<86>Sep 23 06:04:21 userdel[306591]: delete user 'rooter' <86>Sep 23 06:04:21 userdel[306591]: removed group 'rooter' owned by 'rooter' <86>Sep 23 06:04:21 userdel[306591]: removed shadow group 'rooter' owned by 'rooter' <86>Sep 23 06:04:21 groupadd[306619]: group added to /etc/group: name=rooter, GID=1868 <86>Sep 23 06:04:21 groupadd[306619]: group added to /etc/gshadow: name=rooter <86>Sep 23 06:04:21 groupadd[306619]: new group: name=rooter, GID=1868 <86>Sep 23 06:04:21 useradd[306635]: new user: name=rooter, UID=1868, GID=1868, home=/root, shell=/bin/bash, from=none <86>Sep 23 06:04:21 userdel[306649]: delete user 'builder' <86>Sep 23 06:04:21 userdel[306649]: removed group 'builder' owned by 'builder' <86>Sep 23 06:04:21 userdel[306649]: removed shadow group 'builder' owned by 'builder' <86>Sep 23 06:04:21 groupadd[306660]: group added to /etc/group: name=builder, GID=1869 <86>Sep 23 06:04:21 groupadd[306660]: group added to /etc/gshadow: name=builder <86>Sep 23 06:04:21 groupadd[306660]: new group: name=builder, GID=1869 <86>Sep 23 06:04:21 useradd[306673]: new user: name=builder, UID=1869, GID=1869, home=/usr/src, shell=/bin/bash, from=none warning: user user does not exist - using root warning: group user does not exist - using root warning: user user does not exist - using root warning: group user does not exist - using root warning: user user does not exist - using root warning: group user does not exist - using root warning: user user does not exist - using root warning: group user does not exist - using root <13>Sep 23 06:04:25 rpmi: xorg-proto-devel-2023.2-alt1 sisyphus+327257.100.1.1 1692178218 installed <13>Sep 23 06:04:25 rpmi: libglvnd-7:1.6.0-alt2 sisyphus+321612.100.1.1 1684749008 installed <13>Sep 23 06:04:25 rpmi: libpng16-1.6.40-alt1 sisyphus+323732.100.1.1 1687771859 installed <13>Sep 23 06:04:25 rpmi: libexpat-2.5.0-alt1 sisyphus+309227.100.1.1 1667075766 installed <13>Sep 23 06:04:25 rpmi: libjpeg-2:2.1.2-alt1.2 sisyphus+300827.100.2.1 1653916654 installed <13>Sep 23 06:04:25 rpmi: libwayland-server-1.22.0-alt1.1 sisyphus+318010.100.1.1 1680606300 installed <13>Sep 23 06:04:26 rpmi: libicu73-1:7.3.2-alt1 sisyphus+323036.100.1.1 1686763401 installed <13>Sep 23 06:04:26 rpmi: libgraphite2-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605157 installed <13>Sep 23 06:04:26 rpmi: zlib-devel-1.2.13-alt1 sisyphus+309409.200.2.1 1667402045 installed <13>Sep 23 06:04:26 rpmi: libXau-1.0.11-alt1 sisyphus+311428.100.1.1 1670577440 installed <13>Sep 23 06:04:26 rpmi: xml-utils-1:2.10.4-alt1 sisyphus+311250.4140.175.1 1685629210 installed <13>Sep 23 06:04:26 rpmi: rpm-build-gir-0.7.3-alt3.1 sisyphus+319393.100.1.1 1682538783 installed <13>Sep 23 06:04:26 rpmi: libXau-devel-1.0.11-alt1 sisyphus+311428.100.1.1 1670577440 installed <13>Sep 23 06:04:26 rpmi: libpng-devel-1.6.40-alt1 sisyphus+323732.100.1.1 1687771859 installed <13>Sep 23 06:04:26 rpmi: libgraphite2-devel-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605157 installed <13>Sep 23 06:04:26 rpmi: icu-utils-1:7.3.2-alt1 sisyphus+323036.100.1.1 1686763401 installed <13>Sep 23 06:04:26 rpmi: libicu-devel-1:7.3.2-alt1 sisyphus+323036.100.1.1 1686763401 installed <13>Sep 23 06:04:26 rpmi: libGLES-7:1.6.0-alt2 sisyphus+321612.100.1.1 1684749008 