<86>Jun 28 11:34:28 userdel[80901]: delete user 'rooter' <86>Jun 28 11:34:28 userdel[80901]: removed group 'rooter' owned by 'rooter' <86>Jun 28 11:34:28 userdel[80901]: removed shadow group 'rooter' owned by 'rooter' <86>Jun 28 11:34:28 groupadd[81046]: group added to /etc/group: name=rooter, GID=639 <86>Jun 28 11:34:28 groupadd[81046]: group added to /etc/gshadow: name=rooter <86>Jun 28 11:34:28 groupadd[81046]: new group: name=rooter, GID=639 <86>Jun 28 11:34:28 useradd[81062]: new user: name=rooter, UID=639, GID=639, home=/root, shell=/bin/bash <86>Jun 28 11:34:28 userdel[81083]: delete user 'builder' <86>Jun 28 11:34:28 userdel[81083]: removed group 'builder' owned by 'builder' <86>Jun 28 11:34:28 userdel[81083]: removed shadow group 'builder' owned by 'builder' <86>Jun 28 11:34:29 groupadd[81215]: group added to /etc/group: name=builder, GID=640 <86>Jun 28 11:34:29 groupadd[81215]: group added to /etc/gshadow: name=builder <86>Jun 28 11:34:29 groupadd[81215]: new group: name=builder, GID=640 <86>Jun 28 11:34:29 useradd[81228]: new user: name=builder, UID=640, GID=640, home=/usr/src, shell=/bin/bash <13>Jun 28 11:34:34 rpmi: libjpeg-2:2.0.2-alt1 sisyphus+226996.100.1.1 1554902907 installed <13>Jun 28 11:34:34 rpmi: libexpat-2.2.4-alt1 1503305345 installed <13>Jun 28 11:34:34 rpmi: libpng16-1.6.36-alt1 sisyphus+219478.100.1.1 1547633314 installed <13>Jun 28 11:34:34 rpmi: perl-HTTP-Date-6.02-alt1 1348645274 installed <13>Jun 28 11:34:34 rpmi: libwebp7-1.0.2-alt1 sisyphus+219651.100.1.2 1548057725 installed <13>Jun 28 11:34:34 rpmi: libogg-1.3.3-alt1 sisyphus+221902.4000.4.1 1550598661 installed <13>Jun 28 11:34:36 rpmi: libicu64-1:6.4.2-alt1 sisyphus+227580.100.1.2 1555784329 installed <13>Jun 28 11:34:36 rpmi: libgnustep-objc2-1.7.0-alt14.svn20140704 sisyphus+221065.100.4.2 1549734427 installed <13>Jun 28 11:34:36 rpmi: libcom_err-1.44.6-alt1 sisyphus+224154.100.1.1 1552091678 installed <13>Jun 28 11:34:36 rpmi: libgdbm-1.8.3-alt10 1454943334 installed <13>Jun 28 11:34:36 rpmi: libjasper-2.0.16-alt1 sisyphus+231386.100.1.1 1559568070 installed <13>Jun 28 11:34:36 rpmi: libltdl7-2.4.6-alt1 sisyphus+226971.100.2.1 1554906368 installed <13>Jun 28 11:34:36 rpmi: libopenjpeg2.0-2.3.1-alt1 sisyphus+226454.100.1.1 1554284337 installed <13>Jun 28 11:34:36 rpmi: libjbig-2.1-alt1 1401380926 installed <13>Jun 28 11:34:36 rpmi: libtiff5-4.0.10.0.93.91480d3d-alt1 sisyphus+231496.100.1.1 1559668979 installed <13>Jun 28 11:34:36 rpmi: libICE-1.0.9-alt1 1409902721 installed <13>Jun 28 11:34:36 rpmi: libglvnd-7:1.1.1-alt1 sisyphus+224993.100.4.1 1552634542 installed <13>Jun 28 11:34:36 rpmi: libwayland-server-1.17.0-alt1 sisyphus+225894.100.1.1 1553872805 installed <13>Jun 28 11:34:36 rpmi: ilmbase12-common-2.2.0-alt1.1 1434452921 installed <13>Jun 28 11:34:36 rpmi: libiex12-2.2.0-alt1.1 1434452921 installed <13>Jun 28 11:34:36 rpmi: libnettle6-3.4.1-alt1 sisyphus+226533.100.2.1 1554512222 installed <13>Jun 28 11:34:36 rpmi: libgpg-error-1.36-alt1 sisyphus+225621.300.1.1 1553521082 installed <13>Jun 28 11:34:36 rpmi: libgcrypt20-1.8.4-alt3 sisyphus+232944.100.1.1 1561281975 installed <13>Jun 28 11:34:36 rpmi: libxslt-1.1.33-alt1 sisyphus+226936.100.1.1 1554820937 installed <13>Jun 28 11:34:36 rpmi: perl-LWP-MediaTypes-6.04-alt1 sisyphus+225468.100.1.1 1553186684 installed <13>Jun 28 11:34:36 rpmi: perl-Compress-Raw-Zlib-2.086-alt1 sisyphus+226395.100.1.2 1554269783 installed <13>Jun 28 11:34:36 rpmi: perl-libnet-1:3.11-alt1 1511423541 installed <13>Jun 28 11:34:36 rpmi: libalsa-1:1.1.9-alt2 sisyphus+229323.100.1.1 1557826759 installed <13>Jun 28 11:34:36 rpmi: libp11-kit-0.23.15-alt1 sisyphus+226408.100.2.1 1554288204 installed <13>Jun 28 11:34:36 rpmi: libtasn1-4.13-alt2 1521133850 installed <13>Jun 28 11:34:36 rpmi: libaspell-0.60.6.1-alt3 1534002619 installed <13>Jun 28 11:34:36 rpmi: aspell-0.60.6.1-alt3 1534002619 installed <13>Jun 28 11:34:40 rpmi: flite-2.1-alt1 sisyphus+222718.100.1.1 1551026084 installed <13>Jun 28 11:34:40 rpmi: libao-1:1.2.2-alt3 1512129138 installed <13>Jun 28 11:34:40 rpmi: libgpg-error-devel-1.36-alt1 sisyphus+225621.300.1.1 1553521082 installed <13>Jun 28 11:34:40 rpmi: libhogweed4-3.4.1-alt1 sisyphus+226533.100.2.1 1554512222 installed <13>Jun 28 11:34:40 rpmi: libilmthread12-2.2.0-alt1.1 1434452921 installed <13>Jun 28 11:34:40 rpmi: libhalf12-2.2.0-alt1.1 1434452921 installed <13>Jun 28 11:34:40 rpmi: libSM-1.2.3-alt1 sisyphus+226734.100.2.1 1554586158 installed <13>Jun 28 11:34:40 rpmi: libicns-0.7.1-alt1.2 sisyphus+223351.100.1.1 1551468904 installed <13>Jun 28 11:34:40 rpmi: libgdbm-devel-1.8.3-alt10 1454943334 installed <13>Jun 28 11:34:40 rpmi: libe2fs-1.44.6-alt1 sisyphus+224154.100.1.1 1552091678 installed <13>Jun 28 11:34:40 rpmi: libss-1.44.6-alt1 sisyphus+224154.100.1.1 1552091678 installed <13>Jun 28 11:34:40 rpmi: e2fsprogs-1.44.6-alt1 sisyphus+224154.100.1.1 1552091678 installed <13>Jun 28 11:34:40 rpmi: libgnustep-objc2-devel-1.7.0-alt14.svn20140704 sisyphus+221065.100.4.2 1549734427 installed <13>Jun 28 11:34:40 rpmi: icu-utils-1:6.4.2-alt1 sisyphus+227580.100.1.2 1555784329 installed <13>Jun 28 11:34:40 rpmi: libflac8-1.3.2-alt2 sisyphus+220898.4400.11.1 1551973321 installed <13>Jun 28 11:34:40 rpmi: libvorbis-1.3.6-alt2 sisyphus+220072.200.2.2 1548744475 installed <13>Jun 28 11:34:41 rpmi: perl-File-Listing-6.04-alt1 1329758996 installed <13>Jun 28 11:34:41 rpmi: libxml2-devel-1:2.9.9.0.52.f824-alt1 sisyphus+229881.200.3.1 1558978749 installed <13>Jun 28 11:34:41 rpmi: libgif-4.1.6-alt3 1299634261 installed <13>Jun 28 11:34:41 rpmi: libwmflite-0.2.8.4-alt13 1506519339 installed <13>Jun 28 11:34:41 rpmi: liblqr-0.4.2-alt1 1383038438 installed <13>Jun 28 11:34:41 rpmi: liblcms2-2.9-alt1 1516411892 installed <13>Jun 28 11:34:41 rpmi: libgomp1-8.3.1-alt3 sisyphus+228100.100.1.1 1556142437 installed <13>Jun 28 11:34:41 rpmi: libgts-0.7.6-alt2.drc20130205.1 sisyphus+225727.500.8.1 1553672623 installed <13>Jun 28 11:34:41 rpmi: libpaper-1.1.26-alt1 sisyphus+221360.100.1.1 1549974197 installed <13>Jun 28 11:34:41 rpmi: icon-theme-hicolor-0.17-alt1 1505715846 installed <13>Jun 28 11:34:41 rpmi: shared-mime-info-1.12-alt1 sisyphus+219597.100.2.2 1548057005 installed <13>Jun 28 11:34:42 rpmi: gsettings-desktop-schemas-data-3.32.0-alt1 sisyphus+225059.300.3.2 1552843929 installed <13>Jun 28 11:34:42 rpmi: libgio-2.60.4-alt1 sisyphus+231865.100.1.1 1560193524 installed <13>Jun 28 11:34:42 rpmi: gsettings-desktop-schemas-3.32.0-alt1 sisyphus+225059.300.3.2 1552843980 installed <13>Jun 28 11:34:42 rpmi: libgdk-pixbuf-locales-2.38.1-alt1.1 sisyphus+226643.100.1.1 1554470431 installed <13>Jun 28 11:34:42 rpmi: libgdk-pixbuf-2.38.1-alt1.1 sisyphus+226643.100.1.1 1554470472 installed <13>Jun 28 11:34:42 rpmi: gtk-update-icon-cache-3.24.9-alt1 sisyphus+232549.100.1.1 1560882834 installed <13>Jun 28 11:34:44 rpmi: libgtk+2-locales-2.24.32-alt3 sisyphus+227306.100.1.3 1555646039 installed <13>Jun 28 11:34:44 rpmi: libatk-locales-2.32.0-alt1 sisyphus+225059.600.3.2 1552845198 installed <13>Jun 28 11:34:44 rpmi: libatk-2.32.0-alt1 sisyphus+225059.600.3.2 1552845362 installed <13>Jun 28 11:34:44 rpmi: libdatrie-0.2.9-alt1_6 1511686676 installed <13>Jun 28 11:34:44 rpmi: libthai-0.1.28-alt1_1 sisyphus+226107.100.1.1 1554123079 installed <13>Jun 28 11:34:44 rpmi: libfribidi-1.0.5-alt1 1532424345 installed <13>Jun 28 11:34:44 rpmi: libpixman-3:0.38.4-alt1 sisyphus+228006.100.1.1 1556013870 installed <13>Jun 28 11:34:44 rpmi: libxshmfence-1.3-alt1 sisyphus+223149.1000.2.1 1551268571 installed <13>Jun 28 11:34:44 rpmi: libwayland-client-1.17.0-alt1 sisyphus+225894.100.1.1 1553872805 installed <13>Jun 28 11:34:44 rpmi: libpciaccess-1:0.14-alt1 1528969252 installed <13>Jun 28 11:34:44 rpmi: libdrm-1:2.4.98-alt1 sisyphus+228121.100.4.1 1556184495 installed <13>Jun 28 11:34:44 rpmi: libgbm-4:19.1.1-alt1 sisyphus+233224.100.1.1 1561540482 installed <13>Jun 28 11:34:44 rpmi: libgraphite2-1.3.13-alt2 sisyphus+226799.100.1.1 1554648241 installed <13>Jun 28 11:34:44 rpmi: libharfbuzz-2.5.3-alt1 sisyphus+233337.100.1.1 1561643308 installed <13>Jun 28 11:34:45 rpmi: libfreetype-2.10.0-alt2 sisyphus+226881.100.2.1 1555676286 installed <13>Jun 28 11:34:45 rpmi: fontconfig-2.13.1-alt1 sisyphus+226691.100.2.2 1554598726 installed Updating fonts cache: <29>Jun 28 11:34:46 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Jun 28 11:34:46 rpmi: libX11-locales-3:1.6.8-alt1 sisyphus+232786.200.1.1 1561106874 installed <13>Jun 28 11:34:46 rpmi: libXdmcp-1.1.3-alt1 sisyphus+225206.600.1.2 1552949353 installed <13>Jun 28 11:34:46 rpmi: libXau-1.0.9-alt1 sisyphus+223149.200.2.1 1551268152 installed <13>Jun 28 11:34:46 rpmi: libxcb-1.13.1-alt1 sisyphus+226527.100.2.2 1554593801 installed <13>Jun 28 11:34:46 rpmi: libX11-3:1.6.8-alt1 sisyphus+232786.200.1.1 1561106876 installed <13>Jun 28 11:34:46 rpmi: libXext-1.3.4-alt1 sisyphus+225206.700.1.2 1552949429 installed <13>Jun 28 11:34:46 rpmi: libXrender-0.9.8-alt1 1371312112 installed <13>Jun 28 11:34:46 rpmi: libXfixes-5.0.3-alt1 sisyphus+226736.100.2.2 1554614841 installed <13>Jun 28 11:34:46 rpmi: libXdamage-1.1.5-alt1 sisyphus+225206.500.1.2 1552949286 installed <13>Jun 28 11:34:46 rpmi: libXcursor-1.2.0-alt1 sisyphus+225206.400.1.2 1552949218 installed <13>Jun 28 11:34:46 rpmi: libXft-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987708 installed <13>Jun 28 11:34:46 rpmi: libXrandr-1.5.2-alt1 sisyphus+225206.1300.1.2 1552949710 installed <13>Jun 28 11:34:46 rpmi: libXxf86vm-1.1.4-alt2 1527672187 installed <13>Jun 28 11:34:46 rpmi: libGLX-mesa-4:19.1.1-alt1 sisyphus+233224.100.1.1 1561540482 installed <13>Jun 28 11:34:46 rpmi: libEGL-mesa-4:19.1.1-alt1 sisyphus+233224.100.1.1 1561540482 installed <13>Jun 28 11:34:46 rpmi: libEGL-7:1.1.1-alt1 sisyphus+224993.100.4.1 1552634542 installed <13>Jun 28 11:34:46 rpmi: libGLX-7:1.1.1-alt1 sisyphus+224993.100.4.1 1552634542 installed <13>Jun 28 11:34:46 rpmi: libGL-7:1.1.1-alt1 sisyphus+224993.100.4.1 1552634542 installed <13>Jun 28 11:34:46 rpmi: libcairo-1:1.16.0-alt1 sisyphus+226534.100.2.3 1554515535 installed <13>Jun 28 11:34:46 rpmi: libpango-1.42.4-alt1 1534787259 installed <13>Jun 28 11:34:46 rpmi: liblasi-1.1.2-alt1.qa1 1460141148 installed <13>Jun 28 11:34:47 rpmi: librsvg-1:2.44.14-alt1 sisyphus+229312.100.1.1 1557813760 installed <13>Jun 28 11:34:47 rpmi: libXi-1.7.10-alt1 sisyphus+232786.300.1.1 1561106978 installed <13>Jun 28 11:34:47 rpmi: libXinerama-1.1.4-alt1 sisyphus+223149.300.2.1 1551268216 installed <13>Jun 28 11:34:47 rpmi: libXt-1.1.4-alt1 1369984722 installed <13>Jun 28 11:34:47 rpmi: libXpm-3.5.12-alt1 sisyphus+223149.400.2.1 1551268289 installed <13>Jun 28 11:34:47 rpmi: libgd3-2.2.5-alt3 sisyphus+226800.200.2.1 1554649317 installed <13>Jun 28 11:34:47 rpmi: libXcomposite-0.4.5-alt1 sisyphus+225206.300.1.2 1552949137 installed <13>Jun 28 11:34:47 rpmi: openexr22-common-2.2.0-alt3 