMakeFiles/inchi.dir/ichi_bns.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichi_bns.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.c.o -MF CMakeFiles/inchi.dir/ichimake.c.o.d -o CMakeFiles/inchi.dir/ichimake.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichimake.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 1%] Generating spacegroups.h cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data && /usr/src/RPM/BUILD/openbabel-3.1.1/data/bin2hex.pl /usr/src/RPM/BUILD/openbabel-3.1.1/data/space-groups.txt SpaceGroupsData SpaceGroupsData > spacegroups.h gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.c.o -MF CMakeFiles/inchi.dir/ichimap2.c.o.d -o CMakeFiles/inchi.dir/ichimap2.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichimap2.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.c.o -MF CMakeFiles/inchi.dir/ichiprt1.c.o.d -o CMakeFiles/inchi.dir/ichiprt1.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichiprt1.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.c.o -MF CMakeFiles/inchi.dir/ichiprt2.c.o.d -o CMakeFiles/inchi.dir/ichiprt2.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichiprt2.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.c.o -MF CMakeFiles/inchi.dir/ichiqueu.c.o.d -o CMakeFiles/inchi.dir/ichiqueu.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichiqueu.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.c.o -MF CMakeFiles/inchi.dir/ichiring.c.o.d -o CMakeFiles/inchi.dir/ichiring.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichiring.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.c.o -MF CMakeFiles/inchi.dir/ichiprt3.c.o.d -o CMakeFiles/inchi.dir/ichiprt3.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichiprt3.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.c.o -MF CMakeFiles/inchi.dir/ichirvr5.c.o.d -o CMakeFiles/inchi.dir/ichirvr5.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichirvr5.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.c.o -MF CMakeFiles/inchi.dir/ichirvr6.c.o.d -o CMakeFiles/inchi.dir/ichirvr6.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichirvr6.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.c.o -MF CMakeFiles/inchi.dir/ichirvr1.c.o.d -o CMakeFiles/inchi.dir/ichirvr1.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichirvr1.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr4.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr4.c.o -MF CMakeFiles/inchi.dir/ichirvr4.c.o.d -o CMakeFiles/inchi.dir/ichirvr4.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichirvr4.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr2.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr2.c.o -MF CMakeFiles/inchi.dir/ichirvr2.c.o.d -o CMakeFiles/inchi.dir/ichirvr2.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichirvr2.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichisort.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichisort.c.o -MF CMakeFiles/inchi.dir/ichisort.c.o.d -o CMakeFiles/inchi.dir/ichisort.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichisort.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.c.o -MF CMakeFiles/inchi.dir/ichiread.c.o.d -o CMakeFiles/inchi.dir/ichiread.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichiread.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.c.o -MF CMakeFiles/inchi.dir/ichirvr7.c.o.d -o CMakeFiles/inchi.dir/ichirvr7.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichirvr7.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.c.o -MF CMakeFiles/inchi.dir/ichirvr3.c.o.d -o CMakeFiles/inchi.dir/ichirvr3.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichirvr3.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.c.o -MF CMakeFiles/inchi.dir/ikey_dll.c.o.d -o CMakeFiles/inchi.dir/ikey_dll.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ikey_dll.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.c.o -MF CMakeFiles/inchi.dir/ikey_base26.c.o.d -o CMakeFiles/inchi.dir/ikey_base26.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ikey_base26.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichister.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichister.c.o -MF CMakeFiles/inchi.dir/ichister.c.o.d -o CMakeFiles/inchi.dir/ichister.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichister.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.c.o -MF CMakeFiles/inchi.dir/inchi_dll_main.c.o.d -o CMakeFiles/inchi.dir/inchi_dll_main.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/inchi_dll_main.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.c.o -MF CMakeFiles/inchi.dir/inchi_dll.c.o.d -o CMakeFiles/inchi.dir/inchi_dll.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/inchi_dll.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.c.o -MF CMakeFiles/inchi.dir/ichitaut.c.o.d -o CMakeFiles/inchi.dir/ichitaut.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichitaut.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/sha2.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/sha2.c.o -MF CMakeFiles/inchi.dir/sha2.c.o.d -o CMakeFiles/inchi.dir/sha2.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/sha2.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/runichi.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/runichi.c.o -MF CMakeFiles/inchi.dir/runichi.c.o.d -o CMakeFiles/inchi.dir/runichi.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/runichi.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.c.o -MF CMakeFiles/inchi.dir/inchi_dll_a.c.o.d -o CMakeFiles/inchi.dir/inchi_dll_a.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/inchi_dll_a.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/util.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/util.c.o -MF CMakeFiles/inchi.dir/util.c.o.d -o CMakeFiles/inchi.dir/util.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/util.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a2.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a2.c.o -MF CMakeFiles/inchi.dir/inchi_dll_a2.c.o.d -o CMakeFiles/inchi.dir/inchi_dll_a2.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/inchi_dll_a2.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/strutil.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/strutil.c.o -MF CMakeFiles/inchi.dir/strutil.c.o.d -o CMakeFiles/inchi.dir/strutil.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/strutil.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 1%] Generating atomizationenergies.h cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data && /usr/src/RPM/BUILD/openbabel-3.1.1/data/bin2hex.pl /usr/src/RPM/BUILD/openbabel-3.1.1/data/atomization-energies.txt AtomicHeatOfFormationData AtomicHeatOfFormationData > atomizationenergies.h gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 8%] Built target data_headers gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/CMakeFiles/openbabel.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/alias.cpp.o -MF CMakeFiles/openbabel.dir/alias.cpp.o.d -o CMakeFiles/openbabel.dir/alias.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/alias.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/alias.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/alias.cpp:16: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/atom.cpp.o -MF CMakeFiles/openbabel.dir/atom.cpp.o.d -o CMakeFiles/openbabel.dir/atom.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/atom.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/base.cpp.o -MF CMakeFiles/openbabel.dir/base.cpp.o.d -o CMakeFiles/openbabel.dir/base.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/base.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bitvec.cpp.o -MF CMakeFiles/openbabel.dir/bitvec.cpp.o.d -o CMakeFiles/openbabel.dir/bitvec.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/bitvec.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bond.cpp.o -MF CMakeFiles/openbabel.dir/bond.cpp.o.d -o CMakeFiles/openbabel.dir/bond.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/bond.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -MF CMakeFiles/openbabel.dir/bondtyper.cpp.o.d -o CMakeFiles/openbabel.dir/bondtyper.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/bondtyper.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 8%] Linking C shared library ../../../lib/libinchi.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchi.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,libinchi.so.0 -o ../../../lib/libinchi.so.0.4.1 CMakeFiles/inchi.dir/ichi_bns.c.o CMakeFiles/inchi.dir/ichi_io.c.o CMakeFiles/inchi.dir/ichican2.c.o CMakeFiles/inchi.dir/ichicano.c.o CMakeFiles/inchi.dir/ichicans.c.o CMakeFiles/inchi.dir/ichiisot.c.o CMakeFiles/inchi.dir/ichilnct.c.o CMakeFiles/inchi.dir/ichimak2.c.o CMakeFiles/inchi.dir/ichimake.c.o CMakeFiles/inchi.dir/ichimap1.c.o CMakeFiles/inchi.dir/ichimap2.c.o CMakeFiles/inchi.dir/ichimap4.c.o CMakeFiles/inchi.dir/ichinorm.c.o CMakeFiles/inchi.dir/ichiparm.c.o CMakeFiles/inchi.dir/ichiprt1.c.o CMakeFiles/inchi.dir/ichiprt2.c.o CMakeFiles/inchi.dir/ichiprt3.c.o CMakeFiles/inchi.dir/ichiqueu.c.o CMakeFiles/inchi.dir/ichiread.c.o CMakeFiles/inchi.dir/ichiring.c.o CMakeFiles/inchi.dir/ichirvr1.c.o CMakeFiles/inchi.dir/ichirvr2.c.o CMakeFiles/inchi.dir/ichirvr3.c.o CMakeFiles/inchi.dir/ichirvr4.c.o CMakeFiles/inchi.dir/ichirvr5.c.o CMakeFiles/inchi.dir/ichirvr6.c.o CMakeFiles/inchi.dir/ichirvr7.c.o CMakeFiles/inchi.dir/ichisort.c.o CMakeFiles/inchi.dir/ichister.c.o CMakeFiles/inchi.dir/ichitaut.c.o CMakeFiles/inchi.dir/ikey_base26.c.o CMakeFiles/inchi.dir/ikey_dll.c.o CMakeFiles/inchi.dir/inchi_dll.c.o CMakeFiles/inchi.dir/inchi_dll_a.c.o CMakeFiles/inchi.dir/inchi_dll_a2.c.o CMakeFiles/inchi.dir/inchi_dll_main.c.o CMakeFiles/inchi.dir/runichi.c.o CMakeFiles/inchi.dir/sha2.c.o CMakeFiles/inchi.dir/strutil.c.o CMakeFiles/inchi.dir/util.c.o -lm -ldl -lz -lcairo -lc -lm cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libinchi.so.0.4.1 ../../../lib/libinchi.so.0 ../../../lib/libinchi.so gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 11%] Built target inchi gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chargemodel.cpp.o -MF CMakeFiles/openbabel.dir/chargemodel.cpp.o.d -o CMakeFiles/openbabel.dir/chargemodel.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/chargemodel.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/chargemodel.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/elements.cpp.o -MF CMakeFiles/openbabel.dir/elements.cpp.o.d -o CMakeFiles/openbabel.dir/elements.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/elements.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data_utilities.cpp.o -MF CMakeFiles/openbabel.dir/data_utilities.cpp.o.d -o CMakeFiles/openbabel.dir/data_utilities.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/data_utilities.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/descriptor.cpp.o -MF CMakeFiles/openbabel.dir/descriptor.cpp.o.d -o CMakeFiles/openbabel.dir/descriptor.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptor.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptor.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptor.cpp:20: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chains.cpp.o -MF CMakeFiles/openbabel.dir/chains.cpp.o.d -o CMakeFiles/openbabel.dir/chains.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/chains.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -MF CMakeFiles/openbabel.dir/fingerprint.cpp.o.d -o CMakeFiles/openbabel.dir/fingerprint.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprint.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprint.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprint.cpp:21: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/format.cpp.o -MF CMakeFiles/openbabel.dir/format.cpp.o.d -o CMakeFiles/openbabel.dir/format.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/format.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/format.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/canon.cpp.o -MF CMakeFiles/openbabel.dir/canon.cpp.o.d -o CMakeFiles/openbabel.dir/canon.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/canon.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF CMakeFiles/openbabel.dir/builder.cpp.o.d -o CMakeFiles/openbabel.dir/builder.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/builder.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/builder.cpp:31: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/builder.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/builder.cpp:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/grid.cpp.o -MF CMakeFiles/openbabel.dir/grid.cpp.o.d -o CMakeFiles/openbabel.dir/grid.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/grid.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/grid.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:55:18: warning: 'virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)' was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:123:10: note: by 'void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)' 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data.cpp.o -MF CMakeFiles/openbabel.dir/data.cpp.o.d -o CMakeFiles/openbabel.dir/data.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/data.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/locale.cpp.o -MF CMakeFiles/openbabel.dir/locale.cpp.o.d -o CMakeFiles/openbabel.dir/locale.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/locale.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/matrix.cpp.o -MF CMakeFiles/openbabel.dir/matrix.cpp.o.d -o CMakeFiles/openbabel.dir/matrix.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/matrix.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/isomorphism.cpp.o -MF CMakeFiles/openbabel.dir/isomorphism.cpp.o.d -o CMakeFiles/openbabel.dir/isomorphism.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/isomorphism.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/isomorphism.cpp: In member function 'void OpenBabel::VF2Mapper::MapNext(State&, OpenBabel::OBQueryAtom*, OpenBabel::OBAtom*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/isomorphism.cpp:317:41: warning: comparison of integer expressions of different signedness: 'time_t' {aka 'long int'} and 'unsigned int' [-Wsign-compare] 317 | if (time(nullptr) - m_startTime > m_timeout) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/isomorphism.cpp: In member function 'virtual void OpenBabel::VF2Mapper::MapGeneric(OpenBabel::OBIsomorphismMapper::Functor&, const OpenBabel::OBMol*, const OpenBabel::OBBitVec&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/isomorphism.cpp:501:41: warning: comparison of integer expressions of different signedness: 'time_t' {aka 'long int'} and 'unsigned int' [-Wsign-compare] 501 | if (time(nullptr) - m_startTime > m_timeout) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/griddata.cpp.o -MF CMakeFiles/openbabel.dir/griddata.cpp.o.d -o CMakeFiles/openbabel.dir/griddata.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/griddata.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/generic.h:31, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/griddata.cpp:25: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:228:32: warning: 'virtual const std::string& OpenBabel::OBGenericData::GetValue() const' was hidden [-Woverloaded-virtual=] 228 | virtual const std::string &GetValue() const | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:76:12: note: by 'OpenBabel::OBGridData::GetValue' 76 | double GetValue (vector3 pos) const; | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/griddata.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:55:18: warning: 'virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)' was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:123:10: note: by 'void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)' 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/kekulize.cpp.o -MF CMakeFiles/openbabel.dir/kekulize.cpp.o.d -o CMakeFiles/openbabel.dir/kekulize.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/kekulize.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/kekulize.cpp: In function 'bool OpenBabel::NeedsDoubleBond(OBAtom*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/kekulize.cpp:94:15: warning: unused variable 'nbr' [-Wunused-variable] 94 | OBAtom *nbr = bond->GetNbrAtom(atom); | ^~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/graphsym.cpp.o -MF CMakeFiles/openbabel.dir/graphsym.cpp.o.d -o CMakeFiles/openbabel.dir/graphsym.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/graphsym.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/oberror.cpp.o -MF CMakeFiles/openbabel.dir/oberror.cpp.o.d -o CMakeFiles/openbabel.dir/oberror.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/oberror.