installed <13>Sep 23 06:04:26 rpmi: libOpenGL-7:1.6.0-alt2 sisyphus+321612.100.1.1 1684749008 installed <13>Sep 23 06:04:26 rpmi: libncurses6-6.3.20220618-alt4 sisyphus+328055.40.2.1 1693213017 installed <13>Sep 23 06:04:26 rpmi: libtinfo-devel-6.3.20220618-alt4 sisyphus+328055.40.2.1 1693213017 installed <13>Sep 23 06:04:26 rpmi: libncurses-devel-6.3.20220618-alt4 sisyphus+328055.40.2.1 1693213017 installed <13>Sep 23 06:04:26 rpmi: libxshmfence-1.3.2-alt1 sisyphus+311428.400.1.1 1670577529 installed <13>Sep 23 06:04:26 rpmi: libwayland-client-1.22.0-alt1.1 sisyphus+318010.100.1.1 1680606300 installed <13>Sep 23 06:04:26 rpmi: libpciaccess-1:0.17-alt1 sisyphus+308663.300.1.1 1666168262 installed <13>Sep 23 06:04:26 rpmi: libdrm-1:2.4.116-alt2 sisyphus+328892.100.1.1 1694073854 installed <13>Sep 23 06:04:26 rpmi: gcc-c++-common-1.4.27-alt1 sisyphus+278099.1300.1.1 1626028636 installed <13>Sep 23 06:04:26 rpmi: libstdc++13-devel-13.2.1-alt2 sisyphus+327572.100.1.1 1692472364 installed <13>Sep 23 06:04:27 rpmi: gcc13-c++-13.2.1-alt2 sisyphus+327572.100.1.1 1692472364 installed <13>Sep 23 06:04:27 rpmi: libpixman-3:0.42.2-alt1 sisyphus+309549.100.1.1 1667649379 installed <13>Sep 23 06:04:27 rpmi: libbrotlicommon-1.1.0-alt1 sisyphus+328501.100.1.1 1693598420 installed <13>Sep 23 06:04:27 rpmi: libbrotlidec-1.1.0-alt1 sisyphus+328501.100.1.1 1693598420 installed <13>Sep 23 06:04:27 rpmi: libharfbuzz-8.2.1-alt1 sisyphus+329986.40.2.1 1695293822 installed <13>Sep 23 06:04:27 rpmi: libfreetype-2.13.2-alt1 sisyphus+328677.100.1.1 1693834346 installed <13>Sep 23 06:04:27 rpmi: libfontconfig1-2.14.2-alt8 sisyphus+328444.100.1.1 1693553407 installed <13>Sep 23 06:04:27 rpmi: fontconfig-2.14.2-alt8 sisyphus+328444.100.1.1 1693553407 installed Updating fonts cache: <29>Sep 23 06:04:28 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Sep 23 06:04:28 rpmi: libharfbuzz-icu-8.2.1-alt1 sisyphus+329986.40.2.1 1695293822 installed <13>Sep 23 06:04:28 rpmi: libharfbuzz-gobject-8.2.1-alt1 sisyphus+329986.40.2.1 1695293822 installed <13>Sep 23 06:04:28 rpmi: libX11-locales-3:1.8.6-alt1 sisyphus+323114.100.1.1 1686850054 installed <13>Sep 23 06:04:28 rpmi: libXdmcp-1.1.4-alt1 sisyphus+311188.1000.1.1 1670233860 installed <13>Sep 23 06:04:28 rpmi: libxcb-1.16-alt1 sisyphus+327325.200.1.1 1692276267 installed <13>Sep 23 06:04:28 rpmi: libX11-3:1.8.6-alt1 sisyphus+323114.100.1.1 1686850057 installed <13>Sep 23 06:04:28 rpmi: libXext-1.3.5-alt1 sisyphus+309285.100.1.1 1667212413 installed <13>Sep 23 06:04:28 rpmi: libXrender-0.9.11-alt1 sisyphus+308841.100.1.1 1666436131 installed <13>Sep 23 06:04:28 rpmi: libXfixes-6.0.0-alt1 sisyphus+284644.300.1.1 1630910333 installed <13>Sep 23 06:04:28 rpmi: libXcursor-1.2.1-alt1 sisyphus+297765.200.1.1 1649053934 installed <13>Sep 23 06:04:28 rpmi: libcairo-1:1.17.8-alt1 sisyphus+324101.100.2.1 1690287712 installed <13>Sep 23 06:04:28 rpmi: libXft-2.3.7-alt1 sisyphus+310164.100.1.1 1668680609 installed <13>Sep 23 06:04:28 rpmi: libXinerama-1.1.5-alt1 sisyphus+309287.100.1.1 1667213209 installed <13>Sep 23 06:04:29 rpmi: libxcb-devel-1.16-alt1 sisyphus+327325.200.1.1 1692276267 installed <13>Sep 23 06:04:29 rpmi: libX11-devel-3:1.8.6-alt1 sisyphus+323114.100.1.1 1686850057 installed <13>Sep 23 06:04:29 rpmi: libXrender-devel-0.9.11-alt1 sisyphus+308841.100.1.1 1666436131 installed <13>Sep 23 06:04:29 rpmi: libXext-devel-1.3.5-alt1 sisyphus+309285.100.1.1 1667212413 installed <13>Sep 23 06:04:29 rpmi: libharfbuzz-cairo-8.2.1-alt1 sisyphus+329986.40.2.1 1695293822 installed <13>Sep 23 06:04:29 rpmi: libXxf86vm-1.1.5-alt1 sisyphus+308663.1400.1.1 1666168534 installed <13>Sep 23 06:04:29 rpmi: libGLX-mesa-4:23.1.8-alt1 sisyphus+329998.100.1.3 1695296180 installed <13>Sep 23 06:04:29 rpmi: libGLX-7:1.6.0-alt2 sisyphus+321612.100.1.1 1684749008 installed <13>Sep 23 06:04:29 rpmi: libGL-7:1.6.0-alt2 sisyphus+321612.100.1.1 1684749008 installed <13>Sep 23 06:04:29 rpmi: libGLU-4:9.0.1-alt1 sisyphus+278350.100.1.2 1626174378 installed <13>Sep 23 06:04:29 rpmi: libfltk13-1.3.8-alt1 sisyphus+301656.100.1.1 1654794789 installed <13>Sep 23 06:04:29 rpmi: libgbm-4:23.1.8-alt1 sisyphus+329998.100.1.3 1695296180 installed <13>Sep 23 06:04:29 rpmi: libEGL-mesa-4:23.1.8-alt1 sisyphus+329998.100.1.3 1695296180 installed <13>Sep 23 06:04:29 rpmi: libEGL-7:1.6.0-alt2 sisyphus+321612.100.1.1 1684749008 installed <13>Sep 23 06:04:29 rpmi: libglvnd-devel-7:1.6.0-alt2 sisyphus+321612.100.1.1 1684749008 installed <13>Sep 23 06:04:29 rpmi: libGLU-devel-4:9.0.1-alt1 sisyphus+278350.100.1.2 1626174378 installed <13>Sep 23 06:04:29 rpmi: libmpdec3-2.5.1-alt3 sisyphus+314490.500.5.1 1675432033 installed <13>Sep 23 06:04:29 rpmi: libgdbm-1.8.3-alt10 sisyphus+278100.1600.1.1 1626059138 installed <13>Sep 23 06:04:29 rpmi: libb2-0.98.1-alt1_1 sisyphus+291614.100.1.1 1638962878 installed <13>Sep 23 06:04:29 rpmi: libp11-kit-1:0.24.1-alt2 sisyphus+324666.100.1.1 1689083450 installed <13>Sep 23 06:04:29 rpmi: libtasn1-4.19.0-alt3 sisyphus+327816.100.1.1 1692802618 installed <13>Sep 23 06:04:29 rpmi: rpm-macros-alternatives-0.5.2-alt2 sisyphus+315270.200.2.1 1676457367 installed <13>Sep 23 06:04:29 rpmi: alternatives-0.5.2-alt2 sisyphus+315270.200.2.1 1676457367 installed <13>Sep 23 06:04:29 rpmi: ca-certificates-2023.07.31-alt1 sisyphus+326137.200.1.1 1690809798 installed <13>Sep 23 06:04:29 rpmi: ca-trust-0.1.4-alt1 sisyphus+308690.100.1.1 1666182992 installed <13>Sep 23 06:04:29 rpmi: p11-kit-trust-1:0.24.1-alt2 sisyphus+324666.100.1.1 1689083450 installed <13>Sep 23 06:04:29 rpmi: libcrypto3-3.1.3-alt1 sisyphus+329935.40.3.2 1695159275 installed <13>Sep 23 06:04:29 rpmi: libssl3-3.1.3-alt1 sisyphus+329935.40.3.2 1695159275 installed <13>Sep 23 06:04:29 rpmi: python3-3.11.4-alt3 sisyphus+328191.1000.5.1 1693610619 installed <13>Sep 23 06:04:30 rpmi: python3-base-3.11.4-alt3 sisyphus+328191.1000.5.1 1693610619 installed <13>Sep 23 06:04:30 rpmi: glib2-devel-2.78.0-alt1 sisyphus+329802.100.1.1 1694991244 installed <13>Sep 23 06:04:30 rpmi: libcairo-devel-1:1.17.8-alt1 sisyphus+324101.100.2.1 1690287712 installed <13>Sep 23 06:04:30 rpmi: fontconfig-devel-2.14.2-alt8 sisyphus+328444.100.1.1 1693553407 installed <13>Sep 23 06:04:30 rpmi: libfreetype-devel-2.13.2-alt1 sisyphus+328677.100.1.1 1693834346 installed <13>Sep 23 06:04:30 rpmi: libharfbuzz-devel-8.2.1-alt1 sisyphus+329986.40.2.1 1695293822 installed <13>Sep 23 06:04:31 rpmi: libpython3-3.11.4-alt3 sisyphus+328191.1000.5.1 1693610619 installed <13>Sep 23 06:04:31 rpmi: python3-module-py3dephell-0.1.0-alt2 