sisyphus+221267.100.1.2 1549944972 installed <13>Jun 28 11:34:47 rpmi: libilmimf22-2.2.0-alt3 sisyphus+221267.100.1.2 1549944972 installed <13>Jun 28 11:34:47 rpmi: libgsm-1.0.17-alt1 1523356165 installed <13>Jun 28 11:34:47 rpmi: libsndfile-1.0.28-alt2 sisyphus.212728.100 1536333068 installed <13>Jun 28 11:34:47 rpmi: liblz4-1:1.9.1-alt1 sisyphus+228057.100.1.1 1556059318 installed <13>Jun 28 11:34:47 rpmi: libsystemd-1:242-alt8 sisyphus+229848.240.4.1 1559129099 installed <13>Jun 28 11:34:47 rpmi: libdbus-1.12.12-alt2 sisyphus+221234.100.1.2 1549918047 installed <13>Jun 28 11:34:47 rpmi: libavahi-0.6.32-alt1 1500485702 installed <13>Jun 28 11:34:47 rpmi: libcups-2.2.11-alt1 sisyphus+225793.100.1.1 1553701176 installed <13>Jun 28 11:34:47 rpmi: libgtk+2-2.24.32-alt3 sisyphus+227306.100.1.3 1555646092 installed <13>Jun 28 11:34:50 rpmi: libgs-9.27-alt1 sisyphus+230060.100.1.1 1558779717 installed <13>Jun 28 11:34:50 rpmi: libgraphviz-2.40.1-alt6 sisyphus+227247.100.2.2 1555749625 installed <13>Jun 28 11:34:50 rpmi: libidn2-2.2.0-alt1 sisyphus+229970.100.1.1 1558625600 installed <13>Jun 28 11:34:50 rpmi: libgnutls30-3.6.8-alt1 sisyphus+231079.100.1.1 1559063982 installed <13>Jun 28 11:34:50 rpmi: libgnustep-base-1:1.24.6-alt8.svn20140226 sisyphus+226762.1100.12.1 1555027832 installed <13>Jun 28 11:34:50 rpmi: perl-Try-Tiny-0.30-alt1 1514318058 installed <13>Jun 28 11:34:50 rpmi: perl-IO-Socket-IP-0.39-alt1 1494508514 installed <13>Jun 28 11:34:50 rpmi: perl-Compress-Raw-Bzip2-2.086-alt1 sisyphus+226394.100.1.2 1554269409 installed <13>Jun 28 11:34:50 rpmi: perl-HTML-Tagset-3.20-alt2 1317725093 installed <13>Jun 28 11:34:50 rpmi: perl-Filter-1.59-alt1.1 sisyphus+219907.400.1.1 1548343389 installed <13>Jun 28 11:34:50 rpmi: perl-Encode-3.01-alt1 sisyphus+224923.100.1.1 1552474122 installed <13>Jun 28 11:34:50 rpmi: perl-URI-1.76-alt1 sisyphus+220243.100.1.1 1548863244 installed <13>Jun 28 11:34:50 rpmi: perl-IO-Compress-2.086-alt1 sisyphus+226399.100.2.1 1554270186 installed <13>Jun 28 11:34:50 rpmi: perl-Net-HTTP-6.19-alt1 sisyphus+229756.100.1.1 1558454558 installed <13>Jun 28 11:34:50 rpmi: perl-HTML-Parser-3.72-alt1.2 sisyphus+219907.600.1.1 1548343581 installed <13>Jun 28 11:34:50 rpmi: perl-WWW-RobotRules-6.02-alt1 1329756211 installed <13>Jun 28 11:34:50 rpmi: perl-Encode-Locale-1.05-alt1 1444608613 installed <13>Jun 28 11:34:50 rpmi: perl-IO-HTML-1.001-alt1 1404821752 installed <13>Jun 28 11:34:50 rpmi: perl-HTTP-Message-6.18-alt1 1528288416 installed <13>Jun 28 11:34:50 rpmi: perl-HTTP-Cookies-6.04-alt1 1504116575 installed <13>Jun 28 11:34:50 rpmi: perl-HTTP-Negotiate-6.01-alt1 1329760563 installed <13>Jun 28 11:34:50 rpmi: perl-XML-Writer-0.625-alt1 1402417374 installed <13>Jun 28 11:34:50 rpmi: perl-Term-ANSIColor-4.06-alt1 1479407083 installed <13>Jun 28 11:34:50 rpmi: perl-Data-Dump-1.23-alt1 1444601978 installed <13>Jun 28 11:34:50 rpmi: perl-libwww-6.39-alt1 sisyphus+229237.100.1.1 1557650051 installed <13>Jun 28 11:34:50 rpmi: perl-XML-Parser-2.44-alt2.2 sisyphus+219907.1300.1.1 1548343835 installed <13>Jun 28 11:34:50 rpmi: libdb4.7-devel-4.7.25-alt9 1490438479 installed <13>Jun 28 11:34:51 rpmi: perl-devel-1:5.28.2-alt1 sisyphus+230063.100.1.1 1558785441 installed <13>Jun 28 11:34:51 rpmi: hwinfo-utils-21.23-alt1.1 sisyphus+223919.100.1.1 1551893139 installed <13>Jun 28 11:34:51 rpmi: gnustep-dirs-1.0-alt2 1355065931 installed <13>Jun 28 11:34:51 rpmi: gdb-common-8.2.50.20180917-alt4 sisyphus+233343.100.2.2 1561655505 installed <13>Jun 28 11:34:51 rpmi: libobjc4-8.3.1-alt3 sisyphus+228100.100.1.1 1556142437 installed <13>Jun 28 11:34:51 rpmi: libobjc8-devel-8.3.1-alt3 sisyphus+228100.100.1.1 1556142437 installed <13>Jun 28 11:34:52 rpmi: gcc8-objc-8.3.1-alt3 sisyphus+228100.100.1.1 1556142437 installed <13>Jun 28 11:34:52 rpmi: gcc-objc-8-alt1 sisyphus+222164.100.1.1 1550685957 installed <13>Jun 28 11:34:52 rpmi: djvu-common-3.5.25.3-alt1 1365826139 installed <13>Jun 28 11:34:52 rpmi: libdjvu-3.5.25.3-alt1 1365826139 installed <13>Jun 28 11:34:52 rpmi: libImageMagick6.6-6.9.10.49-alt2 sisyphus+232900.100.1.1 1561246596 installed <13>Jun 28 11:34:52 rpmi: libgnustep-gui-0.24.0-alt8.svn20140223 sisyphus+227106.100.1.1 1555149570 installed <13>Jun 28 11:34:52 rpmi: gnustep-gui-0.24.0-alt8.svn20140223 sisyphus+227106.100.1.1 1555149570 installed <13>Jun 28 11:34:53 rpmi: llvm7.0-libs-7.0.1-alt4.rel sisyphus+229878.100.2.1 1558604700 installed <13>Jun 28 11:34:54 rpmi: clang7.0-libs-7.0.1-alt4.rel sisyphus+229878.100.2.1 1558604700 installed <13>Jun 28 11:34:54 rpmi: libverto-0.3.0-alt1_7 sisyphus+225932.100.1.1 1553994919 installed <13>Jun 28 11:34:54 rpmi: libkeyutils-1.6-alt2 sisyphus+226520.100.2.1 1554512089 installed <13>Jun 28 11:34:54 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Jun 28 11:34:54 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Jun 28 11:34:54 rpmi: ca-certificates-2019.03.31-alt1 sisyphus+226302.100.1.1 1554055265 installed <13>Jun 28 11:34:54 rpmi: ca-trust-0.1.2-alt1 sisyphus+233348.100.1.1 1561653823 installed <13>Jun 28 11:34:54 rpmi: p11-kit-trust-0.23.15-alt1 sisyphus+226408.100.2.1 1554288204 installed <13>Jun 28 11:34:54 rpmi: libcrypto1.1-1.1.1b-alt2 sisyphus+227249.100.2.1 1555667822 installed <13>Jun 28 11:34:54 rpmi: libssl1.1-1.1.1b-alt2 sisyphus+227249.100.2.1 1555667822 installed <13>Jun 28 11:34:54 rpmi: python3-3.7.3-alt1 sisyphus+225625.574.90.1 1555274251 installed <13>Jun 28 11:34:54 rpmi: libpython3-3.7.3-alt1 sisyphus+225625.574.90.1 1555274251 installed <13>Jun 28 11:34:55 rpmi: python3-base-3.7.3-alt1 sisyphus+225625.574.90.1 1555274251 installed <13>Jun 28 11:34:55 rpmi: gdb-8.2.50.20180917-alt4 sisyphus+233343.100.2.2 1561655528 installed <13>Jun 28 11:34:55 rpmi: gnustep-make-2.6.6-alt20.svn20140202 sisyphus+221065.400.4.2 1549734566 installed <13>Jun 28 11:34:55 rpmi: gnustep-base-1:1.24.6-alt8.svn20140226 sisyphus+226762.1100.12.1 1555027832 installed <13>Jun 28 11:34:55 rpmi: gnustep-base-devel-1:1.24.6-alt8.svn20140226 sisyphus+226762.1100.12.1 1555027832 installed <86>Jun 28 11:34:55 groupadd[116820]: group added to /etc/group: name=_keytab, GID=499 <86>Jun 28 11:34:55 groupadd[116820]: group added to /etc/gshadow: name=_keytab <86>Jun 28 11:34:55 groupadd[116820]: new group: name=_keytab, GID=499 <13>Jun 28 11:34:55 rpmi: libkrb5-1.16.3-alt1 sisyphus+223678.100.1.1 1551746516 installed <13>Jun 28 11:34:55 rpmi: libtirpc-1.0.3-alt1 1532008017 installed <13>Jun 28 11:34:55 rpmi: libnsl2-1.1.0-alt1_1 1511548749 installed <13>Jun 28 11:34:55 rpmi: python-modules-encodings-2.7.16-alt1 sisyphus+226365.200.2.1 1554143304 installed <13>Jun 28 11:34:55 rpmi: python-modules-compiler-2.7.16-alt1 sisyphus+226365.200.2.1 1554143304 installed <13>Jun 28 11:34:55 rpmi: python-modules-email-2.7.16-alt1 sisyphus+226365.200.2.1 1554143304 installed <13>Jun 28 11:34:55 rpmi: python-modules-unittest-2.7.16-alt1 sisyphus+226365.200.2.1 1554143304 installed <13>Jun 28 11:34:55 rpmi: python-modules-nis-2.7.16-alt1 sisyphus+226365.200.2.1 1554143304 installed <13>Jun 28 11:34:56 rpmi: python-modules-2.7.16-alt1 sisyphus+226365.200.2.1 1554143304 installed <13>Jun 28 11:34:59 rpmi: clang7.0-7.0.1-alt4.rel sisyphus+229878.100.2.1 1558604700 installed <13>Jun 28 11:34:59 rpmi: clang7.0-devel-7.0.1-alt4.rel sisyphus+229878.100.2.1 1558604700 installed <13>Jun 28 11:34:59 rpmi: gnustep-gui-devel-0.24.0-alt8.svn20140223 sisyphus+227106.100.1.1 1555149570 installed <13>Jun 28 11:34:59 rpmi: gnustep-make-devel-2.6.6-alt20.svn20140202 sisyphus+221065.400.4.2 1549734565 installed <13>Jun 28 11:34:59 rpmi: libgnutls-devel-3.6.8-alt1 sisyphus+231079.100.1.1 1559063982 installed <13>Jun 28 11:34:59 rpmi: libxslt-devel-1.1.33-alt1 sisyphus+226936.100.1.1 1554820937 installed <13>Jun 28 11:34:59 rpmi: libicu-devel-1:6.4.2-alt1 sisyphus+227580.100.1.2 1555784329 installed <13>Jun 28 11:34:59 rpmi: libgcrypt-devel-1.8.4-alt3 sisyphus+232944.100.1.1 1561281975 installed <13>Jun 28 11:34:59 rpmi: zlib-devel-1.2.11-alt1 sisyphus+221902.6000.4.1 1550601058 installed <13>Jun 28 11:34:59 rpmi: libgmp-devel-6.1.2-alt3 sisyphus+229304.40.2.1 1557770992 installed <13>Jun 28 11:34:59 rpmi: libffi-devel-1:3.2.1-alt2 1528881777 installed Building target platforms: i586 Building for target i586 Wrote: /usr/src/in/nosrpm/gnustep-BioCocoa-2.2.2-alt3.nosrc.rpm Installing gnustep-BioCocoa-2.2.2-alt3.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.54758 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf gnustep-BioCocoa-2.2.2 + echo 'Source #0 (gnustep-BioCocoa-2.2.2.tar):' Source #0 (gnustep-BioCocoa-2.2.2.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/gnustep-BioCocoa-2.2.2.tar + cd gnustep-BioCocoa-2.2.2 + /bin/chmod -c -Rf u+rwX,go-w . + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.54758 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd gnustep-BioCocoa-2.2.2 + . /usr/share/GNUstep/Makefiles/GNUstep.sh ++ '[' -n '' ']' ++ GNUSTEP_MAKE_STRICT_V2_MODE=no ++ '[' -z '' ']' ++ GNUSTEP_CONFIG_FILE=/etc/GNUstep/GNUstep.conf ++ '[' -z '' ']' ++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf ++ '[' -f /etc/GNUstep/GNUstep.conf ']' ++ . /etc/GNUstep/GNUstep.conf +++ GNUSTEP_SYSTEM_ROOT=/usr +++ GNUSTEP_LOCAL_ROOT=/usr +++ GNUSTEP_NETWORK_ROOT=/usr +++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf +++ GNUSTEP_USER_DIR=GNUstep +++ GNUSTEP_USER_DEFAULTS_DIR=GNUstep/Defaults +++ GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles +++ GNUSTEP_SYSTEM_USERS_DIR=/home +++ GNUSTEP_NETWORK_USERS_DIR=/home +++ GNUSTEP_LOCAL_USERS_DIR=/home +++ GNUSTEP_SYSTEM_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_SYSTEM_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_SYSTEM_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_SYSTEM_TOOLS=/usr/bin +++ GNUSTEP_SYSTEM_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_SYSTEM_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_SYSTEM_HEADERS=/usr/include +++ GNUSTEP_SYSTEM_LIBRARIES=/usr/lib +++ GNUSTEP_SYSTEM_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_SYSTEM_DOC_MAN=/usr/share/man +++ GNUSTEP_SYSTEM_DOC_INFO=/usr/share/info +++ GNUSTEP_NETWORK_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_NETWORK_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_NETWORK_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_NETWORK_TOOLS=/usr/bin +++ GNUSTEP_NETWORK_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_NETWORK_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_NETWORK_HEADERS=/usr/include +++ GNUSTEP_NETWORK_LIBRARIES=/usr/lib +++ GNUSTEP_NETWORK_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_NETWORK_DOC_MAN=/usr/share/man +++ GNUSTEP_NETWORK_DOC_INFO=/usr/share/info +++ GNUSTEP_LOCAL_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_LOCAL_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_LOCAL_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_LOCAL_TOOLS=/usr/bin +++ GNUSTEP_LOCAL_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_LOCAL_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_LOCAL_HEADERS=/usr/include +++ GNUSTEP_LOCAL_LIBRARIES=/usr/lib +++ GNUSTEP_LOCAL_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_LOCAL_DOC_MAN=/usr/share/man +++ GNUSTEP_LOCAL_DOC_INFO=/usr/share/info +++ GNUSTEP_USER_DIR_APPS=GNUstep/Applications +++ GNUSTEP_USER_DIR_ADMIN_APPS=GNUstep/Applications/Admin +++ GNUSTEP_USER_DIR_WEB_APPS=GNUstep/WebApplications +++ GNUSTEP_USER_DIR_TOOLS=GNUstep/Tools +++ GNUSTEP_USER_DIR_ADMIN_TOOLS=GNUstep/Tools/Admin +++ GNUSTEP_USER_DIR_LIBRARY=GNUstep +++ GNUSTEP_USER_DIR_HEADERS=GNUstep/Headers +++ GNUSTEP_USER_DIR_LIBRARIES=GNUstep/Libraries +++ GNUSTEP_USER_DIR_DOC=GNUstep/Documentation +++ GNUSTEP_USER_DIR_DOC_MAN=GNUstep/Documentation/man +++ GNUSTEP_USER_DIR_DOC_INFO=GNUstep/Documentation/info ++ GNUSTEP_HOME=/usr/src ++ '[' -n .GNUstep.conf ']' ++ case "$GNUSTEP_USER_CONFIG_FILE" in ++ '[' -f /usr/src/.GNUstep.conf ']' ++ '[' no = yes ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ export GNUSTEP_SYSTEM_ROOT GNUSTEP_LOCAL_ROOT GNUSTEP_NETWORK_ROOT ++ '[' no = yes ']' ++ GNUSTEP_FLATTENED=yes ++ export GNUSTEP_FLATTENED ++ GNUSTEP_IS_FLATTENED=yes ++ '[' -z gnu-gnu-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_IS_FLATTENED LIBRARY_COMBO ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ export GNUSTEP_MAKEFILES ++ '[' no = yes ']' ++ '[' -z GNUstep ']' ++ case "$GNUSTEP_USER_DIR" in ++ GNUSTEP_USER_ROOT=/usr/src/GNUstep ++ unset GNUSTEP_USER_DIR ++ export GNUSTEP_USER_ROOT ++ '[' -z '' ']' ++ GNUSTEP_HOST= ++ GNUSTEP_HOST_CPU= ++ GNUSTEP_HOST_VENDOR=alt ++ GNUSTEP_HOST_OS=linux-gnu ++ '[' -z '' ']' +++ pwd ++ tmpdir=/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ cd /tmp +++ /usr/share/GNUstep/Makefiles/config.guess ++ GNUSTEP_HOST=i686-pc-linux-gnu +++ /usr/share/GNUstep/Makefiles/config.sub i686-pc-linux-gnu ++ GNUSTEP_HOST=i686-pc-linux-gnu ++ cd /usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ unset tmpdir ++ '[' -z '' ']' +++ /usr/share/GNUstep/Makefiles/cpu.sh i686-pc-linux-gnu ++ GNUSTEP_HOST_CPU=i686 +++ /usr/share/GNUstep/Makefiles/clean_cpu.sh i686 ++ GNUSTEP_HOST_CPU=ix86 ++ '[' -z alt ']' ++ '[' -z linux-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_HOST GNUSTEP_HOST_CPU GNUSTEP_HOST_VENDOR GNUSTEP_HOST_OS ++ . /usr/share/GNUstep/Makefiles/filesystem.sh +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z GNUstep/Applications ']' +++ '[' -z GNUstep/Applications/Admin ']' +++ '[' -z GNUstep/WebApplications ']' +++ '[' -z GNUstep/Tools ']' +++ '[' -z GNUstep/Tools/Admin ']' +++ '[' -z GNUstep ']' +++ '[' -z GNUstep/Headers ']' +++ '[' -z GNUstep/Libraries ']' +++ '[' -z GNUstep/Documentation ']' +++ '[' -z GNUstep/Documentation/man ']' +++ '[' -z GNUstep/Documentation/info ']' +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "$GNUSTEP_USER_DIR_APPS" in +++ GNUSTEP_USER_APPS=/usr/src/GNUstep/Applications +++ unset GNUSTEP_USER_DIR_APPS +++ case "$GNUSTEP_USER_DIR_ADMIN_APPS" in +++ GNUSTEP_USER_ADMIN_APPS=/usr/src/GNUstep/Applications/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_APPS +++ case "$GNUSTEP_USER_DIR_WEB_APPS" in +++ GNUSTEP_USER_WEB_APPS=/usr/src/GNUstep/WebApplications +++ unset GNUSTEP_USER_DIR_WEB_APPS +++ case "$GNUSTEP_USER_DIR_TOOLS" in +++ GNUSTEP_USER_TOOLS=/usr/src/GNUstep/Tools +++ unset GNUSTEP_USER_DIR_TOOLS +++ case "$GNUSTEP_USER_DIR_ADMIN_TOOLS" in +++ GNUSTEP_USER_ADMIN_TOOLS=/usr/src/GNUstep/Tools/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_TOOLS +++ case "$GNUSTEP_USER_DIR_LIBRARY" in +++ GNUSTEP_USER_LIBRARY=/usr/src/GNUstep +++ unset GNUSTEP_USER_DIR_LIBRARY +++ case "$GNUSTEP_USER_DIR_HEADERS" in +++ GNUSTEP_USER_HEADERS=/usr/src/GNUstep/Headers +++ unset GNUSTEP_USER_DIR_HEADERS +++ case "$GNUSTEP_USER_DIR_LIBRARIES" in +++ GNUSTEP_USER_LIBRARIES=/usr/src/GNUstep/Libraries +++ unset GNUSTEP_USER_DIR_LIBRARIES +++ case "$GNUSTEP_USER_DIR_DOC" in +++ GNUSTEP_USER_DOC=/usr/src/GNUstep/Documentation +++ unset GNUSTEP_USER_DIR_DOC +++ case "$GNUSTEP_USER_DIR_DOC_MAN" in +++ GNUSTEP_USER_DOC_MAN=/usr/src/GNUstep/Documentation/man +++ unset GNUSTEP_USER_DIR_DOC_MAN +++ case "$GNUSTEP_USER_DIR_DOC_INFO" in +++ GNUSTEP_USER_DOC_INFO=/usr/src/GNUstep/Documentation/info +++ unset GNUSTEP_USER_DIR_DOC_INFO ++ unset GNUSTEP_HOME ++ fixup_paths=no +++ echo /usr/share/GNUstep/Makefiles +++ sed 's|^[a-zA-Z]:/.*$||' ++ path_check=/usr/share/GNUstep/Makefiles ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ unset path_check ++ '[' no = yes ']' ++ '[' -z /usr:/usr/src/GNUstep ']' +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Tools /usr/bin /usr/bin /usr/bin no ++ GNUSTEP_TOOLS_PATHLIST=/usr/bin:/usr/src/GNUstep/Tools ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/src/GNUstep/Tools/Admin -a -w /usr/src/GNUstep/Tools/Admin ']' ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/bin ++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/bin: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/src/GNUstep/Tools ++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/src/GNUstep/Tools: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_TOOLS_PATHLIST ++ export PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Libraries /usr/lib /usr/lib /usr/lib no ++ GNUSTEP_LIBRARIES_PATHLIST=/usr/lib:/usr/src/GNUstep/Libraries ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/lib ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib: ++ grep -v :/usr/lib: ++ export LD_LIBRARY_PATH ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/src/GNUstep/Libraries ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib: ++ grep -v :/usr/src/GNUstep/Libraries: ++ export LD_LIBRARY_PATH ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARIES_PATHLIST ++ case "$GNUSTEP_HOST_OS" in +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep /usr/lib/GNUstep /usr/lib/GNUstep /usr/lib/GNUstep no ++ GNUSTEP_LIBRARY_PATHLIST=/usr/lib/GNUstep:/usr/src/GNUstep ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/lib/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java ']' ++ grep -v :/usr/lib/GNUstep/Libraries/Java: ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java: ++ path_fragment=/usr/lib/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile: ++ grep -v :/usr/lib/GNUstep/Libraries/Guile: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/src/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java ']' ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java: ++ grep -v :/usr/src/GNUstep/Libraries/Java: ++ path_fragment=/usr/src/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile: ++ grep -v :/usr/src/GNUstep/Libraries/Guile: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARY_PATHLIST ++ export CLASSPATH ++ export GUILE_LOAD_PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Documentation/info /usr/share/info /usr/share/info /usr/share/info no ++ GNUSTEP_INFO_PATHLIST=/usr/share/info:/usr/src/GNUstep/Documentation/info ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/share/info: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/src/GNUstep/Documentation/info: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset GNUSTEP_INFO_PATHLIST ++ export INFOPATH ++ '[' -n '' ']' ++ '[' no = yes ']' ++ unset GNUSTEP_MAKE_STRICT_V2_MODE ++ '[' -z '' ']' ++ unset GNUSTEP_CONFIG_FILE ++ unset GNUSTEP_KEEP_CONFIG_FILE ++ '[' -z '' ']' ++ unset GNUSTEP_USER_CONFIG_FILE ++ unset GNUSTEP_KEEP_USER_CONFIG_FILE ++ unset GNUSTEP_USER_DEFAULTS_DIR ++ unset GNUSTEP_SYSTEM_APPS ++ unset GNUSTEP_SYSTEM_ADMIN_APPS ++ unset GNUSTEP_SYSTEM_WEB_APPS ++ unset GNUSTEP_SYSTEM_TOOLS ++ unset GNUSTEP_SYSTEM_ADMIN_TOOLS ++ unset GNUSTEP_SYSTEM_LIBRARY ++ unset GNUSTEP_SYSTEM_HEADERS ++ unset GNUSTEP_SYSTEM_LIBRARIES ++ unset GNUSTEP_SYSTEM_DOC ++ unset GNUSTEP_SYSTEM_DOC_MAN ++ unset GNUSTEP_SYSTEM_DOC_INFO ++ unset GNUSTEP_NETWORK_APPS ++ unset GNUSTEP_NETWORK_ADMIN_APPS ++ unset GNUSTEP_NETWORK_WEB_APPS ++ unset GNUSTEP_NETWORK_TOOLS ++ unset GNUSTEP_NETWORK_ADMIN_TOOLS ++ unset GNUSTEP_NETWORK_LIBRARY ++ unset GNUSTEP_NETWORK_HEADERS ++ unset GNUSTEP_NETWORK_LIBRARIES ++ unset GNUSTEP_NETWORK_DOC ++ unset GNUSTEP_NETWORK_DOC_MAN ++ unset GNUSTEP_NETWORK_DOC_INFO ++ unset GNUSTEP_LOCAL_APPS ++ unset GNUSTEP_LOCAL_ADMIN_APPS ++ unset GNUSTEP_LOCAL_WEB_APPS ++ unset GNUSTEP_LOCAL_TOOLS ++ unset GNUSTEP_LOCAL_ADMIN_TOOLS ++ unset GNUSTEP_LOCAL_LIBRARY ++ unset GNUSTEP_LOCAL_HEADERS ++ unset GNUSTEP_LOCAL_LIBRARIES ++ unset GNUSTEP_LOCAL_DOC ++ unset GNUSTEP_LOCAL_DOC_MAN ++ unset GNUSTEP_LOCAL_DOC_INFO ++ unset GNUSTEP_USER_APPS ++ unset GNUSTEP_USER_ADMIN_APPS ++ unset GNUSTEP_USER_WEB_APPS ++ unset GNUSTEP_USER_TOOLS ++ unset GNUSTEP_USER_ADMIN_TOOLS ++ unset GNUSTEP_USER_LIBRARY ++ unset GNUSTEP_USER_HEADERS ++ unset GNUSTEP_USER_LIBRARIES ++ unset GNUSTEP_USER_DOC ++ unset GNUSTEP_USER_DOC_MAN ++ unset GNUSTEP_USER_DOC_INFO ++ unset GNUSTEP_SYSTEM_USERS_DIR ++ unset GNUSTEP_LOCAL_USERS_DIR ++ unset GNUSTEP_NETWORK_USERS_DIR ++ '[' -n '' ']' + make -j8 messages=yes debug=yes strip=no shared=yes 'CONFIG_SYSTEM_LIBS=-lgnustep-base -lobjc2' make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' This is gnustep-make 2.6.6. Type 'gmake print-gnustep-make-help' for help. make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' Making build-headers in subprojects of framework BioCocoa... Making build-headers in subprojects of subproject BCFoundation... Making build-headers for subproject BCAlignment... /usr/share/GNUstep/Makefiles/mkinstalldirs ../../BioCocoa.framework/Versions/2/Headers /bin/install -c -p -m 644 BCPairwiseAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h /bin/install -c -p -m 644 BCScoreMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCScoreMatrix.h /bin/install -c -p -m 644 BCSequenceAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceAlignment.h Making build-headers for subproject BCAnalysis... /bin/install -c -p -m 644 BCMCP.h ../../BioCocoa.framework/Versions/2/Headers/BCMCP.h /bin/install -c -p -m 644 BCSuffixArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSuffixArray.h Making build-headers for subproject BCGeneExpression... /bin/install -c -p -m 644 BCSeries.h ../../BioCocoa.framework/Versions/2/Headers/BCSeries.h /bin/install -c -p -m 644 BCSample.h ../../BioCocoa.framework/Versions/2/Headers/BCSample.h /bin/install -c -p -m 644 BCPlatform.h ../../BioCocoa.framework/Versions/2/Headers/BCPlatform.h /bin/install -c -p -m 644 BCParseSOFT.h ../../BioCocoa.framework/Versions/2/Headers/BCParseSOFT.h Making build-headers for subproject BCGeneticCode... /bin/install -c -p -m 644 BCCodonDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonDNA.h /bin/install -c -p -m 644 BCCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCCodon.h /bin/install -c -p -m 644 BCCodonRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonRNA.h /bin/install -c -p -m 644 BCGeneticCode.h ../../BioCocoa.framework/Versions/2/Headers/BCGeneticCode.h Making build-headers for subproject BCProteinStructure... /bin/install -c -p -m 644 BCAtom.h ../../BioCocoa.framework/Versions/2/Headers/BCAtom.h /bin/install -c -p -m 644 BCProteinStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCProteinStructure.h /bin/install -c -p -m 644 BCSecondaryStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSecondaryStructure.h /bin/install -c -p -m 644 BCChain.h ../../BioCocoa.framework/Versions/2/Headers/BCChain.h /bin/install -c -p -m 644 BCResidue.h ../../BioCocoa.framework/Versions/2/Headers/BCResidue.h /bin/install -c -p -m 644 BCSequenceStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceStructure.h Making build-headers for subproject BCSequence... /bin/install -c -p -m 644 BCAnnotation.h ../../BioCocoa.framework/Versions/2/Headers/BCAnnotation.h /bin/install -c -p -m 644 BCSequence.h ../../BioCocoa.framework/Versions/2/Headers/BCSequence.h /bin/install -c -p -m 644 BCSequenceArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceArray.h /bin/install -c -p -m 644 BCSequenceCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceCodon.h Making build-headers for subproject BCSequenceIO... /bin/install -c -p -m 644 BCSequenceReader.