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/generic.cpp.o -MF CMakeFiles/openbabel.dir/generic.cpp.o.d -o CMakeFiles/openbabel.dir/generic.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/generic.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/forcefield.cpp.o -MF CMakeFiles/openbabel.dir/forcefield.cpp.o.d -o CMakeFiles/openbabel.dir/forcefield.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/set:62, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:34: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:55:18: warning: 'virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)' was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:123:10: note: by 'void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)' 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:26: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:228:32: warning: 'virtual const std::string& OpenBabel::OBGenericData::GetValue() const' was hidden [-Woverloaded-virtual=] 228 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:35: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:76:12: note: by 'OpenBabel::OBGridData::GetValue' 76 | double GetValue (vector3 pos) const; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:391:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 391 | if (_ignoreAtom == a) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:393:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 393 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:403:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 403 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:413:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 413 | if (_ignoreAtom == d) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintType(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:665:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 665 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'double OpenBabel::OBFFConstraints::GetConstraintValue(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:673:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 673 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:681:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 681 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:689:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 689 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:697:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 697 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:705:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 705 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBForceField::FastRotorSearch(bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1353:34: warning: array subscript has type 'char' [-Wchar-subscripts] 1353 | num_permutations = factorial[num_rotors_to_permute]; | ^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1357:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 1357 | for (int i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 1370 | for (int i=0; i >&, std::vector, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1571:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 1571 | if (j == rotorKey[i]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1590:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 1590 | if (j == rotorKey[i]) gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obfunctions.cpp.o -MF CMakeFiles/openbabel.dir/obfunctions.cpp.o.d -o CMakeFiles/openbabel.dir/obfunctions.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obfunctions.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/molchrg.cpp.o -MF CMakeFiles/openbabel.dir/molchrg.cpp.o.d -o CMakeFiles/openbabel.dir/molchrg.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/molchrg.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/op.cpp.o -MF CMakeFiles/openbabel.dir/op.cpp.o.d -o CMakeFiles/openbabel.dir/op.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/op.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/op.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obutil.cpp.o -MF CMakeFiles/openbabel.dir/obutil.cpp.o.d -o CMakeFiles/openbabel.dir/obutil.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obutil.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/patty.cpp.o -MF CMakeFiles/openbabel.dir/patty.cpp.o.d -o CMakeFiles/openbabel.dir/patty.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/patty.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o CMakeFiles/openbabel.dir/obconversion.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp:48: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/phmodel.cpp.o -MF CMakeFiles/openbabel.dir/phmodel.cpp.o.d -o CMakeFiles/openbabel.dir/phmodel.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/phmodel.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/plugin.cpp.o -MF CMakeFiles/openbabel.dir/plugin.cpp.o.d -o CMakeFiles/openbabel.dir/plugin.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/plugin.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/plugin.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obiter.cpp.o -MF CMakeFiles/openbabel.dir/obiter.cpp.o.d -o CMakeFiles/openbabel.dir/obiter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder] 375 | OBMol *_parent; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder] 374 | OBRing *_ptr; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp:1022:3: warning: when initialized here [-Wreorder] 1022 | OBMolRingIter::OBMolRingIter(OBMol *mol): _parent(mol), _ptr(nullptr) | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder] 375 | OBMol *_parent; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder] 374 | OBRing *_ptr; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp:1032:3: warning: when initialized here [-Wreorder] 1032 | OBMolRingIter::OBMolRingIter(OBMol &mol): _parent(&mol), _ptr(nullptr) | ^~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rand.cpp.o -MF CMakeFiles/openbabel.dir/rand.cpp.o.d -o CMakeFiles/openbabel.dir/rand.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/rand.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/rand.cpp:428:15: warning: 'void OpenBabel::GenerateSequence(unsigned int, unsigned int, unsigned int, unsigned int)' defined but not used [-Wunused-function] 428 | static void GenerateSequence( unsigned int p, unsigned int m, | ^~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/query.cpp.o -MF CMakeFiles/openbabel.dir/query.cpp.o.d -o CMakeFiles/openbabel.dir/query.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/query.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/query.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/bond.h:31, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/query.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/query.cpp:25: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/parsmart.cpp.o -MF CMakeFiles/openbabel.dir/parsmart.cpp.o.d -o CMakeFiles/openbabel.dir/parsmart.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp: In function 'int OpenBabel::CreateAtom(Pattern*, AtomExpr*, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp:446:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] 446 | int index,size; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp: In function 'int OpenBabel::CreateBond(Pattern*, BondExpr*, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp:478:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] 478 | int index,size; | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:423:5: warning: multi-line comment [-Wcomment] 423 | // / \ | ^ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TSimpleMolecule::threeBondResolve(int, int, double&, double&, OpenBabel::neighbourlist*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:968:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 968 | for (i=0; i&, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:1471:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 1471 | for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 1478 | } while (k&, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2009:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 2009 | for (j=0; j0) atDef=atDef+1; | ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2019:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 2019 | if (cN>=0) if (maxAtDef==atomCycle[cN].size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2034:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 2034 | for (j=1; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 2040 | for (j=0;currNumDef < atomClean && j&, std::vector, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2107:98: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 2107 | if (baseCycle>0) for (i=0; i, std::vector, int, int&, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2238:67: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 2238 | for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 2240 | for (k=0; k::size_type' {aka 'unsigned int'} [-Wsign-compare] 2264 | for (j=1; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 2575 | if ((nb + i) > dsATN.size()) nb=dsATN.size()-i; // Check added to avoid segfault below, see issue #1851 | ~~~~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::flipSmall(int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2985:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 2985 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 3024 | for (i=0; i, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3103 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3103:75: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3103 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3105:26: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3105 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3105:75: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3105 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'bool OpenBabel::compareAtoms(int, int, std::vector*>)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3127:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*>::size_type' {aka 'unsigned int'} [-Wsign-compare] 3127 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3127:63: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*>::size_type' {aka 'unsigned int'} [-Wsign-compare] 3127 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::makeEquivalentList(std::vector&, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3291:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 3291 | for (j=0; jsize(); j++) (*lL)[i]=0; | ~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3299:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 3299 | for (i=0; i*>::size_type' {aka 'unsigned int'} [-Wsign-compare] 3309 | for (int i=0; i&, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3325:13: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const __gnu_cxx::__alloc_traits, int>::value_type' {aka 'const int'} [-Wsign-compare] 3325 | if (l <= maxValues[i]) { /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'int OpenBabel::TSimpleMolecule::correctOverlapped()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3374:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 3374 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 3427 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 3437 | for (i=0; i*, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3540:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 3540 | for (i=0; isize(); i++) if (i != index) { | ~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4216:19: warning: variable 'nBondsOld' set but not used [-Wunused-but-set-variable] 4216 | int nAtomsOld,nBondsOld,naDef1,naDef,i; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4217:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4217:15: warning: variable 'test1' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4217:21: warning: variable 'test2' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4219:40: warning: variable 'xCenter' set but not used [-Wunused-but-set-variable] 4219 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4219:48: warning: variable 'yCenter' set but not used [-Wunused-but-set-variable] 4219 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'OpenBabel::TEditedMolecule* OpenBabel::TEditedMolecule::extractFragment(int, std::vector*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4410:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4410 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4410:71: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4410 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4415:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4415 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 4418 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 4591 | for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 4596 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 4601 | for (i=0; i*, std::vector*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4636:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 4636 | if (qEnumerator->size() != nAtoms()) qEnumerator->resize(nAtoms()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4637:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4637 | for (i=0; isize(); i++) (*qEnumerator)[i]=i; | ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4666:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4666 | for (j=0; jsize(); j++) { | ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TEditedMolecule::fragmentSearch(OpenBabel::TEditedMolecule*, std::vector*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4853:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4853 | if (molecule1->listarSize()>aSTested.size()) aSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4854:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4854 | if (molecule1->listarSize()>bSTested.size()) bSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4855:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4855 | if (molecule1->listarSize()>queryQHydr.size()) queryQHydr.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4856:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4856 | if (molecule1->listarSize()>queryAQTested.size()) queryAQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4857:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4857 | if (molecule1->listarSize()>queryBQTested.size()) queryBQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4858:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4858 | if (molecule1->listarSize()>queryCurrentAssignment.size()) queryCurrentAssignment.