sisyphus+328191.600.5.1 1693609196 installed <13>Sep 23 06:04:31 rpmi: tests-for-installed-python3-pkgs-0.1.24-alt1 sisyphus+328191.700.5.1 1693609218 installed <13>Sep 23 06:04:31 rpmi: rpm-build-python3-0.1.24-alt1 sisyphus+328191.700.5.1 1693609218 installed <13>Sep 23 06:04:31 rpmi: python3-dev-3.11.4-alt3 sisyphus+328191.1000.5.1 1693610619 installed <13>Sep 23 06:04:31 rpmi: libXft-devel-2.3.7-alt1 sisyphus+310164.100.1.1 1668680609 installed <13>Sep 23 06:04:31 rpmi: libfltk-devel-1.3.8-alt1 sisyphus+301656.100.1.1 1654794789 installed <13>Sep 23 06:04:31 rpmi: libXcursor-devel-1.2.1-alt1 sisyphus+297765.200.1.1 1649053934 installed <13>Sep 23 06:04:31 rpmi: libXfixes-devel-6.0.0-alt1 sisyphus+284644.300.1.1 1630910333 installed <13>Sep 23 06:04:31 rpmi: libXinerama-devel-1.1.5-alt1 sisyphus+309287.100.1.1 1667213209 installed <13>Sep 23 06:04:31 rpmi: gcc-c++-13-alt1 sisyphus+323337.300.1.1 1687268227 installed <13>Sep 23 06:04:31 rpmi: libjpeg-devel-2:2.1.2-alt1.2 sisyphus+300827.100.2.1 1653916654 installed Building target platforms: i586 Building for target i586 Wrote: /usr/src/in/nosrpm/seaview-5.0.5-alt1.nosrc.rpm (w1.gzdio) Installing seaview-5.0.5-alt1.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.36928 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf seaview + echo 'Source #0 (seaview-5.0.5.tar.gz):' Source #0 (seaview-5.0.5.tar.gz): + /bin/gzip -dc /usr/src/RPM/SOURCES/seaview-5.0.5.tar.gz + /bin/tar -xf - + cd seaview + /bin/chmod -c -Rf u+rwX,go-w . + chmod -x addbootstrap.cxx align.cxx comlines.cxx concatenate.cxx custom.cxx least_squares_brl.cxx load_seq.cxx nexus.cxx pdf_or_ps.cxx pseudoterminal.cxx racnuc_fetch.cxx regions.cxx resource.cxx seaview.cxx statistics.cxx svg.cxx tbe.cxx threads.cxx treedraw.cxx treerecs_draw.cxx trees.cxx unrooted.cxx use_mase_files.cxx viewasprots.cxx win32_extras.cxx xfmatpt.cxx + chmod -x csrc/bionj.c csrc/dnapars.c csrc/lwl.c csrc/md5.c csrc/misc_acnuc.c csrc/parser.c csrc/parser.h csrc/phylip.c csrc/phylip.h csrc/phyml_util.c csrc/phyml_util.h csrc/protpars.c csrc/raa_acnuc.c csrc/raa_acnuc.h csrc/seq.c csrc/seq.h csrc/zsockr.c + sed -i 's|^\(CFLAGS.*\)|\1 -g -DFL_LIBRARY|' Makefile + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.36928 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd seaview + make -j16 make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF resource.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF concatenate.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF comlines.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF viewasprots.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF racnuc_fetch.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF pdf_or_ps.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF pseudoterminal.cxx pseudoterminal.cxx: In function 'int run_external_prog_in_pseudoterm(char*, const char*, const char*)': pseudoterminal.cxx:342:24: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 342 | freopen( (dialogfname ? dialogfname : slavename), "r", stdin); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pseudoterminal.cxx:343:24: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 343 | freopen(slavename, "a", stderr); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF load_seq.