<86>May 29 14:50:34 userdel[1734423]: delete user 'rooter' <86>May 29 14:50:34 userdel[1734423]: removed group 'rooter' owned by 'rooter' <86>May 29 14:50:34 userdel[1734423]: removed shadow group 'rooter' owned by 'rooter' <86>May 29 14:50:34 groupadd[1734447]: group added to /etc/group: name=rooter, GID=705 <86>May 29 14:50:34 groupadd[1734447]: group added to /etc/gshadow: name=rooter <86>May 29 14:50:34 groupadd[1734447]: new group: name=rooter, GID=705 <86>May 29 14:50:34 useradd[1734454]: new user: name=rooter, UID=705, GID=705, home=/root, shell=/bin/bash <86>May 29 14:50:34 userdel[1734481]: delete user 'builder' <86>May 29 14:50:34 userdel[1734481]: removed group 'builder' owned by 'builder' <86>May 29 14:50:34 userdel[1734481]: removed shadow group 'builder' owned by 'builder' <86>May 29 14:50:34 groupadd[1734505]: group added to /etc/group: name=builder, GID=706 <86>May 29 14:50:34 groupadd[1734505]: group added to /etc/gshadow: name=builder <86>May 29 14:50:34 groupadd[1734505]: new group: name=builder, GID=706 <86>May 29 14:50:34 useradd[1734544]: new user: name=builder, UID=706, GID=706, home=/usr/src, shell=/bin/bash /usr/src/in/srpm/RasMol-2.7.5.2-alt5.src.rpm: license not found in '/usr/share/license' directory: GPL-like warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root <13>May 29 14:50:40 rpmi: xorg-proto-devel-2021.4-alt1 sisyphus+272146.100.1.1 1621424691 installed <13>May 29 14:50:40 rpmi: libXau-1.0.9-alt1 sisyphus+223149.200.2.1 1551268152 installed <13>May 29 14:50:40 rpmi: libCVector-1.0.3.1-alt2 1316809891 installed <13>May 29 14:50:40 rpmi: libquadmath0-10.2.1-alt3 sisyphus+267829.100.1.1 1615808579 installed <13>May 29 14:50:40 rpmi: libgfortran5-10.2.1-alt3 sisyphus+267829.100.1.1 1615808579 installed <13>May 29 14:50:40 rpmi: libCBFlib-0.9.2.3-alt3 sisyphus+269998.200.2.1 1618495167 installed <13>May 29 14:50:40 rpmi: libquadmath10-devel-10.2.1-alt3 sisyphus+267829.100.1.1 1615808579 installed <13>May 29 14:50:40 rpmi: libCVector-devel-1.0.3.1-alt2 1316809891 installed <13>May 29 14:50:40 rpmi: libNearTree-5.1.1-alt1 sisyphus+220437.100.1.1 1549114851 installed <13>May 29 14:50:40 rpmi: libXau-devel-1.0.9-alt1 sisyphus+223149.200.2.1 1551268152 installed <13>May 29 14:50:40 rpmi: gcc-fortran-common-1.4.27-alt1 sisyphus+262033.600.7.2 1607340230 installed <13>May 29 14:50:40 rpmi: libgfortran10-devel-10.2.1-alt3 sisyphus+267829.100.1.1 1615808579 installed <13>May 29 14:50:40 rpmi: libX11-locales-3:1.7.1-alt1 sisyphus+272146.200.1.1 1621424771 installed <13>May 29 14:50:40 rpmi: libXdmcp-1.1.3-alt1 sisyphus+225206.600.1.2 1552949353 installed <13>May 29 14:50:40 rpmi: libxcb-1.14-alt1 sisyphus+247358.200.1.3 1583854228 installed <13>May 29 14:50:40 rpmi: libX11-3:1.7.1-alt1 sisyphus+272146.200.1.1 1621424825 installed <13>May 29 14:50:40 rpmi: libXext-1.3.4-alt1 sisyphus+225206.700.1.2 1552949429 installed <13>May 29 14:50:40 rpmi: libXi-1.7.10-alt1 sisyphus+232786.300.1.1 1561106978 installed <13>May 29 14:50:40 rpmi: libXfixes-5.0.3-alt1 sisyphus+226736.100.2.2 1554614841 installed <13>May 29 14:50:41 rpmi: libxcb-devel-1.14-alt1 sisyphus+247358.200.1.3 1583854228 installed <13>May 29 14:50:41 rpmi: libX11-devel-3:1.7.1-alt1 sisyphus+272146.200.1.1 1621424825 installed <13>May 29 14:50:41 rpmi: libXext-devel-1.3.4-alt1 sisyphus+225206.700.1.2 1552949429 installed <13>May 29 14:50:41 rpmi: libXfixes-devel-5.0.3-alt1 sisyphus+226736.100.2.2 1554614841 installed <13>May 29 14:50:41 rpmi: libCQRlib-1.1.2-alt2 1316809838 installed <13>May 29 14:50:41 rpmi: libCQRlib-devel-1.1.2-alt2 1316809838 installed <13>May 29 14:50:41 rpmi: libXi-devel-1.7.10-alt1 sisyphus+232786.300.1.1 1561106978 installed <13>May 29 14:50:41 rpmi: libgfortran-devel-10-alt1 sisyphus+263054.200.3.1 1607517515 installed <13>May 29 14:50:41 rpmi: libNearTree-devel-5.1.1-alt1 sisyphus+220437.100.1.1 1549114851 installed <13>May 29 14:50:42 rpmi: libCBFlib-devel-0.9.2.3-alt3 sisyphus+269998.200.2.1 1618495167 installed <13>May 29 14:50:42 rpmi: xorg-cf-files-1.0.6-alt1 1453137637 installed <13>May 29 14:50:42 rpmi: imake-1.0.7-alt3 1518797773 installed Building target platforms: i586 Building for target i586 Wrote: /usr/src/in/nosrpm/RasMol-2.7.5.2-alt5.nosrc.rpm (w1.gzdio) Installing RasMol-2.7.5.2-alt5.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.11135 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf RasMol-2.7.5.2 + echo 'Source #0 (rasmol-2.7.5.2-13May11.tar.gz):' Source #0 (rasmol-2.7.5.2-13May11.tar.gz): + /bin/gzip -dc /usr/src/RPM/SOURCES/rasmol-2.7.5.2-13May11.tar.gz + /bin/tar -xf - + cd RasMol-2.7.5.2 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #0 (RasMol-2.7.5-gentoo-bundled-lib.patch):' Patch #0 (RasMol-2.7.5-gentoo-bundled-lib.patch): + /usr/bin/patch -p1 patching file src/Imakefile patching file src/Makefile.in + sed -i 's,^#include \(<\|"\)cbf,#include \1cbf/cbf,' src/cif.h src/maps.c + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.11135 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd RasMol-2.7.5.2 + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic' + pushd src ~/RPM/BUILD/RasMol-2.7.5.2/src ~/RPM/BUILD/RasMol-2.7.5.2 + xmkmf imake -DUseInstalled -I/usr/share/X11/config In file included from /usr/share/X11/config/Imake.tmpl:2145, from Imakefile.c:34: /usr/share/X11/config/X11.rules:39: warning: "XBinDir" redefined 39 | # define XBinDir $(XPROJECTROOT)/bin | In file included from /usr/share/X11/config/site.def:155, from /usr/share/X11/config/Imake.tmpl:116, from Imakefile.c:34: /usr/share/X11/config/host.def:14: note: this is the location of the previous definition 14 | #define XBinDir /usr/bin | In file included from /usr/share/X11/config/Imake.tmpl:2145, from Imakefile.c:34: /usr/share/X11/config/X11.rules:47: warning: "XUsrLibDirPath" redefined 47 | # define XUsrLibDirPath $(USRLIBDIR):$(XPROJECTROOT)/lib | In file included from /usr/share/X11/config/site.def:155, from /usr/share/X11/config/Imake.tmpl:116, from Imakefile.c:34: /usr/share/X11/config/host.def:16: note: this is the location of the previous definition 16 | #define XUsrLibDirPath /usr/lib | + subst s/-mcpu=i686/-mtune=i686/ Makefile + make clean rasmol DEPTHDEF=-DEIGHTBIT make: Entering directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from rasmol.c:203: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ rasmol.c:1170:15: warning: 'DetermineRasMolPath' defined but not used [-Wunused-function] 1170 | static size_t DetermineRasMolPath( char * rpath, size_t maxlen) { | ^~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from molecule.c:220: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ molecule.c: In function 'CreateSurfaceBonds': molecule.c:2152:27: warning: variable 'dz' set but not used [-Wunused-but-set-variable] 2152 | register Long dx, dy, dz; | ^~ molecule.c:2152:23: warning: variable 'dy' set but not used [-Wunused-but-set-variable] 2152 | register Long dx, dy, dz; | ^~ molecule.c:2152:19: warning: variable 'dx' set but not used [-Wunused-but-set-variable] 2152 | register Long dx, dy, dz; | ^~ At top level: molecule.c:1722:13: warning: 'TestSurface' defined but not used [-Wunused-function] 1722 | static void TestSurface( RAtom __far *sptr, RAtom __far *dptr ) | ^~~~~~~~~~~ In file included from /usr/include/string.h:532, from molecule.c:233: In function 'strncat', inlined from 'ReviseTitle' at molecule.c:377:9: /usr/include/bits/string_fortified.h:122:10: warning: '__builtin___strncat_chk' output may be truncated copying 40 bytes from a string of length 1023 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'ReviseTitle' at molecule.c:374:7: /usr/include/bits/string_fortified.h:122:10: warning: '__builtin___strncat_chk' output may be truncated copying 10 bytes from a string of length 79 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'ReviseTitle' at molecule.c:382:9: /usr/include/bits/string_fortified.h:122:10: warning: '__builtin___strncat_chk' output may be truncated copying between 0 and 58 bytes from a string of length 79 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from abstree.c:81: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cmndline.c:82: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cmndline.c: In function 'ProcessMouseMove': cmndline.c:929:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 929 | for (index=0; index<10; index++) | ^~~ cmndline.c:931:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 931 | SaveQuat.w = DialQRot.w; | ^~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from command.c:91: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ command.c: In function 'Find_Symbol_Definition': command.c:1072:18: warning: variable 'prevsymbol' set but not used [-Wunused-but-set-variable] 1072 | Symbol __far * prevsymbol; | ^~~~~~~~~~ command.c: In function 'PlayMovieFrame': command.c:1493:8: warning: variable 'checkfile' set but not used [-Wunused-but-set-variable] 1493 | int checkfile; | ^~~~~~~~~ command.c: In function 'ParseExpression': command.c:2215:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2215 | case(SheetTok): if( Info.laddercount < 0 ) | ^~ command.c:2217:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2217 | pred = PredSheet; | ^~~~ command.c:2219:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2219 | case(TurnTok): if( Info.turncount < 0 ) | ^~ command.c:2221:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2221 | pred = PredTurn; | ^~~~ command.c:2223:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2223 | case(CystineTok): if( Info.ssbondcount < 0 ) | ^~ command.c:2225:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2225 | pred = PredCystine; | ^~~~ command.c:2227:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2227 | case(CisBondedTok):if( Info.cisbondcount<0 ) | ^~ command.c:2229:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2229 | pred = PredCisBond; | ^~~~ command.c:2328:31: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2328 | case('-'): if( NextIf(NumberTok,ErrNotNum) ) | ^~ command.c:2330:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2330 | return( ParseRange(True) ); | ^~~~~~ command.c: In function 'ReadAtomSelection': command.c:4261:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 4261 | for( QAtom=QGroup->alist; QAtom; QAtom=QAtom->anext ) | ^~~ command.c:4263:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 4263 | SelectCount = 0; | ^~~~~~~~~~~ command.c:4279:4: warning: value computed