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4859:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4859 | if (this->listarSize()>queryAQTested.size()) queryAQTested.resize(this->listarSize()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5032:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; | ^ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4840:9: warning: variable 'cycleNumber' set but not used [-Wunused-but-set-variable] 4840 | int cycleNumber; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TemplateRedraw::internalBondsPresent(OpenBabel::TEditedMolecule*, OpenBabel::TSimpleMolecule*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5201:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 5201 | for (i=0; inAtoms(); i++) aList[mQuery->queryAQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5202:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 5202 | for (i=0; inBonds(); i++) bList[mQuery->queryBQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TemplateRedraw::rotateBondVertically(OpenBabel::TSimpleMolecule*, std::vector, int, double, double, double&, double&, double&, double&, double&, double&, int&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5232:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5232 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5277 | for (i=0; i*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5311:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5311 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5328:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5328 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5358 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5368 | for (i=0; i*, OpenBabel::PartFragmentDefinition&, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5399:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5399 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5412:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5412 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5428:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5428 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'int OpenBabel::TemplateRedraw::coordinatesPrepare(OpenBabel::TEditedMolecule&, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5667:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5667 | for (i=kk; ifragmentSearch(&sm,nullptr)) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5715:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5715 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5718 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5726 | for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 5798 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5828 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5894 | for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 5906 | for (frCount=0; frCount::size_type' {aka 'unsigned int'} [-Wsign-compare] 5922 | for (frCount=0; frCount::size_type' {aka 'unsigned int'} [-Wsign-compare] 5945 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5960 | for (frCount=0; frCount::size_type' {aka 'unsigned int'} [-Wsign-compare] 6000 | for (i=0;i::size_type' {aka 'unsigned int'} [-Wsign-compare] 6007 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 6026 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 6034 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 6035 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 6036 | for (i=0; i::size_type' {aka 'const unsigned int'} [-Wsign-compare] 6358 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6359:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 6359 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'std::string OpenBabel::getAtomMCDL(OBMol*, int, std::vector, std::vector, std::vector, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6546:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6546 | for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 6591 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6593:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6593 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) n++; | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6599:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6599 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) { | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6609:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6609 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-1; | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6612:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6612 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-2; | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6623:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6623 | if (k == 1) for (i=0; i >::size_type' {aka 'unsigned int'} [-Wsign-compare] 6632 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'unsigned int'} [-Wsign-compare] 6632 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'unsigned int'} [-Wsign-compare] 6642 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'std::string OpenBabel::getBondMCDL(OBMol*, int, int, std::vector, std::vector, int (*)[4], std::vector, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6843:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6843 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6845:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6845 | for (j=i+1; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 6850 | for (j=i+1; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 6864 | for (j=i+1; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 6872 | for (j=i+1; j >::size_type' {aka 'unsigned int'} [-Wsign-compare] 6877 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'unsigned int'} [-Wsign-compare] 6877 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'unsigned int'} [-Wsign-compare] 6887 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6680:26: warning: variable 'n4' set but not used [-Wunused-but-set-variable] 6680 | int i,j,n,m,n1,n2,n3,n4,an1,an2,an3,an4,k; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'void OpenBabel::implementAtomStereo(std::vector&, std::vector&, std::vector&, std::vector, std::vector, int, int, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6960:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 6960 | if (n1 < (astereo.length()-1)) astereo=astereo.substr(n1+1); else astereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'void OpenBabel::implementBondStereo(std::vector, std::vector, std::vector&, std::vector&, int, int, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7024:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 7024 | if (n1 < (bstereo.length()-1)) bstereo=bstereo.substr(n1+1); else bstereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'int OpenBabel::groupRedraw(OBMol*, int, int, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7159:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 7159 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 7167 | for (int i=0; i&, int&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7209:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 7209 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7212:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 7212 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7233:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 7233 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7236:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 7236 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mol.cpp.o -MF CMakeFiles/openbabel.dir/mol.cpp.o.d -o CMakeFiles/openbabel.dir/mol.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp: In member function 'unsigned int OpenBabel::OBMol::NumHvyAtoms() const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp:809:36: warning: unnecessary parentheses in declaration of 'i' [-Wparentheses] 809 | vector::const_iterator(i); | ^~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp:809:36: note: remove parentheses 809 | vector::const_iterator(i); | ^~~ | - - /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp: In member function 'unsigned int OpenBabel::OBMol::GetTotalSpinMultiplicity()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp:1221:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1221 | if (chg % 2 != unpaired_electrons %2) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -MF CMakeFiles/openbabel.dir/pointgroup.cpp.o.d -o CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::establish_pairs(SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:267:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 267 | if( elem->transform[i] >= _mol->NumAtoms() ){ /* No symmetric atom yet */ | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::check_transform_order(SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:311:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 311 | if( elem->transform[i] == i ) /* Identity transform is Ok for any order */ | ~~~~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:315:34: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 315 | if( elem->transform[j] == i ) | ~~~~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::same_transform(SYMMETRY_ELEMENT*, SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:358:31: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 358 | if( b->transform[j] != i ) | ~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'OpenBabel::OBPointGroup::Symbol OpenBabel::OBPointGroup::IdentifyPointGroupSymbol(double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:1958:37: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1958 | || d->NormalAxesCounts[2] >= maxAxis) { // Are there the perpendicular C2 axes? | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:1961:28: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1961 | if (d->PlanesCount >= maxAxis + 1) { // Likely Dnh | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:1986:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1986 | else if (d->PlanesCount == maxAxis) { // Likely Dnd | ~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2088:29: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 2088 | else if (d->PlanesCount >= maxAxis) { // Cnv | ~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'void OpenBabel::OBPointGroup::Symmetrize(OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2175:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 2175 | for (unsigned int i = 0; i < d->PlanesCount; i++) | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2182:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 2182 | for (unsigned int i = 0; i < d->NormalAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2189:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 2189 | for (unsigned int i = 0; i < d->ImproperAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/residue.cpp.o -MF CMakeFiles/openbabel.dir/residue.cpp.o.d -o CMakeFiles/openbabel.dir/residue.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/residue.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotor.cpp.o -MF CMakeFiles/openbabel.dir/rotor.cpp.o.d -o CMakeFiles/openbabel.dir/rotor.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotor.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tokenst.cpp.o -MF CMakeFiles/openbabel.dir/tokenst.cpp.o.d -o CMakeFiles/openbabel.dir/tokenst.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/tokenst.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -MF CMakeFiles/openbabel.dir/reactionfacade.cpp.o.d -o CMakeFiles/openbabel.dir/reactionfacade.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/reactionfacade.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/reactionfacade.cpp: In member function 'void OpenBabel::OBReactionFacadePrivate::FindComponents()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/reactionfacade.cpp:122:15: warning: unused variable 'atm' [-Wunused-variable] 122 | OBAtom* atm = &*atom; | ^~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/spectrophore.cpp.o -MF CMakeFiles/openbabel.dir/spectrophore.cpp.o.d -o CMakeFiles/openbabel.dir/spectrophore.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/spectrophore.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/ring.cpp.o -MF CMakeFiles/openbabel.dir/ring.cpp.o.d -o CMakeFiles/openbabel.dir/ring.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ring.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotamer.cpp.o -MF CMakeFiles/openbabel.dir/rotamer.cpp.o.d -o CMakeFiles/openbabel.dir/rotamer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp: In member function 'void OpenBabel::OBRotamerList::AddRotamer(std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:410:11: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 410 | while (angle < 0.0) | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:412:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 412 | while (angle > 360.0) | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp: In member function 'bool OpenBabel::OBRotamerList::SetCurrentCoordinates(OpenBabel::OBMol&, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:543:11: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 543 | while (angle < 0.0) | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:545:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 545 | while (angle > 360.0) | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tautomer.cpp.o -MF CMakeFiles/openbabel.dir/tautomer.cpp.o.d -o CMakeFiles/openbabel.dir/tautomer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/tautomer.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/tautomer.cpp:26: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/tautomer.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/tautomer.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -MF CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o.d -o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/dlhandler_unix.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:286:28: warning: 'virtual const char* OpenBabel::OBBase::GetTitle(bool) const' was hidden [-Woverloaded-virtual=] 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/reaction.h:99:15: note: by 'std::string OpenBabel::OBReaction::GetTitle() const' 99 | std::string GetTitle() const { return _title; } | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:287:21: warning: 'virtual void OpenBabel::OBBase::SetTitle(const char*)' was hidden [-Woverloaded-virtual=] 287 | virtual void SetTitle(const char *) {} | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/reaction.h:101:8: note: by 'void OpenBabel::OBReaction::SetTitle(const std::string&)' 101 | void SetTitle(const std::string& title) { _title=title; } | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/transform.cpp.o -MF CMakeFiles/openbabel.dir/transform.cpp.o.d -o CMakeFiles/openbabel.dir/transform.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/transform.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/transform.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/transform.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF CMakeFiles/openbabel.dir/typer.cpp.o.d -o CMakeFiles/openbabel.dir/typer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/typer.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -MF CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o.d -o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/matrix3x3.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -MF CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o.d -o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h: In constructor 'OpenBabel::SVGPainter::SVGPainter(std::ostream&, std::set >*, bool, double, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:77:11: warning: 'OpenBabel::SVGPainter::m_fontPointSize' will be initialized after [-Wreorder] 77 | int m_fontPointSize; | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:75:12: warning: 'bool OpenBabel::SVGPainter::m_isFillcolor' [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:75:12: warning: 'OpenBabel::SVGPainter::m_isFillcolor' will be initialized after [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:74:32: warning: 'std::set >* OpenBabel::SVGPainter::m_Gradients' [-Wreorder] 74 | std::set *m_Gradients; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/vector3.cpp.o -MF CMakeFiles/openbabel.dir/math/vector3.cpp.o.d -o CMakeFiles/openbabel.dir/math/vector3.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/vector3.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o -MF CMakeFiles/openbabel.dir/math/transform3d.cpp.o.d -o CMakeFiles/openbabel.dir/math/transform3d.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/transform3d.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -MF CMakeFiles/openbabel.dir/stereo/stereo.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/stereo.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o CMakeFiles/openbabel.dir/confsearch.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/atom.h:30, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp: In constructor 'OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:134:66: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 134 | vec.erase(std::remove_if(vec.begin(), vec.end(), std::bind2nd(std::less(), (cutoff + 0.1) )), vec.end()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp: In member function 'bool OpenBabel::OBDiversePoses::AddPose(std::vector, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:189:14: warning: unused variable 'min_rmsd' [-Wunused-variable] 189 | double min_rmsd = DBL_MAX; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp: In member function 'int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:444:77: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 444 | transform(_energies.begin(), _energies.end(), _energies.begin(), bind2nd(std::plus(), energy_offset)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -MF CMakeFiles/openbabel.dir/depict/depict.cpp.o.d -o CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp: In function 'unsigned int OpenBabel::GetAtomSymClass(OBAtom*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:284:11: warning: unused variable 'nclasses' [-Wunused-variable] 284 | int nclasses = end_pos - copy_sym.begin(); | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp: In member function 'virtual void OpenBabel::OBDepictPrivate::DrawAtomLabel(const std::string&, int, const OpenBabel::vector3&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1024:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable] 1024 | OBFontMetrics metrics = painter->GetFontMetrics(str); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1029:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable] 1029 | OBFontMetrics metrics = painter->GetFontMetrics(subscript); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp: In member function 'void OpenBabel::OBDepictPrivateBallAndStick::DrawAromaticRingBond(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, const OpenBabel::vector3&, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1238:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] 1238 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1238:100: note: add parentheses around 'sizeof (double)' to silence this warning 1238 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ^~~~~~~~~~~~~~ | ( ) /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1237:24: note: array 'dashpattern' declared here 1237 | static const float dashpattern[] = {5., 5.