<86>Dec 12 11:23:08 userdel[84653]: delete user 'rooter' <86>Dec 12 11:23:08 userdel[84653]: removed group 'rooter' owned by 'rooter' <86>Dec 12 11:23:08 userdel[84653]: removed shadow group 'rooter' owned by 'rooter' <86>Dec 12 11:23:08 groupadd[84731]: group added to /etc/group: name=rooter, GID=651 <86>Dec 12 11:23:08 groupadd[84731]: group added to /etc/gshadow: name=rooter <86>Dec 12 11:23:08 groupadd[84731]: new group: name=rooter, GID=651 <86>Dec 12 11:23:08 useradd[84764]: new user: name=rooter, UID=651, GID=651, home=/root, shell=/bin/bash <86>Dec 12 11:23:08 userdel[84845]: delete user 'builder' <86>Dec 12 11:23:08 userdel[84845]: removed group 'builder' owned by 'builder' <86>Dec 12 11:23:08 userdel[84845]: removed shadow group 'builder' owned by 'builder' <86>Dec 12 11:23:08 groupadd[84900]: group added to /etc/group: name=builder, GID=652 <86>Dec 12 11:23:08 groupadd[84900]: group added to /etc/gshadow: name=builder <86>Dec 12 11:23:08 groupadd[84900]: new group: name=builder, GID=652 <86>Dec 12 11:23:08 useradd[84940]: new user: name=builder, UID=652, GID=652, home=/usr/src, shell=/bin/bash <13>Dec 12 11:23:14 rpmi: libjpeg-2:2.0.2-alt1 sisyphus+226996.100.1.1 1554902907 installed <13>Dec 12 11:23:14 rpmi: libexpat-2.2.4-alt1 1503305345 installed <13>Dec 12 11:23:14 rpmi: libpng16-1.6.37-alt1 sisyphus+236677.100.2.1 1566917998 installed <13>Dec 12 11:23:14 rpmi: perl-HTTP-Date-6.04-alt1 sisyphus+241046.100.1.1 1574192946 installed <13>Dec 12 11:23:14 rpmi: libwebp7-1.0.3-alt1 sisyphus+234493.100.1.1 1563090160 installed <13>Dec 12 11:23:14 rpmi: libogg-1.3.3-alt1 sisyphus+221902.4000.4.1 1550598661 installed <13>Dec 12 11:23:15 rpmi: libicu65-1:6.5.1-alt1 sisyphus+238768.100.16.1 1571427455 installed <13>Dec 12 11:23:15 rpmi: libgnustep-objc2-1.7.0-alt14.svn20140704 sisyphus+221065.100.4.2 1549734427 installed <13>Dec 12 11:23:15 rpmi: libcom_err-1.44.6-alt1 sisyphus+224154.100.1.1 1552091678 installed <13>Dec 12 11:23:15 rpmi: libgdbm-1.8.3-alt10 1454943334 installed <13>Dec 12 11:23:15 rpmi: libjasper-2.0.16-alt1 sisyphus+231386.100.1.1 1559568070 installed <13>Dec 12 11:23:15 rpmi: libltdl7-2.4.6-alt1 sisyphus+226971.100.2.1 1554906368 installed <13>Dec 12 11:23:15 rpmi: libopenjpeg2.0-2.3.1-alt1 sisyphus+226454.100.1.1 1554284337 installed <13>Dec 12 11:23:15 rpmi: libjbig-2.1-alt1 1401380926 installed <13>Dec 12 11:23:15 rpmi: libtiff5-4.1.0-alt1 sisyphus+240802.100.1.1 1573743635 installed <13>Dec 12 11:23:15 rpmi: libICE-1.0.9-alt1 1409902721 installed <13>Dec 12 11:23:15 rpmi: libglvnd-7:1.2.0-alt4 sisyphus+241659.100.1.1 1574755345 installed <13>Dec 12 11:23:15 rpmi: libwayland-server-1.17.0-alt1 sisyphus+225894.100.1.1 1553872805 installed <13>Dec 12 11:23:15 rpmi: ilmbase24-common-2.3.0-alt1 sisyphus+237892.300.1.1 1568978210 installed <13>Dec 12 11:23:15 rpmi: libiex24-2.3.0-alt1 sisyphus+237892.300.1.1 1568978210 installed <13>Dec 12 11:23:15 rpmi: libnettle7-3.5.1-alt1 sisyphus+235265.40.6.1 1566223065 installed <13>Dec 12 11:23:15 rpmi: libgpg-error-1.36-alt1 sisyphus+225621.300.1.1 1553521082 installed <13>Dec 12 11:23:15 rpmi: libgcrypt20-1.8.5-alt3 sisyphus+239622.100.1.1 1571746654 installed <13>Dec 12 11:23:15 rpmi: libxslt-1.1.34-alt1 sisyphus+240826.100.1.1 1573801860 installed <13>Dec 12 11:23:15 rpmi: perl-LWP-MediaTypes-6.04-alt1 sisyphus+225468.100.1.1 1553186684 installed <13>Dec 12 11:23:15 rpmi: perl-Compress-Raw-Zlib-2.093-alt1 sisyphus+242766.100.1.1 1576089368 installed <13>Dec 12 11:23:15 rpmi: perl-libnet-1:3.11-alt1 1511423541 installed <13>Dec 12 11:23:15 rpmi: libobjc4-9.2.1-alt2 sisyphus+240563.200.2.1 1573479396 installed <13>Dec 12 11:23:15 rpmi: libp11-kit-0.23.15-alt1 sisyphus+226408.100.2.1 1554288204 installed <13>Dec 12 11:23:15 rpmi: libtasn1-4.15.0-alt1 sisyphus+241940.100.1.1 1574959866 installed <13>Dec 12 11:23:15 rpmi: libaspell-0.60.6.1-alt3 1534002619 installed <13>Dec 12 11:23:15 rpmi: aspell-0.60.6.1-alt3 1534002619 installed <13>Dec 12 11:23:15 rpmi: libobjc9-devel-9.2.1-alt2 sisyphus+240563.200.2.1 1573479396 installed <13>Dec 12 11:23:16 rpmi: gcc9-objc-9.2.1-alt2 sisyphus+240563.200.2.1 1573479396 installed <13>Dec 12 11:23:16 rpmi: gcc-objc-9-alt1 sisyphus+239632.300.3.1 1571789214 installed <13>Dec 12 11:23:16 rpmi: libobjc8-devel-8.3.1-alt7 sisyphus+239632.200.3.1 1571787152 installed <13>Dec 12 11:23:16 rpmi: libgpg-error-devel-1.36-alt1 sisyphus+225621.300.1.1 1553521082 installed <13>Dec 12 11:23:16 rpmi: libhogweed5-3.5.1-alt1 sisyphus+235265.40.6.1 1566223065 installed <13>Dec 12 11:23:16 rpmi: libilmthread24-2.3.0-alt1 sisyphus+237892.300.1.1 1568978210 installed <13>Dec 12 11:23:16 rpmi: libhalf24-2.3.0-alt1 sisyphus+237892.300.1.1 1568978210 installed <13>Dec 12 11:23:16 rpmi: libSM-1.2.3-alt1 sisyphus+226734.100.2.1 1554586158 installed <13>Dec 12 11:23:16 rpmi: libicns-0.7.1-alt1.2 sisyphus+223351.100.1.1 1551468904 installed <13>Dec 12 11:23:16 rpmi: libgdbm-devel-1.8.3-alt10 1454943334 installed <13>Dec 12 11:23:16 rpmi: libe2fs-1.44.6-alt1 sisyphus+224154.100.1.1 1552091678 installed <13>Dec 12 11:23:16 rpmi: libss-1.44.6-alt1 sisyphus+224154.100.1.1 1552091678 installed <13>Dec 12 11:23:16 rpmi: e2fsprogs-1.44.6-alt1 sisyphus+224154.100.1.1 1552091678 installed <13>Dec 12 11:23:16 rpmi: libgnustep-objc2-devel-1.7.0-alt14.svn20140704 sisyphus+221065.100.4.2 1549734427 installed <13>Dec 12 11:23:16 rpmi: icu-utils-1:6.5.1-alt1 sisyphus+238768.100.16.1 1571427455 installed <13>Dec 12 11:23:16 rpmi: libflac8-1.3.2-alt2 sisyphus+220898.4400.11.1 1551973321 installed <13>Dec 12 11:23:16 rpmi: libvorbis-1.3.6-alt2 sisyphus+220072.200.2.2 1548744475 installed <13>Dec 12 11:23:16 rpmi: perl-File-Listing-6.04-alt1 1329758996 installed <13>Dec 12 11:23:16 rpmi: libxml2-devel-1:2.9.10-alt2 sisyphus+240156.100.1.1 1572696450 installed <13>Dec 12 11:23:16 rpmi: libgif-4.1.6-alt3 1299634261 installed <13>Dec 12 11:23:16 rpmi: libwmflite-0.2.8.4-alt13 1506519339 installed <13>Dec 12 11:23:16 rpmi: liblqr-0.4.2-alt1 1383038438 installed <13>Dec 12 11:23:16 rpmi: liblcms2-2.9-alt1 1516411892 installed <13>Dec 12 11:23:16 rpmi: libgomp1-9.2.1-alt2 sisyphus+240563.200.2.1 1573479396 installed <13>Dec 12 11:23:16 rpmi: libgts-0.7.6-alt2.drc20130205.1 sisyphus+225727.500.8.1 1553672623 installed <13>Dec 12 11:23:16 rpmi: libpaper-1.1.26-alt1 sisyphus+221360.100.1.1 1549974197 installed <13>Dec 12 11:23:16 rpmi: icon-theme-hicolor-0.17-alt1 1505715846 installed <13>Dec 12 11:23:16 rpmi: shared-mime-info-1.15-alt1 sisyphus+240378.100.1.1 1573073800 installed <13>Dec 12 11:23:16 rpmi: gsettings-desktop-schemas-data-3.34.0-alt1 sisyphus+237956.300.4.2 1569331130 installed <13>Dec 12 11:23:16 rpmi: libgio-2.62.3-alt1 sisyphus+241586.200.1.1 1574668909 installed <13>Dec 12 11:23:16 rpmi: gsettings-desktop-schemas-3.34.0-alt1 sisyphus+237956.300.4.2 1569331192 installed <13>Dec 12 11:23:16 rpmi: libgdk-pixbuf-locales-2.40.0-alt1 sisyphus+238952.140.2.1 1570644607 installed <13>Dec 12 11:23:16 rpmi: libgdk-pixbuf-2.40.0-alt1 sisyphus+238952.140.2.1 1570644615 installed <13>Dec 12 11:23:16 rpmi: gtk-update-icon-cache-3.24.13-alt1 sisyphus+241862.100.1.1 1574928027 installed <13>Dec 12 11:23:17 rpmi: libgtk+2-locales-2.24.32-alt3 sisyphus+227306.100.1.3 1555646039 installed <13>Dec 12 11:23:17 rpmi: libatk-locales-2.34.1-alt1 sisyphus+237956.700.4.2 1569332333 installed <13>Dec 12 11:23:17 rpmi: libatk-2.34.1-alt1 sisyphus+237956.700.4.2 1569332796 installed <13>Dec 12 11:23:17 rpmi: libdatrie-0.2.9-alt1_6 1511686676 installed <13>Dec 12 11:23:17 rpmi: libthai-0.1.28-alt1_1 sisyphus+226107.100.1.1 1554123079 installed <13>Dec 12 11:23:17 rpmi: libfribidi-1.0.7-alt1 sisyphus+238256.100.1.1 1569654633 installed <13>Dec 12 11:23:17 rpmi: libpixman-3:0.38.4-alt1 sisyphus+228006.100.1.1 1556013870 installed <13>Dec 12 11:23:17 rpmi: libxshmfence-1.3-alt1 sisyphus+223149.1000.2.1 1551268571 installed <13>Dec 12 11:23:17 rpmi: libwayland-client-1.17.0-alt1 sisyphus+225894.100.1.1 1553872805 installed <13>Dec 12 11:23:17 rpmi: libpciaccess-1:0.16-alt1 sisyphus+234814.100.1.1 1563438291 installed <13>Dec 12 11:23:17 rpmi: libdrm-1:2.4.100-alt1 sisyphus+240099.100.1.1 1572599774 installed <13>Dec 12 11:23:17 rpmi: libgbm-4:19.2.7-alt1 sisyphus+242428.100.1.2 1575624348 installed <13>Dec 12 11:23:17 rpmi: libgraphite2-1.3.13-alt2 sisyphus+226799.100.1.1 1554648241 installed <13>Dec 12 11:23:17 rpmi: libharfbuzz-2.6.4-alt1 sisyphus+240033.100.1.1 1572506773 installed <13>Dec 12 11:23:17 rpmi: libfreetype-2.10.1-alt1 sisyphus+237471.100.1.1 1568276356 installed <13>Dec 12 11:23:17 rpmi: fontconfig-2.13.1-alt1 sisyphus+226691.100.2.2 1554598726 installed Updating fonts cache: <29>Dec 12 11:23:18 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Dec 12 11:23:18 rpmi: libX11-locales-3:1.6.9-alt1 sisyphus+239210.100.1.1 1571056781 installed <13>Dec 12 11:23:18 rpmi: libXdmcp-1.1.3-alt1 sisyphus+225206.600.1.2 1552949353 installed <13>Dec 12 11:23:18 rpmi: libXau-1.0.9-alt1 sisyphus+223149.200.2.1 1551268152 installed <13>Dec 12 11:23:18 rpmi: libxcb-1.13.1-alt1 sisyphus+226527.100.2.2 1554593801 installed <13>Dec 12 11:23:18 rpmi: libX11-3:1.6.9-alt1 sisyphus+239210.100.1.1 1571056801 installed <13>Dec 12 11:23:18 rpmi: libXext-1.3.4-alt1 sisyphus+225206.700.1.2 1552949429 installed <13>Dec 12 11:23:18 rpmi: libXrender-0.9.8-alt1 1371312112 installed <13>Dec 12 11:23:18 rpmi: libXfixes-5.0.3-alt1 sisyphus+226736.100.2.2 1554614841 installed <13>Dec 12 11:23:18 rpmi: libXdamage-1.1.5-alt1 sisyphus+225206.500.1.2 1552949286 installed <13>Dec 12 11:23:18 rpmi: libXcursor-1.2.0-alt1 sisyphus+225206.400.1.2 1552949218 installed <13>Dec 12 11:23:18 rpmi: libXft-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987708 installed <13>Dec 12 11:23:18 rpmi: libXrandr-1.5.2-alt1 sisyphus+225206.1300.1.2 1552949710 installed <13>Dec 12 11:23:18 rpmi: libXxf86vm-1.1.4-alt2 1527672187 installed <13>Dec 12 11:23:18 rpmi: libGLX-mesa-4:19.2.7-alt1 sisyphus+242428.100.1.2 1575624348 installed <13>Dec 12 11:23:18 rpmi: libEGL-mesa-4:19.2.7-alt1 sisyphus+242428.100.1.2 1575624348 installed <13>Dec 12 11:23:18 rpmi: libEGL-7:1.2.0-alt4 sisyphus+241659.100.1.1 1574755345 installed <13>Dec 12 11:23:18 rpmi: libGLX-7:1.2.0-alt4 sisyphus+241659.100.1.1 1574755345 installed <13>Dec 12 11:23:18 rpmi: libGL-7:1.2.0-alt4 sisyphus+241659.100.1.1 1574755345 installed <13>Dec 12 11:23:18 rpmi: libcairo-1:1.16.0-alt1 sisyphus+226534.100.2.3 1554515535 installed <13>Dec 12 11:23:18 rpmi: libpango-1.44.7-alt1 sisyphus+239731.100.1.1 1571986949 installed <13>Dec 12 11:23:18 rpmi: liblasi-1.1.3-alt2 sisyphus+239300.100.1.1 1571209616 installed <13>Dec 12 11:23:18 rpmi: librsvg-1:2.46.4-alt1 sisyphus+241586.500.1.2 1574679453 installed <13>Dec 12 11:23:18 rpmi: libXi-1.7.10-alt1 sisyphus+232786.300.1.1 1561106978 installed <13>Dec 12 11:23:18 rpmi: libXinerama-1.1.4-alt1 sisyphus+223149.300.2.1 1551268216 installed <13>Dec 12 11:23:18 rpmi: libXt-1.1.4-alt1 1369984722 installed <13>Dec 12 11:23:18 rpmi: libXpm-3.5.12-alt1 sisyphus+223149.400.2.1 1551268289 installed <13>Dec 12 11:23:18 rpmi: libgd3-2.2.5-alt3 sisyphus+226800.200.2.1 1554649317 installed <13>Dec 12 11:23:18 rpmi: libXcomposite-0.4.5-alt1 sisyphus+225206.300.1.2 1552949137 installed <13>Dec 12 11:23:18 rpmi: openexr24-common-2.3.0-alt2 sisyphus+237980.100.1.1 1569181634 installed <13>Dec 12 11:23:18 rpmi: libilmimf24-2.3.0-alt2 sisyphus+237980.100.1.1 1569181634 installed <13>Dec 12 11:23:19 rpmi: libgsm-1.0.17-alt1 1523356165 installed <13>Dec 12 11:23:19 rpmi: libsndfile-1.0.28-alt2 sisyphus.212728.100 1536333068 