is not used [-Wunused-value] 4279 | *TokenPtr--; | ^~~~~~~~~~~ command.c:4296:6: warning: value computed is not used [-Wunused-value] 4296 | *TokenPtr--; | ^~~~~~~~~~~ command.c:4337:13: warning: value computed is not used [-Wunused-value] 4337 | *TokenPtr++; | ^~~~~~~~~~~ command.c: In function 'ApplyMapAtomSelection': command.c:4752:12: warning: unused variable 'visits' [-Wunused-variable] 4752 | size_t visits; | ^~~~~~ command.c: In function 'ExecuteCommandOne': command.c:7488:27: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 7488 | case(ResetTok): for( i=0; i<10; i++ ) | ^~~ command.c:7490:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 7490 | ReDrawFlag |= RFDials; | ^~~~~~~~~~ command.c:7501:27: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 7501 | case(HelpTok): if( !HelpFileName ) | ^~ command.c:7503:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 7503 | if( HelpInfo ) | ^~ command.c: In function 'ExecuteIPCCommand': command.c:7964:16: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 7964 | } else if( *ptr=='[' ) | ^~ command.c:7967:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 7967 | if( len < MAXBUFFLEN-1 ) | ^~ At top level: command.c:902:12: warning: 'Define_Symbol' defined but not used [-Wunused-function] 902 | static int Define_Symbol(const char __far * string, const char __far * definition) { | ^~~~~~~~~~~~~ command.c: In function 'ApplyMapShow': command.c:5365:123: warning: ' ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] 5365 | sprintf(buffer," distance to selected van der Waals surface:\n mean %#g, min %#g, max %#g, esd %#g\n", | ^~ In file included from /usr/include/stdio.h:866, from command.c:118: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c:5375:123: warning: ' ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] 5375 | sprintf(buffer," distance to selected Lee-Richards surface:\n mean %#g, min %#g, max %#g, esd %#g\n", | ^~ In file included from /usr/include/stdio.h:866, from command.c:118: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c: In function 'ExecuteCommandOne.part.0': command.c:5906:60: warning: '%g' directive writing between 1 and 13 bytes into a region of size between 6 and 18 [-Wformat-overflow=] 5906 | sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); | ^~ command.c:5906:36: note: assuming directive output of 12 bytes 5906 | sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from command.c:118: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 25 and 49 bytes into a destination of size 40 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from transfor.c:198: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ transfor.c: In function 'SetVanWaalRadius': transfor.c:559:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 559 | if( (ptr->irad)+iProbeRad>MaxAtomRadius ) | ^~ transfor.c:561:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 561 | ptr->flag |= ExpandFlag; | ^~~ transfor.c:563:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 563 | if( ptr->irad>MaxAtomRadius ) | ^~ transfor.c:565:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 565 | ptr->flag &= ~ExpandFlag; | ^~~ transfor.c: In function 'ColourPointAttrib': transfor.c:2282:33: warning: variable 'result' set but not used [-Wunused-but-set-variable] 2282 | register int i,shade,nshade,result; | ^~~~~~ transfor.c: In function 'StructColourAttrib': transfor.c:3064:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 3064 | if( !Database ) | ^~ transfor.c:3066:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 3066 | ColourBondNone(); | ^~~~~~~~~~~~~~ transfor.c: In function 'ScaleColourMap': transfor.c:1702:17: warning: array subscript 15 is above array bounds of 'ShadeRef[15]' [-Warray-bounds] 1702 | { ScaleRef[i].r = 0; | ~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: while referencing 'ScaleRef' 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ transfor.c:1703:17: warning: array subscript 15 is above array bounds of 'ShadeRef[15]' [-Warray-bounds] 1703 | ScaleRef[i].g = 0; | ~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: while referencing 'ScaleRef' 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ transfor.c:1704:17: warning: array subscript 15 is above array bounds of 'ShadeRef[15]' [-Warray-bounds] 1704 | ScaleRef[i].b = 255; | ~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: while referencing 'ScaleRef' 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ transfor.c:1705:17: warning: array subscript 15 is above array bounds of 'ShadeRef[15]' [-Warray-bounds] 1705 | ScaleRef[i].shade = 0; | ~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: while referencing 'ScaleRef' 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ transfor.c:1706:17: warning: array subscript 15 is above array bounds of 'ShadeRef[15]' [-Warray-bounds] 1706 | ScaleRef[i].col = 0; | ~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: while referencing 'ScaleRef' 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from render.c:189: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ render.c: In function 'PickAtoms': render.c:2076:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2076 | if( !QAtom ) | ^~ render.c:2079:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2079 | if( PickMode==PickCentr && shift ) | ^~ render.c:2173:15: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 2173 | } else | ^~~~ render.c:2175:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 2175 | QAtom->label = label; | ^~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from repres.c:234: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ repres.c: In function 'TestSolventDot': repres.c:987:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 987 | if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; | ^~ repres.c:987:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 987 | if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; | ^~ repres.c:988:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 988 | if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; | ^~ repres.c:988:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; | ^~ repres.c:989:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 989 | if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; | ^~ repres.c:989:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 989 | if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; | ^~ repres.c: In function 'CalculateSurface': repres.c:1113:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 1113 | if( !Database ) | ^~ repres.c:1116:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1116 | DotCount = density; | ^~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from pixutils.c:183: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pixutils.c: In function 'ClipDashLine': pixutils.c:645:23: warning: variable 'ca' set but not used [-Wunused-but-set-variable] 645 | register Pixel c, ca, mid; | ^~ pixutils.c: In function 'DrawCircle': pixutils.c:2606:6: warning: variable 'updown' set but not used [-Wunused-but-set-variable] 2606 | int updown, ifirst; | ^~~~~~ pixutils.c: In function 'DrawCylinderCaps': pixutils.c:2986:21: warning: variable 'alts' set but not used [-Wunused-but-set-variable] 2986 | register int p, alts, altc; | ^~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from outfile.c:170: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ outfile.c: In function 'WriteVectDots': outfile.c:1998:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] 1998 | register int temp, tump; | ^~~~ outfile.c:1998:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] 1998 | register int temp, tump; | ^~~~ outfile.c: In function 'WriteVectMapPoints': outfile.c:2038:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] 2038 | register int temp, tump; | ^~~~ outfile.c:2038:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] 2038 | register int temp, tump; | ^~~~ outfile.c: In function 'R3DSphere': outfile.c:2601:24: warning: variable 'z1' set but not used [-Wunused-but-set-variable] 2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/ | ^~ outfile.c:2601:20: warning: variable 'y1' set but not used [-Wunused-but-set-variable] 2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/ | ^~ outfile.c:2601:16: warning: variable 'x1' set but not used [-Wunused-but-set-variable] 2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/ | ^~ outfile.c: In function 'R3DStrandRibbon': outfile.c:2956:28: warning: variable 'qsz' set but not used [-Wunused-but-set-variable] 2956 | register int qsx, qsy, qsz; | ^~~ At top level: outfile.c:2082:13: warning: 'WriteVectMapBonds' defined but not used [-Wunused-function] 2082 | static void WriteVectMapBonds( void) { | ^~~~~~~~~~~~~~~~~ outfile.c: In function 'WriteR3DFile': outfile.c:2871:26: warning: '%s' directive writing up to 79 bytes into a region of size 22 [-Wformat-overflow=] 2871 | sprintf((char *)name,"%s",buffer); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:866, from outfile.c:191: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 1 and 80 bytes into a destination of size 22 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from script.c:164: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ script.c:2342:13: warning: 'WriteVRMLLine' defined but not used [-Wunused-function] 2342 | static void WriteVRMLLine( int src, int dst, int shade, int *flag ) | ^~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from infile.c:196: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ infile.c: In function 'ApplyBondInfo': infile.c:671:14: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 671 | for(aptr2=group2->alist; aptr2; aptr2=aptr2->anext) | ^~~ infile.c:696:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 696 | if (AtomNum1) break; | ^~ infile.c: In function 'LoadXYZMolecule': infile.c:1365:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 1365 | if( !FetchRecord(DataFile,Record) ) | ^~ infile.c:1367:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1367 | xpos = ypos = zpos = 0.0; | ^~~~ infile.c: In function 'LoadCIFMolecule': infile.c:2210:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2210 | if (!cif_datablock_name (cif, &dbname)) | ^~ infile.c:2212:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2212 | Info.moleculename[55] = '\0'; | ^~~~ infile.c:3232:13: warning: variable 'oNMRModel' set but not used [-Wunused-but-set-variable] 3232 | int oNMRModel; | ^~~~~~~~~ infile.c: In function 'LoadMDLMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadXYZMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadMol2Molecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadAlchemyMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadCharmmMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadMOPACMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadMacroModelMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ In file included from /usr/include/string.h:532, from infile.c:198: In function 'strncpy', inlined from 'ConvertNames' at infile.c:2095:7: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'ConvertNames' at infile.c:2097:7: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 3 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:2470:9: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 5 bytes from a string of length 5 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:2591:38: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 5 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:2624:13: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:2986:9: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 5 bytes from a string of length 6 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:3001:9: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 5 bytes from a string of length 6 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:3004:34: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 5 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:3005:34: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 5 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:3411:46: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 9 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:3444:25: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ infile.c: In function 'LoadPDBMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from tokens.c:194: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_fract.c:197: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif.o cif.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif.c:278: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_ctonum.o cif_ctonum.c cif_ctonum.c:198: warning: "_USE_RASMOL_H_" redefined 198 | #define _USE_RASMOL_H_ | : note: this is the location of the previous definition In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_ctonum.c:200: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_stx.o cif_stx.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from cif_stx.c:227: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o multiple.o multiple.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from multiple.c:225: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ multiple.c: In function 'DrawMoleculeList': multiple.c:664:45: warning: '%s' directive output truncated writing between 28 and 2147483645 bytes into a region of size between 25 and 26 [-Wformat-truncation=] 664 | snprintf(buf, MAX_MOLNAME-4, "%d. %s", i+1, s); | ^~ In file included from /usr/include/stdio.h:866, from multiple.c:248: /usr/include/bits/stdio2.h:70:10: note: '__builtin___snprintf_chk' output between 32 and 2147483650 bytes into a destination of size 29 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o vector.o vector.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from vector.c:159: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o wbrotate.o wbrotate.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from wbrotate.c:201: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from langsel_unix.c:114: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ langsel_unix.c: In function 'SwitchLang': langsel_unix.c:2347:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2347 | if (Interactive) | ^~ langsel_unix.c:2349:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2349 | if (Language != lang) { | ^~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o maps.o maps.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from maps.c:81: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ maps.c: In function 'SaveMapFile': maps.c:429:55: warning: variable 'fcmapmask_zbase' set but not used [-Wunused-but-set-variable] 429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; | ^~~~~~~~~~~~~~~ maps.c:429:36: warning: variable 'fcmapmask_ybase' set but not used [-Wunused-but-set-variable] 429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; | ^~~~~~~~~~~~~~~ maps.c:429:16: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] 429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; | ^~~~~~~~~~~~~~~ maps.c:428:48: warning: variable 'fcmap_zbase' set but not used [-Wunused-but-set-variable] 428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; | ^~~~~~~~~~~ maps.c:428:32: warning: variable 'fcmap_ybase' set but not used [-Wunused-but-set-variable] 428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; | ^~~~~~~~~~~ maps.c:428:16: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] 428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; | ^~~~~~~~~~~ maps.c: In function 'LoadCBFMapFile': maps.c:1758:12: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] 1758 | double fcmapmask_xbase, fcmapmask_ybase, fcmapmask_zbase; | ^~~~~~~~~~~~~~~ maps.c:1757:12: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] 1757 | double fcmap_xbase, fcmap_ybase, fcmap_zbase; | ^~~~~~~~~~~ maps.c:1756:12: warning: variable 'ocmapmask_xbase' set but not used [-Wunused-but-set-variable] 1756 | double ocmapmask_xbase, ocmapmask_ybase, ocmapmask_zbase; | ^~~~~~~~~~~~~~~ maps.c:1755:12: warning: variable 'ocmap_xbase' set but not used [-Wunused-but-set-variable] 1755 | double ocmap_xbase, ocmap_ybase, ocmap_zbase; | ^~~~~~~~~~~ maps.c:1754:12: warning: variable 'mapmask_xbase' set but not used [-Wunused-but-set-variable] 1754 | Long mapmask_xbase, mapmask_ybase, mapmask_zbase; | ^~~~~~~~~~~~~ maps.c:1753:12: warning: variable 'map_xbase' set but not used [-Wunused-but-set-variable] 1753 | Long map_xbase, map_ybase, map_zbase; | ^~~~~~~~~ maps.c: In function 'LoadCCP4MapFile': maps.c:2988:9: warning: variable 'rawelsize' set but not used [-Wunused-but-set-variable] 2988 | int rawelsize; | ^~~~~~~~~ In file included from maps.c:96: maps.c: In function 'map_points': maps.c:4575:42: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] 4575 | MapPointm2o(map,mp,gradient); | ^~~~~~~~ maps.h:187:10: note: in definition of macro 'MapPointm2o' 187 | if (gradient) { \ | ^~~~~~~~ maps.c:4598:44: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] 4598 | MapPointm2o(map,mp,gradient); | ^~~~~~~~ maps.h:187:10: note: in definition of macro 'MapPointm2o' 187 | if (gradient) { \ | ^~~~~~~~ maps.c:4399:12: warning: variable 'koffsets' set but not used [-Wunused-but-set-variable] 4399 | Long koffsets[3][2]; /* The offsets back to the prior cells */ | ^~~~~~~~ maps.c:4398:11: warning: variable 'odirs' set but not used [-Wunused-but-set-variable] 4398 | int odirs[3][2]; /* {Y,Z}, {Z,X}, {X,Y} */ | ^~~~~ maps.c:4396:39: warning: variable 'havebody' set but not used [-Wunused-but-set-variable] 4396 | int haveedges[3], havefaces[3], havebody; | ^~~~~~~~ maps.c: In function 'SaveMapFile': maps.c:394:51: warning: 'mapinfo' may be used uninitialized in this function [-Wmaybe-uninitialized] 394 | cbf_failnez (cbf_set_value(cbf,mapinfo->MapFile)) | ^~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o x11win.o x11win.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from x11win.c:232: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/string.h:532, from x11win.c:234: In function 'strncpy', inlined from 'RasOpenFonts' at x11win.c:811:9: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin___strncpy_chk' specified bound depends on the length of the source argument [-Wstringop-overflow=] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x11win.c: In function 'RasOpenFonts': x11win.c:809:29: note: length computed here 809 | if (!MenuFont && (kl=strlen(menufonts))> 0 ) { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:532, from x11win.c:234: In function 'strncpy', inlined from 'RasOpenFonts' at x11win.c:829:9: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin___strncpy_chk' specified bound depends on the length of the source argument [-Wstringop-overflow=] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x11win.c: In function 'RasOpenFonts': x11win.c:827:29: note: length computed here 827 | if (!MenuFont && (kl=strlen(menufonts))> 0) { | ^~~~~~~~~~~~~~~~~ rm -f rasmol gcc -m32 -o rasmol -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -L/usr/lib -L/usr/lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -lcbf -lCQRlib -lCVector -lCNearTree -lgfortran make: Leaving directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' + mv rasmol rasmol-8bpp + make clean rasmol DEPTHDEF=-DSIXTEENBIT make: Entering directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from rasmol.c:203: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ rasmol.c:1170:15: warning: 'DetermineRasMolPath' defined but not used [-Wunused-function] 1170 | static size_t DetermineRasMolPath( char * rpath, size_t maxlen) { | ^~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from molecule.c:220: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ molecule.c: In function 'CreateSurfaceBonds': molecule.c:2152:27: warning: variable 'dz' set but not used [-Wunused-but-set-variable] 2152 | register Long dx, dy, dz; | ^~ molecule.c:2152:23: warning: variable 'dy' set but not used [-Wunused-but-set-variable] 2152 | register Long dx, dy, dz; | ^~ molecule.c:2152:19: warning: variable 'dx' set but not used [-Wunused-but-set-variable] 2152 | register Long dx, dy, dz; | ^~ At top level: molecule.c:1722:13: warning: 'TestSurface' defined but not used [-Wunused-function] 1722 | static void TestSurface( RAtom __far *sptr, RAtom __far *dptr ) | ^~~~~~~~~~~ In file included from /usr/include/string.h:532, from molecule.c:233: In function 'strncat', inlined from 'ReviseTitle' at molecule.c:377:9: /usr/include/bits/string_fortified.h:122:10: warning: '__builtin___strncat_chk' output may be truncated copying 40 bytes from a string of length 1023 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'ReviseTitle' at molecule.c:374:7: /usr/include/bits/string_fortified.h:122:10: warning: '__builtin___strncat_chk' output may be truncated copying 10 bytes from a string of length 79 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'ReviseTitle' at