}; | ^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -MF CMakeFiles/openbabel.dir/conformersearch.cpp.o.d -o CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/conformersearch.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:20: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:250:12: warning: unused variable 'score' [-Wunused-variable] 250 | double score = ff->Energy(false); // no gradients | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'bool OpenBabel::OBConformerSearch::Setup(const OpenBabel::OBMol&, int, int, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:351:23: warning: variable 'end_it' set but not used [-Wunused-but-set-variable] 351 | OBRotorIterator end_it = m_rotorList.EndRotors(); | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::local_opt()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:789:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 789 | for (i = 1; i <= m_rotorList.Size(); ++i, rotor = m_rotorList.NextRotor(ri)) | ~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::reproduce(OpenBabel::RotorKey&, OpenBabel::RotorKey&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:850:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 850 | if (iniche > -1) | ~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::share_fitness()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1005:37: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 1005 | if ((dynamic_niches.size () < nb_niches) && (dynamic_niches.size () %2)) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1020:30: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1020 | if (dist < min_dist ) | ~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1033:18: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 1033 | if (imax == -1) | ~~~~~^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1050:40: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 1050 | if (dynamic_niches.size () < nb_niches) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:976:10: warning: unused variable 'flag_niched' [-Wunused-variable] 976 | bool flag_niched = false; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'double OpenBabel::OBConformerSearch::sharing_generation()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1139:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1139 | while (ninsert < ((half_pop * 2) / 3)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1148:24: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1148 | if (iround < imax) | ~~~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1156:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1156 | if (ninsert >= half_pop) | ~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1181:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1181 | while (ninsert < half_pop) | ~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1105:23: warning: unused variable 'lowest' [-Wunused-variable] 1105 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1105:37: warning: unused variable 'highest' [-Wunused-variable] 1105 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/tetranonplanar.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/tetrahedral.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/tetraplanar.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -MF CMakeFiles/openbabel.dir/math/spacegroup.cpp.o.d -o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/spacegroup.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/squareplanar.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -MF CMakeFiles/openbabel.dir/stereo/facade.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/facade.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -MF CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/cistrans.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -MF CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp:25: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -MF CMakeFiles/openbabel.dir/stereo/perception.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'bool OpenBabel::TetStereoToWedgeHash(OBMol&, std::map&, std::map&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2795:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 2795 | for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) | ^~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2951:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 2951 | return true; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OBMol&, OBStereo::Ref)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2973:16: warning: 'template class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ^~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/stereo/stereo.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/stereo/tetranonplanar.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/stereo/tetrahedral.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:26: /usr/include/c++/13/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2973:88: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OBMol&, OBStereo::Ref, OBStereo::Ref)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:3005:16: warning: 'template class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ^~~~~~~~~ /usr/include/c++/13/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:3005:93: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/align.cpp.o -MF CMakeFiles/openbabel.dir/math/align.cpp.o.d -o CMakeFiles/openbabel.dir/math/align.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/align.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/align.cpp: In member function 'std::vector OpenBabel::OBAlign::GetAlignment()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/align.cpp:405:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'Eigen::Index' {aka 'int'} [-Wsign-compare] 405 | for (unsigned int i=0; i struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/distgeom.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'bool OpenBabel::OBDistanceGeometry::generateInitialCoords()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1089:16: warning: unused variable 'lb' [-Wunused-variable] 1089 | double lb = _d->GetLowerBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1090:16: warning: unused variable 'ub' [-Wunused-variable] 1090 | double ub = _d->GetUpperBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'bool OpenBabel::OBDistanceGeometry::firstMinimization()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1136:16: warning: unused variable 'lb' [-Wunused-variable] 1136 | double lb = _d->GetLowerBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1137:16: warning: unused variable 'ub' [-Wunused-variable] 1137 | double ub = _d->GetUpperBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1115:9: warning: unused variable 'niter' [-Wunused-variable] 1115 | int niter = solver.minimize(fun, _coord, fx); | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'bool OpenBabel::OBDistanceGeometry::minimizeFourthDimension()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1160:9: warning: unused variable 'niter' [-Wunused-variable] 1160 | int niter = solver.minimize(fun, _coord, fx); | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'double OpenBabel::DistGeomFunc::operator()(const Eigen::VectorXd&, Eigen::VectorXd&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1325:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare] 1325 | for (size_t i=0; i> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:871:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 871 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:884:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 884 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:884:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 884 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:906:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 906 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:906:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 906 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:921:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 921 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:921:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 921 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:936:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 936 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:936:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 936 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 40%] Linking CXX shared module ../../lib/confabreport.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/confabreport.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/confabreport.so CMakeFiles/confabreport.dir/confabreport.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 40%] Built target confabreport gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 40%] Linking CXX shared module ../../lib/acesformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/acesformat.so CMakeFiles/acesformat.dir/acesformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 40%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Daoforceformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -MF CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o.d -o CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/aoforceformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/aoforceformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 41%] Built target acesformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 40%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcastepformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -MF CMakeFiles/castepformat.dir/castepformat.cpp.o.d -o CMakeFiles/castepformat.dir/castepformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/castepformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/castepformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 40%] Linking CXX shared module ../../lib/abinitformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/abinitformat.so CMakeFiles/abinitformat.dir/abinitformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 42%] Built target abinitformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 40%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrystal09format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -MF CMakeFiles/crystal09format.dir/crystal09format.cpp.o.d -o CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/crystal09format.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/crystal09format.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/crystal09format.cpp:15: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 41%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddaltonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -MF CMakeFiles/daltonformat.dir/daltonformat.cpp.o.d -o CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp: In member function 'virtual bool OpenBabel::DALTONInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp:148:9: warning: variable 'atomcount' set but not used [-Wunused-but-set-variable] 148 | int atomcount = 0; // for each atom type | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp: In member function 'virtual bool OpenBabel::DALTONInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp:312:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 312 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp:332:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 332 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 42%] Linking CXX shared module ../../lib/castepformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/castepformat.so CMakeFiles/castepformat.dir/castepformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 42%] Built target castepformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 41%] Linking CXX shared module ../../lib/aoforceformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/aoforceformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/aoforceformat.so CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 43%] Built target aoforceformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 41%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddmolformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -MF CMakeFiles/dmolformat.dir/dmolformat.cpp.o.d -o CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dmolformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dmolformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 42%] Linking CXX shared module ../../lib/daltonformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/daltonformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 43%] Built target daltonformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 42%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfchkformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:16: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp: In member function 'virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:596:40: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 596 | if (alphaorb_found && (numAOrb > alphaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:609:40: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 609 | if (betaorb_found && (numBOrb > betaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:668:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less_equal; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 668 | bind2nd(less_equal(), 0)) || | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:671:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 671 | bind2nd(greater(), MxBond)) || | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:674:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 674 | bind2nd(less(), 0)) || | ~~~~~~~^~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:677:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 677 | bind2nd(greater(), Natoms))) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:700:40: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 700 | if (numAOrb > 0 && alphaorb.size() == numAOrb) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:704:41: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 704 | if (numBOrb > 0 && betaorb.size() == numBOrb) { // open shell calculation | ~~~~~~~~~~~~~~~^~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 42%] Linking CXX shared module ../../lib/crystal09format.