<86>Dec 24 08:45:20 userdel[65475]: delete user 'rooter' <86>Dec 24 08:45:20 userdel[65475]: removed group 'rooter' owned by 'rooter' <86>Dec 24 08:45:20 userdel[65475]: removed shadow group 'rooter' owned by 'rooter' <86>Dec 24 08:45:20 groupadd[65536]: group added to /etc/group: name=rooter, GID=633 <86>Dec 24 08:45:20 groupadd[65536]: group added to /etc/gshadow: name=rooter <86>Dec 24 08:45:20 groupadd[65536]: new group: name=rooter, GID=633 <86>Dec 24 08:45:20 useradd[65555]: new user: name=rooter, UID=633, GID=633, home=/root, shell=/bin/bash <86>Dec 24 08:45:20 userdel[65596]: delete user 'builder' <86>Dec 24 08:45:20 userdel[65596]: removed group 'builder' owned by 'builder' <86>Dec 24 08:45:20 userdel[65596]: removed shadow group 'builder' owned by 'builder' <86>Dec 24 08:45:20 groupadd[65620]: group added to /etc/group: name=builder, GID=634 <86>Dec 24 08:45:20 groupadd[65620]: group added to /etc/gshadow: name=builder <86>Dec 24 08:45:20 groupadd[65620]: new group: name=builder, GID=634 <86>Dec 24 08:45:20 useradd[65637]: new user: name=builder, UID=634, GID=634, home=/usr/src, shell=/bin/bash warning: Macro %_altdir not found warning: Macro %_altdir not found warning: Macro %_altdir not found warning: Macro %_altdir not found warning: Macro %_altdir not found <13>Dec 24 08:45:23 rpmi: libquadmath0-8.2.1-alt1 sisyphus.214000.20 1542662379 installed <13>Dec 24 08:45:23 rpmi: libidn2-2.0.5-alt1 1526923875 installed <13>Dec 24 08:45:23 rpmi: udev-rules-1:239-alt3 sisyphus.215710.300 1540765573 installed <13>Dec 24 08:45:23 rpmi: libkmod-25-alt1 1522318408 installed <13>Dec 24 08:45:23 rpmi: kmod-25-alt1 1522318408 installed <13>Dec 24 08:45:24 rpmi: libgfortran4-7.3.1-alt7 sisyphus.214000.100 1542667145 installed <13>Dec 24 08:45:24 rpmi: libnuma-2.0.11-alt1 1450022594 installed <13>Dec 24 08:45:24 rpmi: libmnl-1.0.4-alt1 1480571791 installed <13>Dec 24 08:45:24 rpmi: gcc-fortran-common-1.4.23-alt1 sisyphus.218115.200 1545282875 installed <13>Dec 24 08:45:24 rpmi: liblz4-1:1.8.3-alt1 sisyphus.213737.100 1538009686 installed <13>Dec 24 08:45:24 rpmi: libiptables-1.4.21-alt3 1435789455 installed <13>Dec 24 08:45:24 rpmi: msulogin-1.0-alt1 1366288515 installed <13>Dec 24 08:45:24 rpmi: mount-2.32-alt2 1528296111 installed <13>Dec 24 08:45:24 rpmi: libdevmapper-1.02.152-alt2 sisyphus.216915.100 1543418921 installed <13>Dec 24 08:45:24 rpmi: sysvinit-2.88-alt5 1424350686 installed <13>Dec 24 08:45:24 rpmi: libnetlink-4.18.0-alt1 1534194784 installed <13>Dec 24 08:45:24 rpmi: libnuma-devel-2.0.11-alt1 1450022594 installed <13>Dec 24 08:45:24 rpmi: libgfortran5-8.2.1-alt1 sisyphus.214000.20 1542662379 installed <13>Dec 24 08:45:24 rpmi: libquadmath8-devel-8.2.1-alt1 sisyphus.214000.20 1542662379 installed <13>Dec 24 08:45:24 rpmi: libgfortran8-devel-8.2.1-alt1 sisyphus.214000.20 1542662379 installed <13>Dec 24 08:45:24 rpmi: gcc8-fortran-8.2.1-alt1 sisyphus.214000.20 1542662379 installed <13>Dec 24 08:45:24 rpmi: gcc-fortran-8-alt1 sisyphus.214000.40 1542664775 installed <13>Dec 24 08:45:25 rpmi: libgfortran3-6.3.1-alt3.1 sisyphus.213581.600 1538069672 installed <13>Dec 24 08:45:25 rpmi: libquadmath7-devel-7.3.1-alt7 sisyphus.214000.100 1542667145 installed <13>Dec 24 08:45:25 rpmi: libgfortran7-devel-7.3.1-alt7 sisyphus.214000.100 1542667145 installed <13>Dec 24 08:45:25 rpmi: tex-common-0.2-alt4 1244804096 installed <13>Dec 24 08:45:25 rpmi: texi2dvi-6.5-alt1.1 1520363044 installed <13>Dec 24 08:45:25 rpmi: perl-Unicode-Normalize-1:5.26.2-alt2 1534850821 installed <13>Dec 24 08:45:25 rpmi: perl-Unicode-EastAsianWidth-1.40-alt1 sisyphus.217785.100 1544703272 installed <13>Dec 24 08:45:25 rpmi: perl-Text-Unidecode-1.30-alt1 1480505027 installed <13>Dec 24 08:45:25 rpmi: perl-Pod-Escapes-1.07-alt1 1418767892 installed <13>Dec 24 08:45:25 rpmi: perl-Filter-1.59-alt1 1533737242 installed <13>Dec 24 08:45:25 rpmi: perl-Encode-2.98-alt1 1525447819 installed <13>Dec 24 08:45:25 rpmi: perl-libintl-1.31-alt1 sisyphus.216662.100 1542744839 installed <13>Dec 24 08:45:25 rpmi: perl-Pod-Simple-3.35-alt1 1482098090 installed <13>Dec 24 08:45:25 rpmi: makeinfo-6.5-alt1.1 1520363044 installed <13>Dec 24 08:45:25 rpmi: zlib-devel-1.2.11-alt1 sisyphus.217171.100 1543710737 installed <13>Dec 24 08:45:25 rpmi: libibumad-20.1-alt1 sisyphus.215851.40 1541165555 installed <13>Dec 24 08:45:25 rpmi: libpci-3.6.2-alt1.S1 sisyphus.213446.100 1537513661 installed <13>Dec 24 08:45:25 rpmi: pciids-20181217-alt1 sisyphus.218010.100 1545105873 installed <13>Dec 24 08:45:25 rpmi: pciutils-3.6.2-alt1.S1 sisyphus.213446.100 