molecule.c:382:9: /usr/include/bits/string_fortified.h:122:10: warning: '__builtin___strncat_chk' output may be truncated copying between 0 and 58 bytes from a string of length 79 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from abstree.c:81: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cmndline.c:82: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cmndline.c: In function 'ProcessMouseMove': cmndline.c:929:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 929 | for (index=0; index<10; index++) | ^~~ cmndline.c:931:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 931 | SaveQuat.w = DialQRot.w; | ^~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from command.c:91: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ command.c: In function 'Find_Symbol_Definition': command.c:1072:18: warning: variable 'prevsymbol' set but not used [-Wunused-but-set-variable] 1072 | Symbol __far * prevsymbol; | ^~~~~~~~~~ command.c: In function 'PlayMovieFrame': command.c:1493:8: warning: variable 'checkfile' set but not used [-Wunused-but-set-variable] 1493 | int checkfile; | ^~~~~~~~~ command.c: In function 'ParseExpression': command.c:2215:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2215 | case(SheetTok): if( Info.laddercount < 0 ) | ^~ command.c:2217:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2217 | pred = PredSheet; | ^~~~ command.c:2219:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2219 | case(TurnTok): if( Info.turncount < 0 ) | ^~ command.c:2221:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2221 | pred = PredTurn; | ^~~~ command.c:2223:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2223 | case(CystineTok): if( Info.ssbondcount < 0 ) | ^~ command.c:2225:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2225 | pred = PredCystine; | ^~~~ command.c:2227:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2227 | case(CisBondedTok):if( Info.cisbondcount<0 ) | ^~ command.c:2229:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2229 | pred = PredCisBond; | ^~~~ command.c:2328:31: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2328 | case('-'): if( NextIf(NumberTok,ErrNotNum) ) | ^~ command.c:2330:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2330 | return( ParseRange(True) ); | ^~~~~~ command.c: In function 'ReadAtomSelection': command.c:4261:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 4261 | for( QAtom=QGroup->alist; QAtom; QAtom=QAtom->anext ) | ^~~ command.c:4263:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 4263 | SelectCount = 0; | ^~~~~~~~~~~ command.c:4279:4: warning: value computed is not used [-Wunused-value] 4279 | *TokenPtr--; | ^~~~~~~~~~~ command.c:4296:6: warning: value computed is not used [-Wunused-value] 4296 | *TokenPtr--; | ^~~~~~~~~~~ command.c:4337:13: warning: value computed is not used [-Wunused-value] 4337 | *TokenPtr++; | ^~~~~~~~~~~ command.c: In function 'ApplyMapAtomSelection': command.c:4752:12: warning: unused variable 'visits' [-Wunused-variable] 4752 | size_t visits; | ^~~~~~ command.c: In function 'ExecuteCommandOne': command.c:7488:27: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 7488 | case(ResetTok): for( i=0; i<10; i++ ) | ^~~ command.c:7490:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 7490 | ReDrawFlag |= RFDials; | ^~~~~~~~~~ command.c:7501:27: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 7501 | case(HelpTok): if( !HelpFileName ) | ^~ command.c:7503:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 7503 | if( HelpInfo ) | ^~ command.c: In function 'ExecuteIPCCommand': command.c:7964:16: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 7964 | } else if( *ptr=='[' ) | ^~ command.c:7967:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 7967 | if( len < MAXBUFFLEN-1 ) | ^~ At top level: command.c:902:12: warning: 'Define_Symbol' defined but not used [-Wunused-function] 902 | static int Define_Symbol(const char __far * string, const char __far * definition) { | ^~~~~~~~~~~~~ command.c: In function 'ApplyMapShow': command.c:5365:123: warning: ' ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] 5365 | sprintf(buffer," distance to selected van der Waals surface:\n mean %#g, min %#g, max %#g, esd %#g\n", | ^~ In file included from /usr/include/stdio.h:866, from command.c:118: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c:5375:123: warning: ' ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] 5375 | sprintf(buffer," distance to selected Lee-Richards surface:\n mean %#g, min %#g, max %#g, esd %#g\n", | ^~ In file included from /usr/include/stdio.h:866, from command.c:118: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c: In function 'ExecuteCommandOne.part.0': command.c:5906:60: warning: '%g' directive writing between 1 and 13 bytes into a region of size between 6 and 18 [-Wformat-overflow=] 5906 | sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); | ^~ command.c:5906:36: note: assuming directive output of 12 bytes 5906 | sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from command.c:118: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 25 and 49 bytes into a destination of size 40 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from transfor.c:198: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ transfor.c: In function 'SetVanWaalRadius': transfor.c:559:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 559 | if( (ptr->irad)+iProbeRad>MaxAtomRadius ) | ^~ transfor.c:561:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 561 | ptr->flag |= ExpandFlag; | ^~~ transfor.c:563:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 563 | if( ptr->irad>MaxAtomRadius ) | ^~ transfor.c:565:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 565 | ptr->flag &= ~ExpandFlag; | ^~~ transfor.c: In function 'ColourPointAttrib': transfor.c:2282:33: warning: variable 'result' set but not used [-Wunused-but-set-variable] 2282 | register int i,shade,nshade,result; | ^~~~~~ transfor.c: In function 'StructColourAttrib': transfor.c:3064:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 3064 | if( !Database ) | ^~ transfor.c:3066:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 3066 | ColourBondNone(); | ^~~~~~~~~~~~~~ transfor.c: In function 'ScaleColourMap': transfor.c:1702:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' [-Warray-bounds] 1702 | { ScaleRef[i].r = 0; | ~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: while referencing 'ScaleRef' 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ transfor.c:1703:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' [-Warray-bounds] 1703 | ScaleRef[i].g = 0; | ~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: while referencing 'ScaleRef' 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ transfor.c:1704:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' [-Warray-bounds] 1704 | ScaleRef[i].b = 255; | ~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: while referencing 'ScaleRef' 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ transfor.c:1705:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' [-Warray-bounds] 1705 | ScaleRef[i].shade = 0; | ~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: while referencing 'ScaleRef' 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ transfor.c:1706:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' [-Warray-bounds] 1706 | ScaleRef[i].col = 0; | ~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: while referencing 'ScaleRef' 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from render.c:189: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ render.c: In function 'PickAtoms': render.c:2076:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2076 | if( !QAtom ) | ^~ render.c:2079:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2079 | if( PickMode==PickCentr && shift ) | ^~ render.c:2173:15: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 2173 | } else | ^~~~ render.c:2175:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 2175 | QAtom->label = label; | ^~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from repres.c:234: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ repres.c: In function 'TestSolventDot': repres.c:987:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 987 | if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; | ^~ repres.c:987:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 987 | if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; | ^~ repres.c:988:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 988 | if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; | ^~ repres.c:988:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; | ^~ repres.c:989:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 989 | if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; | ^~ repres.c:989:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 989 | if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; | ^~ repres.c: In function 'CalculateSurface': repres.c:1113:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 1113 | if( !Database ) | ^~ repres.c:1116:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1116 | DotCount = density; | ^~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from pixutils.c:183: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pixutils.c: In function 'ClipDashLine': pixutils.c:645:23: warning: variable 'ca' set but not used [-Wunused-but-set-variable] 645 | register Pixel c, ca, mid; | ^~ pixutils.c: In function 'DrawCircle': pixutils.c:2606:6: warning: variable 'updown' set but not used [-Wunused-but-set-variable] 2606 | int updown, ifirst; | ^~~~~~ pixutils.c: In function 'DrawCylinderCaps': pixutils.c:2986:21: warning: variable 'alts' set but not used [-Wunused-but-set-variable] 2986 | register int p, alts, altc; | ^~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from outfile.c:170: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ outfile.c: In function 'WriteVectDots': outfile.c:1998:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] 1998 | register int temp, tump; | ^~~~ outfile.c:1998:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] 1998 | register int temp, tump; | ^~~~ outfile.c: In function 'WriteVectMapPoints': outfile.c:2038:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] 2038 | register int temp, tump; | ^~~~ outfile.c:2038:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] 2038 | register