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystal09format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 43%] Linking CXX shared module ../../lib/dmolformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 44%] Built target crystal09format gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 44%] Built target dmolformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 43%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -MF CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o.d -o CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fhiaimsformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fhiaimsformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 40%] Linking CXX shared module ../../lib/adfformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/adfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/adfformat.so CMakeFiles/adfformat.dir/adfformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 44%] Built target adfformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 44%] Linking CXX shared module ../../lib/fhiaimsformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhiaimsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/fhiaimsformat.so CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 44%] Built target fhiaimsformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 43%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -MF CMakeFiles/gamessformat.dir/gamessformat.cpp.o.d -o CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp: In member function 'virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp:587:38: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 587 | for (unsigned int i=0; i < modeCount; ++i) { | ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp:233:9: warning: variable 'ndummyatoms' set but not used [-Wunused-but-set-variable] 233 | int ndummyatoms = 0; | ^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 44%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausszmatformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -MF CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o.d -o CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausszmatformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausszmatformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 44%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -MF CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o.d -o CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:25: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:30: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:228:32: warning: 'virtual const std::string& OpenBabel::OBGenericData::GetValue() const' was hidden [-Woverloaded-virtual=] 228 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:36: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:76:12: note: by 'OpenBabel::OBGridData::GetValue' 76 | double GetValue (vector3 pos) const; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp: In member function 'virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:432:25: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 432 | while (vgd.size() < nCubes) | ~~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:479:26: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 479 | while (values.size() < n*nCubes) | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:114:17: warning: unused variable 'title' [-Wunused-variable] 114 | const char* title = pConv->GetTitle(); | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 44%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgulpformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o -MF CMakeFiles/gulpformat.dir/gulpformat.cpp.o.d -o CMakeFiles/gulpformat.dir/gulpformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gulpformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gulpformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 44%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dhinformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o -MF CMakeFiles/hinformat.dir/hinformat.cpp.o.d -o CMakeFiles/hinformat.dir/hinformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/hinformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/hinformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 43%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgaussformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -MF CMakeFiles/gaussformat.dir/gaussformat.cpp.o.d -o CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/data.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp:17: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp: In function 'void OpenBabel::add_unique_pairdata_to_mol(OBMol*, std::string, std::string, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp:284:19: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 284 | if (vs.size() >= start) | ~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp:287:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 287 | for(i=start+1; (i struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 44%] Linking CXX shared module ../../lib/gamessformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/gamessformat.so CMakeFiles/gamessformat.dir/gamessformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Built target gamessformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 46%] Linking CXX shared module ../../lib/molproformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/molproformat.so CMakeFiles/molproformat.dir/molproformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Built target molproformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Linking CXX shared module ../../lib/pwscfformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Built target pwscfformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 46%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dqchemformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o -MF CMakeFiles/qchemformat.dir/qchemformat.cpp.o.d -o CMakeFiles/qchemformat.dir/qchemformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp:16: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp: In member function 'virtual bool OpenBabel::QChemOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp:194:28: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 194 | if (nbAtomRead != mol.NumAtoms()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dturbomoleformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -MF CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o.d -o CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/turbomoleformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/turbomoleformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsiestaformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o -MF CMakeFiles/siestaformat.dir/siestaformat.cpp.o.d -o CMakeFiles/siestaformat.dir/siestaformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp: In member function 'virtual bool OpenBabel::SIESTAFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp:92:10: warning: variable 'coordsAreAngstrom' set but not used [-Wunused-but-set-variable] 92 | bool coordsAreAngstrom = false; | ^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp:98:12: warning: variable 'size' set but not used [-Wunused-but-set-variable] 98 | size_t size; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp:102:30: warning: unused variable 'numSpecies' [-Wunused-variable] 102 | int atomicNum, numAtoms, numSpecies; | ^~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 46%] Linking CXX shared module ../../lib/mopacformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Built target mopacformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Linking CXX shared module ../../lib/turbomoleformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Built target turbomoleformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Linking CXX shared module ../../lib/qchemformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Built target qchemformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 46%] Linking CXX shared module ../../lib/gaussformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Built target gaussformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 46%] Linking CXX shared module ../../lib/nwchemformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nwchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/nwchemformat.so CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Built target nwchemformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dzindoformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o -MF CMakeFiles/zindoformat.dir/zindoformat.cpp.o.d -o CMakeFiles/zindoformat.dir/zindoformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/zindoformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/zindoformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dvaspformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o -MF CMakeFiles/vaspformat.dir/vaspformat.cpp.o.d -o CMakeFiles/vaspformat.dir/vaspformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:451:17: warning: unused variable 'freqnum' [-Wunused-variable] 451 | int freqnum = atoi(vs[0].c_str()); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:535:35: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = not_equal_to; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 535 | std::bind2nd(std::not_equal_to(), 0.0)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:589:36: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = divides; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 589 | std::bind2nd(std::divides(), max / 100.0)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:668:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 668 | for(int i = 0; i < atoms_sorted.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxsfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o -MF CMakeFiles/xsfformat.dir/xsfformat.cpp.o.d -o CMakeFiles/xsfformat.dir/xsfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xsfformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xsfformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o -MF CMakeFiles/APIInterface.dir/APIInterface.cpp.o.d -o CMakeFiles/APIInterface.dir/APIInterface.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/APIInterface.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/APIInterface.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 48%] Linking CXX shared module ../../lib/zindoformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/zindoformat.so CMakeFiles/zindoformat.dir/zindoformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 48%] Built target zindoformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Linking CXX shared module ../../lib/siestaformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/siestaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/siestaformat.so CMakeFiles/siestaformat.dir/siestaformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 48%] Built target siestaformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dorcaformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o -MF CMakeFiles/orcaformat.dir/orcaformat.cpp.o.d -o CMakeFiles/orcaformat.dir/orcaformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp: In member function 'virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:348:33: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 348 | while(vs.size() == nColumn+1) { | ~~~~~~~~~~^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:363:48: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 363 | for (unsigned int i = 0; i < nColumn; i++) { | ~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:375:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 375 | for (unsigned int i = 0; i < nColumn; i++) { | ~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:131:12: warning: unused variable 'energy' [-Wunused-variable] 131 | double energy=0; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:138:9: warning: variable 'nModeAll' set but not used [-Wunused-but-set-variable] 138 | int nModeAll = 0; | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 48%] Linking CXX shared module ../../lib/APIInterface.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/APIInterface.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 48%] Built target APIInterface gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 48%] Linking CXX shared module ../../lib/xsfformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/xsfformat.so CMakeFiles/xsfformat.dir/xsfformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 48%] Built target xsfformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessukformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -MF CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o.d -o CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:14: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadInitialCartesian(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:787:10: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 787 | bool ok=false; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz1(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:853:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 853 | bool ok=false; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz2(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:900:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 900 | bool ok=false; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp: In member function 'virtual bool OpenBabel::GAMESSUKOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:1215:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 1215 | bool ok; | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 48%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o -MF CMakeFiles/CSRformat.dir/CSRformat.cpp.o.d -o CMakeFiles/CSRformat.dir/CSRformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/CSRformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/CSRformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 48%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o -MF CMakeFiles/PQSformat.dir/PQSformat.cpp.o.d -o CMakeFiles/PQSformat.dir/PQSformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/PQSformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/PQSformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 49%] Linking CXX shared module ../../lib/CSRformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/CSRformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 49%] Built target CSRformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 48%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dalchemyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -MF CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o.d -o CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/alchemyformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/alchemyformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 49%] Linking CXX shared module ../../lib/PQSformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/PQSformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 49%] Built target PQSformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 48%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -MF CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o.d -o CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp: In member function 'void OpenBabel::MCDLFormat::solve(int, int (*)[4], int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:283:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 283 | if (jflag) | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:287:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 287 | nt = 1; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp: In member function 'void OpenBabel::MCDLFormat::setMCDL(std::string, OpenBabel::OBMol*, std::string&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:1267:15: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1267 | if (nPrev == acount) { | ~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp: In member function 'int OpenBabel::MCDLFormat::indexOf(std::string, std::string, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:1385:16: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string::size_type' {aka 'const unsigned int'} [-Wsign-compare] 1385 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:1386:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 1386 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp: In member function 'int OpenBabel::MCDLFormat::lastIndexOf(std::string, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:1399:11: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string::size_type' {aka 'const unsigned int'} [-Wsign-compare] 1399 | if (n == string::npos) | ~~^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 49%] Linking CXX shared module ../../lib/alchemyformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/alchemyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/alchemyformat.so CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 50%] Built target alchemyformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 49%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacrformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o -MF CMakeFiles/acrformat.dir/acrformat.cpp.o.d -o CMakeFiles/acrformat.dir/acrformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/acrformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/acrformat.cpp:26: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/acrformat.cpp:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 49%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Damberformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o -MF CMakeFiles/amberformat.dir/amberformat.cpp.o.d -o CMakeFiles/amberformat.dir/amberformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/amberformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/amberformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 51%] Linking CXX shared module ../../lib/acrformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/acrformat.so CMakeFiles/acrformat.dir/acrformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 52%] Built target acrformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 51%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbalstformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o -MF CMakeFiles/balstformat.dir/balstformat.cpp.o.d -o