1537513661 installed <13>Dec 24 08:45:25 rpmi: libsz2-2.1-alt4 1300649104 installed <13>Dec 24 08:45:25 rpmi: libnl3-3.4.0-alt2 1507570088 installed <13>Dec 24 08:45:25 rpmi: libibverbs-20.1-alt1 sisyphus.215851.40 1541165555 installed <13>Dec 24 08:45:25 rpmi: librdmacm-20.1-alt1 sisyphus.215851.40 1541165555 installed <13>Dec 24 08:45:25 rpmi: tcsh-6.20.00-alt2 1503603381 installed <13>Dec 24 08:45:25 rpmi: rpm-macros-mpi-selector-1.0.3-alt3 1504498675 installed <13>Dec 24 08:45:25 rpmi: mpi-selector-1.0.3-alt3 1504498675 installed <13>Dec 24 08:45:25 rpmi: openmpi-2.0.1-alt7 sisyphus.216567.400 1543514645 installed <13>Dec 24 08:45:25 rpmi: libpnetcdf-1.8.1-alt1 1505818731 installed <13>Dec 24 08:45:25 rpmi: libexpat-2.2.4-alt1 1503305345 installed <13>Dec 24 08:45:25 rpmi: publicsuffix-list-dafsa-20181106-alt1 sisyphus.216228.100 1541611754 installed <13>Dec 24 08:45:25 rpmi: libnghttp2-1.34.0-alt1 sisyphus.214524.100 1539249634 installed <13>Dec 24 08:45:25 rpmi: libverto-0.3.0-alt1_5 1525957714 installed <13>Dec 24 08:45:25 rpmi: libkeyutils-1.6-alt2 sisyphus.217337.100 1544003161 installed <13>Dec 24 08:45:25 rpmi: libcom_err-1.44.3-alt1 1532134732 installed <13>Dec 24 08:45:25 rpmi: libbrotlicommon-1.0.7-alt1 sisyphus.215491.100 1540428597 installed <13>Dec 24 08:45:25 rpmi: libbrotlidec-1.0.7-alt1 sisyphus.215491.100 1540428597 installed <13>Dec 24 08:45:25 rpmi: libatm-2.5.1-alt4 1349943444 installed <13>Dec 24 08:45:25 rpmi: chrooted-0.3.9-alt1 1524554183 installed <13>Dec 24 08:45:25 rpmi: chrooted-resolv-0.3.1-alt2 1176155250 installed <13>Dec 24 08:45:25 rpmi: gcc-c++-common-1.4.23-alt1 sisyphus.218115.200 1545282875 installed <13>Dec 24 08:45:26 rpmi: libstdc++8-devel-8.2.1-alt1 sisyphus.214000.20 1542662379 installed <13>Dec 24 08:45:27 rpmi: gcc8-c++-8.2.1-alt1 sisyphus.214000.20 1542662379 installed <13>Dec 24 08:45:27 rpmi: gcc-c++-8-alt1 sisyphus.214000.40 1542664775 installed <13>Dec 24 08:45:27 rpmi: libseccomp-2.3.3-alt1.S1.1 1525143458 installed <13>Dec 24 08:45:27 rpmi: libpcre2-10.32-alt1 sisyphus.212994.100 1536866761 installed <13>Dec 24 08:45:27 rpmi: libjson-c-0.12.1-alt2 1517446106 installed <13>Dec 24 08:45:27 rpmi: libargon2-20171227-alt2 sisyphus.216770.100 1542965282 installed <13>Dec 24 08:45:27 rpmi: libgpg-error-1.31-alt1.S1 1529015802 installed <13>Dec 24 08:45:27 rpmi: libgcrypt20-1.8.3-alt4 sisyphus.218050.200 1545223289 installed <13>Dec 24 08:45:27 rpmi: libsystemd-1:239-alt3 sisyphus.215710.300 1540765641 installed <13>Dec 24 08:45:27 rpmi: libcryptsetup-2.0.6-alt1 sisyphus.217248.100 1543864717 installed <13>Dec 24 08:45:27 rpmi: hwclock-1:2.32-alt2 1528296111 installed <13>Dec 24 08:45:27 rpmi: startup-0.9.9.6-alt1 sisyphus.215964.200 1542884274 installed <13>Dec 24 08:45:27 rpmi: systemd-utils-1:239-alt3 sisyphus.215710.300 1540765641 installed <13>Dec 24 08:45:27 rpmi: udev-hwdb-1:239-alt3 sisyphus.215710.300 1540765573 installed <13>Dec 24 08:45:27 rpmi: hashalot-0.3-alt1.qa1 1366323553 installed <13>Dec 24 08:45:27 rpmi: losetup-2.32-alt2 1528296111 installed <13>Dec 24 08:45:27 rpmi: lsblk-2.32-alt2 1528296111 installed <13>Dec 24 08:45:27 rpmi: dmsetup-1.02.152-alt2 sisyphus.216915.100 1543418921 installed <86>Dec 24 08:45:27 groupadd[109323]: group added to /etc/group: name=tape, GID=499 <86>Dec 24 08:45:27 groupadd[109323]: group added to /etc/gshadow: name=tape <86>Dec 24 08:45:27 groupadd[109323]: new group: name=tape, GID=499 <86>Dec 24 08:45:27 groupadd[109345]: group added to /etc/group: name=dialout, GID=498 <86>Dec 24 08:45:27 groupadd[109345]: group added to /etc/gshadow: name=dialout <86>Dec 24 08:45:27 groupadd[109345]: new group: name=dialout, GID=498 <86>Dec 24 08:45:27 groupadd[109368]: group added to /etc/group: name=input, GID=497 <86>Dec 24 08:45:27 groupadd[109368]: group added to /etc/gshadow: name=input <86>Dec 24 08:45:27 groupadd[109368]: new group: name=input, GID=497 <86>Dec 24 08:45:27 groupadd[109396]: group added to /etc/group: name=video, GID=496 <86>Dec 24 08:45:27 groupadd[109396]: group added to /etc/gshadow: name=video <86>Dec 24 08:45:27 groupadd[109396]: new group: name=video, GID=496 <86>Dec 24 08:45:27 groupadd[109415]: group added to /etc/group: name=render, GID=495 <86>Dec 24 08:45:27 groupadd[109415]: group added to /etc/gshadow: name=render <86>Dec 24 08:45:27 groupadd[109415]: new group: name=render, GID=495 <13>Dec 24 08:45:27 rpmi: udev-1:239-alt3 sisyphus.215710.300 1540765641 installed <13>Dec 24 08:45:27 rpmi: libtasn1-4.13-alt2 1521133850 installed <13>Dec 24 08:45:27 rpmi: libp11-kit-0.23.9-alt5 1525798298 installed <13>Dec 24 08:45:27 rpmi: bc-1:1.07.1-alt1 sisyphus.218158.200 1545308145 installed <13>Dec 24 08:45:27 rpmi: ed-1:0.2-alt10 1449768440 installed <13>Dec 24 08:45:27 rpmi: rpm-macros-alternatives-0.4.5-alt1.1 1404382149 installed <13>Dec 24 08:45:27 rpmi: alternatives-0.4.5-alt1.1 1404382149 installed <13>Dec 24 08:45:27 rpmi: libhdf5-8-mpi-1.8.13-alt4 1533048438 installed <13>Dec 24 08:45:27 rpmi: ca-certificates-2018.11.12-alt1 sisyphus.216395.300 1542114035 installed <13>Dec 24 08:45:27 rpmi: ca-trust-0.1.1-alt2 1515595785 installed <13>Dec 24 08:45:27 rpmi: p11-kit-trust-0.23.9-alt5 1525798298 installed <13>Dec 24 08:45:27 rpmi: libcrypto1.1-1.1.0j-alt1 sisyphus.216647.100 1542743878 installed <13>Dec 24 08:45:27 rpmi: libssl1.1-1.1.0j-alt1 sisyphus.216647.100 1542743878 installed <86>Dec 24 08:45:27 groupadd[110992]: group added to /etc/group: name=_keytab, GID=494 <86>Dec 24 08:45:27 groupadd[110992]: group added to /etc/gshadow: name=_keytab <86>Dec 24 08:45:27 groupadd[110992]: new group: name=_keytab, GID=494 <13>Dec 24 08:45:28 rpmi: libkrb5-1.16.2-alt2 sisyphus.216877.200 1543483297 installed <86>Dec 24 08:45:28 groupadd[111297]: group added to /etc/group: name=sasl, GID=493 <86>Dec 24 08:45:28 groupadd[111297]: group added to /etc/gshadow: name=sasl <86>Dec 24 08:45:28 groupadd[111297]: new group: name=sasl, GID=493 <13>Dec 24 08:45:28 rpmi: libsasl2-3-2.1.27-alt0.2 1535660695 installed <13>Dec 24 08:45:28 rpmi: libldap-2.4.46-alt1 1535562135 installed <13>Dec 24 08:45:28 rpmi: libcurl-7.63.0-alt1 sisyphus.217831.100 1544762811 installed <13>Dec 24 08:45:28 rpmi: libnetcdf11-mpi-4.4.1.1-alt2 1505818960 installed <86>Dec 24 08:45:28 groupadd[111720]: group added to /etc/group: name=iputils, GID=492 <86>Dec 24 08:45:28 groupadd[111720]: group added to /etc/gshadow: name=iputils <86>Dec 24 08:45:28 groupadd[111720]: new group: name=iputils, GID=492 <86>Dec 24 08:45:28 useradd[111734]: new user: name=iputils, UID=499, GID=492, home=/dev/null, shell=/dev/null <86>Dec 24 08:45:28 groupadd[111750]: group added to /etc/group: name=netadmin, GID=491 <86>Dec 24 08:45:28 groupadd[111750]: group added to /etc/gshadow: name=netadmin <86>Dec 24 08:45:28 groupadd[111750]: new group: name=netadmin, GID=491 <13>Dec 24 08:45:28 rpmi: iputils-20180629-alt1 1535650704 installed sysctl: cannot stat /proc/sys/net/ipv4/ping_group_range: No such file or directory <13>Dec 24 08:45:28 rpmi: iproute2-4.18.0-alt1 1534194784 installed <13>Dec 24 08:45:28 rpmi: rdma-core-20.1-alt1 sisyphus.215851.40 1541165555 installed <13>Dec 24 08:45:28 rpmi: ibacm-20.1-alt1 sisyphus.215851.40 1541165555 installed <13>Dec 24 08:45:28 rpmi: rdma-core-devel-20.1-alt1 sisyphus.215851.40 1541165555 installed <13>Dec 24 08:45:28 rpmi: openmpi-devel-2.0.1-alt7 sisyphus.216567.400 1543514645 installed <13>Dec 24 08:45:28 rpmi: libhdf5-mpi-devel-1.8.13-alt4 1533048438 installed <13>Dec 24 08:45:28 rpmi: libnetcdf-mpi-devel-4.4.1.1-alt2 1505818960 installed <13>Dec 24 08:45:28 rpmi: libcurl-devel-7.63.0-alt1 sisyphus.217831.100 1544762811 installed <13>Dec 24 08:45:28 rpmi: libexpat-devel-2.2.4-alt1 1503305345 installed <13>Dec 24 08:45:28 rpmi: texinfo-6.5-alt1.1 1520363044 installed <13>Dec 24 08:45:28 rpmi: flex-2.6.0-alt1 1449073223 installed Building target platforms: i586 Building for target i586 Wrote: /usr/src/in/nosrpm/libnetcdf_c++-4-mpi-4.2-alt4.nosrc.rpm Installing libnetcdf_c++-4-mpi-4.2-alt4.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.36216 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf libnetcdf_c++-4-mpi-4.2 + echo 'Source #0 (libnetcdf_c++-4-mpi-4.2.tar):' Source #0 (libnetcdf_c++-4-mpi-4.2.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/libnetcdf_c++-4-mpi-4.2.tar + cd libnetcdf_c++-4-mpi-4.2 + /bin/chmod -c -Rf u+rwX,go-w . + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.36216 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd libnetcdf_c++-4-mpi-4.2 + mpi-selector --set openmpi + source /usr/lib/openmpi/bin/mpivars.sh ++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ grep -q /usr/lib/openmpi/bin ++ PATH=/usr/lib/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ export PATH ++ echo ++ grep -q /usr/lib/openmpi/lib ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ echo ++ grep -q /usr/lib/openmpi/man ++ MANPATH=/usr/lib/openmpi/man: ++ export MANPATH + export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib' + OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib' + autoreconf -fisv autoreconf-default: Entering