installed <13>Dec 12 11:23:19 rpmi: liblz4-1:1.9.2-alt1 sisyphus+238585.100.2.2 1570066927 installed <13>Dec 12 11:23:19 rpmi: libsystemd-1:244-alt1 sisyphus+242291.100.1.1 1575476478 installed <13>Dec 12 11:23:19 rpmi: libdbus-1.12.16-alt2 sisyphus+240566.100.2.1 1573547696 installed <13>Dec 12 11:23:19 rpmi: libavahi-0.7-alt1 sisyphus+237493.100.1.1 1568299481 installed <13>Dec 12 11:23:19 rpmi: libcups-2.2.12-alt3 sisyphus+240570.100.1.1 1573481639 installed <13>Dec 12 11:23:19 rpmi: libgtk+2-2.24.32-alt3 sisyphus+227306.100.1.3 1555646092 installed <13>Dec 12 11:23:20 rpmi: libgs-9.28-alt0.rc1.1 sisyphus+237325.100.1.1 1568104012 installed <13>Dec 12 11:23:20 rpmi: libgraphviz-2.40.1-alt8 sisyphus+239300.200.2.1 1571210558 installed <13>Dec 12 11:23:20 rpmi: libidn2-2.3.0-alt1 sisyphus+240846.100.1.2 1573870475 installed <13>Dec 12 11:23:20 rpmi: libgnutls30-3.6.11-alt1 sisyphus+242147.100.1.1 1575311041 installed <13>Dec 12 11:23:20 rpmi: libgnustep-base-1:1.24.6-alt8.svn20140226 sisyphus+238768.600.16.1 1571431725 installed <13>Dec 12 11:23:20 rpmi: perl-Try-Tiny-0.30-alt1 1514318058 installed <13>Dec 12 11:23:20 rpmi: perl-IO-Socket-IP-0.39-alt1 1494508514 installed <13>Dec 12 11:23:20 rpmi: perl-Compress-Raw-Bzip2-2.093-alt1 sisyphus+242765.100.1.1 1576089363 installed <13>Dec 12 11:23:20 rpmi: perl-HTML-Tagset-3.20-alt2 1317725093 installed <13>Dec 12 11:23:20 rpmi: perl-Filter-1.59-alt1.1 sisyphus+219907.400.1.1 1548343389 installed <13>Dec 12 11:23:20 rpmi: perl-Encode-3.01-alt1 sisyphus+224923.100.1.1 1552474122 installed <13>Dec 12 11:23:20 rpmi: perl-URI-1.76-alt1 sisyphus+220243.100.1.1 1548863244 installed <13>Dec 12 11:23:20 rpmi: perl-IO-Compress-2.089-alt1 sisyphus+240416.100.1.1 1573134826 installed <13>Dec 12 11:23:20 rpmi: perl-Net-HTTP-6.19-alt1 sisyphus+229756.100.1.1 1558454558 installed <13>Dec 12 11:23:20 rpmi: perl-HTML-Parser-3.72-alt1.2 sisyphus+219907.600.1.1 1548343581 installed <13>Dec 12 11:23:20 rpmi: perl-WWW-RobotRules-6.02-alt1 1329756211 installed <13>Dec 12 11:23:20 rpmi: perl-Encode-Locale-1.05-alt1 1444608613 installed <13>Dec 12 11:23:20 rpmi: perl-IO-HTML-1.001-alt1 1404821752 installed <13>Dec 12 11:23:20 rpmi: perl-HTTP-Message-6.18-alt1 1528288416 installed <13>Dec 12 11:23:20 rpmi: perl-HTTP-Cookies-6.08-alt1 sisyphus+242242.100.1.1 1575454022 installed <13>Dec 12 11:23:20 rpmi: perl-HTTP-Negotiate-6.01-alt1 1329760563 installed <13>Dec 12 11:23:20 rpmi: perl-XML-Writer-0.625-alt1 1402417374 installed <13>Dec 12 11:23:20 rpmi: perl-Term-ANSIColor-4.06-alt1 1479407083 installed <13>Dec 12 11:23:20 rpmi: perl-Data-Dump-1.23-alt1 1444601978 installed <13>Dec 12 11:23:20 rpmi: perl-libwww-6.43-alt1 sisyphus+241824.100.1.3 1574885081 installed <13>Dec 12 11:23:20 rpmi: perl-XML-Parser-2.44-alt2.2 sisyphus+219907.1300.1.1 1548343835 installed <13>Dec 12 11:23:20 rpmi: libdb4.7-devel-4.7.25-alt9 1490438479 installed <13>Dec 12 11:23:21 rpmi: perl-devel-1:5.28.2-alt1 sisyphus+230063.100.1.1 1558785441 installed <13>Dec 12 11:23:21 rpmi: hwinfo-utils-21.23-alt1.1 sisyphus+223919.100.1.1 1551893139 installed <13>Dec 12 11:23:21 rpmi: gnustep-dirs-1.0-alt2 1355065931 installed <13>Dec 12 11:23:21 rpmi: gdb-common-8.3-alt1 sisyphus+235548.200.3.1 1565081615 installed <13>Dec 12 11:23:21 rpmi: djvu-common-3.5.25.3-alt1 1365826139 installed <13>Dec 12 11:23:21 rpmi: libdjvu-3.5.25.3-alt1 1365826139 installed <13>Dec 12 11:23:21 rpmi: libImageMagick6.6-6.9.10.74-alt1 sisyphus+241601.100.1.1 1574675424 installed <13>Dec 12 11:23:21 rpmi: libgnustep-gui-0.24.0-alt8.svn20140223 sisyphus+238768.1000.17.1 1571466019 installed <13>Dec 12 11:23:22 rpmi: llvm7.0-libs-7.0.1-alt4.rel sisyphus+229878.100.2.1 1558604700 installed <13>Dec 12 11:23:22 rpmi: clang7.0-libs-7.0.1-alt4.rel sisyphus+229878.100.2.1 1558604700 installed <13>Dec 12 11:23:22 rpmi: libverto-0.3.0-alt1_7 sisyphus+225932.100.1.1 1553994919 installed <13>Dec 12 11:23:22 rpmi: libkeyutils-1.6-alt2 sisyphus+226520.100.2.1 1554512089 installed <13>Dec 12 11:23:22 rpmi: python-base-2.7.17-alt3 sisyphus+240580.60.5.1 1573516905 installed <13>Dec 12 11:23:22 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Dec 12 11:23:22 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Dec 12 11:23:23 rpmi: ca-certificates-2019.10.28-alt1 sisyphus+239875.300.1.1 1572267834 installed <13>Dec 12 11:23:23 rpmi: ca-trust-0.1.2-alt1 sisyphus+233348.100.1.1 1561653823 installed <13>Dec 12 11:23:23 rpmi: p11-kit-trust-0.23.15-alt1 sisyphus+226408.100.2.1 1554288204 installed <13>Dec 12 11:23:23 rpmi: libcrypto1.1-1.1.1d-alt1.1 sisyphus+237931.100.2.1 1569235729 installed <13>Dec 12 11:23:23 rpmi: libssl1.1-1.1.1d-alt1.1 sisyphus+237931.100.2.1 1569235729 installed <13>Dec 12 11:23:23 rpmi: python3-3.7.4-alt2 sisyphus+239418.100.1.1 1571389913 installed <13>Dec 12 11:23:23 rpmi: libpython3-3.7.4-alt2 sisyphus+239418.100.1.1 1571389913 installed <13>Dec 12 11:23:23 rpmi: python3-base-3.7.4-alt2 sisyphus+239418.100.1.1 1571389913 installed <13>Dec 12 11:23:24 rpmi: gdb-8.3-alt1 sisyphus+235548.200.3.1 1565081611 installed <13>Dec 12 11:23:24 rpmi: gnustep-make-2.6.6-alt20.svn20140202 sisyphus+221065.400.4.2 1549734566 installed <13>Dec 12 11:23:24 rpmi: gnustep-base-1:1.24.6-alt8.svn20140226 sisyphus+238768.600.16.1 1571431725 installed <13>Dec 12 11:23:24 rpmi: gnustep-base-devel-1:1.24.6-alt8.svn20140226 sisyphus+238768.600.16.1 1571431725 installed <86>Dec 12 11:23:24 groupadd[4745]: group added to /etc/group: name=_keytab, GID=499 <86>Dec 12 11:23:24 groupadd[4745]: group added to /etc/gshadow: name=_keytab <86>Dec 12 11:23:24 groupadd[4745]: new group: name=_keytab, GID=499 <13>Dec 12 11:23:24 rpmi: libkrb5-1.16.3-alt1 sisyphus+223678.100.1.1 1551746516 installed <13>Dec 12 11:23:24 rpmi: libtirpc-1.0.3-alt1 1532008017 installed <13>Dec 12 11:23:24 rpmi: libnsl2-1.1.0-alt1_1 1511548749 installed <13>Dec 12 11:23:24 rpmi: python-modules-encodings-2.7.17-alt3 sisyphus+240580.200.5.1 1573517321 installed <13>Dec 12 11:23:24 rpmi: python-modules-compiler-2.7.17-alt3 sisyphus+240580.200.5.1 1573517321 installed <13>Dec 12 11:23:24 rpmi: python-modules-email-2.7.17-alt3 sisyphus+240580.200.5.1 1573517321 installed <13>Dec 12 11:23:24 rpmi: python-modules-unittest-2.7.17-alt3 sisyphus+240580.200.5.1 1573517321 installed <13>Dec 12 11:23:24 rpmi: python-modules-nis-2.7.17-alt3 sisyphus+240580.200.5.1 1573517321 installed <13>Dec 12 11:23:24 rpmi: python-modules-2.7.17-alt3 sisyphus+240580.200.5.1 1573517321 installed <13>Dec 12 11:23:28 rpmi: clang7.0-7.0.1-alt4.rel sisyphus+229878.100.2.1 1558604700 installed <13>Dec 12 11:23:28 rpmi: alsa-ucm-conf-1.2.1.2-alt1 sisyphus+242075.200.1.1 1575268256 installed <13>Dec 12 11:23:28 rpmi: alsa-topology-conf-1.2.1-alt1 sisyphus+240942.100.4.1 1574247451 installed <13>Dec 12 11:23:28 rpmi: libalsa-1:1.2.1.2-alt1 sisyphus+242075.100.1.1 1575268262 installed <13>Dec 12 11:23:29 rpmi: flite-2.1-alt1 sisyphus+222718.100.1.1 1551026084 installed <13>Dec 12 11:23:29 rpmi: libao-1:1.2.2-alt3 1512129138 installed <13>Dec 12 11:23:29 rpmi: gnustep-gui-0.24.0-alt8.svn20140223 sisyphus+238768.1000.17.1 1571466019 installed <13>Dec 12 11:23:29 rpmi: gnustep-gui-devel-0.24.0-alt8.svn20140223 sisyphus+238768.1000.17.1 1571466019 installed <13>Dec 12 11:23:29 rpmi: clang7.0-devel-7.0.1-alt4.rel sisyphus+229878.100.2.1 1558604700 installed <13>Dec 12 11:23:29 rpmi: gnustep-make-devel-2.6.6-alt20.svn20140202 sisyphus+221065.400.4.2 1549734565 installed <13>Dec 12 11:23:29 rpmi: libgnutls-devel-3.6.11-alt1 sisyphus+242147.100.1.1 1575311041 installed <13>Dec 12 11:23:29 rpmi: libxslt-devel-1.1.34-alt1 sisyphus+240826.100.1.1 1573801860 installed <13>Dec 12 11:23:29 rpmi: libicu-devel-1:6.5.1-alt1 sisyphus+238768.100.16.1 1571427455 installed <13>Dec 12 11:23:29 rpmi: libgcrypt-devel-1.8.5-alt3 sisyphus+239622.100.1.1 1571746654 installed <13>Dec 12 11:23:29 rpmi: zlib-devel-1.2.11-alt1 sisyphus+221902.6000.4.1 1550601058 installed <13>Dec 12 11:23:29 rpmi: libgmp-devel-6.1.2-alt3 sisyphus+229304.40.2.1 1557770992 installed <13>Dec 12 11:23:29 rpmi: libffi-devel-1:3.2.1-alt2 1528881777 installed Building target platforms: i586 Building for target i586 Wrote: /usr/src/in/nosrpm/gnustep-BioCocoa-2.2.2-alt3.nosrc.rpm Installing gnustep-BioCocoa-2.2.2-alt3.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.34163 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf gnustep-BioCocoa-2.2.2 + echo 'Source #0 (gnustep-BioCocoa-2.2.2.tar):' Source #0 (gnustep-BioCocoa-2.2.2.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/gnustep-BioCocoa-2.2.2.tar + cd gnustep-BioCocoa-2.2.2 + /bin/chmod -c -Rf u+rwX,go-w . + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.16972 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd gnustep-BioCocoa-2.2.2 + . /usr/share/GNUstep/Makefiles/GNUstep.sh ++ '[' -n '' ']' ++ GNUSTEP_MAKE_STRICT_V2_MODE=no ++ '[' -z '' ']' ++ GNUSTEP_CONFIG_FILE=/etc/GNUstep/GNUstep.conf ++ '[' -z '' ']' ++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf ++ '[' -f /etc/GNUstep/GNUstep.conf ']' ++ . /etc/GNUstep/GNUstep.conf +++ GNUSTEP_SYSTEM_ROOT=/usr +++ GNUSTEP_LOCAL_ROOT=/usr +++ GNUSTEP_NETWORK_ROOT=/usr +++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf +++ GNUSTEP_USER_DIR=GNUstep +++ GNUSTEP_USER_DEFAULTS_DIR=GNUstep/Defaults +++ GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles +++ GNUSTEP_SYSTEM_USERS_DIR=/home +++ GNUSTEP_NETWORK_USERS_DIR=/home +++ GNUSTEP_LOCAL_USERS_DIR=/home +++ GNUSTEP_SYSTEM_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_SYSTEM_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_SYSTEM_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_SYSTEM_TOOLS=/usr/bin +++ GNUSTEP_SYSTEM_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_SYSTEM_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_SYSTEM_HEADERS=/usr/include +++ GNUSTEP_SYSTEM_LIBRARIES=/usr/lib +++ GNUSTEP_SYSTEM_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_SYSTEM_DOC_MAN=/usr/share/man +++ GNUSTEP_SYSTEM_DOC_INFO=/usr/share/info +++ GNUSTEP_NETWORK_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_NETWORK_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_NETWORK_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_NETWORK_TOOLS=/usr/bin +++ GNUSTEP_NETWORK_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_NETWORK_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_NETWORK_HEADERS=/usr/include +++ GNUSTEP_NETWORK_LIBRARIES=/usr/lib +++ GNUSTEP_NETWORK_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_NETWORK_DOC_MAN=/usr/share/man +++ GNUSTEP_NETWORK_DOC_INFO=/usr/share/info +++ GNUSTEP_LOCAL_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_LOCAL_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_LOCAL_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_LOCAL_TOOLS=/usr/bin +++ GNUSTEP_LOCAL_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_LOCAL_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_LOCAL_HEADERS=/usr/include +++ GNUSTEP_LOCAL_LIBRARIES=/usr/lib +++ GNUSTEP_LOCAL_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_LOCAL_DOC_MAN=/usr/share/man +++ GNUSTEP_LOCAL_DOC_INFO=/usr/share/info +++ GNUSTEP_USER_DIR_APPS=GNUstep/Applications +++ GNUSTEP_USER_DIR_ADMIN_APPS=GNUstep/Applications/Admin +++ GNUSTEP_USER_DIR_WEB_APPS=GNUstep/WebApplications +++ GNUSTEP_USER_DIR_TOOLS=GNUstep/Tools +++ GNUSTEP_USER_DIR_ADMIN_TOOLS=GNUstep/Tools/Admin +++ GNUSTEP_USER_DIR_LIBRARY=GNUstep +++ GNUSTEP_USER_DIR_HEADERS=GNUstep/Headers +++ GNUSTEP_USER_DIR_LIBRARIES=GNUstep/Libraries +++ GNUSTEP_USER_DIR_DOC=GNUstep/Documentation +++ GNUSTEP_USER_DIR_DOC_MAN=GNUstep/Documentation/man +++ GNUSTEP_USER_DIR_DOC_INFO=GNUstep/Documentation/info ++ GNUSTEP_HOME=/usr/src ++ '[' -n .GNUstep.conf ']' ++ case "$GNUSTEP_USER_CONFIG_FILE" in ++ '[' -f /usr/src/.GNUstep.conf ']' ++ '[' no = yes ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ export GNUSTEP_SYSTEM_ROOT GNUSTEP_LOCAL_ROOT GNUSTEP_NETWORK_ROOT ++ '[' no = yes ']' ++ GNUSTEP_FLATTENED=yes ++ export GNUSTEP_FLATTENED ++ GNUSTEP_IS_FLATTENED=yes ++ '[' -z gnu-gnu-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_IS_FLATTENED LIBRARY_COMBO ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ export GNUSTEP_MAKEFILES ++ '[' no = yes ']' ++ '[' -z GNUstep ']' ++ case "$GNUSTEP_USER_DIR" in ++ GNUSTEP_USER_ROOT=/usr/src/GNUstep ++ unset GNUSTEP_USER_DIR ++ export GNUSTEP_USER_ROOT ++ '[' -z '' ']' ++ GNUSTEP_HOST= ++ GNUSTEP_HOST_CPU= ++ GNUSTEP_HOST_VENDOR=alt ++ GNUSTEP_HOST_OS=linux-gnu ++ '[' -z '' ']' +++ pwd ++ tmpdir=/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ cd /tmp +++ /usr/share/GNUstep/Makefiles/config.guess ++ GNUSTEP_HOST=i686-pc-linux-gnu +++ /usr/share/GNUstep/Makefiles/config.sub i686-pc-linux-gnu ++ GNUSTEP_HOST=i686-pc-linux-gnu ++ cd /usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ unset tmpdir ++ '[' -z '' ']' +++ /usr/share/GNUstep/Makefiles/cpu.sh i686-pc-linux-gnu ++ GNUSTEP_HOST_CPU=i686 +++ /usr/share/GNUstep/Makefiles/clean_cpu.sh i686 ++ GNUSTEP_HOST_CPU=ix86 ++ '[' -z alt ']' ++ '[' -z linux-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_HOST GNUSTEP_HOST_CPU GNUSTEP_HOST_VENDOR GNUSTEP_HOST_OS ++ . /usr/share/GNUstep/Makefiles/filesystem.sh +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z GNUstep/Applications ']' +++ '[' -z GNUstep/Applications/Admin ']' +++ '[' -z GNUstep/WebApplications ']' +++ '[' -z GNUstep/Tools ']' +++ '[' -z GNUstep/Tools/Admin ']' +++ '[' -z GNUstep ']' +++ '[' -z GNUstep/Headers ']' +++ '[' -z GNUstep/Libraries ']' +++ '[' -z GNUstep/Documentation ']' +++ '[' -z GNUstep/Documentation/man ']' +++ '[' -z GNUstep/Documentation/info ']' +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "$GNUSTEP_USER_DIR_APPS" in +++ GNUSTEP_USER_APPS=/usr/src/GNUstep/Applications +++ unset GNUSTEP_USER_DIR_APPS +++ case "$GNUSTEP_USER_DIR_ADMIN_APPS" in +++ GNUSTEP_USER_ADMIN_APPS=/usr/src/GNUstep/Applications/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_APPS +++ case "$GNUSTEP_USER_DIR_WEB_APPS" in +++ GNUSTEP_USER_WEB_APPS=/usr/src/GNUstep/WebApplications +++ unset GNUSTEP_USER_DIR_WEB_APPS +++ case "$GNUSTEP_USER_DIR_TOOLS" in +++ GNUSTEP_USER_TOOLS=/usr/src/GNUstep/Tools +++ unset GNUSTEP_USER_DIR_TOOLS +++ case "$GNUSTEP_USER_DIR_ADMIN_TOOLS" in +++ GNUSTEP_USER_ADMIN_TOOLS=/usr/src/GNUstep/Tools/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_TOOLS +++ case "$GNUSTEP_USER_DIR_LIBRARY" in +++ GNUSTEP_USER_LIBRARY=/usr/src/GNUstep +++ unset GNUSTEP_USER_DIR_LIBRARY +++ case "$GNUSTEP_USER_DIR_HEADERS" in +++ GNUSTEP_USER_HEADERS=/usr/src/GNUstep/Headers +++ unset GNUSTEP_USER_DIR_HEADERS +++ case "$GNUSTEP_USER_DIR_LIBRARIES" in +++ GNUSTEP_USER_LIBRARIES=/usr/src/GNUstep/Libraries +++ unset GNUSTEP_USER_DIR_LIBRARIES +++ case "$GNUSTEP_USER_DIR_DOC" in +++ GNUSTEP_USER_DOC=/usr/src/GNUstep/Documentation +++ unset GNUSTEP_USER_DIR_DOC +++ case "$GNUSTEP_USER_DIR_DOC_MAN" in +++ GNUSTEP_USER_DOC_MAN=/usr/src/GNUstep/Documentation/man +++ unset GNUSTEP_USER_DIR_DOC_MAN +++ case "$GNUSTEP_USER_DIR_DOC_INFO" in +++ GNUSTEP_USER_DOC_INFO=/usr/src/GNUstep/Documentation/info +++ unset GNUSTEP_USER_DIR_DOC_INFO ++ unset GNUSTEP_HOME ++ fixup_paths=no +++ echo /usr/share/GNUstep/Makefiles +++ sed 's|^[a-zA-Z]:/.*$||' ++ path_check=/usr/share/GNUstep/Makefiles ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ unset path_check ++ '[' no = yes ']' ++ '[' -z /usr:/usr/src/GNUstep ']' +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Tools /usr/bin /usr/bin /usr/bin no ++ GNUSTEP_TOOLS_PATHLIST=/usr/bin:/usr/src/GNUstep/Tools ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/src/GNUstep/Tools/Admin -a -w /usr/src/GNUstep/Tools/Admin ']' ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/bin ++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/bin: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/src/GNUstep/Tools ++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/src/GNUstep/Tools: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_TOOLS_PATHLIST ++ export PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Libraries /usr/lib /usr/lib /usr/lib no ++ GNUSTEP_LIBRARIES_PATHLIST=/usr/lib:/usr/src/GNUstep/Libraries ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/lib ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib: ++ grep -v :/usr/lib: ++ export LD_LIBRARY_PATH ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/src/GNUstep/Libraries ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib: ++ grep -v :/usr/src/GNUstep/Libraries: ++ export LD_LIBRARY_PATH ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARIES_PATHLIST ++ case "$GNUSTEP_HOST_OS" in +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep /usr/lib/GNUstep /usr/lib/GNUstep /usr/lib/GNUstep no ++ GNUSTEP_LIBRARY_PATHLIST=/usr/lib/GNUstep:/usr/src/GNUstep ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/lib/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java ']' ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java: ++ grep -v :/usr/lib/GNUstep/Libraries/Java: ++ path_fragment=/usr/lib/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile: ++ grep -v :/usr/lib/GNUstep/Libraries/Guile: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/src/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java ']' ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java: ++ grep -v :/usr/src/GNUstep/Libraries/Java: ++ path_fragment=/usr/src/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile: ++ grep -v :/usr/src/GNUstep/Libraries/Guile: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARY_PATHLIST ++ export CLASSPATH ++ export GUILE_LOAD_PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Documentation/info /usr/share/info /usr/share/info /usr/share/info no ++ GNUSTEP_INFO_PATHLIST=/usr/share/info:/usr/src/GNUstep/Documentation/info ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/share/info: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/src/GNUstep/Documentation/info: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset GNUSTEP_INFO_PATHLIST ++ export INFOPATH ++ '[' -n '' ']' ++ '[' no = yes ']' ++ unset GNUSTEP_MAKE_STRICT_V2_MODE ++ '[' -z '' ']' ++ unset GNUSTEP_CONFIG_FILE ++ unset GNUSTEP_KEEP_CONFIG_FILE ++ '[' -z '' ']' ++ unset GNUSTEP_USER_CONFIG_FILE ++ unset GNUSTEP_KEEP_USER_CONFIG_FILE ++ unset GNUSTEP_USER_DEFAULTS_DIR ++ unset GNUSTEP_SYSTEM_APPS ++ unset GNUSTEP_SYSTEM_ADMIN_APPS ++ unset GNUSTEP_SYSTEM_WEB_APPS ++ unset GNUSTEP_SYSTEM_TOOLS ++ unset GNUSTEP_SYSTEM_ADMIN_TOOLS ++ unset GNUSTEP_SYSTEM_LIBRARY ++ unset GNUSTEP_SYSTEM_HEADERS ++ unset GNUSTEP_SYSTEM_LIBRARIES ++ unset GNUSTEP_SYSTEM_DOC ++ unset GNUSTEP_SYSTEM_DOC_MAN ++ unset GNUSTEP_SYSTEM_DOC_INFO ++ unset GNUSTEP_NETWORK_APPS ++ unset GNUSTEP_NETWORK_ADMIN_APPS ++ unset GNUSTEP_NETWORK_WEB_APPS ++ unset GNUSTEP_NETWORK_TOOLS ++ unset GNUSTEP_NETWORK_ADMIN_TOOLS ++ unset GNUSTEP_NETWORK_LIBRARY ++ unset GNUSTEP_NETWORK_HEADERS ++ unset GNUSTEP_NETWORK_LIBRARIES ++ unset GNUSTEP_NETWORK_DOC ++ unset GNUSTEP_NETWORK_DOC_MAN ++ unset GNUSTEP_NETWORK_DOC_INFO ++ unset GNUSTEP_LOCAL_APPS ++ unset GNUSTEP_LOCAL_ADMIN_APPS ++ unset GNUSTEP_LOCAL_WEB_APPS ++ unset GNUSTEP_LOCAL_TOOLS ++ unset GNUSTEP_LOCAL_ADMIN_TOOLS ++ unset GNUSTEP_LOCAL_LIBRARY ++ unset GNUSTEP_LOCAL_HEADERS ++ unset GNUSTEP_LOCAL_LIBRARIES ++ unset GNUSTEP_LOCAL_DOC ++ unset GNUSTEP_LOCAL_DOC_MAN ++ unset GNUSTEP_LOCAL_DOC_INFO ++ unset GNUSTEP_USER_APPS ++ unset GNUSTEP_USER_ADMIN_APPS ++ unset GNUSTEP_USER_WEB_APPS ++ unset GNUSTEP_USER_TOOLS ++ unset GNUSTEP_USER_ADMIN_TOOLS ++ unset GNUSTEP_USER_LIBRARY ++ unset GNUSTEP_USER_HEADERS ++ unset GNUSTEP_USER_LIBRARIES ++ unset GNUSTEP_USER_DOC ++ unset GNUSTEP_USER_DOC_MAN ++ unset GNUSTEP_USER_DOC_INFO ++ unset GNUSTEP_SYSTEM_USERS_DIR ++ unset GNUSTEP_LOCAL_USERS_DIR ++ unset GNUSTEP_NETWORK_USERS_DIR ++ '[' -n '' ']' + make -j8 messages=yes debug=yes strip=no shared=yes 'CONFIG_SYSTEM_LIBS=-lgnustep-base -lobjc2' make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' This is gnustep-make 2.6.6. Type 'gmake print-gnustep-make-help' for help. make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' Making build-headers in subprojects of framework BioCocoa... Making build-headers in subprojects of subproject BCFoundation... Making build-headers for subproject BCAlignment... /usr/share/GNUstep/Makefiles/mkinstalldirs ../../BioCocoa.framework/Versions/2/Headers /bin/install -c -p -m 644 BCPairwiseAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h /bin/install -c -p -m 644 BCScoreMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCScoreMatrix.h /bin/install -c -p -m 644 BCSequenceAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceAlignment.h Making build-headers for subproject BCAnalysis... /bin/install -c -p -m 644 BCMCP.h ../../BioCocoa.framework/Versions/2/Headers/BCMCP.h /bin/install -c -p -m 644 BCSuffixArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSuffixArray.h Making build-headers for subproject BCGeneExpression... /bin/install -c -p -m 644 BCSeries.h ../../BioCocoa.framework/Versions/2/Headers/BCSeries.h /bin/install -c -p -m 644 BCSample.h ../../BioCocoa.framework/Versions/2/Headers/BCSample.h /bin/install -c -p -m 644 BCPlatform.h ../../BioCocoa.framework/Versions/2/Headers/BCPlatform.h /bin/install -c -p -m 644 BCParseSOFT.h ../../BioCocoa.framework/Versions/2/Headers/BCParseSOFT.h Making build-headers for subproject BCGeneticCode... /bin/install -c -p -m 644 BCCodonDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonDNA.h /bin/install -c -p -m 644 BCCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCCodon.h /bin/install -c -p -m 644 BCCodonRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonRNA.h /bin/install -c -p -m 644 BCGeneticCode.h ../../BioCocoa.framework/Versions/2/Headers/BCGeneticCode.h Making build-headers for subproject BCProteinStructure... /bin/install -c -p -m 644 BCAtom.h ../../BioCocoa.framework/Versions/2/Headers/BCAtom.h /bin/install -c -p -m 644 BCProteinStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCProteinStructure.h /bin/install -c -p -m 644 BCSecondaryStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSecondaryStructure.h /bin/install -c -p -m 644 BCChain.h ../../BioCocoa.framework/Versions/2/Headers/BCChain.h /bin/install -c -p -m 644 BCResidue.h ../../BioCocoa.framework/Versions/2/Headers/BCResidue.h /bin/install -c -p -m 644 BCSequenceStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceStructure.h Making build-headers for subproject BCSequence... /bin/install -c -p -m 644 BCAnnotation.h ../../BioCocoa.framework/Versions/2/Headers/BCAnnotation.h /bin/install -c -p -m 644 BCSequence.h ../../BioCocoa.framework/Versions/2/Headers/BCSequence.h /bin/install -c -p -m 644 BCSequenceArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceArray.h /bin/install -c -p -m 644 BCSequenceCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceCodon.h Making build-headers for subproject BCSequenceIO... /bin/install -c -p -m 644 BCSequenceReader.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceReader.h /bin/install -c -p -m 644 BCSequenceWriter.