CMakeFiles/balstformat.dir/balstformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/balstformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/balstformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 52%] Linking CXX shared module ../../lib/amberformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/amberformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/amberformat.so CMakeFiles/amberformat.dir/amberformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 52%] Built target amberformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 48%] Linking CXX shared module ../../lib/orcaformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/orcaformat.so CMakeFiles/orcaformat.dir/orcaformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 52%] Built target orcaformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 48%] Linking CXX shared module ../../lib/vaspformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/vaspformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/vaspformat.so CMakeFiles/vaspformat.dir/vaspformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 52%] Built target vaspformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 52%] Linking CXX shared module ../../lib/balstformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/balstformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/balstformat.so CMakeFiles/balstformat.dir/balstformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 53%] Built target balstformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 52%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbgfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o -MF CMakeFiles/bgfformat.dir/bgfformat.cpp.o.d -o CMakeFiles/bgfformat.dir/bgfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/bgfformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/bgfformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 52%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dboxformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o -MF CMakeFiles/boxformat.dir/boxformat.cpp.o.d -o CMakeFiles/boxformat.dir/boxformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/boxformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/boxformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 53%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacheformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o -MF CMakeFiles/cacheformat.dir/cacheformat.cpp.o.d -o CMakeFiles/cacheformat.dir/cacheformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cacheformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cacheformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 52%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacaoformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -MF CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o.d -o CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cacaoformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cacaoformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 53%] Linking CXX shared module ../../lib/boxformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/boxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/boxformat.so CMakeFiles/boxformat.dir/boxformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 53%] Linking CXX shared module ../../lib/bgfformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/bgfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/bgfformat.so CMakeFiles/bgfformat.dir/bgfformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 53%] Built target boxformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 53%] Built target bgfformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 53%] Linking CXX shared module ../../lib/cacheformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacheformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/cacheformat.so CMakeFiles/cacheformat.dir/cacheformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 53%] Built target cacheformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 53%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcarformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/carformat.dir/carformat.cpp.o -MF CMakeFiles/carformat.dir/carformat.cpp.o.d -o CMakeFiles/carformat.dir/carformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/carformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/carformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 53%] Linking CXX shared module ../../lib/cacaoformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacaoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 53%] Built target cacaoformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 49%] Linking CXX shared module ../../lib/gamessukformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessukformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/gamessukformat.so CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 54%] Built target gamessukformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 46%] Linking CXX shared module ../lib/plugin_charges.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.cpp.o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o CMakeFiles/plugin_charges.dir/charges/none.cpp.o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz ../lib/libopenbabel.so.7.0.0 gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 54%] Built target plugin_charges gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/cofformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 53%] Linking CXX shared module ../../lib/carformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/carformat.so CMakeFiles/carformat.dir/carformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 54%] Built target carformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 53%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcccformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o -MF CMakeFiles/cccformat.dir/cccformat.cpp.o.d -o CMakeFiles/cccformat.dir/cccformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cccformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cccformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 53%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchem3dformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -MF CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o.d -o CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chem3dformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chem3dformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/math/matrix3x3.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chem3dformat.cpp:17: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 53%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawct_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -MF CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o.d -o CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chemdrawct.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chemdrawct.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 54%] Linking CXX shared module ../../lib/cccformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cccformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/cccformat.so CMakeFiles/cccformat.dir/cccformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 54%] Built target cccformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 54%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemtoolformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -MF CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o.d -o CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chemtoolformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chemtoolformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 54%] Linking CXX shared module ../../lib/chem3dformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chem3dformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 54%] Built target chem3dformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 54%] Linking CXX shared module ../../lib/chemdrawct.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawct.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 55%] Built target chemdrawct gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 54%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrkformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o -MF CMakeFiles/crkformat.dir/crkformat.cpp.o.d -o CMakeFiles/crkformat.dir/crkformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/crkformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/crkformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 54%] Linking CXX shared module ../../lib/chemtoolformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemtoolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/chemtoolformat.so CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 56%] Built target chemtoolformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 50%] Linking CXX shared module ../../lib/MCDLformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MCDLformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/MCDLformat.so CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 56%] Built target MCDLformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 54%] Building CXX object src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcofformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o -MF CMakeFiles/cofformat.dir/cofformat.cpp.o.d -o CMakeFiles/cofformat.dir/cofformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp: In member function 'virtual bool OpenBabel::COFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp:133:22: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 133 | if(vs.size() < offset+9) | ~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp:180:26: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 180 | for(int j=0 ; j< natoms ; j++) | ~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp: In member function 'virtual bool OpenBabel::COFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp:368:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 368 | for( int j=0; j struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 56%] Linking CXX shared module ../../lib/crkformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/crkformat.so CMakeFiles/crkformat.dir/crkformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 57%] Built target crkformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 57%] Linking CXX shared module ../../lib/cssrformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 57%] Built target cssrformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 56%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastaformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o -MF CMakeFiles/fastaformat.dir/fastaformat.cpp.o.d -o CMakeFiles/fastaformat.dir/fastaformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastaformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastaformat.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastaformat.cpp: In function 'void OpenBabel::add_residue(OBMol*, OBResidue*, double, double, long unsigned int&, ResidueRecord*, int, OBAtom*&, bool, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastaformat.cpp:394:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 394 | else if (atom_count > resBondFromOffset) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 55%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddlpolyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -MF CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o.d -o CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dlpolyformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dlpolyformat.cpp:14: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dlpolyformat.cpp: In member function 'bool OpenBabel::DlpolyInputReader::ParseUnitCell(std::istream&, OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dlpolyformat.cpp:152:10: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 152 | bool ok; | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 55%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dexyzformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o -MF CMakeFiles/exyzformat.dir/exyzformat.cpp.o.d -o CMakeFiles/exyzformat.dir/exyzformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/exyzformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/exyzformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/exyzformat.cpp: In member function 'virtual bool OpenBabel::EXYZFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/exyzformat.cpp:124:19: warning: variable 'virtualAtoms' set but not used [-Wunused-but-set-variable] 124 | bool unitCell,virtualAtoms; | ^~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 56%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastsearchformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -MF CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o.d -o CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp:16: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp: In member function 'void OpenBabel::FastSearchFormat::AddPattern(std::vector&, OpenBabel::OBMol, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp:690:11: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 690 | if(idx>=patternMol.NumBonds()) | ~~~^~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 54%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcifformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o -MF CMakeFiles/cifformat.dir/cifformat.cpp.o.d -o CMakeFiles/cifformat.dir/cifformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp: In member function 'void OpenBabel::CIFData::CalcMatrices()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:915:11: warning: variable 'aa' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:915:14: warning: variable 'bb' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:915:27: warning: variable 'betaa' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:915:33: warning: variable 'gammaa' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 57%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfeatformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/featformat.dir/featformat.cpp.o -MF CMakeFiles/featformat.dir/featformat.cpp.o.d -o CMakeFiles/featformat.dir/featformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/featformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/featformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 57%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o -MF CMakeFiles/fhformat.dir/fhformat.cpp.o.d -o CMakeFiles/fhformat.dir/fhformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fhformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fhformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 57%] Linking CXX shared module ../../lib/fastaformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 58%] Built target fastaformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 57%] Linking CXX shared module ../../lib/cofformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cofformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/cofformat.so CMakeFiles/cofformat.dir/cofformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 58%] Built target cofformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 58%] Linking CXX shared module ../../lib/featformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/featformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/featformat.so CMakeFiles/featformat.dir/featformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 58%] Built target featformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 58%] Linking CXX shared module ../../lib/fhformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/fhformat.so CMakeFiles/fhformat.dir/fhformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 59%] Built target fhformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 58%] Linking CXX shared module ../../lib/exyzformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/exyzformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/exyzformat.so CMakeFiles/exyzformat.dir/exyzformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 59%] Built target exyzformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 58%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfingerprintformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -MF CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o.d -o CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fingerprintformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fingerprintformat.