directory `.' autoreconf-default: configure.ac: not using Gettext autoreconf-default: running: aclocal --force -I m4 configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5428: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:816: _LT_LANG is expanded from... m4/libtool.m4:799: LT_LANG is expanded from... m4/libtool.m4:827: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5428: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:816: _LT_LANG is expanded from... m4/libtool.m4:799: LT_LANG is expanded from... m4/libtool.m4:827: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level autoreconf-default: configure.ac: tracing configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4211: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5343: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level configure.ac:95: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1084: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5428: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:816: _LT_LANG is expanded from... m4/libtool.m4:799: LT_LANG is expanded from... m4/libtool.m4:827: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:143: _LT_SETUP is expanded from... m4/libtool.m4:69: LT_INIT is expanded from... configure.ac:95: the top level autoreconf-default: running: libtoolize --force --install libtoolize-default: putting auxiliary files in `.'. libtoolize-default: linking file `./config.guess' libtoolize-default: linking file `./config.sub' libtoolize-default: linking file `./install-sh' libtoolize-default: linking file `./ltmain.sh' libtoolize-default: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize-default: linking file `m4/libtool.m4' libtoolize-default: linking file `m4/ltoptions.m4' libtoolize-default: linking file `m4/ltsugar.m4' libtoolize-default: linking file `m4/ltversion.m4' libtoolize-default: linking file `m4/lt~obsolete.m4' autoreconf-default: configure.ac: not using Intltool autoreconf-default: configure.ac: not using gtk-doc autoreconf-default: running: /usr/bin/autoconf-2.60 --force autoreconf-default: running: /usr/bin/autoheader-2.60 --force autoreconf-default: running: automake --add-missing --force-missing configure.ac:33: warning: support for distribution archives compressed with legacy program 'compress' is deprecated. configure.ac:33: It will be removed in Automake 2.0 configure.ac:95: installing './compile' parallel-tests: installing './test-driver' autoreconf-default: Leaving directory `.' + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export CFLAGS + CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export CXXFLAGS + FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' + export FFLAGS + '[' -n '' ']' ++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC' ++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g' + ASFLAGS=' -march=i586 -mtune=generic' + export ASFLAGS + export lt_cv_deplibs_check_method=pass_all + lt_cv_deplibs_check_method=pass_all + readlink -e -- ./configure + xargs -ri dirname -- '{}' + xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n' + sort -u + xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess + ./configure --build=i586-alt-linux --host=i586-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --without-included-gettext --enable-shared --enable-static=no --bindir=/usr/lib/openmpi/bin --libdir=/usr/lib/openmpi/lib --includedir=/usr/lib/openmpi/include configure: WARNING: unrecognized options: --without-included-gettext configure: netCDF-cxx 4.2 checking build system type... i586-alt-linux-gnu checking host system type... i586-alt-linux-gnu checking target system type... i586-alt-linux-gnu checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes configure: checking user options checking whether extra valgrind tests should be run... no checking whether netCDF extra tests should be run (developers only)... no checking whether large file (> 2GB) tests should be run... no checking where to put large temp files if large file tests are run... . configure: finding C++ compiler (will not be used if C++ API is not desired) checking for i586-alt-linux-g++... i586-alt-linux-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether i586-alt-linux-g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of i586-alt-linux-g++... none configure: setting up libtool checking how to print strings... printf checking for i586-alt-linux-gcc... i586-alt-linux-gcc checking whether we are using the GNU C compiler... yes checking whether i586-alt-linux-gcc accepts -g... yes checking for