int temp, tump; | ^~~~ outfile.c: In function 'R3DSphere': outfile.c:2601:24: warning: variable 'z1' set but not used [-Wunused-but-set-variable] 2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/ | ^~ outfile.c:2601:20: warning: variable 'y1' set but not used [-Wunused-but-set-variable] 2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/ | ^~ outfile.c:2601:16: warning: variable 'x1' set but not used [-Wunused-but-set-variable] 2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/ | ^~ outfile.c: In function 'R3DStrandRibbon': outfile.c:2956:28: warning: variable 'qsz' set but not used [-Wunused-but-set-variable] 2956 | register int qsx, qsy, qsz; | ^~~ At top level: outfile.c:2082:13: warning: 'WriteVectMapBonds' defined but not used [-Wunused-function] 2082 | static void WriteVectMapBonds( void) { | ^~~~~~~~~~~~~~~~~ outfile.c: In function 'WriteR3DFile': outfile.c:2871:26: warning: '%s' directive writing up to 79 bytes into a region of size 22 [-Wformat-overflow=] 2871 | sprintf((char *)name,"%s",buffer); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:866, from outfile.c:191: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 1 and 80 bytes into a destination of size 22 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from script.c:164: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ script.c:2342:13: warning: 'WriteVRMLLine' defined but not used [-Wunused-function] 2342 | static void WriteVRMLLine( int src, int dst, int shade, int *flag ) | ^~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from infile.c:196: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ infile.c: In function 'ApplyBondInfo': infile.c:671:14: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 671 | for(aptr2=group2->alist; aptr2; aptr2=aptr2->anext) | ^~~ infile.c:696:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 696 | if (AtomNum1) break; | ^~ infile.c: In function 'LoadXYZMolecule': infile.c:1365:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 1365 | if( !FetchRecord(DataFile,Record) ) | ^~ infile.c:1367:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1367 | xpos = ypos = zpos = 0.0; | ^~~~ infile.c: In function 'LoadCIFMolecule': infile.c:2210:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2210 | if (!cif_datablock_name (cif, &dbname)) | ^~ infile.c:2212:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2212 | Info.moleculename[55] = '\0'; | ^~~~ infile.c:3232:13: warning: variable 'oNMRModel' set but not used [-Wunused-but-set-variable] 3232 | int oNMRModel; | ^~~~~~~~~ infile.c: In function 'LoadMDLMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadXYZMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadMol2Molecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadAlchemyMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadCharmmMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadMOPACMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadMacroModelMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ In file included from /usr/include/string.h:532, from infile.c:198: In function 'strncpy', inlined from 'ConvertNames' at infile.c:2095:7: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'ConvertNames' at infile.c:2097:7: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 3 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:2470:9: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 5 bytes from a string of length 5 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:2591:38: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 5 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:2624:13: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:2986:9: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 5 bytes from a string of length 6 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:3001:9: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 5 bytes from a string of length 6 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:3004:34: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 5 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:3005:34: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 5 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:3411:46: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 9 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:3444:25: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ infile.c: In function 'LoadPDBMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from tokens.c:194: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_fract.c:197: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif.o cif.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif.c:278: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_ctonum.o cif_ctonum.c cif_ctonum.c:198: warning: "_USE_RASMOL_H_" redefined 198 | #define _USE_RASMOL_H_ | : note: this is the location of the previous definition In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_ctonum.c:200: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_stx.o cif_stx.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from cif_stx.c:227: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o multiple.o multiple.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from multiple.c:225: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ multiple.c: In function 'DrawMoleculeList': multiple.c:664:45: warning: '%s' directive output truncated writing between 28 and 2147483645 bytes into a region of size between 25 and 26 [-Wformat-truncation=] 664 | snprintf(buf, MAX_MOLNAME-4, "%d. %s", i+1, s); | ^~ In file included from /usr/include/stdio.h:866, from multiple.c:248: /usr/include/bits/stdio2.h:70:10: note: '__builtin___snprintf_chk' output between 32 and 2147483650 bytes into a destination of size 29 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o vector.o vector.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from vector.c:159: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o wbrotate.o wbrotate.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from wbrotate.c:201: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from langsel_unix.c:114: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ langsel_unix.c: In function 'SwitchLang': langsel_unix.c:2347:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2347 | if (Interactive) | ^~ langsel_unix.c:2349:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2349 | if (Language != lang) { | ^~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o maps.o maps.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from maps.c:81: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ maps.c: In function 'SaveMapFile': maps.c:429:55: warning: variable 'fcmapmask_zbase' set but not used [-Wunused-but-set-variable] 429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; | ^~~~~~~~~~~~~~~ maps.c:429:36: warning: variable 'fcmapmask_ybase' set but not used [-Wunused-but-set-variable] 429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; | ^~~~~~~~~~~~~~~ maps.c:429:16: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] 429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; | ^~~~~~~~~~~~~~~ maps.c:428:48: warning: variable 'fcmap_zbase' set but not used [-Wunused-but-set-variable] 428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; | ^~~~~~~~~~~ maps.c:428:32: warning: variable 'fcmap_ybase' set but not used [-Wunused-but-set-variable] 428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; | ^~~~~~~~~~~ maps.c:428:16: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] 428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; | ^~~~~~~~~~~ maps.c: In function 'LoadCBFMapFile': maps.c:1758:12: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] 1758 | double fcmapmask_xbase, fcmapmask_ybase, fcmapmask_zbase; | ^~~~~~~~~~~~~~~ maps.c:1757:12: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] 1757 | double fcmap_xbase, fcmap_ybase, fcmap_zbase; | ^~~~~~~~~~~ maps.c:1756:12: warning: variable 'ocmapmask_xbase' set but not used [-Wunused-but-set-variable] 1756 | double ocmapmask_xbase, ocmapmask_ybase, ocmapmask_zbase; | ^~~~~~~~~~~~~~~ maps.c:1755:12: warning: variable 'ocmap_xbase' set but not used [-Wunused-but-set-variable] 1755 | double ocmap_xbase, ocmap_ybase, ocmap_zbase; | ^~~~~~~~~~~ maps.c:1754:12: warning: variable 'mapmask_xbase' set but not used [-Wunused-but-set-variable] 1754 | Long mapmask_xbase, mapmask_ybase, mapmask_zbase; | ^~~~~~~~~~~~~ maps.c:1753:12: warning: variable 'map_xbase' set but not used [-Wunused-but-set-variable] 1753 | Long map_xbase, map_ybase, map_zbase; | ^~~~~~~~~ maps.c: In function 'LoadCCP4MapFile': maps.c:2988:9: warning: variable 'rawelsize' set but not used [-Wunused-but-set-variable] 2988 | int rawelsize; | ^~~~~~~~~ In file included from maps.c:96: maps.c: In function 'map_points': maps.c:4575:42: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] 4575 | MapPointm2o(map,mp,gradient); | ^~~~~~~~ maps.h:187:10: note: in definition of macro 'MapPointm2o' 187 | if (gradient) { \ | ^~~~~~~~ maps.c:4598:44: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] 4598 | MapPointm2o(map,mp,gradient); | ^~~~~~~~ maps.h:187:10: note: in definition of macro 'MapPointm2o' 187 | if (gradient) { \ | ^~~~~~~~ maps.c:4399:12: warning: variable 'koffsets' set but not used [-Wunused-but-set-variable] 4399 | Long koffsets[3][2]; /* The offsets back to the prior cells */ | ^~~~~~~~ maps.c:4398:11: warning: variable 'odirs' set but not used [-Wunused-but-set-variable] 4398 | int odirs[3][2]; /* {Y,Z}, {Z,X}, {X,Y} */ | ^~~~~ maps.c:4396:39: warning: variable 'havebody' set but not used [-Wunused-but-set-variable] 4396 | int haveedges[3], havefaces[3], havebody; | ^~~~~~~~ maps.c: In function 'SaveMapFile': maps.c:394:51: warning: 'mapinfo' may be used uninitialized in this function [-Wmaybe-uninitialized] 394 | cbf_failnez (cbf_set_value(cbf,mapinfo->MapFile)) | ^~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o x11win.o x11win.