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceReader.h /bin/install -c -p -m 644 BCSequenceWriter.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceWriter.h /bin/install -c -p -m 644 BCCachedSequenceFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedSequenceFile.h /bin/install -c -p -m 644 BCCachedFastaFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedFastaFile.h Making build-headers for subproject BCSymbol... /bin/install -c -p -m 644 BCAminoAcid.h ../../BioCocoa.framework/Versions/2/Headers/BCAminoAcid.h /bin/install -c -p -m 644 BCNucleotide.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotide.h /bin/install -c -p -m 644 BCSymbol.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbol.h /bin/install -c -p -m 644 BCNucleotideDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideDNA.h /bin/install -c -p -m 644 BCNucleotideRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideRNA.h /bin/install -c -p -m 644 BCSymbolSet.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbolSet.h Making build-headers for subproject BCTools... /bin/install -c -p -m 644 BCSequenceTool.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceTool.h /bin/install -c -p -m 644 BCToolDigest.h ../../BioCocoa.framework/Versions/2/Headers/BCToolDigest.h /bin/install -c -p -m 644 BCToolHydropathyCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolHydropathyCalculator.h /bin/install -c -p -m 644 BCToolMassCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolMassCalculator.h /bin/install -c -p -m 644 BCToolComplement.h ../../BioCocoa.framework/Versions/2/Headers/BCToolComplement.h /bin/install -c -p -m 644 BCToolSequenceFinder.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSequenceFinder.h /bin/install -c -p -m 644 BCToolSymbolCounter.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSymbolCounter.h /bin/install -c -p -m 644 BCToolTranslator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslator.h /bin/install -c -p -m 644 BCToolTranslatorDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslatorDNA.h Making build-headers for subproject BCUtils... /bin/install -c -p -m 644 BCDataMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCDataMatrix.h /bin/install -c -p -m 644 BCUtilData.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilData.h /bin/install -c -p -m 644 BCUtilStrings.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilStrings.h Making build-headers for subproject BCFoundation... /bin/install -c -p -m 644 BCFoundation.h ../BioCocoa.framework/Versions/2/Headers/BCFoundation.h /bin/install -c -p -m 644 BCFoundationDefines.h ../BioCocoa.framework/Versions/2/Headers/BCFoundationDefines.h /bin/install -c -p -m 644 BCStringDefinitions.h ../BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h /bin/install -c -p -m 644 BCPreferences.h ../BioCocoa.framework/Versions/2/Headers/BCPreferences.h Making build-headers for framework BioCocoa... /usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \ touch derived_src/.stamp /usr/share/GNUstep/Makefiles/mkinstalldirs BioCocoa.framework/Versions/2/Resources cd ./BioCocoa.framework/Versions; \ rm -f Current; \ ln -s 2 Current cd ./BioCocoa.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "BioCocoa" ]; then \ rm -f ./BioCocoa; \ ln -s ../BioCocoa.framework/Headers \ ./BioCocoa; \ fi make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' Making all in subprojects of framework BioCocoa... gmake[1]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[1]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation' Making all in subprojects of subproject BCFoundation... gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAlignment' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAlignment' Making all for subproject BCAlignment... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCAlignment.obj/ gcc BCScoreMatrix.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAlignment.obj/BCScoreMatrix.m.o gcc BCSequenceAlignment.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAlignment.obj/BCSequenceAlignment.m.o gcc BCPairwiseAlignment.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAlignment.obj/BCPairwiseAlignment.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCAlignment.obj/BCPairwiseAlignment.m.o obj/BCAlignment.obj/BCScoreMatrix.m.o obj/BCAlignment.obj/BCSequenceAlignment.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAnalysis' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAnalysis' Making all for subproject BCAnalysis... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCAnalysis.obj/ gcc BCMCP.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAnalysis.obj/BCMCP.m.o BCMCP.m: In function '+[BCMCP mcpToFile:suffixArray:withSuffixArray:lowerBound:]': BCMCP.m:160:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1Offset, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:161:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1File, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:163:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2Offset, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:164:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2File, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:334:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2Offset, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:335:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2File, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:352:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1Offset, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:353:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1File, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:358:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2Offset, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:359:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2File, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:366:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2Offset, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:367:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2File, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP intersectToFile:withMCP:]': BCMCP.m:486:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:487:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:489:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:490:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:514:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:515:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:517:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:518:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:735:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:736:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:738:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:739:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:762:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:763:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:765:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:766:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP unionToFile:withMCP:]': BCMCP.m:910:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:911:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:913:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:914:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:936:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:937:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:939:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:940:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1093:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1094:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1096:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1097:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1123:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1124:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1126:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1127:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1167:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1168:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1170:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1171:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1186:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1187:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1189:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1190:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1222:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1223:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1225:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1226:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1239:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1240:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1242:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1243:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP trimToFile:]': BCMCP.m:1272:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpLength, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1273:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpNumFiles, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1275:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpOffset[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1276:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpFile[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP outputFormat:withMinimumLength:]': BCMCP.m:1481:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpLength, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1482:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpNumFiles, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1485:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpOffset[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1486:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpFile[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1603:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpLength, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1604:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpNumFiles, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1606:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpOffset[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1607:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpFile[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc BCSuffixArray.