i586-alt-linux-gcc option to accept ISO C89... none needed checking whether i586-alt-linux-gcc understands -c and -o together... yes checking dependency style of i586-alt-linux-gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by i586-alt-linux-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-alt-linux-gnu file names to i586-alt-linux-gnu format... func_convert_file_noop checking how to convert i586-alt-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for i586-alt-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... (cached) pass_all checking for i586-alt-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i586-alt-linux-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for i586-alt-linux-strip... no checking for strip... strip checking for i586-alt-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from i586-alt-linux-gcc object... ok checking for sysroot... no checking for i586-alt-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... i586-alt-linux-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if i586-alt-linux-gcc supports -fno-rtti -fno-exceptions... no checking for i586-alt-linux-gcc option to produce PIC... -fPIC -DPIC checking if i586-alt-linux-gcc PIC flag -fPIC -DPIC works... yes checking if i586-alt-linux-gcc static flag -static works... no checking if i586-alt-linux-gcc supports -c -o file.o... yes checking if i586-alt-linux-gcc supports -c -o file.o... (cached) yes checking whether the i586-alt-linux-gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... i586-alt-linux-g++ -E checking for ld used by i586-alt-linux-g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the i586-alt-linux-g++ linker (/usr/bin/ld) supports shared libraries... yes checking for i586-alt-linux-g++ option to produce PIC... -fPIC -DPIC checking if i586-alt-linux-g++ PIC flag -fPIC -DPIC works... yes checking if i586-alt-linux-g++ static flag -static works... no checking if i586-alt-linux-g++ supports -c -o file.o... yes checking if i586-alt-linux-g++ supports -c -o file.o... (cached) yes checking whether the i586-alt-linux-g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: finding other utilities checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking netcdf.h usability... yes checking netcdf.h presence... no configure: WARNING: netcdf.h: accepted by the compiler, rejected by the preprocessor! configure: WARNING: netcdf.h: proceeding with the compiler's result checking for netcdf.h... yes checking for library containing nc_open... -lnetcdf checking for nc_def_opaque... yes checking for nccreate... yes checking for nc_set_log_level... no checking for nc_use_parallel_enabled... yes configure: generating header files and makefiles checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating man4/Makefile config.status: creating cxx/Makefile config.status: creating examples/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --without-included-gettext + make -j8 make all-recursive Making all in cxx make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' /bin/sh ../libtool --tag=CXX --mode=compile i586-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o libnetcdf_c___la-ncvalues.lo `test -f 'ncvalues.cpp' || echo './'`ncvalues.cpp libtool: compile: i586-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c ncvalues.cpp -fPIC -DPIC -o .libs/libnetcdf_c___la-ncvalues.o make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' /bin/sh ../libtool --tag=CXX --mode=compile i586-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c -o libnetcdf_c___la-netcdf.lo `test -f 'netcdf.cpp' || echo './'`netcdf.cpp libtool: compile: i586-alt-linux-g++ -DHAVE_CONFIG_H -I. -I.. -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -c netcdf.cpp -fPIC -DPIC -o .libs/libnetcdf_c___la-netcdf.o netcdf.cpp: In member function 'int NcVar::num_atts() const': netcdf.cpp:650:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (the_file->is_valid()) ^ make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' /bin/sh ../libtool --tag=CXX --mode=link i586-alt-linux-g++ -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/netcdf -fno-strict-aliasing -fPIC -DPIC -version-number 4:2:0 -o libnetcdf_c++.la -rpath /usr/lib/openmpi/lib libnetcdf_c___la-netcdf.lo libnetcdf_c___la-ncvalues.lo -lnetcdf libtool: link: i586-alt-linux-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i586-alt-linux/8/../../../crti.o /usr/lib/gcc/i586-alt-linux/8/crtbeginS.o .libs/libnetcdf_c___la-netcdf.o .libs/libnetcdf_c___la-ncvalues.o -lnetcdf -L/usr/lib/gcc/i586-alt-linux/8 -L/usr/lib/gcc/i586-alt-linux/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i586-alt-linux/8/crtendS.o /usr/lib/gcc/i586-alt-linux/8/../../../crtn.o -O2 -march=i586 -mtune=generic -Wl,-soname -Wl,libnetcdf_c++.so.4 -o .libs/libnetcdf_c++.so.4.2.0 libtool: link: (cd ".libs" && rm -f "libnetcdf_c++.so.4" && ln -s "libnetcdf_c++.so.4.2.0" "libnetcdf_c++.so.4") libtool: link: (cd ".libs" && rm -f "libnetcdf_c++.so" && ln -s "libnetcdf_c++.so.4.2.0" "libnetcdf_c++.so") libtool: link: ( cd ".libs" && rm -f "libnetcdf_c++.la" && ln -s "../libnetcdf_c++.la" "libnetcdf_c++.la" ) make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' Making all in examples make[2]: Nothing to be done for 'all'. Making all in man4 make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' Updating ./version-cxx.texi make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.81714 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot + : + /bin/rm -rf -- /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot + cd libnetcdf_c++-4-mpi-4.2 + source /usr/lib/openmpi/bin/mpivars.sh ++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ grep -q /usr/lib/openmpi/bin ++ PATH=/usr/lib/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ export PATH ++ echo ++ grep -q /usr/lib/openmpi/lib ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ echo ++ grep -q /usr/lib/openmpi/man ++ MANPATH=/usr/lib/openmpi/man: ++ export MANPATH + export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib' + OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib' + make 'INSTALL=/bin/install -p' install DESTDIR=/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot make: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' Making install in cxx make[1]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' /bin/mkdir -p '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/lib' /bin/sh ../libtool --mode=install /bin/install -p libnetcdf_c++.la '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/lib' libtool: install: /bin/install -p .libs/libnetcdf_c++.so.4.2.0 /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/lib/libnetcdf_c++.so.4.2.0 libtool: install: (cd /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/lib && { ln -s -f libnetcdf_c++.so.4.2.0 libnetcdf_c++.so.4 || { rm -f libnetcdf_c++.so.4 && ln -s libnetcdf_c++.so.4.2.0 libnetcdf_c++.so.4; }; }) libtool: install: (cd /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/lib && { ln -s -f libnetcdf_c++.so.4.2.0 libnetcdf_c++.so || { rm -f libnetcdf_c++.so && ln -s libnetcdf_c++.so.4.2.0 libnetcdf_c++.so; }; }) libtool: install: /bin/install -p .libs/libnetcdf_c++.lai /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/lib/libnetcdf_c++.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openmpi/lib' /bin/mkdir -p '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/include' /bin/install -p -m 644 netcdfcpp.h ncvalues.h netcdf.hh '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/include' make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' make[1]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/cxx' Making install in examples make[1]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' make[1]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/examples' Making install in man4 make[1]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (/bin/sh /usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/missing makeinfo --version) >/dev/null 2>&1; then \ for f in netcdf-cxx.info netcdf-cxx.info-[0-9] netcdf-cxx.info-[0-9][0-9] netcdf-cxx.i[0-9] netcdf-cxx.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if /bin/sh /usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/missing makeinfo -I . \ -o netcdf-cxx.info netcdf-cxx.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./netcdf-cxx.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc netcdf-cxx.texi:8: warning: @setcontentsaftertitlepage is obsolete; move your @contents command if you want the contents after the title page ./defines.texi:86: warning: multiple @setchapternewpage make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' make[2]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/info' /bin/install -p -m 644 ./netcdf-cxx.info '/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/info' make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' make[1]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2/man4' make[1]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[2]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[2]: Nothing to be done for 'install-exec-am'. make