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from x11win.c:232: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/string.h:532, from x11win.c:234: In function 'strncpy', inlined from 'RasOpenFonts' at x11win.c:811:9: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin___strncpy_chk' specified bound depends on the length of the source argument [-Wstringop-overflow=] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x11win.c: In function 'RasOpenFonts': x11win.c:809:29: note: length computed here 809 | if (!MenuFont && (kl=strlen(menufonts))> 0 ) { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:532, from x11win.c:234: In function 'strncpy', inlined from 'RasOpenFonts' at x11win.c:829:9: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin___strncpy_chk' specified bound depends on the length of the source argument [-Wstringop-overflow=] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x11win.c: In function 'RasOpenFonts': x11win.c:827:29: note: length computed here 827 | if (!MenuFont && (kl=strlen(menufonts))> 0) { | ^~~~~~~~~~~~~~~~~ rm -f rasmol gcc -m32 -o rasmol -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -L/usr/lib -L/usr/lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -lcbf -lCQRlib -lCVector -lCNearTree -lgfortran make: Leaving directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' + mv rasmol rasmol-16bpp + make clean rasmol DEPTHDEF=-DTHIRTYTWOBIT make: Entering directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from rasmol.c:203: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ rasmol.c:1170:15: warning: 'DetermineRasMolPath' defined but not used [-Wunused-function] 1170 | static size_t DetermineRasMolPath( char * rpath, size_t maxlen) { | ^~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from molecule.c:220: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ molecule.c: In function 'CreateSurfaceBonds': molecule.c:2152:27: warning: variable 'dz' set but not used [-Wunused-but-set-variable] 2152 | register Long dx, dy, dz; | ^~ molecule.c:2152:23: warning: variable 'dy' set but not used [-Wunused-but-set-variable] 2152 | register Long dx, dy, dz; | ^~ molecule.c:2152:19: warning: variable 'dx' set but not used [-Wunused-but-set-variable] 2152 | register Long dx, dy, dz; | ^~ At top level: molecule.c:1722:13: warning: 'TestSurface' defined but not used [-Wunused-function] 1722 | static void TestSurface( RAtom __far *sptr, RAtom __far *dptr ) | ^~~~~~~~~~~ In file included from /usr/include/string.h:532, from molecule.c:233: In function 'strncat', inlined from 'ReviseTitle' at molecule.c:377:9: /usr/include/bits/string_fortified.h:122:10: warning: '__builtin___strncat_chk' output may be truncated copying 40 bytes from a string of length 1023 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'ReviseTitle' at molecule.c:374:7: /usr/include/bits/string_fortified.h:122:10: warning: '__builtin___strncat_chk' output may be truncated copying 10 bytes from a string of length 79 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'ReviseTitle' at molecule.c:382:9: /usr/include/bits/string_fortified.h:122:10: warning: '__builtin___strncat_chk' output may be truncated copying between 0 and 58 bytes from a string of length 79 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from abstree.c:81: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cmndline.c:82: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cmndline.c: In function 'ProcessMouseMove': cmndline.c:929:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 929 | for (index=0; index<10; index++) | ^~~ cmndline.c:931:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 931 | SaveQuat.w = DialQRot.w; | ^~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from command.c:91: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ command.c: In function 'Find_Symbol_Definition': command.c:1072:18: warning: variable 'prevsymbol' set but not used [-Wunused-but-set-variable] 1072 | Symbol __far * prevsymbol; | ^~~~~~~~~~ command.c: In function 'PlayMovieFrame': command.c:1493:8: warning: variable 'checkfile' set but not used [-Wunused-but-set-variable] 1493 | int checkfile; | ^~~~~~~~~ command.c: In function 'ParseExpression': command.c:2215:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2215 | case(SheetTok): if( Info.laddercount < 0 ) | ^~ command.c:2217:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2217 | pred = PredSheet; | ^~~~ command.c:2219:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2219 | case(TurnTok): if( Info.turncount < 0 ) | ^~ command.c:2221:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2221 | pred = PredTurn; | ^~~~ command.c:2223:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2223 | case(CystineTok): if( Info.ssbondcount < 0 ) | ^~ command.c:2225:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2225 | pred = PredCystine; | ^~~~ command.c:2227:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2227 | case(CisBondedTok):if( Info.cisbondcount<0 ) | ^~ command.c:2229:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2229 | pred = PredCisBond; | ^~~~ command.c:2328:31: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2328 | case('-'): if( NextIf(NumberTok,ErrNotNum) ) | ^~ command.c:2330:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2330 | return( ParseRange(True) ); | ^~~~~~ command.c: In function 'ReadAtomSelection': command.c:4261:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 4261 | for( QAtom=QGroup->alist; QAtom; QAtom=QAtom->anext ) | ^~~ command.c:4263:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 4263 | SelectCount = 0; | ^~~~~~~~~~~ command.c:4279:4: warning: value computed is not used [-Wunused-value] 4279 | *TokenPtr--; | ^~~~~~~~~~~ command.c:4296:6: warning: value computed is not used [-Wunused-value] 4296 | *TokenPtr--; | ^~~~~~~~~~~ command.c:4337:13: warning: value computed is not used [-Wunused-value] 4337 | *TokenPtr++; | ^~~~~~~~~~~ command.c: In function 'ApplyMapAtomSelection': command.c:4752:12: warning: unused variable 'visits' [-Wunused-variable] 4752 | size_t visits; | ^~~~~~ command.c: In function 'ExecuteCommandOne': command.c:7488:27: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 7488 | case(ResetTok): for( i=0; i<10; i++ ) | ^~~ command.c:7490:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 7490 | ReDrawFlag |= RFDials; | ^~~~~~~~~~ command.c:7501:27: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 7501 | case(HelpTok): if( !HelpFileName ) | ^~ command.c:7503:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 7503 | if( HelpInfo ) | ^~ command.c: In function 'ExecuteIPCCommand': command.c:7964:16: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 7964 | } else if( *ptr=='[' ) | ^~ command.c:7967:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 7967 | if( len < MAXBUFFLEN-1 ) | ^~ At top level: command.c:902:12: warning: 'Define_Symbol' defined but not used [-Wunused-function] 902 | static int Define_Symbol(const char __far * string, const char __far * definition) { | ^~~~~~~~~~~~~ command.c: In function 'ApplyMapShow': command.c:5365:123: warning: ' ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] 5365 | sprintf(buffer," distance to selected van der Waals surface:\n mean %#g, min %#g, max %#g, esd %#g\n", | ^~ In file included from /usr/include/stdio.h:866, from command.c:118: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c:5375:123: warning: ' ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] 5375 | sprintf(buffer," distance to selected Lee-Richards surface:\n mean %#g, min %#g, max %#g, esd %#g\n", | ^~ In file included from /usr/include/stdio.h:866, from command.c:118: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c: In function 'ExecuteCommandOne.part.0': command.c:5906:60: warning: '%g' directive writing between 1 and 13 bytes into a region of size between 6 and 18 [-Wformat-overflow=] 5906 | sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); | ^~ command.c:5906:36: note: assuming directive output of 12 bytes 5906 | sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from command.c:118: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 25 and 49 bytes into a destination of size 40 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from transfor.c:198: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ transfor.c: In function 'SetVanWaalRadius': transfor.c:559:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 559 | if( (ptr->irad)+iProbeRad>MaxAtomRadius ) | ^~ transfor.c:561:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 561 | ptr->flag |= ExpandFlag; | ^~~ transfor.c:563:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 563 | if( ptr->irad>MaxAtomRadius ) | ^~ transfor.c:565:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 565 | ptr->flag &= ~ExpandFlag; | ^~~ transfor.c: In function 'ColourPointAttrib': transfor.c:2282:33: warning: variable 'result' set but not used [-Wunused-but-set-variable] 2282 | register int i,shade,nshade,result; | ^~~~~~ transfor.c: In function 'StructColourAttrib': transfor.c:3064:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 3064 | if( !Database ) | ^~ transfor.c:3066:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 3066 | ColourBondNone(); | ^~~~~~~~~~~~~~ transfor.c: In function 'ScaleColourMap': transfor.c:1702:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' [-Warray-bounds] 1702 | { ScaleRef[i].r = 0; | ~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: while referencing 'ScaleRef' 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ transfor.c:1703:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' [-Warray-bounds] 1703 | ScaleRef[i].g = 0; | ~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: while referencing 'ScaleRef' 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ transfor.c:1704:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' [-Warray-bounds] 1704 | ScaleRef[i].b = 255; | ~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: while referencing 'ScaleRef' 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ transfor.c:1705:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' [-Warray-bounds] 1705 | ScaleRef[i].shade = 0; | ~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: while referencing 'ScaleRef' 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ transfor.c:1706:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' [-Warray-bounds] 1706 | ScaleRef[i].col = 0; | ~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: while referencing 'ScaleRef' 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from render.c:189: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ render.c: In function 'PickAtoms': render.c:2076:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2076 | if( !QAtom ) | ^~ render.c:2079:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2079 | if( PickMode==PickCentr && shift ) | ^~ render.c:2173:15: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 2173 | } else | ^~~~ render.c:2175:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 2175 | QAtom->label = label; | ^~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from repres.c:234: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ repres.c: In function 'TestSolventDot': repres.c:987:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 987 | if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; | ^~ repres.c:987:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 987 | if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; | ^~ repres.c:988:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 988 | if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; | ^~ repres.c:988:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; | ^~ repres.c:989:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 989 | if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; | ^~ repres.c:989:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 989 | if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; | ^~ repres.c: In function 'CalculateSurface': repres.c:1113:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 1113 | if( !Database ) | ^~ repres.c:1116:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1116 | DotCount = density; | ^~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from pixutils.c:183: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pixutils.c: In function 'ClipDashLine': pixutils.c:645:23: warning: variable 'ca' set but not used [-Wunused-but-set-variable] 645 | register Pixel c, ca, mid; | ^~ pixutils.c: In function 'DrawCircle': pixutils.c:2606:6: warning: variable 'updown' set but not used [-Wunused-but-set-variable] 2606 | int updown, ifirst; | ^~~~~~ pixutils.c: In function 'DrawCylinderCaps': pixutils.c:2986:21: warning: variable 'alts' set but not used [-Wunused-but-set-variable] 2986 | register int p, alts, altc; | ^~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from outfile.c:170: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ outfile.c: In function 'WriteVectDots': outfile.c:1998:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] 1998 | register int temp, tump; | ^~~~ outfile.c:1998:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] 1998 | register int temp, tump; | ^~~~ outfile.c: In function 'WriteVectMapPoints': outfile.c:2038:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] 2038 | register int temp, tump; | ^~~~ outfile.c:2038:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] 2038 | register int temp, tump; | ^~~~ outfile.c: In function 'R3DSphere': outfile.c:2601:24: warning: variable 'z1' set but not used [-Wunused-but-set-variable] 2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/ | ^~ outfile.c:2601:20: warning: variable 'y1' set but not used [-Wunused-but-set-variable] 2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/ | ^~ outfile.c:2601:16: warning: variable 'x1' set but not used [-Wunused-but-set-variable] 2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/ | ^~ outfile.c: In function 'R3DStrandRibbon': outfile.c:2956:28: warning: variable 'qsz' set but not used [-Wunused-but-set-variable] 2956 | register int qsx, qsy, qsz; | ^~~ At top level: outfile.c:2082:13: warning: 'WriteVectMapBonds' defined but not used [-Wunused-function] 2082 | static void WriteVectMapBonds( void) { | ^~~~~~~~~~~~~~~~~ outfile.c: In function 'WriteR3DFile': outfile.c:2871:26: warning: '%s' directive writing up to 79 bytes into a region of size 22 [-Wformat-overflow=] 2871 | sprintf((char *)name,"%s",buffer); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:866, from outfile.c:191: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 1 and 80 bytes into a destination of size 22 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from script.c:164: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ script.c:2342:13: warning: 'WriteVRMLLine' defined but not used [-Wunused-function] 2342 | static void WriteVRMLLine( int src, int dst, int shade, int *flag ) | ^~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from infile.c:196: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ infile.c: In function 'ApplyBondInfo': infile.c:671:14: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 671 | for(aptr2=group2->alist; aptr2; aptr2=aptr2->anext) | ^~~ infile.c:696:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 696 | if (AtomNum1) break; | ^~ infile.c: In function 'LoadXYZMolecule': infile.c:1365:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 1365 | if( !FetchRecord(DataFile,Record) ) | ^~ infile.c:1367:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1367 | xpos = ypos = zpos = 0.0; | ^~~~ infile.c: In function 'LoadCIFMolecule': infile.c:2210:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2210 | if (!cif_datablock_name (cif, &dbname)) | ^~ infile.c:2212:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2212 | Info.moleculename[55] = '\0'; | ^~~~ infile.c:3232:13: warning: variable 'oNMRModel' set but not used [-Wunused-but-set-variable] 3232 | int oNMRModel; | ^~~~~~~~~ infile.c: In function 'LoadMDLMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadXYZMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadMol2Molecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadAlchemyMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadCharmmMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadMOPACMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c: In function 'LoadMacroModelMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ In file included from /usr/include/string.h:532, from infile.c:198: In function 'strncpy', inlined from 'ConvertNames' at infile.c:2095:7: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'ConvertNames' at infile.c:2097:7: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 3 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:2470:9: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 5 bytes from a string of length 5 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:2591:38: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 5 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:2624:13: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:2986:9: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 5 bytes from a string of length 6 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:3001:9: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 5 bytes from a string of length 6 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:3004:34: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 5 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:3005:34: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 5 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:3411:46: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 9 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'LoadCIFMolecule' at infile.c:3444:25: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 4 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ infile.c: In function 'LoadPDBMolecule': infile.c:335:26: warning: array subscript 256 is outside array bounds of 'char[256]' [-Warray-bounds] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c:295:19: note: while referencing 'Record' 295 | static char __far Record[256]; | ^~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from tokens.c:194: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_fract.c:197: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif.o cif.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif.c:278: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_ctonum.o cif_ctonum.c cif_ctonum.c:198: warning: "_USE_RASMOL_H_" redefined 198 | #define _USE_RASMOL_H_ | : note: this is the location of the previous definition In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_ctonum.c:200: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_stx.o cif_stx.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from cif_stx.c:227: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o multiple.o multiple.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from multiple.c:225: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ multiple.c: In function 'DrawMoleculeList': multiple.c:664:45: warning: '%s' directive output truncated writing between 28 and 2147483645 bytes into a region of size between 25 and 26 [-Wformat-truncation=] 664 | snprintf(buf, MAX_MOLNAME-4, "%d. %s", i+1, s); | ^~ In file included from /usr/include/stdio.h:866, from multiple.c:248: /usr/include/bits/stdio2.h:70:10: note: '__builtin___snprintf_chk' output between 32 and 2147483650 bytes into a destination of size 29 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o vector.o vector.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from vector.c:159: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o wbrotate.o wbrotate.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from wbrotate.c:201: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from langsel_unix.c:114: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ langsel_unix.c: In function 'SwitchLang': langsel_unix.c:2347:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2347 | if (Interactive) | ^~ langsel_unix.c:2349:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2349 | if (Language != lang) { | ^~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o maps.o maps.