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fingerprintformat.cpp:15: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 58%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfpsformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o -MF CMakeFiles/fpsformat.dir/fpsformat.cpp.o.d -o CMakeFiles/fpsformat.dir/fpsformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp:15: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp: In member function 'virtual bool OpenBabel::FPSFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp:152:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 152 | for(unsigned i=0;i<(_nbits+31)/32;++i) | ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp: In member function 'std::string OpenBabel::FPSFormat::getTimeStr()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp:175:10: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] 175 | size_t time_res; /* Result of strftime */ | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 58%] Linking CXX shared module ../../lib/fastsearchformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastsearchformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/fastsearchformat.so CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Built target fastsearchformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 59%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfreefracformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o -MF CMakeFiles/freefracformat.dir/freefracformat.cpp.o.d -o CMakeFiles/freefracformat.dir/freefracformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/freefracformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/freefracformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgromos96format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o -MF CMakeFiles/gromos96format.dir/gromos96format.cpp.o.d -o CMakeFiles/gromos96format.dir/gromos96format.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gromos96format.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gromos96format.cpp:54: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Linking CXX shared module ../../lib/fingerprintformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fingerprintformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/fingerprintformat.so CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 59%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dghemicalformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -MF CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o.d -o CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/ghemicalformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/ghemicalformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 57%] Linking CXX shared module ../../lib/dlpolyformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlpolyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/dlpolyformat.so CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Built target dlpolyformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Built target fingerprintformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Linking CXX shared module ../../lib/fpsformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/fpsformat.so CMakeFiles/fpsformat.dir/fpsformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Built target fpsformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Linking CXX shared module ../../lib/gromos96format.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Built target gromos96format gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Linking CXX shared module ../../lib/freefracformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/freefracformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/freefracformat.so CMakeFiles/freefracformat.dir/freefracformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Built target freefracformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Linking CXX shared module ../../lib/ghemicalformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ghemicalformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/ghemicalformat.so CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Built target ghemicalformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgroformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/groformat.dir/groformat.cpp.o -MF CMakeFiles/groformat.dir/groformat.cpp.o.d -o CMakeFiles/groformat.dir/groformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/groformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/groformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlmpdatformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -MF CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o.d -o CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp: In member function 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp:277:20: warning: unused variable 'length' [-Wunused-variable] 277 | double length=cmax-cmin; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp:367:25: warning: unused variable 'atomid' [-Wunused-variable] 367 | int atomid=5; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp:368:28: warning: unused variable 'charge' [-Wunused-variable] 368 | double charge=0.5; | ^~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlpmdformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -MF CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o.d -o CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp: In member function 'virtual bool OpenBabel::LpmdFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:196:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 196 | if(int(headers.size()-1)!=tokens.size()) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:210:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 210 | for(int i=1 ; i < headers.size() ; ++i) //the first element is HDR | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:243:11: warning: unused variable 'FX' [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:243:32: warning: unused variable 'FY' [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:243:53: warning: unused variable 'FZ' [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp: In member function 'virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:366:18: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 366 | for(int i=0; i < mol.NumAtoms() ; ++i) | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:382:15: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 382 | for(int i=0;i struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdffformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o -MF CMakeFiles/mdffformat.dir/mdffformat.cpp.o.d -o CMakeFiles/mdffformat.dir/mdffformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp: In member function 'virtual bool OpenBabel::MDFFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:249:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 249 | for(int i = 0; i < atom_t_prop.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:270:33: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 270 | for(unsigned int j = 0; j < atom_t_prop[i].num_of_atoms; j++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp: In member function 'bool OpenBabel::aindx::operator<(const OpenBabel::aindx&) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:329:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 329 | for(int i = 0; i < vs.size(); i++) | ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp: In member function 'virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:388:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 388 | for(int i = 0; i < vs.size(); i++) | ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:443:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, unsigned int> >::size_type' {aka 'unsigned int'} [-Wsign-compare] 443 | for (int i = 0; i < atypes_def.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:450:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, unsigned int> >::size_type' {aka 'unsigned int'} [-Wsign-compare] 450 | for (int i = 0; i < atypes_def.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:500:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, unsigned int> >::size_type' {aka 'unsigned int'} [-Wsign-compare] 500 | for(int j = 0; j < atypes_def.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmcifformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -MF CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o.d -o CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mmcifformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mmcifformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmoldenformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o -MF CMakeFiles/moldenformat.dir/moldenformat.cpp.o.d -o CMakeFiles/moldenformat.dir/moldenformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/moldenformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/moldenformat.cpp:35: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/moldenformat.cpp:27: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 61%] Linking CXX shared module ../../lib/mmodformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mmodformat.so CMakeFiles/mmodformat.dir/mmodformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 61%] Built target mmodformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 60%] Linking CXX shared module ../../lib/groformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/groformat.so CMakeFiles/groformat.dir/groformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 61%] Built target groformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 58%] Linking CXX shared module ../../lib/cifformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cifformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/cifformat.so CMakeFiles/cifformat.dir/cifformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 61%] Built target cifformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 61%] Linking CXX shared module ../../lib/lmpdatformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 61%] Built target lmpdatformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 61%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpdformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o -MF CMakeFiles/mpdformat.dir/mpdformat.cpp.o.d -o CMakeFiles/mpdformat.dir/mpdformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpdformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpdformat.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpdformat.cpp: In member function 'virtual bool OpenBabel::MPDFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpdformat.cpp:210:42: warning: variable 'idx_true' set but not used [-Wunused-but-set-variable] 210 | bool xml_true=false, pre_true=false, idx_true=false; | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 61%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpqcformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -MF CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o.d -o CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpqcformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpqcformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 61%] Linking CXX shared module ../../lib/lpmdformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lpmdformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/lpmdformat.so CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 62%] Built target lpmdformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 62%] Linking CXX shared module ../../lib/mpdformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpdformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 62%] Built target mpdformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 62%] Linking CXX shared module ../../lib/mpqcformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 62%] Built target mpqcformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 61%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsmsformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o -MF CMakeFiles/msmsformat.dir/msmsformat.cpp.o.d -o CMakeFiles/msmsformat.dir/msmsformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msmsformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msmsformat.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msmsformat.cpp:26: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 61%] Linking CXX shared module ../../lib/moldenformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldenformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 63%] Built target moldenformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 61%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o -MF CMakeFiles/msiformat.dir/msiformat.cpp.o.d -o CMakeFiles/msiformat.dir/msiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msiformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msiformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msiformat.cpp: In member function 'virtual bool OpenBabel::MSIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msiformat.cpp:77:17: warning: unused variable 'title' [-Wunused-variable] 77 | const char* title = pConv->GetTitle(); | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 63%] Linking CXX shared module ../../lib/msmsformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msmsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/msmsformat.so CMakeFiles/msmsformat.dir/msmsformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 63%] Built target msmsformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 61%] Linking CXX shared module ../../lib/mdffformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdffformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mdffformat.so CMakeFiles/mdffformat.dir/mdffformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 63%] Built target mdffformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 62%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Doutformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/outformat.dir/outformat.cpp.o -MF CMakeFiles/outformat.dir/outformat.cpp.o.d -o CMakeFiles/outformat.dir/outformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/outformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/outformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 63%] Linking CXX shared module ../../lib/msiformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/msiformat.so CMakeFiles/msiformat.dir/msiformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 64%] Built target msiformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 63%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpcmodelformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -MF CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o.d -o CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pcmodelformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pcmodelformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 61%] Linking CXX shared module ../../lib/mmcifformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 65%] Built target mmcifformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 62%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dopendxformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o -MF CMakeFiles/opendxformat.dir/opendxformat.cpp.o.d -o CMakeFiles/opendxformat.dir/opendxformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp:21: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp:25: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:228:32: warning: 'virtual const std::string& OpenBabel::OBGenericData::GetValue() const' was hidden [-Woverloaded-virtual=] 228 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:76:12: note: by 'OpenBabel::OBGridData::GetValue' 76 | double GetValue (vector3 pos) const; | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 64%] Linking CXX shared module ../../lib/outformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/outformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/outformat.so CMakeFiles/outformat.dir/outformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 65%] Built target outformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 63%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpointcloudformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -MF CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o.d -o CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp:30: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp:28: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp: In member function 'virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp:226:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 226 | for( int j = 0; j < radius_mult_list.size(); j++ ) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 65%] Linking CXX shared module ../../lib/pcmodelformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 65%] Built target pcmodelformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 63%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dposformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/posformat.dir/posformat.cpp.o -MF CMakeFiles/posformat.dir/posformat.cpp.o.d -o CMakeFiles/posformat.dir/posformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/posformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/posformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 65%] Linking CXX shared module ../../lib/opendxformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 66%] Built target opendxformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 65%] Linking CXX shared module ../../lib/pointcloudformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pointcloudformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/pointcloudformat.so CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 66%] Built target pointcloudformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 65%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dshelxformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o -MF CMakeFiles/shelxformat.dir/shelxformat.cpp.o.d -o CMakeFiles/shelxformat.dir/shelxformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/shelxformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/shelxformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/math/matrix3x3.