install-data-hook make[3]: Entering directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' +-------------------------------------------------------------+ | Congratulations! You have successfully installed the netCDF | | C++ Libaray | | | | CAUTION: | | | | If you have not already run "make check", then we strongly | | recommend you do so. It does not take very long. | | | | Before using netCDF to store important data, test your | | build with "make check". | | | | NetCDF is tested nightly on many platforms at Unidata | | but your platform is probably different in some ways. | | | | If any tests fail, please see the netCDF web site: | | http://www.unidata.ucar.edu/software/netcdf/ | | | | NetCDF is developed and maintained at the Unidata Program | | Center. Unidata provides a broad array of data and software | | tools for use in geoscience education and research. | | http://www.unidata.ucar.edu | +-------------------------------------------------------------+ make[3]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[2]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make[1]: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' make: Leaving directory '/usr/src/RPM/BUILD/libnetcdf_c++-4-mpi-4.2' + install -d /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/include/netcdf + mv /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/include/ncvalues.h /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/include/netcdf.hh /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/include/netcdfcpp.h /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/include/netcdf/ + rm -f /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/lib/libnetcdf_c++.la + install -d /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/etc/alternatives/packages.d + mkdir -p /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib + pushd /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/lib ~/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/lib ~/RPM/BUILD/libnetcdf_c++-4-mpi-4.2 + for i in libnetcdf_c++.so.* + ln -s ../../usr/lib/openmpi/lib/libnetcdf_c++.so.4 /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/ + echo '/usr/lib/libnetcdf_c++.so.4 /usr/lib/openmpi/lib/libnetcdf_c++.so.4 30' + for i in libnetcdf_c++.so.* + ln -s ../../usr/lib/openmpi/lib/libnetcdf_c++.so.4.2.0 /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/ + echo '/usr/lib/libnetcdf_c++.so.4.2.0 /usr/lib/openmpi/lib/libnetcdf_c++.so.4.2.0 30' ++ ls libnetcdf_c++.so + for i in $(ls *.so) + echo '/usr/lib/libnetcdf_c++.so /usr/lib/openmpi/lib/libnetcdf_c++.so 30' + popd ~/RPM/BUILD/libnetcdf_c++-4-mpi-4.2 + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (auto) mode of './usr/lib/openmpi/lib/libnetcdf_c++.so.4.2.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) Verifying and fixing files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (binconfig,pkgconfig,libtool,desktop) Checking contents of files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/ (default) Compressing files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (auto) Verifying info files in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/info (normal) Adjusting library links in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot ./usr/lib: ./usr/lib/openmpi/lib: libnetcdf_c++.so.4 -> libnetcdf_c++.so.4.2.0 Verifying ELF objects in /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) Hardlinking identical .pyc and .pyo files Processing files: libnetcdf_c++-4-mpi-4.2-alt4 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.77091 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd libnetcdf_c++-4-mpi-4.2 + DOCDIR=/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + export DOCDIR + rm -rf /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + /bin/mkdir -p /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + cp -prL COPYRIGHT /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + chmod -R go-w /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + chmod -R a+rX /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-4.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Ynl5BB find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) warning: hash collision: _ZN13NcValues_longC1ERKS_ _ZN5NcVar3putEPKllllll warning: hash collision: _ZN13NcValues_longC1ElPKl _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.jgNKiv find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) ++ /bin/sed -e '/^debug.*(libnetcdf\.so.