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF threads.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF custom.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF statistics.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF regions.cxx regions.cxx: In function 'int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)': regions.cxx:313:9: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 313 | system(cmd); | ~~~~~~^~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF least_squares_brl.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/parser.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF nexus.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF xfmatpt.cxx In function 'int really_close(FD_matpt*)', inlined from 'void exit_button_proc(Fl_Widget*, FD_matpt*)' at xfmatpt.cxx:898:18: xfmatpt.cxx:889:5: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq1' with nonzero offset 1 [-Wfree-nonheap-object] 889 | free(matpt->seq1 + 1); | ~~~~^~~~~~~~~~~~~~~~~ xfmatpt.cxx:890:5: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq2' with nonzero offset 1 [-Wfree-nonheap-object] 890 | free(matpt->seq2 + 1); | ~~~~^~~~~~~~~~~~~~~~~ xfmatpt.cxx: In function 'void show_dot_plot(char*, char*, char*, char*, int, int, int, void*)': xfmatpt.cxx:124:21: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq1' with nonzero offset 1 [-Wfree-nonheap-object] 124 | free(matpt->seq1+1); | ~~~~^~~~~~~~~~~~~~~ xfmatpt.cxx:125:21: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq2' with nonzero offset 1 [-Wfree-nonheap-object] 125 | free(matpt->seq2+1); | ~~~~^~~~~~~~~~~~~~~ xfmatpt.cxx: In function 'int really_close(FD_matpt*)': xfmatpt.cxx:889:5: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq1' with nonzero offset 1 [-Wfree-nonheap-object] 889 | free(matpt->seq1 + 1); | ~~~~^~~~~~~~~~~~~~~~~ xfmatpt.cxx:890:5: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq2' with nonzero offset 1 [-Wfree-nonheap-object] 890 | free(matpt->seq2 + 1); | ~~~~^~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/md5.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF tbe.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/zsockr.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF align.cxx align.cxx: In function 'void replace_stars(char*)': align.cxx:1302:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1302 | fread(all, 1, l, in); | ~~~~~^~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF svg.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF addbootstrap.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/misc_acnuc.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/bionj.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF unrooted.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/phyml_util.c csrc/phyml_util.c: In function 'Warn_And_Exit': csrc/phyml_util.c:47:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 47 | fscanf(stdin,"%c",&c); | ^~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/lwl.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF use_mase_files.