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAnalysis.obj/BCSuffixArray.m.o BCSuffixArray.m: In function '-[BCSuffixArray dumpSuffixArray]': BCSuffixArray.m:896:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1Offset, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:897:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1File, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:932:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1Offset, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:933:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1File, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m: In function '-[BCSuffixArrayUnionEnumerator nextSuffixPosition:sequence:suffixArray:]': BCSuffixArray.m:1464:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(suffixPositions[i]), sizeof(int), 1, arrayFiles[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:1465:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(suffixSequences[i]), sizeof(int), 1, arrayFiles[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:1598:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(suffixPositions[currentSuffix]), sizeof(int), 1, arrayFiles[currentSuffix]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:1599:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(suffixSequences[currentSuffix]), sizeof(int), 1, arrayFiles[currentSuffix]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCAnalysis.obj/BCMCP.m.o obj/BCAnalysis.obj/BCSuffixArray.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneExpression' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneExpression' Making all for subproject BCGeneExpression... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCGeneExpression.obj/ gcc BCSample.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCSample.m.o gcc BCPlatform.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCPlatform.m.o gcc BCSeries.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCSeries.m.o gcc BCParseSOFT.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCParseSOFT.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCGeneExpression.obj/BCSeries.m.o obj/BCGeneExpression.obj/BCSample.m.o obj/BCGeneExpression.obj/BCPlatform.m.o obj/BCGeneExpression.obj/BCParseSOFT.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode' Making all for subproject BCGeneticCode... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCGeneticCode.obj/ gcc BCGeneticCode.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCGeneticCode.m.o BCGeneticCode.m: In function '+[BCGeneticCode priv:createCodonArraysFromDictionary:]': BCGeneticCode.m:221:23: warning: variable 'RNACodon' set but not used [-Wunused-but-set-variable] BCCodon *aCodon, *RNACodon; ^~~~~~~~ gcc BCCodon.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCCodon.m.o gcc BCCodonDNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCCodonDNA.m.o gcc BCCodonRNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCCodonRNA.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCGeneticCode.obj/BCCodonDNA.m.o obj/BCGeneticCode.obj/BCCodon.m.o obj/BCGeneticCode.obj/BCCodonRNA.m.o obj/BCGeneticCode.obj/BCGeneticCode.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCProteinStructure' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCProteinStructure' Making all for subproject BCProteinStructure... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCProteinStructure.obj/ gcc BCProteinStructure.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCProteinStructure.m.o gcc BCResidue.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCResidue.m.o gcc BCSecondaryStructure.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCSecondaryStructure.m.o gcc BCAtom.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCAtom.m.o gcc BCChain.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCChain.m.o gcc BCSequenceStructure.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCSequenceStructure.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCProteinStructure.obj/BCAtom.m.o obj/BCProteinStructure.obj/BCProteinStructure.m.o obj/BCProteinStructure.obj/BCSecondaryStructure.m.o obj/BCProteinStructure.obj/BCChain.m.o obj/BCProteinStructure.obj/BCResidue.m.o obj/BCProteinStructure.obj/BCSequenceStructure.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequence' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequence' Making all for subproject BCSequence... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCSequence.obj/ gcc BCSequenceArray.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCSequenceArray.m.o gcc BCAnnotation.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCAnnotation.m.o gcc BCSequenceCodon.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCSequenceCodon.m.o BCSequenceCodon.m: In function '-[BCSequenceCodon openReadingFramesLongerThanCutoff:]': BCSequenceCodon.m:301:16: warning: 'inORF' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( inORF ) ^ gcc BCSequence.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCSequence.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCSequence.obj/BCAnnotation.m.o obj/BCSequence.obj/BCSequence.m.o obj/BCSequence.obj/BCSequenceArray.m.o obj/BCSequence.obj/BCSequenceCodon.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO' Making all for subproject BCSequenceIO... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCSequenceIO.obj/ gcc BCSequenceWriter.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCSequenceWriter.m.o gcc BCCachedFastaFile.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCCachedFastaFile.m.o BCCachedFastaFile.m: In function '-[BCCachedFastaFile initWithContentsOfFile:]': BCCachedFastaFile.m:58:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&c, sizeof(char), 1, g1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m:73:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&c, sizeof(char), 1, g1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m:76:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&c, sizeof(char), 1, g1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m:97:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&c, sizeof(char), 1, g1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m: In function '-[BCCachedFastaFile symbols:ForCurrentSequenceAtPosition:ofLength:]': BCCachedFastaFile.m:149:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&c, sizeof(char), 1, fileHandle); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m: In function '-[BCCachedFastaFile initWithContentsOfFile:]': BCCachedFastaFile.m:104:3: warning: 'filePos' may be used uninitialized in this function [-Wmaybe-uninitialized] [d setObject: [NSNumber numberWithUnsignedLongLong: (filePos - 1)] forKey: @"end"]; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc BCCachedSequenceFile.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCCachedSequenceFile.m.o gcc BCSequenceReader.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCSequenceReader.m.o BCSequenceReader.m: In function '-[BCSequenceReader readFileUsingText:]': BCSequenceReader.m:167:3: warning: no '-initWithRTF:documentAttributes:' method found NSAttributedString *rtfstring = [[NSAttributedString alloc] initWithRTF: [entryString dataUsingEncoding: NSUTF8StringEncoding] documentAttributes: nil]; ^~~~~~~~~~~~~~~~~~ BCSequenceReader.m:167:3: warning: (Messages without a matching method signature BCSequenceReader.m:167:3: warning: will be assumed to return 'id' and accept BCSequenceReader.m:167:3: warning: '...' as arguments.) BCSequenceReader.m: In function '-[BCSequenceReader readMacVectorFile:]': BCSequenceReader.m:651:18: warning: variable 'annotationsArray' set but not used [-Wunused-but-set-variable] NSMutableArray *annotationsArray; ^~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readClustalFile:]': BCSequenceReader.m:798:3: warning: passing argument 2 of 'scanUpToString:intoString:' from incompatible pointer type [-Wincompatible-pointer-types] [lineScanner scanUpToString:@" " intoString: nil]; ^ BCSequenceReader.m:798:3: note: expected 'struct NSString **' but argument is of type 'id' BCSequenceReader.m: In function '-[BCSequenceReader readPhylipFile:]': BCSequenceReader.m:1113:31: warning: variable 'annotationsArray' set but not used [-Wunused-but-set-variable] NSMutableArray *linesArray, *annotationsArray, *namesArray, *sequenceArray; ^~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readSwissProtFile:]': BCSequenceReader.m:421:2: warning: 'sequenceString' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( [sequenceString length]) ~~~~~~~~~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readClustalFile:]': BCSequenceReader.m:822:3: warning: 'sequenceRange.location' may be used uninitialized in this function [-Wmaybe-uninitialized] sequenceString = [line substringFromIndex: sequenceRange.location]; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readFASTQFile:]': BCSequenceReader.m:1310:6: warning: 'seqData' may be used uninitialized in this function [-Wmaybe-uninitialized] BCSequence *newSequence = [[BCSequence alloc] initWithData: seqData symbolSet: nil]; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCSequenceIO.obj/BCSequenceReader.m.o obj/BCSequenceIO.obj/BCSequenceWriter.m.o obj/BCSequenceIO.obj/BCCachedSequenceFile.m.o obj/BCSequenceIO.obj/BCCachedFastaFile.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSymbol' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSymbol' Making all for subproject BCSymbol... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCSymbol.obj/ gcc BCSymbol.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCSymbol.m.o gcc BCNucleotide.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCNucleotide.m.o gcc BCSymbolSet.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCSymbolSet.m.o gcc BCNucleotideRNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCNucleotideRNA.m.o gcc BCNucleotideDNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCNucleotideDNA.m.o gcc BCAminoAcid.