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from maps.c:81: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ maps.c: In function 'SaveMapFile': maps.c:429:55: warning: variable 'fcmapmask_zbase' set but not used [-Wunused-but-set-variable] 429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; | ^~~~~~~~~~~~~~~ maps.c:429:36: warning: variable 'fcmapmask_ybase' set but not used [-Wunused-but-set-variable] 429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; | ^~~~~~~~~~~~~~~ maps.c:429:16: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] 429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; | ^~~~~~~~~~~~~~~ maps.c:428:48: warning: variable 'fcmap_zbase' set but not used [-Wunused-but-set-variable] 428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; | ^~~~~~~~~~~ maps.c:428:32: warning: variable 'fcmap_ybase' set but not used [-Wunused-but-set-variable] 428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; | ^~~~~~~~~~~ maps.c:428:16: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] 428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; | ^~~~~~~~~~~ maps.c: In function 'LoadCBFMapFile': maps.c:1758:12: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] 1758 | double fcmapmask_xbase, fcmapmask_ybase, fcmapmask_zbase; | ^~~~~~~~~~~~~~~ maps.c:1757:12: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] 1757 | double fcmap_xbase, fcmap_ybase, fcmap_zbase; | ^~~~~~~~~~~ maps.c:1756:12: warning: variable 'ocmapmask_xbase' set but not used [-Wunused-but-set-variable] 1756 | double ocmapmask_xbase, ocmapmask_ybase, ocmapmask_zbase; | ^~~~~~~~~~~~~~~ maps.c:1755:12: warning: variable 'ocmap_xbase' set but not used [-Wunused-but-set-variable] 1755 | double ocmap_xbase, ocmap_ybase, ocmap_zbase; | ^~~~~~~~~~~ maps.c:1754:12: warning: variable 'mapmask_xbase' set but not used [-Wunused-but-set-variable] 1754 | Long mapmask_xbase, mapmask_ybase, mapmask_zbase; | ^~~~~~~~~~~~~ maps.c:1753:12: warning: variable 'map_xbase' set but not used [-Wunused-but-set-variable] 1753 | Long map_xbase, map_ybase, map_zbase; | ^~~~~~~~~ maps.c: In function 'LoadCCP4MapFile': maps.c:2988:9: warning: variable 'rawelsize' set but not used [-Wunused-but-set-variable] 2988 | int rawelsize; | ^~~~~~~~~ In file included from maps.c:96: maps.c: In function 'map_points': maps.c:4575:42: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] 4575 | MapPointm2o(map,mp,gradient); | ^~~~~~~~ maps.h:187:10: note: in definition of macro 'MapPointm2o' 187 | if (gradient) { \ | ^~~~~~~~ maps.c:4598:44: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] 4598 | MapPointm2o(map,mp,gradient); | ^~~~~~~~ maps.h:187:10: note: in definition of macro 'MapPointm2o' 187 | if (gradient) { \ | ^~~~~~~~ maps.c:4399:12: warning: variable 'koffsets' set but not used [-Wunused-but-set-variable] 4399 | Long koffsets[3][2]; /* The offsets back to the prior cells */ | ^~~~~~~~ maps.c:4398:11: warning: variable 'odirs' set but not used [-Wunused-but-set-variable] 4398 | int odirs[3][2]; /* {Y,Z}, {Z,X}, {X,Y} */ | ^~~~~ maps.c:4396:39: warning: variable 'havebody' set but not used [-Wunused-but-set-variable] 4396 | int haveedges[3], havefaces[3], havebody; | ^~~~~~~~ maps.c: In function 'SaveMapFile': maps.c:394:51: warning: 'mapinfo' may be used uninitialized in this function [-Wmaybe-uninitialized] 394 | cbf_failnez (cbf_set_value(cbf,mapinfo->MapFile)) | ^~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o x11win.o x11win.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from x11win.c:232: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/string.h:532, from x11win.c:234: In function 'strncpy', inlined from 'RasOpenFonts' at x11win.c:811:9: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin___strncpy_chk' specified bound depends on the length of the source argument [-Wstringop-overflow=] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x11win.c: In function 'RasOpenFonts': x11win.c:809:29: note: length computed here 809 | if (!MenuFont && (kl=strlen(menufonts))> 0 ) { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:532, from x11win.c:234: In function 'strncpy', inlined from 'RasOpenFonts' at x11win.c:829:9: /usr/include/bits/string_fortified.h:91:10: warning: '__builtin___strncpy_chk' specified bound depends on the length of the source argument [-Wstringop-overflow=] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x11win.c: In function 'RasOpenFonts': x11win.c:827:29: note: length computed here 827 | if (!MenuFont && (kl=strlen(menufonts))> 0) { | ^~~~~~~~~~~~~~~~~ rm -f rasmol gcc -m32 -o rasmol -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -L/usr/lib -L/usr/lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -lcbf -lCQRlib -lCVector -lCNearTree -lgfortran make: Leaving directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' + mv rasmol rasmol-32bpp + popd ~/RPM/BUILD/RasMol-2.7.5.2 + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.66524 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/RasMol-buildroot + : + /bin/rm -rf -- /usr/src/tmp/RasMol-buildroot + PATH=/usr/libexec/rpm-build:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games + cd RasMol-2.7.5.2 + find -type f -name .DS_Store -execdir rm '{}' + + install -pDm755 /usr/src/RPM/SOURCES/rasmol.sh /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol + install -pm755 src/rasmol-8bpp /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol-8bpp + install -pm755 src/rasmol-16bpp /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol-16bpp + install -pm755 src/rasmol-32bpp /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol-32bpp + mkdir -p /usr/src/tmp/RasMol-buildroot/usr/share/RasMol /usr/src/tmp/RasMol-buildroot/usr/share/man/man1/ + install -pm644 doc/rasmol.1.gz /usr/src/tmp/RasMol-buildroot/usr/share/man/man1/rasmol.1.gz + install -pm644 doc/rasmol.hlp /usr/src/tmp/RasMol-buildroot/usr/share/RasMol/rasmol.hlp + install -pm644 doc/rasmol.html /usr/src/tmp/RasMol-buildroot/usr/share/RasMol/rasmol.html + pushd doc ~/RPM/BUILD/RasMol-2.7.5.2/doc ~/RPM/BUILD/RasMol-2.7.5.2 + rm rasmol.hlp rasmol.html rasmol.1.gz + mkdir doc + install -pm644 INSTALL.html NOTICE.html README.html esrasmol27.html esrasmol2721.html index.html manualA4.pdf.gz manualUS.pdf.gz refcardA4.pdf.gz refcardUS.pdf.gz manualA4.ps.gz manualUS.ps.gz refcardA4.ps.gz refcardUS.ps.gz manualA4.rtf.gz manualUS.rtf.gz raswin.rtf.gz refcardA4.rtf.gz refcardUS.rtf.gz rasmol.doc.gz doc/ + mkdir examples + popd ~/RPM/BUILD/RasMol-2.7.5.2 + mv data/1crn.pdb data/1gpd.pdb.gz data/1ldb.pdb.gz data/1ldm.pdb.gz data/3cro.pdb data/4hir.ent.gz data/4ins.CIF data/7lyz.pdb data/IUCR9800028.cif data/RSML_fixup.csh data/asprin.alc data/pdb2mcg.ent doc/examples/ + install -pDm644 /usr/src/RPM/SOURCES/rasmol.xpm /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/32x32/apps/rasmol.xpm + install -pDm644 /usr/src/RPM/SOURCES/rasmol_16x14.png /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/16x16/apps/rasmol.png + install -pDm644 /usr/src/RPM/SOURCES/rasmol_32x29.png /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/32x32/apps/rasmol.png + install -pDm644 /usr/src/RPM/SOURCES/rasmol_64x58.png /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/64x64/apps/rasmol.png + install -pDm644 /usr/src/RPM/SOURCES/rasmol.desktop /usr/src/tmp/RasMol-buildroot/usr/share/applications/RasMol.desktop + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/RasMol-buildroot (auto) Verifying and fixing files in /usr/src/tmp/RasMol-buildroot (binconfig,pkgconfig,libtool,desktop,gnuconfig) Checking contents of files in /usr/src/tmp/RasMol-buildroot/ (default) Compressing files in /usr/src/tmp/RasMol-buildroot (auto) Verifying ELF objects in /usr/src/tmp/RasMol-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) Processing files: RasMol-2.7.5.2-alt5 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.65379 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd RasMol-2.7.5.2 + DOCDIR=/usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + export DOCDIR + rm -rf /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + /bin/mkdir -p /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + cp -prL doc/ /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R go-w /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R a+rX /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + cp -prL NOTICE PROJECTS RASLIC README.html README.shtml README.txt INSTALL INSTALL.html TODO.html TODO.txt ChangeLog ChangeLog.html ChangeLog.txt history.html /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R go-w /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R a+rX /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.VpTm7U find-provides: running scripts (debuginfo,lib,pam,perl,pkgconfig,python,python3,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.a44IoU find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,systemd-services) Provides: rasmol = 2.7.5.2-alt5 Requires: fonts-bitmap-75dpi, xdpyinfo, /bin/sh, /lib/ld-linux.so.2, libCNearTree.so.7 >= set:jfy8eX61ZJ5rZ4xDtOoY3Ofm, libCQRlib.so.2 >= set:jhBWnjL0, libCVector-1.0.3.so.2 >= set:hfsOoCd, libX11.so.6 >= set:ohc6fbkxsesVSZD9TAWJZxFUMYKZF7XZFHoAwZoYIZ2TYjO5aoG8X4Ct9JQyRnIXmV2F0aHbK2ZEIMkiMh7yzkXHE6SFl6Ha4Znpd3lnVtPcXGZBdges21HaRZJR0gURRPSLYLM70RcAA80Vgr3LUciiZbdtHCjMHh3JmZsZmA0wfU8Z8CaFM9ckOPvlJQeQ8HE5AmdIcwyk5PhmNA2U1e, libXext.so.6 >= set:li6tHmY7qME5J7, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.15), libc.so.6(GLIBC_2.2), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libc.so.6(GLIBC_2.7), libcbf.so.0 >= set:nhij0GYBa6O0x4WIjboz5OU4ATPkFBqBcbzYg8P0ecxUzu3yNivD0dJUmrTQFZ7ZKL0g0Njm3mBpemz9qh1jta3BdIxPLMksDf0UwsKp15JkFisAQRQfEn, libm.so.6(GLIBC_2.0), libm.so.6(GLIBC_2.1), libm.so.6(GLIBC_2.29), rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.AyhBNW Creating RasMol-debuginfo package Processing files: RasMol-debuginfo-2.7.5.2-alt5 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.JjS6FU find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.ojI0iW find-requires: running scripts (debuginfo) Requires: RasMol = 2.7.5.2-alt5, /usr/lib/debug/lib/ld-linux.so.2.debug, debug(libCNearTree.so.7), debug(libCQRlib.so.2), debug(libCVector-1.0.3.so.2), debug(libX11.so.6), debug(libXext.so.6), debug(libc.so.6), debug(libcbf.so.0), debug(libm.so.6) Adding to RasMol-debuginfo a strict dependency on RasMol Wrote: /usr/src/RPM/RPMS/i586/RasMol-2.7.5.2-alt5.i586.rpm (w2T8.xzdio) Wrote: /usr/src/RPM/RPMS/i586/RasMol-debuginfo-2.7.5.2-alt5.i586.rpm (w2.lzdio) 98.98user 6.47system 1:53.26elapsed 93%CPU (0avgtext+0avgdata 115716maxresident)k 0inputs+0outputs (0major+1285510minor)pagefaults 0swaps /.out/RasMol-2.7.5.2-alt5.i586.rpm: license not found in '/usr/share/license' directory: GPL-like /.out/RasMol-debuginfo-2.7.5.2-alt5.i586.rpm: license not found in '/usr/share/license' directory: GPL-like 105.51user 10.12system 2:08.65elapsed 89%CPU (0avgtext+0avgdata 115716maxresident)k 2448inputs+0outputs (0major+1591121minor)pagefaults 0swaps --- RasMol-2.7.5.2-alt5.i586.rpm.repo 2019-06-16 14:28:06.000000000 +0000 +++ RasMol-2.7.5.2-alt5.i586.rpm.hasher 2021-05-29 14:52:40.477413250 +0000 @@ -135,2 +135,3 @@ Requires: libc.so.6(GLIBC_2.1) +Requires: libc.so.6(GLIBC_2.1.3) Requires: libc.so.6(GLIBC_2.15) @@ -144,4 +145,5 @@ Requires: libm.so.6(GLIBC_2.1) +Requires: libm.so.6(GLIBC_2.29) Requires: rtld(GNU_HASH) -Requires: rpmlib(PayloadIsLzma) +Requires: rpmlib(PayloadIsXz) Provides: rasmol = 2.7.5.2-alt5