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/dnapars.c csrc/dnapars.c: In function 'dnapars': csrc/dnapars.c:1685:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1685 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/protpars.c csrc/protpars.c: In function 'protpars': csrc/protpars.c:2097:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 2097 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF treerecs_draw.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/raa_acnuc.c In function 'fill_gfrag_buf', inlined from 'raa_gfrag' at csrc/raa_acnuc.c:599:8: csrc/raa_acnuc.c:581:39: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 581 | raa_current_db->gfrag_data.buffer[lu] = 0; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from csrc/raa_acnuc.c:1: csrc/raa_acnuc.h: In function 'raa_gfrag': csrc/raa_acnuc.h:34:14: note: at offset 10001 into destination object 'buffer' of size 10001 34 | char buffer[RAA_GFRAG_BSIZE + 1]; | ^~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF trees.cxx trees.cxx: In function 'void run_phyml_callback(Fl_Widget*, void*)': trees.cxx:1301:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1301 | fread(bootstrap_trees, l, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function 'void command_line_phylogeny(int, char**)': trees.cxx:2794:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2794 | fread(utree, s, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/phylip.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF seaview.cxx seaview.cxx: In function 'void delete_tmp_filename(const char*)': seaview.cxx:636:9: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 636 | system(fname); | ~~~~~~^~~~~~~ seaview.cxx: In function 'char* run_and_close_native_file_chooser(Fl_Native_File_Chooser*, int)': seaview.cxx:2899:45: warning: ignoring return value of 'int chdir(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2899 | if( *last_visited_directory )chdir(last_visited_directory); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF treedraw.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF FL/Fl_SVG_Image.cxx make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' gcc -c -O3 -Dunix -Icsrc csrc/seq.c make: Leaving directory '/usr/src/RPM/BUILD/seaview' make: Entering directory '/usr/src/RPM/BUILD/seaview' g++ -o seaview seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -ldl -lpthread -lz -Wl,-z,muldefs make: Leaving directory '/usr/src/RPM/BUILD/seaview' + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.66846 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/seaview-buildroot + : + /bin/rm -rf -- /usr/src/tmp/seaview-buildroot + PATH=/usr/libexec/rpm-build:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games + cd seaview + mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/seaview + mkdir -p /usr/src/tmp/seaview-buildroot/usr/bin + mkdir -p /usr/src/tmp/seaview-buildroot//usr/share/man/man1 + mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/applications/ + install -m 755 seaview /usr/src/tmp/seaview-buildroot//usr/bin + install -m 644 seaview.html /usr/src/tmp/seaview-buildroot/usr/share/seaview/ + install -m 644 /usr/src/RPM/SOURCES/seaview.desktop /usr/src/tmp/seaview-buildroot/usr/share/applications/ + mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/pixmaps/ + install -m 0644 -p seaview.xpm /usr/src/tmp/seaview-buildroot/usr/share/pixmaps/seaview.xpm + install -m 644 seaview.1 /usr/src/tmp/seaview-buildroot//usr/share/man/man1 + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/seaview-buildroot (auto) Verifying and fixing files in /usr/src/tmp/seaview-buildroot (binconfig,pkgconfig,libtool,desktop,gnuconfig) /usr/share/applications/seaview.desktop: performed minor cleanup: 6c6 < Icon=seaview.xpm --- > Icon=seaview Checking contents of files in /usr/src/tmp/seaview-buildroot/ (default) Compressing files in /usr/src/tmp/seaview-buildroot (auto) 056-debuginfo.brp: WARNING: debuginfo without debug sources. Verifying ELF objects in /usr/src/tmp/seaview-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) verify-elf: WARNING: ./usr/bin/seaview: uses non-LFS functions: fgetpos fopen freopen fsetpos mkstemp open Hardlinking identical .pyc and .opt-?.pyc files Executing(%check): /bin/sh -e /usr/src/tmp/rpm-tmp.66846 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd seaview + exit 0 Processing files: seaview-5.0.5-alt1 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.66846 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd seaview + DOCDIR=/usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.5 + export DOCDIR + rm -rf /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.5 + /bin/mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.5 + cp -prL seaview.1.xml example.nxs /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.5 + chmod -R go-w /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.5 + chmod -R a+rX /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-5.0.5 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.0oBEXJ find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,python3,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.hPtjfS find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) Requires: /lib/ld-linux.so.2, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.11), libc.so.6(GLIBC_2.15), libc.so.6(GLIBC_2.2), libc.so.6(GLIBC_2.2.1), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.34), libc.so.6(GLIBC_2.38), libc.so.6(GLIBC_2.4), libc.so.6(GLIBC_2.7), libfltk.so.2 >= set: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, libfltk_images.so.2 >= set:jfWg1JaebIlCT0Tk9Z0EM7, libgcc_s.so.1(GCC_3.0), libm.so.6(GLIBC_2.0), libm.so.6(GLIBC_2.1), libm.so.6(GLIBC_2.29), libstdc++.so.6(CXXABI_1.3), libstdc++.so.6(CXXABI_1.3.8), libstdc++.so.6(CXXABI_1.3.9), libstdc++.so.6(GLIBCXX_3.4), libstdc++.so.6(GLIBCXX_3.4.20), libstdc++.so.6(GLIBCXX_3.4.21), libstdc++.so.6(GLIBCXX_3.4.32), libz.so.1 >= set:khM4g6JBZuPIo4PSZj1, rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.w0aoMh Creating seaview-debuginfo package Processing files: seaview-debuginfo-5.0.5-alt1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.G813aT find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Ch6SJo find-requires: running scripts (debuginfo) Requires: seaview = 5.0.5-alt1, /usr/lib/debug/lib/ld-linux.so.2.debug, debug(libc.so.6), debug(libfltk.so.2), debug(libfltk_images.so.2), debug(libgcc_s.so.1), debug(libm.so.6), debug(libstdc++.so.6), debug(libz.so.1) Adding to seaview-debuginfo a strict dependency on seaview Wrote: /usr/src/RPM/RPMS/i586/seaview-5.0.5-alt1.i586.