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceWriter.h /bin/install -c -p -m 644 BCCachedSequenceFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedSequenceFile.h /bin/install -c -p -m 644 BCCachedFastaFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedFastaFile.h Making build-headers for subproject BCSymbol... /bin/install -c -p -m 644 BCAminoAcid.h ../../BioCocoa.framework/Versions/2/Headers/BCAminoAcid.h /bin/install -c -p -m 644 BCNucleotide.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotide.h /bin/install -c -p -m 644 BCSymbol.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbol.h /bin/install -c -p -m 644 BCNucleotideDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideDNA.h /bin/install -c -p -m 644 BCNucleotideRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideRNA.h /bin/install -c -p -m 644 BCSymbolSet.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbolSet.h Making build-headers for subproject BCTools... /bin/install -c -p -m 644 BCSequenceTool.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceTool.h /bin/install -c -p -m 644 BCToolDigest.h ../../BioCocoa.framework/Versions/2/Headers/BCToolDigest.h /bin/install -c -p -m 644 BCToolHydropathyCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolHydropathyCalculator.h /bin/install -c -p -m 644 BCToolMassCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolMassCalculator.h /bin/install -c -p -m 644 BCToolComplement.h ../../BioCocoa.framework/Versions/2/Headers/BCToolComplement.h /bin/install -c -p -m 644 BCToolSequenceFinder.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSequenceFinder.h /bin/install -c -p -m 644 BCToolSymbolCounter.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSymbolCounter.h /bin/install -c -p -m 644 BCToolTranslator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslator.h /bin/install -c -p -m 644 BCToolTranslatorDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslatorDNA.h Making build-headers for subproject BCUtils... /bin/install -c -p -m 644 BCDataMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCDataMatrix.h /bin/install -c -p -m 644 BCUtilData.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilData.h /bin/install -c -p -m 644 BCUtilStrings.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilStrings.h Making build-headers for subproject BCFoundation... /bin/install -c -p -m 644 BCFoundation.h ../BioCocoa.framework/Versions/2/Headers/BCFoundation.h /bin/install -c -p -m 644 BCFoundationDefines.h ../BioCocoa.framework/Versions/2/Headers/BCFoundationDefines.h /bin/install -c -p -m 644 BCStringDefinitions.h ../BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h /bin/install -c -p -m 644 BCPreferences.h ../BioCocoa.framework/Versions/2/Headers/BCPreferences.h Making build-headers for framework BioCocoa... /usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \ touch derived_src/.stamp /usr/share/GNUstep/Makefiles/mkinstalldirs BioCocoa.framework/Versions/2/Resources cd ./BioCocoa.framework/Versions; \ rm -f Current; \ ln -s 2 Current cd ./BioCocoa.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "BioCocoa" ]; then \ rm -f ./BioCocoa; \ ln -s ../BioCocoa.framework/Headers \ ./BioCocoa; \ fi make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' Making all in subprojects of framework BioCocoa... gmake[1]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[1]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation' Making all in subprojects of subproject BCFoundation... gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAlignment' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAlignment' Making all for subproject BCAlignment... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCAlignment.obj/ gcc BCSequenceAlignment.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAlignment.obj/BCSequenceAlignment.m.o gcc BCScoreMatrix.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAlignment.obj/BCScoreMatrix.m.o gcc BCPairwiseAlignment.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAlignment.obj/BCPairwiseAlignment.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCAlignment.obj/BCPairwiseAlignment.m.o obj/BCAlignment.obj/BCScoreMatrix.m.o obj/BCAlignment.obj/BCSequenceAlignment.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAnalysis' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAnalysis' Making all for subproject BCAnalysis... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCAnalysis.obj/ gcc BCSuffixArray.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAnalysis.obj/BCSuffixArray.m.o BCSuffixArray.m: In function '-[BCSuffixArray dumpSuffixArray]': BCSuffixArray.m:896:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 896 | fread(&sa1Offset, sizeof(int), 1, sa1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:897:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 897 | fread(&sa1File, sizeof(int), 1, sa1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:932:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 932 | fread(&sa1Offset, sizeof(int), 1, sa1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:933:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 933 | fread(&sa1File, sizeof(int), 1, sa1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m: In function '-[BCSuffixArrayUnionEnumerator nextSuffixPosition:sequence:suffixArray:]': BCSuffixArray.m:1464:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1464 | fread(&(suffixPositions[i]), sizeof(int), 1, arrayFiles[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:1465:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1465 | fread(&(suffixSequences[i]), sizeof(int), 1, arrayFiles[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:1598:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1598 | fread(&(suffixPositions[currentSuffix]), sizeof(int), 1, arrayFiles[currentSuffix]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:1599:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1599 | fread(&(suffixSequences[currentSuffix]), sizeof(int), 1, arrayFiles[currentSuffix]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc BCMCP.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAnalysis.obj/BCMCP.m.o BCMCP.m: In function '+[BCMCP mcpToFile:suffixArray:withSuffixArray:lowerBound:]': BCMCP.m:160:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 160 | fread(&sa1Offset, sizeof(int), 1, sa1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:161:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 161 | fread(&sa1File, sizeof(int), 1, sa1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:163:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 163 | fread(&sa2Offset, sizeof(int), 1, sa2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:164:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 164 | fread(&sa2File, sizeof(int), 1, sa2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:334:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 334 | fread(&sa2Offset, sizeof(int), 1, sa2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:335:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 335 | fread(&sa2File, sizeof(int), 1, sa2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:352:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 352 | fread(&sa1Offset, sizeof(int), 1, sa1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:353:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 353 | fread(&sa1File, sizeof(int), 1, sa1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:358:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 358 | fread(&sa2Offset, sizeof(int), 1, sa2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:359:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 359 | fread(&sa2File, sizeof(int), 1, sa2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:366:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 366 | fread(&sa2Offset, sizeof(int), 1, sa2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:367:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 367 | fread(&sa2File, sizeof(int), 1, sa2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP intersectToFile:withMCP:]': BCMCP.m:486:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 486 | fread(&mcp1Length, sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:487:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 487 | fread(&mcp1NumFiles, sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:489:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 489 | fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:490:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 490 | fread(&(mcp1File[i]), sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:514:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 514 | fread(&mcp2Length, sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:515:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 515 | fread(&mcp2NumFiles, sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:517:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 517 | fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:518:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 518 | fread(&(mcp2File[i]), sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:735:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 735 | fread(&mcp1Length, sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:736:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 736 | fread(&mcp1NumFiles, sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:738:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 738 | fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:739:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 739 | fread(&(mcp1File[i]), sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:762:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 762 | fread(&mcp2Length, sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:763:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 763 | fread(&mcp2NumFiles, sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:765:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 765 | fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:766:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 766 | fread(&(mcp2File[i]), sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP unionToFile:withMCP:]': BCMCP.m:910:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 910 | fread(&mcp1Length, sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:911:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 911 | fread(&mcp1NumFiles, sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:913:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 913 | fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:914:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 914 | fread(&(mcp1File[i]), sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:936:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 936 | fread(&mcp2Length, sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:937:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 937 | fread(&mcp2NumFiles, sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:939:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 939 | fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:940:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 940 | fread(&(mcp2File[i]), sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1093:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1093 | fread(&mcp1Length, sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1094:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1094 | fread(&mcp1NumFiles, sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1096:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1096 | fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1097:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1097 | fread(&(mcp1File[i]), sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1123:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1123 | fread(&mcp2Length, sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1124:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1124 | fread(&mcp2NumFiles, sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1126:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1126 | fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1127:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1127 | fread(&(mcp2File[i]), sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1167:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1167 | fread(&mcp1Length, sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1168:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1168 | fread(&mcp1NumFiles, sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1170:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1170 | fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1171:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1171 | fread(&(mcp1File[i]), sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1186:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1186 | fread(&mcp2Length, sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1187:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1187 | fread(&mcp2NumFiles, sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1189:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1189 | fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1190:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1190 | fread(&(mcp2File[i]), sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1222:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1222 | fread(&mcp2Length, sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1223:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1223 | fread(&mcp2NumFiles, sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1225:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1225 | fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1226:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1226 | fread(&(mcp2File[i]), sizeof(int), 1, mcp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1239:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1239 | fread(&mcp1Length, sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1240:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1240 | fread(&mcp1NumFiles, sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1242:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1242 | fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1243:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1243 | fread(&(mcp1File[i]), sizeof(int), 1, mcp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP trimToFile:]': BCMCP.m:1272:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1272 | fread(&mcpLength, sizeof(int), 1, mcp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1273:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1273 | fread(&mcpNumFiles, sizeof(int), 1, mcp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1275:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1275 | fread(&(mcpOffset[i]), sizeof(int), 1, mcp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1276:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1276 | fread(&(mcpFile[i]), sizeof(int), 1, mcp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP outputFormat:withMinimumLength:]': BCMCP.m:1481:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1481 | fread(&mcpLength, sizeof(int), 1, mcp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1482:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1482 | fread(&mcpNumFiles, sizeof(int), 1, mcp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1485:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1485 | fread(&(mcpOffset[i]), sizeof(int), 1, mcp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1486:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1486 | fread(&(mcpFile[i]), sizeof(int), 1, mcp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1603:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1603 | fread(&mcpLength, sizeof(int), 1, mcp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1604:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1604 | fread(&mcpNumFiles, sizeof(int), 1, mcp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1606:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1606 | fread(&(mcpOffset[i]), sizeof(int), 1, mcp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1607:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 1607 | fread(&(mcpFile[i]), sizeof(int), 1, mcp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCAnalysis.obj/BCMCP.m.o obj/BCAnalysis.obj/BCSuffixArray.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneExpression' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneExpression' Making all for subproject BCGeneExpression... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCGeneExpression.obj/ gcc BCPlatform.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCPlatform.m.o gcc BCSeries.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCSeries.m.o gcc BCSample.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCSample.m.o gcc BCParseSOFT.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCParseSOFT.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCGeneExpression.obj/BCSeries.m.o obj/BCGeneExpression.obj/BCSample.m.o obj/BCGeneExpression.obj/BCPlatform.m.o obj/BCGeneExpression.obj/BCParseSOFT.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode' Making all for subproject BCGeneticCode... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCGeneticCode.obj/ gcc BCCodon.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCCodon.m.o gcc BCGeneticCode.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCGeneticCode.m.o BCGeneticCode.m: In function '+[BCGeneticCode priv:createCodonArraysFromDictionary:]': BCGeneticCode.m:221:23: warning: variable 'RNACodon' set but not used [-Wunused-but-set-variable] 221 | BCCodon *aCodon, *RNACodon; | ^~~~~~~~ gcc BCCodonDNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCCodonDNA.m.o gcc BCCodonRNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCCodonRNA.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCGeneticCode.obj/BCCodonDNA.m.o obj/BCGeneticCode.obj/BCCodon.m.o obj/BCGeneticCode.obj/BCCodonRNA.m.o obj/BCGeneticCode.obj/BCGeneticCode.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCProteinStructure' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCProteinStructure' Making all for subproject BCProteinStructure... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCProteinStructure.obj/ gcc BCSecondaryStructure.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCSecondaryStructure.m.o gcc BCChain.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCChain.m.o gcc BCProteinStructure.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCProteinStructure.m.o gcc BCAtom.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCAtom.m.o gcc BCSequenceStructure.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCSequenceStructure.m.o gcc BCResidue.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCResidue.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCProteinStructure.obj/BCAtom.m.o obj/BCProteinStructure.obj/BCProteinStructure.m.o obj/BCProteinStructure.obj/BCSecondaryStructure.m.o obj/BCProteinStructure.obj/BCChain.m.o obj/BCProteinStructure.obj/BCResidue.m.o obj/BCProteinStructure.obj/BCSequenceStructure.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequence' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequence' Making all for subproject BCSequence... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCSequence.obj/ gcc BCAnnotation.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCAnnotation.m.o gcc BCSequence.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCSequence.m.o gcc BCSequenceArray.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCSequenceArray.m.o gcc BCSequenceCodon.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCSequenceCodon.m.o BCSequenceCodon.m: In function '-[BCSequenceCodon openReadingFramesLongerThanCutoff:]': BCSequenceCodon.m:301:16: warning: 'inORF' may be used uninitialized in this function [-Wmaybe-uninitialized] 301 | if ( inORF ) | ^ gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCSequence.obj/BCAnnotation.m.o obj/BCSequence.obj/BCSequence.m.o obj/BCSequence.obj/BCSequenceArray.m.o obj/BCSequence.obj/BCSequenceCodon.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO' Making all for subproject BCSequenceIO... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCSequenceIO.obj/ gcc BCSequenceWriter.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCSequenceWriter.m.o gcc BCCachedSequenceFile.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCCachedSequenceFile.m.o gcc BCSequenceReader.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCSequenceReader.m.o BCSequenceReader.m: In function '-[BCSequenceReader readFileUsingText:]': BCSequenceReader.m:167:3: warning: no '-initWithRTF:documentAttributes:' method found 167 | NSAttributedString *rtfstring = [[NSAttributedString alloc] initWithRTF: [entryString dataUsingEncoding: NSUTF8StringEncoding] documentAttributes: nil]; | ^~~~~~~~~~~~~~~~~~ BCSequenceReader.m:167:3: warning: (Messages without a matching method signature BCSequenceReader.m:167:3: warning: will be assumed to return 'id' and accept BCSequenceReader.m:167:3: warning: '...' as arguments.) BCSequenceReader.m: In function '-[BCSequenceReader readMacVectorFile:]': BCSequenceReader.m:651:18: warning: variable 'annotationsArray' set but not used [-Wunused-but-set-variable] 651 | NSMutableArray *annotationsArray; | ^~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readClustalFile:]': BCSequenceReader.m:798:3: warning: passing argument 2 of 'scanUpToString:intoString:' from incompatible pointer type [-Wincompatible-pointer-types] 798 | [lineScanner scanUpToString:@" " intoString: nil]; | ^ | | | id BCSequenceReader.m:798:3: note: expected 'struct NSString **' but argument is of type 'id' BCSequenceReader.m: In function '-[BCSequenceReader readPhylipFile:]': BCSequenceReader.m:1113:31: warning: variable 'annotationsArray' set but not used [-Wunused-but-set-variable] 1113 | NSMutableArray *linesArray, *annotationsArray, *namesArray, *sequenceArray; | ^~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readSwissProtFile:]': BCSequenceReader.m:426:3: warning: 'sequenceString' may be used uninitialized in this function [-Wmaybe-uninitialized] 426 | newSequence = [BCSequence sequenceWithString: sequenceString]; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readClustalFile:]': BCSequenceReader.m:822:3: warning: 'sequenceRange.location' may be used uninitialized in this function [-Wmaybe-uninitialized] 822 | sequenceString = [line substringFromIndex: sequenceRange.location]; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readFASTQFile:]': BCSequenceReader.m:1310:6: warning: 'seqData' may be used uninitialized in this function [-Wmaybe-uninitialized] 1310 | BCSequence *newSequence = [[BCSequence alloc] initWithData: seqData symbolSet: nil]; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc BCCachedFastaFile.