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCAminoAcid.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCSymbol.obj/BCAminoAcid.m.o obj/BCSymbol.obj/BCNucleotide.m.o obj/BCSymbol.obj/BCSymbol.m.o obj/BCSymbol.obj/BCNucleotideDNA.m.o obj/BCSymbol.obj/BCNucleotideRNA.m.o obj/BCSymbol.obj/BCSymbolSet.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCTools' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCTools' Making all for subproject BCTools... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCTools.obj/ gcc BCSequenceTool.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCSequenceTool.m.o gcc BCToolHydropathyCalculator.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolHydropathyCalculator.m.o gcc BCToolMassCalculator.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolMassCalculator.m.o gcc BCToolTranslatorDNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolTranslatorDNA.m.o gcc BCToolSymbolCounter.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolSymbolCounter.m.o gcc BCToolDigest.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolDigest.m.o gcc BCToolComplement.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolComplement.m.o gcc BCToolTranslator.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolTranslator.m.o gcc BCToolSequenceFinder.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolSequenceFinder.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCTools.obj/BCSequenceTool.m.o obj/BCTools.obj/BCToolDigest.m.o obj/BCTools.obj/BCToolHydropathyCalculator.m.o obj/BCTools.obj/BCToolMassCalculator.m.o obj/BCTools.obj/BCToolComplement.m.o obj/BCTools.obj/BCToolSequenceFinder.m.o obj/BCTools.obj/BCToolSymbolCounter.m.o obj/BCTools.obj/BCToolTranslator.m.o obj/BCTools.obj/BCToolTranslatorDNA.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCUtils' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCUtils' Making all for subproject BCUtils... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCUtils.obj/ gcc BCUtilData.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCUtils.obj/BCUtilData.m.o gcc BCUtilStrings.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCUtils.obj/BCUtilStrings.m.o BCUtilStrings.m: In function '-[NSString(StringAdditions) stringBeginsWithTwoNumbers]': BCUtilStrings.m:98:2: warning: passing argument 1 of 'scanInt:' from incompatible pointer type [-Wincompatible-pointer-types] if ([scanner scanInt:nil]) ^~ BCUtilStrings.m:98:2: note: expected 'int *' but argument is of type 'id' BCUtilStrings.m:100:3: warning: passing argument 1 of 'scanInt:' from incompatible pointer type [-Wincompatible-pointer-types] if ([scanner scanInt:nil]) ^~ BCUtilStrings.m:100:3: note: expected 'int *' but argument is of type 'id' gcc BCDataMatrix.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCUtils.obj/BCDataMatrix.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCUtils.obj/BCDataMatrix.m.o obj/BCUtils.obj/BCUtilData.m.o obj/BCUtils.obj/BCUtilStrings.m.o ; Making all for subproject BCFoundation... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCFoundation.obj/ gcc BCStringDefinitions.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I. -I./BCAnalysis -I./BCGeneticCode -I./BCProteinStructure -I./BCSequence -I./BCSequenceIO -I./BCSymbol -I./BCTools -I./BCTools/BCDigest -I./BCTools/BCSequenceProperty -I./BCTools/BCSequenceTools -I./BCTools/BCTranslation -I./BCUtils -I./../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCFoundation.obj/BCStringDefinitions.m.o gcc BCPreferences.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I. -I./BCAnalysis -I./BCGeneticCode -I./BCProteinStructure -I./BCSequence -I./BCSequenceIO -I./BCSymbol -I./BCTools -I./BCTools/BCDigest -I./BCTools/BCSequenceProperty -I./BCTools/BCSequenceTools -I./BCTools/BCTranslation -I./BCUtils -I./../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCFoundation.obj/BCPreferences.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCFoundation.obj/BCStringDefinitions.m.o obj/BCFoundation.obj/BCPreferences.m.o BCAlignment/obj/subproject.o BCAnalysis/obj/subproject.o BCGeneExpression/obj/subproject.o BCGeneticCode/obj/subproject.o BCProteinStructure/obj/subproject.o BCSequence/obj/subproject.o BCSequenceIO/obj/subproject.o BCSymbol/obj/subproject.o BCTools/obj/subproject.o BCUtils/obj/subproject.o ; Making all for framework BioCocoa... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BioCocoa.obj/ classes=""; \ for object_file in ./BCFoundation/obj/subproject.o __dummy__; do \ if [ "$object_file" != "__dummy__" ]; then \ sym=`nm -Pg $object_file | sed -n -e '/^__objc_class_name_[A-Za-z0-9_.]* [^U]/ {s/^__objc_class_name_\([A-Za-z0-9_.]*\) [^U].*/\1/p;}'`; \ classes="$classes $sym"; \ fi; \ done; \ classlist=""; \ classarray=""; \ for f in $classes __dummy__ ; do \ if [ "$f" != "__dummy__" ]; then \ if [ "$classlist" = "" ]; then \ classlist="@\"$f\""; \ classarray="(\"$f\""; \ else \ classlist="$classlist, @\"$f\""; \ classarray="$classarray, \"$f\""; \ fi; \ fi; \ done; \ if [ "$classlist" = "" ]; then \ classlist="NULL"; \ classarray="()"; \ else \ classlist="$classlist, NULL"; \ classarray="$classarray)"; \ fi; \ echo "$classarray" > ./derived_src/BioCocoa-class-list; \ echo "#include " > derived_src/NSFramework_BioCocoa.m; \ echo "#include " > derived_src/NSFramework_BioCocoa.m; \ echo "@interface NSFramework_BioCocoa : NSObject" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkEnv;" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkPath;" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkVersion;" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *const*)frameworkClasses;" >> derived_src/NSFramework_BioCocoa.m; \ echo "@end" >> derived_src/NSFramework_BioCocoa.m; \ echo "@implementation NSFramework_BioCocoa" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkEnv { return nil; }" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkPath { return @\"/usr/lib/GNUstep/Frameworks\"; }" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkVersion { return @\"2\"; }" >> derived_src/NSFramework_BioCocoa.m; \ echo "static NSString *allClasses[] = {$classlist};" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *const*)frameworkClasses { return allClasses; }" >> derived_src/NSFramework_BioCocoa.m;\ echo "@end" >> derived_src/NSFramework_BioCocoa.m gcc derived_src/NSFramework_BioCocoa.m -c -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I./derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 -o obj/BioCocoa.obj/NSFramework_BioCocoa.o \ gcc -shared -Wl,-soname,libBioCocoa.so.2 -rdynamic -shared-libgcc -pthread -fexceptions -o ./BioCocoa.framework/Versions/2/./libBioCocoa.so.2.2.2 obj/BioCocoa.obj/NSFramework_BioCocoa.o BCFoundation/obj/subproject.o -L/usr/src/GNUstep/Libraries -L/usr/lib -L/usr/lib -L/usr/lib -L/usr/lib -lgnustep-base -lobjc2 && (cd ./BioCocoa.framework/Versions/2/.; rm -f libBioCocoa.so; if [ "libBioCocoa.so.2" != "libBioCocoa.so.2.2.2" ]; then rm -f libBioCocoa.so.2; ln -s libBioCocoa.so.2.2.2 libBioCocoa.so.2; fi; ln -s libBioCocoa.so.2 libBioCocoa.so; ) || rm -f ./BioCocoa.framework/Versions/2/./libBioCocoa.so.2.2.2 ; \ (cd ./BioCocoa.framework/Versions/2/.; \ rm -f BioCocoa; \ ln -s libBioCocoa.so BioCocoa) \ /usr/bin/ld.default: BCFoundation/obj/subproject.o: in function `_i_BCSuffixArray__constructFromSequenceArray_strand_': /usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAnalysis/BCSuffixArray.m:513: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' for f in BCFoundation/BCSymbol/SymbolTemplates/nucleotides.plist BCFoundation/BCSymbol/SymbolTemplates/aminoacids.plist; do \ if [ -f .//$f -o -d .//$f ]; then \ cp -fr .//$f ./BioCocoa.framework/Versions/2/Resources/; \ else \ echo "Warning: .//$f not found - ignoring"; \ fi; \ done for subproject in BCFoundation; do \ if [ -d $subproject/Resources/Subproject ]; then \ for f in $subproject/Resources/Subproject/*; do \ if [ $f != $subproject'/Resources/Subproject/*' ]; then \ cp -fr $f ./BioCocoa.framework/Versions/2/Resources/; \ fi; \ done; \ fi; \ done (echo "{"; echo ' NOTE = "Automatically generated, do not edit!";'; \ echo " NSExecutable = \"BioCocoa\";"; \ echo " NSMainNibFile = \"\";"; \ echo " NSPrincipalClass = \"BioCocoa\";"; \ echo " Classes = "; \ cat ./derived_src/BioCocoa-class-list; \ echo " ;"; \ echo "}") >BioCocoa.framework/Versions/2/Resources/Info-gnustep.plist if [ -r "" ]; then \ plmerge BioCocoa.framework/Versions/2/Resources/Info-gnustep.plist ; \ fi cd ./BioCocoa.framework/.; \ rm -f BioCocoa libBioCocoa.so; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./BioCocoa short` \ BioCocoa; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./libBioCocoa.so short` \ libBioCocoa.so + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.17956 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/gnustep-BioCocoa-buildroot + : + /bin/rm -rf -- /usr/src/tmp/gnustep-BioCocoa-buildroot + cd gnustep-BioCocoa-2.2.2 + . /usr/share/GNUstep/Makefiles/GNUstep.sh ++ '[' -n '' ']' ++ GNUSTEP_MAKE_STRICT_V2_MODE=no ++ '[' -z '' ']' ++ GNUSTEP_CONFIG_FILE=/etc/GNUstep/GNUstep.conf ++ '[' -z '' ']' ++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf ++ '[' -f /etc/GNUstep/GNUstep.conf ']' ++ . /etc/GNUstep/GNUstep.conf +++ GNUSTEP_SYSTEM_ROOT=/usr +++ GNUSTEP_LOCAL_ROOT=/usr +++ GNUSTEP_NETWORK_ROOT=/usr +++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf +++ GNUSTEP_USER_DIR=GNUstep +++ GNUSTEP_USER_DEFAULTS_DIR=GNUstep/Defaults +++ GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles +++ GNUSTEP_SYSTEM_USERS_DIR=/home +++ GNUSTEP_NETWORK_USERS_DIR=/home +++ GNUSTEP_LOCAL_USERS_DIR=/home +++ GNUSTEP_SYSTEM_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_SYSTEM_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_SYSTEM_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_SYSTEM_TOOLS=/usr/bin +++ GNUSTEP_SYSTEM_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_SYSTEM_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_SYSTEM_HEADERS=/usr/include +++ GNUSTEP_SYSTEM_LIBRARIES=/usr/lib +++ GNUSTEP_SYSTEM_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_SYSTEM_DOC_MAN=/usr/share/man +++ GNUSTEP_SYSTEM_DOC_INFO=/usr/share/info +++ GNUSTEP_NETWORK_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_NETWORK_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_NETWORK_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_NETWORK_TOOLS=/usr/bin +++ GNUSTEP_NETWORK_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_NETWORK_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_NETWORK_HEADERS=/usr/include +++ GNUSTEP_NETWORK_LIBRARIES=/usr/lib +++ GNUSTEP_NETWORK_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_NETWORK_DOC_MAN=/usr/share/man +++ GNUSTEP_NETWORK_DOC_INFO=/usr/share/info +++ GNUSTEP_LOCAL_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_LOCAL_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_LOCAL_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_LOCAL_TOOLS=/usr/bin +++ GNUSTEP_LOCAL_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_LOCAL_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_LOCAL_HEADERS=/usr/include +++ GNUSTEP_LOCAL_LIBRARIES=/usr/lib +++ GNUSTEP_LOCAL_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_LOCAL_DOC_MAN=/usr/share/man +++ GNUSTEP_LOCAL_DOC_INFO=/usr/share/info +++ GNUSTEP_USER_DIR_APPS=GNUstep/Applications +++ GNUSTEP_USER_DIR_ADMIN_APPS=GNUstep/Applications/Admin +++ GNUSTEP_USER_DIR_WEB_APPS=GNUstep/WebApplications +++ GNUSTEP_USER_DIR_TOOLS=GNUstep/Tools +++ GNUSTEP_USER_DIR_ADMIN_TOOLS=GNUstep/Tools/Admin +++ GNUSTEP_USER_DIR_LIBRARY=GNUstep +++ GNUSTEP_USER_DIR_HEADERS=GNUstep/Headers +++ GNUSTEP_USER_DIR_LIBRARIES=GNUstep/Libraries +++ GNUSTEP_USER_DIR_DOC=GNUstep/Documentation +++ GNUSTEP_USER_DIR_DOC_MAN=GNUstep/Documentation/man +++ GNUSTEP_USER_DIR_DOC_INFO=GNUstep/Documentation/info ++ GNUSTEP_HOME=/usr/src ++ '[' -n .GNUstep.conf ']' ++ case "$GNUSTEP_USER_CONFIG_FILE" in ++ '[' -f /usr/src/.GNUstep.conf ']' ++ '[' no = yes ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ export GNUSTEP_SYSTEM_ROOT GNUSTEP_LOCAL_ROOT GNUSTEP_NETWORK_ROOT ++ '[' no = yes ']' ++ GNUSTEP_FLATTENED=yes ++ export GNUSTEP_FLATTENED ++ GNUSTEP_IS_FLATTENED=yes ++ '[' -z gnu-gnu-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_IS_FLATTENED LIBRARY_COMBO ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ export GNUSTEP_MAKEFILES ++ '[' no = yes ']' ++ '[' -z GNUstep ']' ++ case "$GNUSTEP_USER_DIR" in ++ GNUSTEP_USER_ROOT=/usr/src/GNUstep ++ unset GNUSTEP_USER_DIR ++ export GNUSTEP_USER_ROOT ++ '[' -z '' ']' ++ GNUSTEP_HOST= ++ GNUSTEP_HOST_CPU= ++ GNUSTEP_HOST_VENDOR=alt ++ GNUSTEP_HOST_OS=linux-gnu ++ '[' -z '' ']' +++ pwd ++ tmpdir=/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ cd /tmp +++ /usr/share/GNUstep/Makefiles/config.guess ++ GNUSTEP_HOST=i686-pc-linux-gnu +++ /usr/share/GNUstep/Makefiles/config.sub i686-pc-linux-gnu ++ GNUSTEP_HOST=i686-pc-linux-gnu ++ cd /usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ unset tmpdir ++ '[' -z '' ']' +++ /usr/share/GNUstep/Makefiles/cpu.sh i686-pc-linux-gnu ++ GNUSTEP_HOST_CPU=i686 +++ /usr/share/GNUstep/Makefiles/clean_cpu.sh i686 ++ GNUSTEP_HOST_CPU=ix86 ++ '[' -z alt ']' ++ '[' -z linux-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_HOST GNUSTEP_HOST_CPU GNUSTEP_HOST_VENDOR GNUSTEP_HOST_OS ++ . /usr/share/GNUstep/Makefiles/filesystem.sh +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z GNUstep/Applications ']' +++ '[' -z GNUstep/Applications/Admin ']' +++ '[' -z GNUstep/WebApplications ']' +++ '[' -z GNUstep/Tools ']' +++ '[' -z GNUstep/Tools/Admin ']' +++ '[' -z GNUstep ']' +++ '[' -z GNUstep/Headers ']' +++ '[' -z GNUstep/Libraries ']' +++ '[' -z GNUstep/Documentation ']' +++ '[' -z GNUstep/Documentation/man ']' +++ '[' -z GNUstep/Documentation/info ']' +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "$GNUSTEP_USER_DIR_APPS" in +++ GNUSTEP_USER_APPS=/usr/src/GNUstep/Applications +++ unset GNUSTEP_USER_DIR_APPS +++ case "$GNUSTEP_USER_DIR_ADMIN_APPS" in +++ GNUSTEP_USER_ADMIN_APPS=/usr/src/GNUstep/Applications/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_APPS +++ case "$GNUSTEP_USER_DIR_WEB_APPS" in +++ GNUSTEP_USER_WEB_APPS=/usr/src/GNUstep/WebApplications +++ unset GNUSTEP_USER_DIR_WEB_APPS +++ case "$GNUSTEP_USER_DIR_TOOLS" in +++ GNUSTEP_USER_TOOLS=/usr/src/GNUstep/Tools +++ unset GNUSTEP_USER_DIR_TOOLS +++ case "$GNUSTEP_USER_DIR_ADMIN_TOOLS" in +++ GNUSTEP_USER_ADMIN_TOOLS=/usr/src/GNUstep/Tools/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_TOOLS +++ case "$GNUSTEP_USER_DIR_LIBRARY" in +++ GNUSTEP_USER_LIBRARY=/usr/src/GNUstep +++ unset GNUSTEP_USER_DIR_LIBRARY +++ case "$GNUSTEP_USER_DIR_HEADERS" in +++ GNUSTEP_USER_HEADERS=/usr/src/GNUstep/Headers +++ unset GNUSTEP_USER_DIR_HEADERS +++ case "$GNUSTEP_USER_DIR_LIBRARIES" in +++ GNUSTEP_USER_LIBRARIES=/usr/src/GNUstep/Libraries +++ unset GNUSTEP_USER_DIR_LIBRARIES +++ case "$GNUSTEP_USER_DIR_DOC" in +++ GNUSTEP_USER_DOC=/usr/src/GNUstep/Documentation +++ unset GNUSTEP_USER_DIR_DOC +++ case "$GNUSTEP_USER_DIR_DOC_MAN" in +++ GNUSTEP_USER_DOC_MAN=/usr/src/GNUstep/Documentation/man +++ unset GNUSTEP_USER_DIR_DOC_MAN +++ case "$GNUSTEP_USER_DIR_DOC_INFO" in +++ GNUSTEP_USER_DOC_INFO=/usr/src/GNUstep/Documentation/info +++ unset GNUSTEP_USER_DIR_DOC_INFO ++ unset GNUSTEP_HOME ++ fixup_paths=no +++ echo /usr/share/GNUstep/Makefiles +++ sed 's|^[a-zA-Z]:/.*$||' ++ path_check=/usr/share/GNUstep/Makefiles ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ unset path_check ++ '[' no = yes ']' ++ '[' -z /usr:/usr/src/GNUstep ']' +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Tools /usr/bin /usr/bin /usr/bin no ++ GNUSTEP_TOOLS_PATHLIST=/usr/bin:/usr/src/GNUstep/Tools ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/src/GNUstep/Tools/Admin -a -w /usr/src/GNUstep/Tools/Admin ']' ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/bin ++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/bin: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/src/GNUstep/Tools ++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/src/GNUstep/Tools: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_TOOLS_PATHLIST ++ export PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Libraries /usr/lib /usr/lib /usr/lib no ++ GNUSTEP_LIBRARIES_PATHLIST=/usr/lib:/usr/src/GNUstep/Libraries ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/lib ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib: ++ grep -v :/usr/lib: ++ export LD_LIBRARY_PATH ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/src/GNUstep/Libraries ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib: ++ grep -v :/usr/src/GNUstep/Libraries: ++ export LD_LIBRARY_PATH ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARIES_PATHLIST ++ case "$GNUSTEP_HOST_OS" in +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep /usr/lib/GNUstep /usr/lib/GNUstep /usr/lib/GNUstep no ++ GNUSTEP_LIBRARY_PATHLIST=/usr/lib/GNUstep:/usr/src/GNUstep ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/lib/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java ']' ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java: ++ grep -v :/usr/lib/GNUstep/Libraries/Java: ++ path_fragment=/usr/lib/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile: ++ grep -v :/usr/lib/GNUstep/Libraries/Guile: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/src/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java ']' ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java: ++ grep -v :/usr/src/GNUstep/Libraries/Java: ++ path_fragment=/usr/src/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile: ++ grep -v :/usr/src/GNUstep/Libraries/Guile: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARY_PATHLIST ++ export CLASSPATH ++ export GUILE_LOAD_PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Documentation/info /usr/share/info /usr/share/info /usr/share/info no ++ GNUSTEP_INFO_PATHLIST=/usr/share/info:/usr/src/GNUstep/Documentation/info ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/share/info: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/src/GNUstep/Documentation/info: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset GNUSTEP_INFO_PATHLIST ++ export INFOPATH ++ '[' -n '' ']' ++ '[' no = yes ']' ++ unset GNUSTEP_MAKE_STRICT_V2_MODE ++ '[' -z '' ']' ++ unset GNUSTEP_CONFIG_FILE ++ unset GNUSTEP_KEEP_CONFIG_FILE ++ '[' -z '' ']' ++ unset GNUSTEP_USER_CONFIG_FILE ++ unset GNUSTEP_KEEP_USER_CONFIG_FILE ++ unset GNUSTEP_USER_DEFAULTS_DIR ++ unset GNUSTEP_SYSTEM_APPS ++ unset GNUSTEP_SYSTEM_ADMIN_APPS ++ unset GNUSTEP_SYSTEM_WEB_APPS ++ unset GNUSTEP_SYSTEM_TOOLS ++ unset GNUSTEP_SYSTEM_ADMIN_TOOLS ++ unset GNUSTEP_SYSTEM_LIBRARY ++ unset GNUSTEP_SYSTEM_HEADERS ++ unset GNUSTEP_SYSTEM_LIBRARIES ++ unset GNUSTEP_SYSTEM_DOC ++ unset GNUSTEP_SYSTEM_DOC_MAN ++ unset GNUSTEP_SYSTEM_DOC_INFO ++ unset GNUSTEP_NETWORK_APPS ++ unset GNUSTEP_NETWORK_ADMIN_APPS ++ unset GNUSTEP_NETWORK_WEB_APPS ++ unset GNUSTEP_NETWORK_TOOLS ++ unset GNUSTEP_NETWORK_ADMIN_TOOLS ++ unset GNUSTEP_NETWORK_LIBRARY ++ unset GNUSTEP_NETWORK_HEADERS ++ unset GNUSTEP_NETWORK_LIBRARIES ++ unset GNUSTEP_NETWORK_DOC ++ unset GNUSTEP_NETWORK_DOC_MAN ++ unset GNUSTEP_NETWORK_DOC_INFO ++ unset GNUSTEP_LOCAL_APPS ++ unset GNUSTEP_LOCAL_ADMIN_APPS ++ unset GNUSTEP_LOCAL_WEB_APPS ++ unset GNUSTEP_LOCAL_TOOLS ++ unset GNUSTEP_LOCAL_ADMIN_TOOLS ++ unset GNUSTEP_LOCAL_LIBRARY ++ unset GNUSTEP_LOCAL_HEADERS ++ unset GNUSTEP_LOCAL_LIBRARIES ++ unset GNUSTEP_LOCAL_DOC ++ unset GNUSTEP_LOCAL_DOC_MAN ++ unset GNUSTEP_LOCAL_DOC_INFO ++ unset GNUSTEP_USER_APPS ++ unset GNUSTEP_USER_ADMIN_APPS ++ unset GNUSTEP_USER_WEB_APPS ++ unset GNUSTEP_USER_TOOLS ++ unset GNUSTEP_USER_ADMIN_TOOLS ++ unset GNUSTEP_USER_LIBRARY ++ unset GNUSTEP_USER_HEADERS ++ unset GNUSTEP_USER_LIBRARIES ++ unset GNUSTEP_USER_DOC ++ unset GNUSTEP_USER_DOC_MAN ++ unset GNUSTEP_USER_DOC_INFO ++ unset GNUSTEP_SYSTEM_USERS_DIR ++ unset GNUSTEP_LOCAL_USERS_DIR ++ unset GNUSTEP_NETWORK_USERS_DIR ++ '[' -n '' ']' + make 'INSTALL=/bin/install -p' install DESTDIR=/usr/src/tmp/gnustep-BioCocoa-buildroot GNUSTEP_INSTALLATION_DOMAIN=SYSTEM make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' This is gnustep-make 2.6.6. Type 'gmake print-gnustep-make-help' for help. make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' Making build-headers in subprojects of framework BioCocoa... Making build-headers in subprojects of subproject BCFoundation... Making build-headers for subproject BCAlignment... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCAnalysis... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCGeneExpression... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCGeneticCode... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCProteinStructure... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCSequence... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCSequenceIO... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCSymbol... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCTools... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCUtils... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCFoundation... gmake[2]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for framework BioCocoa... Making all in subprojects of framework BioCocoa... Making all in subprojects of subproject BCFoundation... Making all for subproject BCAlignment... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCAnalysis... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCGeneExpression... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCGeneticCode... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCProteinStructure... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCSequence... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCSequenceIO... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCSymbol... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCTools... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCUtils... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCFoundation... gmake[3]: Nothing to be done for 'internal-subproject-compile'. Making all for framework BioCocoa... gmake[2]: Nothing to be done for 'internal-framework-compile'. Copying resources into the framework wrapper... Copying resources from subprojects into the framework wrapper... Making install in subprojects of framework BioCocoa... Making install in subprojects of subproject BCFoundation... Making install for subproject BCAlignment... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCAnalysis... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCGeneExpression... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCGeneticCode... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCProteinStructure... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCSequence... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCSequenceIO... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCSymbol... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCTools... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCUtils... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCFoundation... gmake[2]: Nothing to be done for 'internal-subproject-install'. Making install for framework BioCocoa... Creating /usr/src/tmp/gnustep-BioCocoa-buildroot//usr/lib/GNUstep/Frameworks... Creating /usr/src/tmp/gnustep-BioCocoa-buildroot//usr/include... Installing framework BioCocoa... Installing headers... make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' + pushd /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib ~/tmp/gnustep-BioCocoa-buildroot/usr/lib ~/RPM/BUILD/gnustep-BioCocoa-2.2.2 + for j in BioCocoa + for i in lib$j.so* + rm -f libBioCocoa.so + mv GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so ./ + for k in lib$j.so.*.* + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so + rm GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + for i in lib$j.so* + rm -f libBioCocoa.so.2 + mv GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2 ./ + for k in lib$j.so.*.* + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2 + rm GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + for i in lib$j.so* + rm -f libBioCocoa.so.2.2.2 + mv GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2.2.2 ./ + for k in lib$j.so.*.* + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2.2.2 + rm GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + popd ~/RPM/BUILD/gnustep-BioCocoa-2.2.2 + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/gnustep-BioCocoa-buildroot (auto) mode of './usr/lib/libBioCocoa.so.2.2.2' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) Verifying and fixing files in /usr/src/tmp/gnustep-BioCocoa-buildroot (binconfig,pkgconfig,libtool,desktop) Checking contents of files in /usr/src/tmp/gnustep-BioCocoa-buildroot/ (default) Compressing files in /usr/src/tmp/gnustep-BioCocoa-buildroot (auto) Adjusting library links in /usr/src/tmp/gnustep-BioCocoa-buildroot ./usr/lib: libBioCocoa.so.2 -> libBioCocoa.so.2.2.2 Verifying ELF objects in /usr/src/tmp/gnustep-BioCocoa-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=strict) verify-elf: WARNING: ./usr/lib/libBioCocoa.so.2.2.2: uses non-LFS functions: fgetpos fopen fseeko fsetpos ftello Hardlinking identical .pyc and .pyo files Processing files: gnustep-BioCocoa-2.2.2-alt3 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.82531 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd gnustep-BioCocoa-2.2.2 + DOCDIR=/usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + export DOCDIR + rm -rf /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + /bin/mkdir -p /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + cp -prL ChangeLog Authors.txt Publications.txt Readme.txt license.txt /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + chmod -R go-w /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + chmod -R a+rX /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.l7voAv find-provides: broken symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/BioCocoa -> ./Versions/Current/BioCocoa is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/BioCocoa -> /usr/lib/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so -> /usr/lib/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2 -> /usr/lib/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2 -> /usr/lib/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: broken symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/libBioCocoa.so -> ./Versions/Current/libBioCocoa.so is not going to provide anything find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.jTuvK7 find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) Requires: libgnustep-BioCocoa = 2.2.2-alt3, gnustep-back, /usr/lib/libBioCocoa.so.2.2.2 Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.SRCcIh Processing files: libgnustep-BioCocoa-2.2.2-alt3 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.RSSwqR find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) lib.prov: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/libBioCocoa.so.2: 86 symbols, 17 bpp Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.TMthWH find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) Provides: libBioCocoa.so.2 = set:kdZiyFAWQFi5YFzHqxdrZHOIBCofiteGdzRQZvrTfe6RZgbDcNmhYw2Z0GjkR7iSUZk4euTMZwfJsGTdjN0l296oruBRgYDGt77V8WPkBT8uLFvQp4PTnoGlTrZmikhNdqLPsrqaDA9AkZbOY9dZ0hKmv35mTnslZ9R3yKhRG2bNZa6M22 Requires: libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.2), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libgnustep-base.so.1.24 >= set:oj2p34SjSbHAMwqPopICD53lKzH8gTFWKApioF4rkAn2cgFixCRBGn3lweTTGVMvOSSoHIZjmhEm1Kgv0Uxyl1TschbKp, libobjc2.so.4 >= set:mjyhn17r8TfASjqM4, rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.RZUXqQ Creating libgnustep-BioCocoa-debuginfo package Processing files: libgnustep-BioCocoa-devel-2.2.2-alt3 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.mbP34d find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.shmPvg find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h:107:9: fatal error: BioCocoa/BCGeneExpressionOmnibus.h: No such file or directory #import ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h: cpp failed, trying c++ mode i586-alt-linux-cpp: error trying to exec 'cc1plus': execvp: No such file or directory cpp.req: WARNING: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h: cpp failed /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h:33:9: fatal error: BCAlignment.h: No such file or directory #import "BCAlignment.h" ^~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h: cpp failed /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h:36:9: fatal error: BCInternal.h: No such file or directory #import "BCInternal.h" ^~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h: cpp failed Provides: gnustep-BioCocoa-devel = 2.2.2-alt3 Requires: gnustep-BioCocoa = 2.2.2-alt3, libgnustep-BioCocoa = 2.2.2-alt3, /usr/lib/libBioCocoa.so.2, gnustep-base-devel Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.FJlg1K Processing files: libgnustep-BioCocoa-debuginfo-2.2.2-alt3 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.tuqj5z find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.YQnwWD find-requires: running scripts (debuginfo) Provides: debug(libBioCocoa.so.2) Requires: libgnustep-BioCocoa = 2.2.2-alt3, debug(libc.so.6), debug(libgnustep-base.so.1.24), debug(libobjc2.so.4) Removing 1 extra deps from gnustep-BioCocoa due to dependency on libgnustep-BioCocoa Removing 1 extra deps from libgnustep-BioCocoa-devel due to dependency on libgnustep-BioCocoa Removing 1 extra deps from libgnustep-BioCocoa-devel due to repentancy on gnustep-BioCocoa Wrote: /usr/src/RPM/RPMS/i586/gnustep-BioCocoa-2.2.2-alt3.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/libgnustep-BioCocoa-2.2.2-alt3.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/libgnustep-BioCocoa-devel-2.2.2-alt3.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/libgnustep-BioCocoa-debuginfo-2.2.2-alt3.i586.rpm 25.58user 5.89system 0:53.51elapsed 58%CPU (0avgtext+0avgdata 46256maxresident)k 0inputs+0outputs (0major+2185629minor)pagefaults 0swaps 48.99user 9.36system 1:34.95elapsed 61%CPU (0avgtext+0avgdata 116764maxresident)k 10016inputs+0outputs (0major+2674066minor)pagefaults 0swaps --- libgnustep-BioCocoa-2.2.2-alt3.i586.rpm.repo 2014-02-14 00:43:46.000000000 +0000 +++ libgnustep-BioCocoa-2.2.2-alt3.i586.rpm.hasher 2019-06-28 11:36:02.157808968 +0000 @@ -7,9 +7,10 @@ Requires: libc.so.6(GLIBC_2.3) -Requires: libgnustep-base.so.1.24 >= set:qluHxuuPoZfxdDPjB2QIKgkWLAJdiVh1t16M5IG2shQZuFMuyizRJ3aI4rkhuxAVtlwed9yNSZw8B1pzQS5IMQYB8ihvNmTQbD5Tc0 +Requires: libc.so.6(GLIBC_2.3.4) +Requires: libc.so.6(GLIBC_2.4) +Requires: libgnustep-base.so.1.24 >= set:oj2p34SjSbHAMwqPopICD53lKzH8gTFWKApioF4rkAn2cgFixCRBGn3lweTTGVMvOSSoHIZjmhEm1Kgv0Uxyl1TschbKp Requires: rpmlib(SetVersions) -Requires: libobjc2.so.4 >= set:mjGI24FIybqZDZs5UZG23 -Requires: libpthread.so.0 +Requires: libobjc2.so.4 >= set:mjyhn17r8TfASjqM4 Requires: rtld(GNU_HASH) Requires: rpmlib(PayloadIsLzma) -Provides: libBioCocoa.so.2 = set: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 +Provides: libBioCocoa.so.2 = set:kdZiyFAWQFi5YFzHqxdrZHOIBCofiteGdzRQZvrTfe6RZgbDcNmhYw2Z0GjkR7iSUZk4euTMZwfJsGTdjN0l296oruBRgYDGt77V8WPkBT8uLFvQp4PTnoGlTrZmikhNdqLPsrqaDA9AkZbOY9dZ0hKmv35mTnslZ9R3yKhRG2bNZa6M22 Provides: libgnustep-BioCocoa = 2.2.2-alt3 --- libgnustep-BioCocoa-debuginfo-2.2.2-alt3.i586.rpm.repo 2014-02-14 00:43:46.000000000 +0000 +++ libgnustep-BioCocoa-debuginfo-2.2.2-alt3.i586.rpm.hasher 2019-06-28 11:36:02.652812843 +0000 @@ -32,6 +32,4 @@ /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCCodonRNA.m 100644 -/usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCGeneticCode.h 100644 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCGeneticCode.m 100644 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCInternal.h 100644 -/usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCPreferences.h 100644 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCPreferences.m 100644 @@ -68,2 +66,3 @@ /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO/BCSequenceWriter.m 100644 +/usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCStringDefinitions.h 100644 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCStringDefinitions.m 100644 @@ -112,3 +111,2 @@ Requires: debug(libobjc2.so.4) -Requires: debug(libpthread.so.0) Requires: rpmlib(PayloadIsLzma)