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/i586/seaview-debuginfo-5.0.5-alt1.i586.rpm (w2.lzdio) 29.55user 2.84system 0:08.99elapsed 360%CPU (0avgtext+0avgdata 75232maxresident)k 0inputs+0outputs (0major+549464minor)pagefaults 0swaps 3.24user 1.63system 0:23.15elapsed 21%CPU (0avgtext+0avgdata 124324maxresident)k 0inputs+0outputs (0major+244675minor)pagefaults 0swaps --- seaview-5.0.5-alt1.i586.rpm.repo 2021-12-13 03:56:05.000000000 +0000 +++ seaview-5.0.5-alt1.i586.rpm.hasher 2023-09-23 06:04:43.181500268 +0000 @@ -20,2 +20,3 @@ Requires: libc.so.6(GLIBC_2.34) +Requires: libc.so.6(GLIBC_2.38) Requires: libc.so.6(GLIBC_2.4) @@ -35,2 +36,3 @@ Requires: libstdc++.so.6(GLIBCXX_3.4.21) +Requires: libstdc++.so.6(GLIBCXX_3.4.32) Requires: libz.so.1 >= set:khM4g6JBZuPIo4PSZj1 @@ -39,3 +41,3 @@ Provides: seaview = 5.0.5-alt1:sisyphus+291878.100.1.1 -File: /usr/bin/seaview 100755 root:root 27fe9ba582fe0f54b7ca0475bb6c43b0 +File: /usr/bin/seaview 100755 root:root aa331abc5f16e5c4ac7b273e1a89c201 File: /usr/share/applications/seaview.desktop 100644 root:root 8245612f5c1c5c0af83c390b3f0b74e2 @@ -48,2 +50,2 @@ File: /usr/share/seaview/seaview.html 100644 root:root 80a242b5972590cac2d1ebf90957b92b -RPMIdentity: 3333f9b0b3d9ffbae73a997d6d32d79af0b06faa379ddd14d57e3065812b31fd1b37d8c6c0790a6a1acf5d7ddbca8b4a65880f217091b6500b1a695a750d8920 +RPMIdentity: f3328f325270fdc5241feb62796aa4b3975a3f7b523d3948fe16a9b2b3e1a89fd11b7214e4ae76e73928aab8c151f503c53ae8386bdac835601ecd33769ac0f6 --- seaview-debuginfo-5.0.5-alt1.i586.rpm.repo 2021-12-13 03:56:05.000000000 +0000 +++ seaview-debuginfo-5.0.5-alt1.i586.rpm.hasher 2023-09-23 06:04:43.260501701 +0000 @@ -1,4 +1,4 @@ -/usr/lib/debug/.build-id/73 40755 root:root -/usr/lib/debug/.build-id/73/a7c148e88bc227b0af807dc5490a3749b2b053 120777 root:root ../../../../bin/seaview -/usr/lib/debug/.build-id/73/a7c148e88bc227b0af807dc5490a3749b2b053.debug 120777 root:root ../../usr/bin/seaview.debug +/usr/lib/debug/.build-id/de 40755 root:root +/usr/lib/debug/.build-id/de/bb9f04e0c1fcd772a1543251700d202b9eab80 120777 root:root ../../../../bin/seaview +/usr/lib/debug/.build-id/de/bb9f04e0c1fcd772a1543251700d202b9eab80.debug 120777 root:root ../../usr/bin/seaview.debug /usr/lib/debug/usr/bin/seaview.debug 100644 root:root @@ -15,6 +15,6 @@ Provides: seaview-debuginfo = 5.0.5-alt1:sisyphus+291878.100.1.1 -File: /usr/lib/debug/.build-id/73 40755 root:root -File: /usr/lib/debug/.build-id/73/a7c148e88bc227b0af807dc5490a3749b2b053 120777 root:root ../../../../bin/seaview -File: /usr/lib/debug/.build-id/73/a7c148e88bc227b0af807dc5490a3749b2b053.debug 120777 root:root ../../usr/bin/seaview.debug -File: /usr/lib/debug/usr/bin/seaview.debug 100644 root:root 3c40b949ba9425df61736d9978487d3c -RPMIdentity: b0d975db4d95f8dd5ba4909363e1f3d31486eb16ec625814f53677c4dae0be2d04ecba0aed14e3cc6bc1ec23fedb2bf3d3ac411c11010c79395ba2afabeeaefa +File: /usr/lib/debug/.build-id/de 40755 root:root +File: /usr/lib/debug/.build-id/de/bb9f04e0c1fcd772a1543251700d202b9eab80 120777 root:root ../../../../bin/seaview +File: /usr/lib/debug/.build-id/de/bb9f04e0c1fcd772a1543251700d202b9eab80.debug 120777 root:root ../../usr/bin/seaview.debug +File: /usr/lib/debug/usr/bin/seaview.debug 100644 root:root d843d233089e9d1d49c194df92ad8d63 +RPMIdentity: 4972f8581c2b737b4ac5cd5b2293acd2749458a9c4db466b30e15345acc8e74e8ef251e05ad1ebf9996824b2b87a3231a5e39d2ce0ac79b1b3cacb956649c2b7