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCCachedFastaFile.m.o BCCachedFastaFile.m: In function '-[BCCachedFastaFile initWithContentsOfFile:]': BCCachedFastaFile.m:58:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 58 | fread(&c, sizeof(char), 1, g1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m:73:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 73 | fread(&c, sizeof(char), 1, g1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m:76:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 76 | fread(&c, sizeof(char), 1, g1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m:97:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 97 | fread(&c, sizeof(char), 1, g1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m: In function '-[BCCachedFastaFile symbols:ForCurrentSequenceAtPosition:ofLength:]': BCCachedFastaFile.m:149:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 149 | fread(&c, sizeof(char), 1, fileHandle); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m: In function '-[BCCachedFastaFile initWithContentsOfFile:]': BCCachedFastaFile.m:104:3: warning: 'filePos' may be used uninitialized in this function [-Wmaybe-uninitialized] 104 | [d setObject: [NSNumber numberWithUnsignedLongLong: (filePos - 1)] forKey: @"end"]; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCSequenceIO.obj/BCSequenceReader.m.o obj/BCSequenceIO.obj/BCSequenceWriter.m.o obj/BCSequenceIO.obj/BCCachedSequenceFile.m.o obj/BCSequenceIO.obj/BCCachedFastaFile.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSymbol' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSymbol' Making all for subproject BCSymbol... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCSymbol.obj/ gcc BCNucleotideDNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCNucleotideDNA.m.o gcc BCAminoAcid.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCAminoAcid.m.o gcc BCNucleotideRNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCNucleotideRNA.m.o gcc BCNucleotide.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCNucleotide.m.o gcc BCSymbol.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCSymbol.m.o gcc BCSymbolSet.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCSymbolSet.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCSymbol.obj/BCAminoAcid.m.o obj/BCSymbol.obj/BCNucleotide.m.o obj/BCSymbol.obj/BCSymbol.m.o obj/BCSymbol.obj/BCNucleotideDNA.m.o obj/BCSymbol.obj/BCNucleotideRNA.m.o obj/BCSymbol.obj/BCSymbolSet.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCTools' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCTools' Making all for subproject BCTools... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCTools.obj/ gcc BCToolTranslator.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolTranslator.m.o gcc BCToolSequenceFinder.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolSequenceFinder.m.o gcc BCToolDigest.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolDigest.m.o gcc BCSequenceTool.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCSequenceTool.m.o gcc BCToolComplement.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolComplement.m.o gcc BCToolMassCalculator.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolMassCalculator.m.o gcc BCToolTranslatorDNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolTranslatorDNA.m.o gcc BCToolSymbolCounter.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolSymbolCounter.m.o gcc BCToolHydropathyCalculator.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolHydropathyCalculator.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCTools.obj/BCSequenceTool.m.o obj/BCTools.obj/BCToolDigest.m.o obj/BCTools.obj/BCToolHydropathyCalculator.m.o obj/BCTools.obj/BCToolMassCalculator.m.o obj/BCTools.obj/BCToolComplement.m.o obj/BCTools.obj/BCToolSequenceFinder.m.o obj/BCTools.obj/BCToolSymbolCounter.m.o obj/BCTools.obj/BCToolTranslator.m.o obj/BCTools.obj/BCToolTranslatorDNA.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCUtils' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCUtils' Making all for subproject BCUtils... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCUtils.obj/ gcc BCUtilData.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCUtils.obj/BCUtilData.m.o gcc BCUtilStrings.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCUtils.obj/BCUtilStrings.m.o BCUtilStrings.m: In function '-[NSString(StringAdditions) stringBeginsWithTwoNumbers]': BCUtilStrings.m:98:2: warning: passing argument 1 of 'scanInt:' from incompatible pointer type [-Wincompatible-pointer-types] 98 | if ([scanner scanInt:nil]) | ^~ | | | id BCUtilStrings.m:98:2: note: expected 'int *' but argument is of type 'id' BCUtilStrings.m:100:3: warning: passing argument 1 of 'scanInt:' from incompatible pointer type [-Wincompatible-pointer-types] 100 | if ([scanner scanInt:nil]) | ^~ | | | id BCUtilStrings.m:100:3: note: expected 'int *' but argument is of type 'id' gcc BCDataMatrix.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCUtils.obj/BCDataMatrix.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCUtils.obj/BCDataMatrix.m.o obj/BCUtils.obj/BCUtilData.m.o obj/BCUtils.obj/BCUtilStrings.m.o ; Making all for subproject BCFoundation... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCFoundation.obj/ gcc BCStringDefinitions.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I. -I./BCAnalysis -I./BCGeneticCode -I./BCProteinStructure -I./BCSequence -I./BCSequenceIO -I./BCSymbol -I./BCTools -I./BCTools/BCDigest -I./BCTools/BCSequenceProperty -I./BCTools/BCSequenceTools -I./BCTools/BCTranslation -I./BCUtils -I./../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCFoundation.obj/BCStringDefinitions.m.o gcc BCPreferences.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I. -I./BCAnalysis -I./BCGeneticCode -I./BCProteinStructure -I./BCSequence -I./BCSequenceIO -I./BCSymbol -I./BCTools -I./BCTools/BCDigest -I./BCTools/BCSequenceProperty -I./BCTools/BCSequenceTools -I./BCTools/BCTranslation -I./BCUtils -I./../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCFoundation.obj/BCPreferences.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCFoundation.obj/BCStringDefinitions.m.o obj/BCFoundation.obj/BCPreferences.m.o BCAlignment/obj/subproject.o BCAnalysis/obj/subproject.o BCGeneExpression/obj/subproject.o BCGeneticCode/obj/subproject.o BCProteinStructure/obj/subproject.o BCSequence/obj/subproject.o BCSequenceIO/obj/subproject.o BCSymbol/obj/subproject.o BCTools/obj/subproject.o BCUtils/obj/subproject.o ; Making all for framework BioCocoa... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BioCocoa.obj/ classes=""; \ for object_file in ./BCFoundation/obj/subproject.o __dummy__; do \ if [ "$object_file" != "__dummy__" ]; then \ sym=`nm -Pg $object_file | sed -n -e '/^__objc_class_name_[A-Za-z0-9_.]* [^U]/ {s/^__objc_class_name_\([A-Za-z0-9_.]*\) [^U].*/\1/p;}'`; \ classes="$classes $sym"; \ fi; \ done; \ classlist=""; \ classarray=""; \ for f in $classes __dummy__ ; do \ if [ "$f" != "__dummy__" ]; then \ if [ "$classlist" = "" ]; then \ classlist="@\"$f\""; \ classarray="(\"$f\""; \ else \ classlist="$classlist, @\"$f\""; \ classarray="$classarray, \"$f\""; \ fi; \ fi; \ done; \ if [ "$classlist" = "" ]; then \ classlist="NULL"; \ classarray="()"; \ else \ classlist="$classlist, NULL"; \ classarray="$classarray)"; \ fi; \ echo "$classarray" > ./derived_src/BioCocoa-class-list; \ echo "#include " > derived_src/NSFramework_BioCocoa.m; \ echo "#include " > derived_src/NSFramework_BioCocoa.m; \ echo "@interface NSFramework_BioCocoa : NSObject" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkEnv;" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkPath;" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkVersion;" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *const*)frameworkClasses;" >> derived_src/NSFramework_BioCocoa.m; \ echo "@end" >> derived_src/NSFramework_BioCocoa.m; \ echo "@implementation NSFramework_BioCocoa" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkEnv { return nil; }" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkPath { return @\"/usr/lib/GNUstep/Frameworks\"; }" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkVersion { return @\"2\"; }" >> derived_src/NSFramework_BioCocoa.m; \ echo "static NSString *allClasses[] = {$classlist};" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *const*)frameworkClasses { return allClasses; }" >> derived_src/NSFramework_BioCocoa.m;\ echo "@end" >> derived_src/NSFramework_BioCocoa.m gcc derived_src/NSFramework_BioCocoa.m -c -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I./derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 -o obj/BioCocoa.obj/NSFramework_BioCocoa.o \ gcc -shared -Wl,-soname,libBioCocoa.so.2 -rdynamic -shared-libgcc -pthread -fexceptions -o ./BioCocoa.framework/Versions/2/./libBioCocoa.so.2.2.2 obj/BioCocoa.obj/NSFramework_BioCocoa.o BCFoundation/obj/subproject.o -L/usr/src/GNUstep/Libraries -L/usr/lib -L/usr/lib -L/usr/lib -L/usr/lib -lgnustep-base -lobjc2 && (cd ./BioCocoa.framework/Versions/2/.; rm -f libBioCocoa.so; if [ "libBioCocoa.so.2" != "libBioCocoa.so.2.2.2" ]; then rm -f libBioCocoa.so.2; ln -s libBioCocoa.so.2.2.2 libBioCocoa.so.2; fi; ln -s libBioCocoa.so.2 libBioCocoa.so; ) || rm -f ./BioCocoa.framework/Versions/2/./libBioCocoa.so.2.2.2 ; \ (cd ./BioCocoa.framework/Versions/2/.; \ rm -f BioCocoa; \ ln -s libBioCocoa.so BioCocoa) \ /usr/bin/ld.default: BCFoundation/obj/subproject.o: in function `_i_BCSuffixArray__constructFromSequenceArray_strand_': /usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAnalysis/BCSuffixArray.m:513: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' for f in BCFoundation/BCSymbol/SymbolTemplates/nucleotides.plist BCFoundation/BCSymbol/SymbolTemplates/aminoacids.plist; do \ if [ -f .//$f -o -d .//$f ]; then \ cp -fr .//$f ./BioCocoa.framework/Versions/2/Resources/; \ else \ echo "Warning: .