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/shelxformat.cpp:17: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 64%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpqrformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o -MF CMakeFiles/pqrformat.dir/pqrformat.cpp.o.d -o CMakeFiles/pqrformat.dir/pqrformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp: In function 'double OpenBabel::parseAtomCharge(char*, OBMol&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp:207:13: warning: unused variable 'atom' [-Wunused-variable] 207 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp: In function 'double OpenBabel::parseAtomRadius(char*, OBMol&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp:222:13: warning: unused variable 'atom' [-Wunused-variable] 222 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 63%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbqtformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -MF CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o.d -o CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp: In function 'bool OpenBabel::OutputTree(OBConversion*, OBMol&, std::ostream&, std::map&, unsigned int, bool, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:581:20: warning: unused variable 'child' [-Wunused-variable] 581 | unsigned int child=i; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp: In function 'bool OpenBabel::Separate_preserve_charges(OBMol&, std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:797:9: warning: unused variable 'fragments' [-Wunused-variable] 797 | int fragments = 0; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:750:16: warning: 'unsigned int OpenBabel::AtomsSoFar(const std::map&, unsigned int)' defined but not used [-Wunused-function] 750 | unsigned int AtomsSoFar(const map & tree, unsigned int depth) | ^~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 66%] Linking CXX shared module ../../lib/posformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/posformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/posformat.so CMakeFiles/posformat.dir/posformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 67%] Built target posformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 67%] Linking CXX shared module ../../lib/shelxformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 68%] Built target shelxformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 65%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dstlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o -MF CMakeFiles/stlformat.dir/stlformat.cpp.o.d -o CMakeFiles/stlformat.dir/stlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp:32: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp:28: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp: In function 'void OpenBabel::map_sphere(std::vector&, vector3, double, uint16_t)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp:157:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 157 | for( int i=0 ; i < points.size()-2; i++ ) { | ~~^~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 66%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dthermoformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o -MF CMakeFiles/thermoformat.dir/thermoformat.cpp.o.d -o CMakeFiles/thermoformat.dir/thermoformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/thermoformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/thermoformat.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/thermoformat.cpp:21: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 67%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtinkerformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -MF CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o.d -o CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp: In function 'int OpenBabel::SetMM3Type(OBAtom*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp:415:11: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 415 | if (b->GetHyb() == 2) // S=C | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp:416:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 416 | countNeighborC++; break; | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 65%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmileyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o -MF CMakeFiles/smileyformat.dir/smileyformat.cpp.o.d -o CMakeFiles/smileyformat.dir/smileyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp: In member function 'void OpenBabel::OpenBabelCallback::setChiral(int, Smiley::Chirality, const std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'NotChiral' not handled in switch [-Wswitch] 158 | switch (chirality) { | ^ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TH1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TH2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'AL1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'AL2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'SP1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'SP2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'SP3' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB3' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB4' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB5' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB6' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB7' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB8' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB9' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB10' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB11' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB12' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB13' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB14' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB15' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB16' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB17' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB18' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB19' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB20' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH3' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH4' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH5' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH6' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH7' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH8' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH9' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH10' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH11' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH12' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH13' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH14' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH15' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH16' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH17' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH18' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH19' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH20' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH21' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH22' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH23' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH24' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH25' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH26' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH27' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH28' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH29' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH30' not handled in switch [-Wswitch] In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:26: /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h: In instantiation of 'void Smiley::Parser::processStereochemistry() [with Callback = OpenBabel::OpenBabelCallback]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2707:9: required from 'void Smiley::Parser::parse(const std::string&) [with Callback = OpenBabel::OpenBabelCallback; std::string = std::__cxx11::basic_string]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:370:19: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2642:43: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 2642 | if (m_chiralInfo[i].nbrs.size() != expectedValence && m_exceptions & InvalidChiralValence) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h: In instantiation of 'Smiley::Parser::RingBondInfo::RingBondInfo(int, int, bool, bool, bool, std::size_t) [with Callback = OpenBabel::OpenBabelCallback; std::size_t = unsigned int]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2409:41: required from 'void Smiley::Parser::processRingBond(int, std::size_t) [with Callback = OpenBabel::OpenBabelCallback; std::size_t = unsigned int]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2429:11: required from 'void Smiley::Parser::parseRingBond() [with Callback = OpenBabel::OpenBabelCallback]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2507:13: required from 'void Smiley::Parser::parseChain() [with Callback = OpenBabel::OpenBabelCallback]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2698:9: required from 'void Smiley::Parser::parse(const std::string&) [with Callback = OpenBabel::OpenBabelCallback; std::string = std::__cxx11::basic_string]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:370:19: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:986:14: warning: 'Smiley::Parser::RingBondInfo::isExplicit' will be initialized after [-Wreorder] 986 | bool isExplicit; | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:981:21: warning: 'std::size_t Smiley::Parser::RingBondInfo::pos' [-Wreorder] 981 | std::size_t pos; | ^~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:974:9: warning: when initialized here [-Wreorder] 974 | RingBondInfo(int number_, int order_, bool isUp_, bool isDown_, | ^~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 69%] Linking CXX shared module ../../lib/stlformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/stlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/stlformat.so CMakeFiles/stlformat.dir/stlformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 69%] Built target stlformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/wlnformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 68%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dunichemformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o -MF CMakeFiles/unichemformat.dir/unichemformat.cpp.o.d -o CMakeFiles/unichemformat.dir/unichemformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/unichemformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/unichemformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 68%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dviewmolformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -MF CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o.d -o CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/viewmolformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/viewmolformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 67%] Linking CXX shared module ../../lib/pqrformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 70%] Built target pqrformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 69%] Linking CXX shared module ../../lib/thermoformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 70%] Built target thermoformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 69%] Linking CXX shared module ../../lib/tinkerformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 71%] Built target tinkerformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 69%] Linking CXX shared module ../../lib/unichemformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/unichemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 71%] Built target unichemformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 69%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dwlnformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o -MF CMakeFiles/wlnformat.dir/wlnformat.cpp.o.d -o CMakeFiles/wlnformat.dir/wlnformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/wlnformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/wlnformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/wlnformat.cpp: In member function 'virtual bool OpenBabel::WLNFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/wlnformat.cpp:138:17: warning: unused variable 'title' [-Wunused-variable] 138 | const char* title = pConv->GetTitle(); | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 70%] Linking CXX shared module ../../lib/viewmolformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/viewmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/viewmolformat.so CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 72%] Built target viewmolformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 70%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxedformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o -MF CMakeFiles/xedformat.dir/xedformat.cpp.o.d -o CMakeFiles/xedformat.dir/xedformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xedformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xedformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 71%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxyzformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o -MF CMakeFiles/xyzformat.dir/xyzformat.cpp.o.d -o CMakeFiles/xyzformat.dir/xyzformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xyzformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xyzformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 71%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dyasaraformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -MF CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o.d -o CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp:34: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp: In member function 'virtual bool OpenBabel::YOBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp:373:21: warning: variable 'reslen' set but not used [-Wunused-but-set-variable] 373 | int /*samenames,*/reslen,charged; | ^~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 72%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dwlnformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -MF CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o.d -o CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/wln-nextmove.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 72%] Linking CXX shared module ../../lib/xedformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xedformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/xedformat.so CMakeFiles/xedformat.dir/xedformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 72%] Built target xedformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 72%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drxnformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o -MF CMakeFiles/rxnformat.dir/rxnformat.cpp.o.d -o CMakeFiles/rxnformat.dir/rxnformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp:26: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp:18: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp: In member function 'virtual bool OpenBabel::RXNFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp:196:22: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 196 | for (int i=0; i