*/s/^/libnetcdf11-mpi-debuginfo\t/' Provides: libnetcdf_c++-mpi = 4.2-alt4, libnetcdf_c++-4-mpi = 4.2-alt4, /usr/lib/libnetcdf_c++.so.4 = 30, /usr/lib/libnetcdf_c++.so.4.2.0 = 30, libnetcdf_c++.so.4 = set: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 Requires: libhdf5-8-mpi, libnetcdf11-mpi, /etc/alternatives/packages.d, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.4), libgcc_s.so.1(GCC_3.0), libnetcdf.so.11 >= set:oitpZH0nFmdtO6DUe5cR2i5WHqrmak4Z29VKNABIkQOKpVZ2GUvgXAeJRbmn4GGhQZ6dr3o2FldfilfTZk3kiqAQIID0L6bECbWHsxaIUaOMkSb11wtwDYWwrZFARMrxUX4cC5sBEZhQ5qkCuct8N00ZcHcjYHDAeJpg7GSTiC2, libstdc++.so.6(CXXABI_1.3), libstdc++.so.6(CXXABI_1.3.8), libstdc++.so.6(CXXABI_1.3.9), libstdc++.so.6(GLIBCXX_3.4), libstdc++.so.6(GLIBCXX_3.4.11), libstdc++.so.6(GLIBCXX_3.4.21), libstdc++.so.6(GLIBCXX_3.4.9), rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Requires(post): alternatives Requires(preun): alternatives Conflicts: libnetcdf_c++ < 4.0.1-alt6, libnetcdf_c++-4-mpi < 4.2-alt4 Obsoletes: libnetcdf_c++-4-mpi < 4.2-alt4 Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.8DyeiH Creating libnetcdf_c++-4-mpi-debuginfo package Processing files: libnetcdf_c++-mpi-devel-4.2-alt4 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.6FYzts find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.cRPwyP find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) In file included from /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/include/netcdf/netcdfcpp.h:13, from /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/include/netcdf/netcdf.hh:1: /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/include/netcdf/ncvalues.h:13:10: fatal error: iostream: No such file or directory #include ^~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/lib/openmpi/include/netcdf/netcdf.hh: cpp failed, trying c++ mode ++ /bin/sed -e '/^debug.*(libnetcdf\.so.*/s/^/libnetcdf11-mpi-debuginfo\t/' Provides: /usr/lib/libnetcdf_c++.so = 30 Requires: libnetcdf_c++-4-mpi = 4.2-alt4, libnetcdf-mpi-devel, /etc/alternatives/packages.d, /usr/lib/openmpi/lib/libnetcdf_c++.so.4.2.0 Requires(post): alternatives Requires(preun): alternatives Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.l3mlYU Processing files: libnetcdf_c++-4-mpi-doc-4.2-alt4 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.32624 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd libnetcdf_c++-4-mpi-4.2 + DOCDIR=/usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + export DOCDIR + rm -rf /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + /bin/mkdir -p /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + cp -prL man4/netcdf-cxx.html man4/netcdf-cxx.pdf examples /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + chmod -R go-w /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + chmod -R a+rX /usr/src/tmp/libnetcdf_c++-4-mpi-buildroot/usr/share/doc/libnetcdf_c++-4-mpi-doc-4.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.D8oJsY find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Qidk6i find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks) Conflicts: libnetcdf_c++-4-seq-doc Processing files: libnetcdf_c++-4-mpi-debuginfo-4.2-alt4 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.eEIH08 find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.82zoEg find-requires: running scripts (debuginfo) ++ /bin/sed -e '/^debug.*(libnetcdf\.so.*/s/^/libnetcdf11-mpi-debuginfo\t/' --- find-requires-deps 2018-12-24 08:46:17.464986364 +0000 +++ filter-requires-deps 2018-12-24 08:46:17.469986377 +0000 @@ -2,3 +2,3 @@ debug(libgcc_s.so.1) -debug(libnetcdf.so.11) +libnetcdf11-mpi-debuginfo debug(libnetcdf.so.11) debug(libstdc++.so.6) Provides: debug(libnetcdf_c++.so.4) Requires: libnetcdf_c++-4-mpi = 4.2-alt4, debug(libc.so.6), debug(libgcc_s.so.1), libnetcdf11-mpi-debuginfo, debug(libnetcdf.so.11), debug(libstdc++.so.6) Removing 1 extra deps from libnetcdf_c++-mpi-devel due to dependency on libnetcdf_c++-4-mpi Removing 2 extra deps from libnetcdf_c++-mpi-devel due to repentancy on libnetcdf_c++-4-mpi Wrote: /usr/src/RPM/RPMS/i586/libnetcdf_c++-4-mpi-4.2-alt4.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/libnetcdf_c++-mpi-devel-4.2-alt4.i586.rpm Wrote: /usr/src/RPM/RPMS/noarch/libnetcdf_c++-4-mpi-doc-4.2-alt4.noarch.rpm Wrote: /usr/src/RPM/RPMS/i586/libnetcdf_c++-4-mpi-debuginfo-4.2-alt4.i586.rpm 17.59user 2.29system 0:42.66elapsed 46%CPU (0avgtext+0avgdata 62888maxresident)k 0inputs+0outputs (0major+1139590minor)pagefaults 0swaps 31.40user 5.88system 1:06.61elapsed 55%CPU (0avgtext+0avgdata 121452maxresident)k 72544inputs+0outputs (0major+1791702minor)pagefaults 0swaps