//$f not found - ignoring"; \ fi; \ done for subproject in BCFoundation; do \ if [ -d $subproject/Resources/Subproject ]; then \ for f in $subproject/Resources/Subproject/*; do \ if [ $f != $subproject'/Resources/Subproject/*' ]; then \ cp -fr $f ./BioCocoa.framework/Versions/2/Resources/; \ fi; \ done; \ fi; \ done (echo "{"; echo ' NOTE = "Automatically generated, do not edit!";'; \ echo " NSExecutable = \"BioCocoa\";"; \ echo " NSMainNibFile = \"\";"; \ echo " NSPrincipalClass = \"BioCocoa\";"; \ echo " Classes = "; \ cat ./derived_src/BioCocoa-class-list; \ echo " ;"; \ echo "}") >BioCocoa.framework/Versions/2/Resources/Info-gnustep.plist if [ -r "" ]; then \ plmerge BioCocoa.framework/Versions/2/Resources/Info-gnustep.plist ; \ fi cd ./BioCocoa.framework/.; \ rm -f BioCocoa libBioCocoa.so; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./BioCocoa short` \ BioCocoa; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./libBioCocoa.so short` \ libBioCocoa.so + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.98057 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/gnustep-BioCocoa-buildroot + : + /bin/rm -rf -- /usr/src/tmp/gnustep-BioCocoa-buildroot + cd gnustep-BioCocoa-2.2.2 + . /usr/share/GNUstep/Makefiles/GNUstep.sh ++ '[' -n '' ']' ++ GNUSTEP_MAKE_STRICT_V2_MODE=no ++ '[' -z '' ']' ++ GNUSTEP_CONFIG_FILE=/etc/GNUstep/GNUstep.conf ++ '[' -z '' ']' ++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf ++ '[' -f /etc/GNUstep/GNUstep.conf ']' ++ . /etc/GNUstep/GNUstep.conf +++ GNUSTEP_SYSTEM_ROOT=/usr +++ GNUSTEP_LOCAL_ROOT=/usr +++ GNUSTEP_NETWORK_ROOT=/usr +++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf +++ GNUSTEP_USER_DIR=GNUstep +++ GNUSTEP_USER_DEFAULTS_DIR=GNUstep/Defaults +++ GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles +++ GNUSTEP_SYSTEM_USERS_DIR=/home +++ GNUSTEP_NETWORK_USERS_DIR=/home +++ GNUSTEP_LOCAL_USERS_DIR=/home +++ GNUSTEP_SYSTEM_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_SYSTEM_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_SYSTEM_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_SYSTEM_TOOLS=/usr/bin +++ GNUSTEP_SYSTEM_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_SYSTEM_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_SYSTEM_HEADERS=/usr/include +++ GNUSTEP_SYSTEM_LIBRARIES=/usr/lib +++ GNUSTEP_SYSTEM_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_SYSTEM_DOC_MAN=/usr/share/man +++ GNUSTEP_SYSTEM_DOC_INFO=/usr/share/info +++ GNUSTEP_NETWORK_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_NETWORK_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_NETWORK_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_NETWORK_TOOLS=/usr/bin +++ GNUSTEP_NETWORK_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_NETWORK_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_NETWORK_HEADERS=/usr/include +++ GNUSTEP_NETWORK_LIBRARIES=/usr/lib +++ GNUSTEP_NETWORK_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_NETWORK_DOC_MAN=/usr/share/man +++ GNUSTEP_NETWORK_DOC_INFO=/usr/share/info +++ GNUSTEP_LOCAL_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_LOCAL_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_LOCAL_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_LOCAL_TOOLS=/usr/bin +++ GNUSTEP_LOCAL_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_LOCAL_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_LOCAL_HEADERS=/usr/include +++ GNUSTEP_LOCAL_LIBRARIES=/usr/lib +++ GNUSTEP_LOCAL_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_LOCAL_DOC_MAN=/usr/share/man +++ GNUSTEP_LOCAL_DOC_INFO=/usr/share/info +++ GNUSTEP_USER_DIR_APPS=GNUstep/Applications +++ GNUSTEP_USER_DIR_ADMIN_APPS=GNUstep/Applications/Admin +++ GNUSTEP_USER_DIR_WEB_APPS=GNUstep/WebApplications +++ GNUSTEP_USER_DIR_TOOLS=GNUstep/Tools +++ GNUSTEP_USER_DIR_ADMIN_TOOLS=GNUstep/Tools/Admin +++ GNUSTEP_USER_DIR_LIBRARY=GNUstep +++ GNUSTEP_USER_DIR_HEADERS=GNUstep/Headers +++ GNUSTEP_USER_DIR_LIBRARIES=GNUstep/Libraries +++ GNUSTEP_USER_DIR_DOC=GNUstep/Documentation +++ GNUSTEP_USER_DIR_DOC_MAN=GNUstep/Documentation/man +++ GNUSTEP_USER_DIR_DOC_INFO=GNUstep/Documentation/info ++ GNUSTEP_HOME=/usr/src ++ '[' -n .GNUstep.conf ']' ++ case "$GNUSTEP_USER_CONFIG_FILE" in ++ '[' -f /usr/src/.GNUstep.conf ']' ++ '[' no = yes ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ export GNUSTEP_SYSTEM_ROOT GNUSTEP_LOCAL_ROOT GNUSTEP_NETWORK_ROOT ++ '[' no = yes ']' ++ GNUSTEP_FLATTENED=yes ++ export GNUSTEP_FLATTENED ++ GNUSTEP_IS_FLATTENED=yes ++ '[' -z gnu-gnu-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_IS_FLATTENED LIBRARY_COMBO ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ export GNUSTEP_MAKEFILES ++ '[' no = yes ']' ++ '[' -z GNUstep ']' ++ case "$GNUSTEP_USER_DIR" in ++ GNUSTEP_USER_ROOT=/usr/src/GNUstep ++ unset GNUSTEP_USER_DIR ++ export GNUSTEP_USER_ROOT ++ '[' -z '' ']' ++ GNUSTEP_HOST= ++ GNUSTEP_HOST_CPU= ++ GNUSTEP_HOST_VENDOR=alt ++ GNUSTEP_HOST_OS=linux-gnu ++ '[' -z '' ']' +++ pwd ++ tmpdir=/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ cd /tmp +++ /usr/share/GNUstep/Makefiles/config.guess ++ GNUSTEP_HOST=i686-pc-linux-gnu +++ /usr/share/GNUstep/Makefiles/config.sub i686-pc-linux-gnu ++ GNUSTEP_HOST=i686-pc-linux-gnu ++ cd /usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ unset tmpdir ++ '[' -z '' ']' +++ /usr/share/GNUstep/Makefiles/cpu.sh i686-pc-linux-gnu ++ GNUSTEP_HOST_CPU=i686 +++ /usr/share/GNUstep/Makefiles/clean_cpu.sh i686 ++ GNUSTEP_HOST_CPU=ix86 ++ '[' -z alt ']' ++ '[' -z linux-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_HOST GNUSTEP_HOST_CPU GNUSTEP_HOST_VENDOR GNUSTEP_HOST_OS ++ . /usr/share/GNUstep/Makefiles/filesystem.sh +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z GNUstep/Applications ']' +++ '[' -z GNUstep/Applications/Admin ']' +++ '[' -z GNUstep/WebApplications ']' +++ '[' -z GNUstep/Tools ']' +++ '[' -z GNUstep/Tools/Admin ']' +++ '[' -z GNUstep ']' +++ '[' -z GNUstep/Headers ']' +++ '[' -z GNUstep/Libraries ']' +++ '[' -z GNUstep/Documentation ']' +++ '[' -z GNUstep/Documentation/man ']' +++ '[' -z GNUstep/Documentation/info ']' +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "$GNUSTEP_USER_DIR_APPS" in +++ GNUSTEP_USER_APPS=/usr/src/GNUstep/Applications +++ unset GNUSTEP_USER_DIR_APPS +++ case "$GNUSTEP_USER_DIR_ADMIN_APPS" in +++ GNUSTEP_USER_ADMIN_APPS=/usr/src/GNUstep/Applications/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_APPS +++ case "$GNUSTEP_USER_DIR_WEB_APPS" in +++ GNUSTEP_USER_WEB_APPS=/usr/src/GNUstep/WebApplications +++ unset GNUSTEP_USER_DIR_WEB_APPS +++ case "$GNUSTEP_USER_DIR_TOOLS" in +++ GNUSTEP_USER_TOOLS=/usr/src/GNUstep/Tools +++ unset GNUSTEP_USER_DIR_TOOLS +++ case "$GNUSTEP_USER_DIR_ADMIN_TOOLS" in +++ GNUSTEP_USER_ADMIN_TOOLS=/usr/src/GNUstep/Tools/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_TOOLS +++ case "$GNUSTEP_USER_DIR_LIBRARY" in +++ GNUSTEP_USER_LIBRARY=/usr/src/GNUstep +++ unset GNUSTEP_USER_DIR_LIBRARY +++ case "$GNUSTEP_USER_DIR_HEADERS" in +++ GNUSTEP_USER_HEADERS=/usr/src/GNUstep/Headers +++ unset GNUSTEP_USER_DIR_HEADERS +++ case "$GNUSTEP_USER_DIR_LIBRARIES" in +++ GNUSTEP_USER_LIBRARIES=/usr/src/GNUstep/Libraries +++ unset GNUSTEP_USER_DIR_LIBRARIES +++ case "$GNUSTEP_USER_DIR_DOC" in +++ GNUSTEP_USER_DOC=/usr/src/GNUstep/Documentation +++ unset GNUSTEP_USER_DIR_DOC +++ case "$GNUSTEP_USER_DIR_DOC_MAN" in +++ GNUSTEP_USER_DOC_MAN=/usr/src/GNUstep/Documentation/man +++ unset GNUSTEP_USER_DIR_DOC_MAN +++ case "$GNUSTEP_USER_DIR_DOC_INFO" in +++ GNUSTEP_USER_DOC_INFO=/usr/src/GNUstep/Documentation/info +++ unset GNUSTEP_USER_DIR_DOC_INFO ++ unset GNUSTEP_HOME ++ fixup_paths=no +++ echo /usr/share/GNUstep/Makefiles +++ sed 's|^[a-zA-Z]:/.*$||' ++ path_check=/usr/share/GNUstep/Makefiles ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ unset path_check ++ '[' no = yes ']' ++ '[' -z /usr:/usr/src/GNUstep ']' +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Tools /usr/bin /usr/bin /usr/bin no ++ GNUSTEP_TOOLS_PATHLIST=/usr/bin:/usr/src/GNUstep/Tools ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/src/GNUstep/Tools/Admin -a -w /usr/src/GNUstep/Tools/Admin ']' ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/bin ++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/bin: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/src/GNUstep/Tools ++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/src/GNUstep/Tools: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_TOOLS_PATHLIST ++ export PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Libraries /usr/lib /usr/lib /usr/lib no ++ GNUSTEP_LIBRARIES_PATHLIST=/usr/lib:/usr/src/GNUstep/Libraries ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/lib ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib: ++ grep -v :/usr/lib: ++ export LD_LIBRARY_PATH ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/src/GNUstep/Libraries ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib: ++ grep -v :/usr/src/GNUstep/Libraries: ++ export LD_LIBRARY_PATH ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARIES_PATHLIST ++ case "$GNUSTEP_HOST_OS" in +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep /usr/lib/GNUstep /usr/lib/GNUstep /usr/lib/GNUstep no ++ GNUSTEP_LIBRARY_PATHLIST=/usr/lib/GNUstep:/usr/src/GNUstep ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/lib/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java ']' ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java: ++ grep -v :/usr/lib/GNUstep/Libraries/Java: ++ path_fragment=/usr/lib/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile: ++ grep -v :/usr/lib/GNUstep/Libraries/Guile: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/src/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java ']' ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java: ++ grep -v :/usr/src/GNUstep/Libraries/Java: ++ path_fragment=/usr/src/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile: ++ grep -v :/usr/src/GNUstep/Libraries/Guile: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARY_PATHLIST ++ export CLASSPATH ++ export GUILE_LOAD_PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Documentation/info /usr/share/info /usr/share/info /usr/share/info no ++ GNUSTEP_INFO_PATHLIST=/usr/share/info:/usr/src/GNUstep/Documentation/info ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/share/info: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/src/GNUstep/Documentation/info: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset GNUSTEP_INFO_PATHLIST ++ export INFOPATH ++ '[' -n '' ']' ++ '[' no = yes ']' ++ unset GNUSTEP_MAKE_STRICT_V2_MODE ++ '[' -z '' ']' ++ unset GNUSTEP_CONFIG_FILE ++ unset GNUSTEP_KEEP_CONFIG_FILE ++ '[' -z '' ']' ++ unset GNUSTEP_USER_CONFIG_FILE ++ unset GNUSTEP_KEEP_USER_CONFIG_FILE ++ unset GNUSTEP_USER_DEFAULTS_DIR ++ unset GNUSTEP_SYSTEM_APPS ++ unset GNUSTEP_SYSTEM_ADMIN_APPS ++ unset GNUSTEP_SYSTEM_WEB_APPS ++ unset GNUSTEP_SYSTEM_TOOLS ++ unset GNUSTEP_SYSTEM_ADMIN_TOOLS ++ unset GNUSTEP_SYSTEM_LIBRARY ++ unset GNUSTEP_SYSTEM_HEADERS ++ unset GNUSTEP_SYSTEM_LIBRARIES ++ unset GNUSTEP_SYSTEM_DOC ++ unset GNUSTEP_SYSTEM_DOC_MAN ++ unset GNUSTEP_SYSTEM_DOC_INFO ++ unset GNUSTEP_NETWORK_APPS ++ unset GNUSTEP_NETWORK_ADMIN_APPS ++ unset GNUSTEP_NETWORK_WEB_APPS ++ unset GNUSTEP_NETWORK_TOOLS ++ unset GNUSTEP_NETWORK_ADMIN_TOOLS ++ unset GNUSTEP_NETWORK_LIBRARY ++ unset GNUSTEP_NETWORK_HEADERS ++ unset GNUSTEP_NETWORK_LIBRARIES ++ unset GNUSTEP_NETWORK_DOC ++ unset GNUSTEP_NETWORK_DOC_MAN ++ unset GNUSTEP_NETWORK_DOC_INFO ++ unset GNUSTEP_LOCAL_APPS ++ unset GNUSTEP_LOCAL_ADMIN_APPS ++ unset GNUSTEP_LOCAL_WEB_APPS ++ unset GNUSTEP_LOCAL_TOOLS ++ unset GNUSTEP_LOCAL_ADMIN_TOOLS ++ unset GNUSTEP_LOCAL_LIBRARY ++ unset GNUSTEP_LOCAL_HEADERS ++ unset GNUSTEP_LOCAL_LIBRARIES ++ unset GNUSTEP_LOCAL_DOC ++ unset GNUSTEP_LOCAL_DOC_MAN ++ unset GNUSTEP_LOCAL_DOC_INFO ++ unset GNUSTEP_USER_APPS ++ unset GNUSTEP_USER_ADMIN_APPS ++ unset GNUSTEP_USER_WEB_APPS ++ unset GNUSTEP_USER_TOOLS ++ unset GNUSTEP_USER_ADMIN_TOOLS ++ unset GNUSTEP_USER_LIBRARY ++ unset GNUSTEP_USER_HEADERS ++ unset GNUSTEP_USER_LIBRARIES ++ unset GNUSTEP_USER_DOC ++ unset GNUSTEP_USER_DOC_MAN ++ unset GNUSTEP_USER_DOC_INFO ++ unset GNUSTEP_SYSTEM_USERS_DIR ++ unset GNUSTEP_LOCAL_USERS_DIR ++ unset GNUSTEP_NETWORK_USERS_DIR ++ '[' -n '' ']' + make 'INSTALL=/bin/install -p' install DESTDIR=/usr/src/tmp/gnustep-BioCocoa-buildroot GNUSTEP_INSTALLATION_DOMAIN=SYSTEM make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' This is gnustep-make 2.6.6. Type 'gmake print-gnustep-make-help' for help. make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' Making build-headers in subprojects of framework BioCocoa... Making build-headers in subprojects of subproject BCFoundation... Making build-headers for subproject BCAlignment... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCAnalysis... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCGeneExpression... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCGeneticCode... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCProteinStructure... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCSequence... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCSequenceIO... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCSymbol... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCTools... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCUtils... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCFoundation... gmake[2]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for framework BioCocoa... Making all in subprojects of framework BioCocoa... Making all in subprojects of subproject BCFoundation... Making all for subproject BCAlignment... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCAnalysis... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCGeneExpression... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCGeneticCode... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCProteinStructure... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCSequence... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCSequenceIO... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCSymbol... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCTools... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCUtils... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCFoundation... gmake[3]: Nothing to be done for 'internal-subproject-compile'. Making all for framework BioCocoa... gmake[2]: Nothing to be done for 'internal-framework-compile'. Copying resources into the framework wrapper... Copying resources from subprojects into the framework wrapper... Making install in subprojects of framework BioCocoa... Making install in subprojects of subproject BCFoundation... Making install for subproject BCAlignment... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCAnalysis... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCGeneExpression... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCGeneticCode... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCProteinStructure... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCSequence... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCSequenceIO... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCSymbol... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCTools... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCUtils... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCFoundation... gmake[2]: Nothing to be done for 'internal-subproject-install'. Making install for framework BioCocoa... Creating /usr/src/tmp/gnustep-BioCocoa-buildroot//usr/lib/GNUstep/Frameworks... Creating /usr/src/tmp/gnustep-BioCocoa-buildroot//usr/include... Installing framework BioCocoa... Installing headers... make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' + pushd /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib ~/tmp/gnustep-BioCocoa-buildroot/usr/lib ~/RPM/BUILD/gnustep-BioCocoa-2.2.2 + for j in BioCocoa + for i in lib$j.so* + rm -f libBioCocoa.so + mv GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so ./ + for k in lib$j.so.*.* + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so + rm GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + for i in lib$j.so* + rm -f libBioCocoa.so.2 + mv GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2 ./ + for k in lib$j.so.*.* + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2 + rm GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + for i in lib$j.so* + rm -f libBioCocoa.so.2.2.2 + mv GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2.2.2 ./ + for k in lib$j.so.*.* + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2.2.2 + rm GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + popd ~/RPM/BUILD/gnustep-BioCocoa-2.2.2 + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/gnustep-BioCocoa-buildroot (auto) mode of './usr/lib/libBioCocoa.so.2.2.2' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) Verifying and fixing files in /usr/src/tmp/gnustep-BioCocoa-buildroot (binconfig,pkgconfig,libtool,desktop) Checking contents of files in /usr/src/tmp/gnustep-BioCocoa-buildroot/ (default) Compressing files in /usr/src/tmp/gnustep-BioCocoa-buildroot (auto) Adjusting library links in /usr/src/tmp/gnustep-BioCocoa-buildroot ./usr/lib: libBioCocoa.so.2 -> libBioCocoa.so.2.2.2 Verifying ELF objects in /usr/src/tmp/gnustep-BioCocoa-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=strict) verify-elf: WARNING: ./usr/lib/libBioCocoa.so.2.2.2: uses non-LFS functions: fgetpos fopen fseeko fsetpos ftello Hardlinking identical .pyc and .pyo files Processing files: gnustep-BioCocoa-2.2.2-alt3 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.73560 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd gnustep-BioCocoa-2.2.2 + DOCDIR=/usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + export DOCDIR + rm -rf /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + /bin/mkdir -p /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + cp -prL ChangeLog Authors.txt Publications.txt Readme.txt license.txt /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + chmod -R go-w /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + chmod -R a+rX /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.VFH8jR find-provides: broken symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/BioCocoa -> ./Versions/Current/BioCocoa is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/BioCocoa -> /usr/lib/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so -> /usr/lib/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2 -> /usr/lib/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2 -> /usr/lib/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: broken symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/libBioCocoa.so -> ./Versions/Current/libBioCocoa.so is not going to provide anything find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Rw7jzP find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) Requires: libgnustep-BioCocoa = 2.2.2-alt3, gnustep-back, /usr/lib/libBioCocoa.so.2.2.2 Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.vWvHIO Processing files: libgnustep-BioCocoa-2.2.2-alt3 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.u3wT3O find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) lib.prov: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/libBioCocoa.so.2: 86 symbols, 17 bpp Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.PpmwdR find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) Provides: libBioCocoa.so.2 = set:kdZiyFAWQFi5YFzHqxdrZHOIBCofiteGdzRQZvrTfe6RZgbDcNmhYw2Z0GjkR7iSUZk4euTMZwfJsGTdjN0l296oruBRgYDGt77V8WPkBT8uLFvQp4PTnoGlTrZmikhNdqLPsrqaDA9AkZbOY9dZ0hKmv35mTnslZ9R3yKhRG2bNZa6M22 Requires: libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.2), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libgnustep-base.so.1.24 >= set:oj2p34SjSbHAMwqPopICD53lKzH8gTFWKApioF4rkAn2cgFixCRBGn3lweTTGVMvOSSoHIZjmhEm1Kgv0Uxyl1TschbKp, libobjc2.so.4 >= set:mjyhn17r8TfASjqM4, rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.YpZ75O Creating libgnustep-BioCocoa-debuginfo package Processing files: libgnustep-BioCocoa-devel-2.2.2-alt3 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.aQYKoP find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.qPZJEO find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h:107:9: fatal error: BioCocoa/BCGeneExpressionOmnibus.h: No such file or directory 107 | #import | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h: cpp failed, trying c++ mode i586-alt-linux-cpp: fatal error: cannot execute 'cc1plus': execvp: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h: cpp failed /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h:33:9: fatal error: BCAlignment.h: No such file or directory 33 | #import "BCAlignment.h" | ^~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h: cpp failed /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h:36:9: fatal error: BCInternal.h: No such file or directory 36 | #import "BCInternal.h" | ^~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h: cpp failed Provides: gnustep-BioCocoa-devel = 2.2.2-alt3 Requires: gnustep-BioCocoa = 2.2.2-alt3, libgnustep-BioCocoa = 2.2.2-alt3, /usr/lib/libBioCocoa.so.2, gnustep-base-devel Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.AcIMrN Processing files: libgnustep-BioCocoa-debuginfo-2.2.2-alt3 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.2Nz6zR find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.wEhiKO find-requires: running scripts (debuginfo) Provides: debug(libBioCocoa.so.2) Requires: libgnustep-BioCocoa = 2.2.2-alt3, debug(libc.so.6), debug(libgnustep-base.so.1.24), debug(libobjc2.so.4) Removing 1 extra deps from gnustep-BioCocoa due to dependency on libgnustep-BioCocoa Removing 1 extra deps from libgnustep-BioCocoa-devel due to dependency on libgnustep-BioCocoa Removing 1 extra deps from libgnustep-BioCocoa-devel due to repentancy on gnustep-BioCocoa Wrote: /usr/src/RPM/RPMS/i586/gnustep-BioCocoa-2.2.2-alt3.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/libgnustep-BioCocoa-2.2.2-alt3.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/libgnustep-BioCocoa-devel-2.2.2-alt3.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/libgnustep-BioCocoa-debuginfo-2.2.2-alt3.i586.rpm 29.29user 6.36system 1:07.46elapsed 52%CPU (0avgtext+0avgdata 45580maxresident)k 0inputs+0outputs (0major+2164706minor)pagefaults 0swaps 49.08user 10.11system 1:41.29elapsed 58%CPU (0avgtext+0avgdata 109756maxresident)k 42784inputs+0outputs (0major+2658597minor)pagefaults 0swaps --- libgnustep-BioCocoa-2.2.2-alt3.i586.rpm.repo 2014-02-14 00:43:46.000000000 +0000 +++ libgnustep-BioCocoa-2.2.2-alt3.i586.rpm.hasher 2019-12-12 11:24:45.972057811 +0000 @@ -7,9 +7,10 @@ Requires: libc.so.6(GLIBC_2.3) -Requires: libgnustep-base.so.1.24 >= set:qluHxuuPoZfxdDPjB2QIKgkWLAJdiVh1t16M5IG2shQZuFMuyizRJ3aI4rkhuxAVtlwed9yNSZw8B1pzQS5IMQYB8ihvNmTQbD5Tc0 +Requires: libc.so.6(GLIBC_2.3.4) +Requires: libc.so.6(GLIBC_2.4) +Requires: libgnustep-base.so.1.24 >= set:oj2p34SjSbHAMwqPopICD53lKzH8gTFWKApioF4rkAn2cgFixCRBGn3lweTTGVMvOSSoHIZjmhEm1Kgv0Uxyl1TschbKp Requires: rpmlib(SetVersions) -Requires: libobjc2.so.4 >= set:mjGI24FIybqZDZs5UZG23 -Requires: libpthread.so.0 +Requires: libobjc2.so.4 >= set:mjyhn17r8TfASjqM4 Requires: rtld(GNU_HASH) Requires: rpmlib(PayloadIsLzma) -Provides: libBioCocoa.so.2 = set: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 +Provides: libBioCocoa.so.2 = set:kdZiyFAWQFi5YFzHqxdrZHOIBCofiteGdzRQZvrTfe6RZgbDcNmhYw2Z0GjkR7iSUZk4euTMZwfJsGTdjN0l296oruBRgYDGt77V8WPkBT8uLFvQp4PTnoGlTrZmikhNdqLPsrqaDA9AkZbOY9dZ0hKmv35mTnslZ9R3yKhRG2bNZa6M22 Provides: libgnustep-BioCocoa = 2.2.2-alt3 --- libgnustep-BioCocoa-debuginfo-2.2.2-alt3.i586.rpm.repo 2014-02-14 00:43:46.000000000 +0000 +++ libgnustep-BioCocoa-debuginfo-2.2.2-alt3.i586.rpm.hasher 2019-12-12 11:24:46.003057891 +0000 @@ -32,6 +32,4 @@ /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCCodonRNA.m 100644 -/usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCGeneticCode.h 100644 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCGeneticCode.m 100644 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCInternal.h 100644 -/usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCPreferences.h 100644 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCPreferences.m 100644 @@ -68,2 +66,3 @@ /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO/BCSequenceWriter.m 100644 +/usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCStringDefinitions.h 100644 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCStringDefinitions.m 100644 @@ -112,3 +111,2 @@ Requires: debug(libobjc2.so.4) -Requires: debug(libpthread.so.0) Requires: rpmlib(PayloadIsLzma)