<86>Dec 12 07:18:47 userdel[42527]: delete user 'rooter'
<86>Dec 12 07:18:47 groupadd[42662]: group added to /etc/group: name=rooter, GID=684
<86>Dec 12 07:18:47 groupadd[42662]: new group: name=rooter, GID=684
<86>Dec 12 07:18:47 useradd[42732]: new user: name=rooter, UID=684, GID=684, home=/root, shell=/bin/bash
<86>Dec 12 07:18:48 userdel[42813]: delete user 'builder'
<86>Dec 12 07:18:48 groupadd[43156]: group added to /etc/group: name=builder, GID=685
<86>Dec 12 07:18:48 groupadd[43156]: group added to /etc/gshadow: name=builder
<86>Dec 12 07:18:48 groupadd[43156]: new group: name=builder, GID=685
<86>Dec 12 07:18:48 useradd[43293]: new user: name=builder, UID=685, GID=685, home=/usr/src, shell=/bin/bash
warning: user glebfm does not exist - using root
warning: group glebfm does not exist - using root
warning: user glebfm does not exist - using root
warning: group glebfm does not exist - using root
warning: user glebfm does not exist - using root
warning: group glebfm does not exist - using root
warning: user glebfm does not exist - using root
warning: group glebfm does not exist - using root
<13>Dec 12 07:18:52 rpmi: libglvnd-7:1.1.0-alt3 sisyphus.215982.100 1541498632 installed
<13>Dec 12 07:18:52 rpmi: libexpat-2.2.4-alt1 1503305345 installed
<13>Dec 12 07:18:52 rpmi: xorg-proto-devel-2018.4-alt3 1527685079 installed
<13>Dec 12 07:18:52 rpmi: libwayland-server-1.16.0-alt1 1535614871 installed
<13>Dec 12 07:18:52 rpmi: libOpenGL-7:1.1.0-alt3 sisyphus.215982.100 1541498632 installed
<13>Dec 12 07:18:52 rpmi: libGLES-7:1.1.0-alt3 sisyphus.215982.100 1541498632 installed
<13>Dec 12 07:18:52 rpmi: libtinfo-devel-6.1.20180407-alt2 sisyphus.215627.200 1540831974 installed
<13>Dec 12 07:18:52 rpmi: libncurses-devel-6.1.20180407-alt2 sisyphus.215627.200 1540831974 installed
<13>Dec 12 07:18:52 rpmi: libgdbm-1.8.3-alt10 1454943334 installed
<13>Dec 12 07:18:52 rpmi: libpng15-1.5.28-alt2 1497966749 installed
<13>Dec 12 07:18:52 rpmi: libjpeg-2:1.5.1-alt1 1498218318 installed
<13>Dec 12 07:18:52 rpmi: libpng16-1.6.35-alt1 sisyphus.214397.100 1539159349 installed
<13>Dec 12 07:18:52 rpmi: libgraphite2-1.3.12-alt2.1 sisyphus.215942.100 1540990757 installed
<13>Dec 12 07:18:52 rpmi: libharfbuzz-2.1.3-alt1 sisyphus.216837.100 1543085735 installed
<13>Dec 12 07:18:52 rpmi: libfreetype-2.9.1-alt1.S1 1530781053 installed
<13>Dec 12 07:18:52 rpmi: fontconfig-2.13.1-alt1 sisyphus.215917.100 1540973886 installed
Updating fonts cache: [ DONE ]
<29>Dec 12 07:18:54 fontconfig: Updating fonts cache: succeeded
<13>Dec 12 07:18:54 rpmi: libxshmfence-1.2-alt2 1518613552 installed
<13>Dec 12 07:18:54 rpmi: libX11-locales-3:1.6.7-alt1 sisyphus.214413.200 1539171080 installed
<13>Dec 12 07:18:54 rpmi: libXdmcp-1.1.1-alt1 1334617701 installed
<13>Dec 12 07:18:54 rpmi: libXau-1.0.8-alt1 1369565808 installed
<13>Dec 12 07:18:54 rpmi: libxcb-1.13.1-alt1 sisyphus.214413.100 1539170896 installed
<13>Dec 12 07:18:54 rpmi: libX11-3:1.6.7-alt1 sisyphus.214413.200 1539171143 installed
<13>Dec 12 07:18:54 rpmi: libXext-1.3.3-alt1 1409902959 installed
<13>Dec 12 07:18:54 rpmi: libXfixes-5.0.3-alt1 sisyphus.216396.300 1542022162 installed
<13>Dec 12 07:18:54 rpmi: libXrender-0.9.8-alt1 1371312112 installed
<13>Dec 12 07:18:54 rpmi: libXcursor-1.1.15-alt1.S1 1512373366 installed
<13>Dec 12 07:18:54 rpmi: libXft-2.3.2-alt1 1409902660 installed
<13>Dec 12 07:18:54 rpmi: libXxf86vm-1.1.4-alt2 1527672187 installed
<13>Dec 12 07:18:54 rpmi: libXinerama-1.1.3-alt2 1527671619 installed
<13>Dec 12 07:18:54 rpmi: libXdamage-1.1.3-alt4 1297162593 installed
<13>Dec 12 07:18:56 rpmi: libxcb-devel-1.13.1-alt1 sisyphus.214413.100 1539170896 installed
<13>Dec 12 07:18:56 rpmi: libX11-devel-3:1.6.7-alt1 sisyphus.214413.200 1539171143 installed
<13>Dec 12 07:18:56 rpmi: libwayland-client-1.16.0-alt1 1535614871 installed
<13>Dec 12 07:18:56 rpmi: libpciaccess-1:0.14-alt1 1528969252 installed
<13>Dec 12 07:18:56 rpmi: libdrm-1:2.4.96-alt1 sisyphus.215486.100 1540374027 installed
<13>Dec 12 07:18:56 rpmi: libGLX-mesa-4:18.3.0-alt1 sisyphus.217579.100 1544438821 installed
<13>Dec 12 07:18:56 rpmi: libGLX-7:1.1.0-alt3 sisyphus.215982.100 1541498632 installed
<13>Dec 12 07:18:56 rpmi: libGL-7:1.1.0-alt3 sisyphus.215982.100 1541498632 installed
<13>Dec 12 07:18:56 rpmi: libGLU-4:9.0.0-alt1 1347643784 installed
<13>Dec 12 07:18:56 rpmi: libfltk13-1.3.3-alt2 1487804054 installed
<13>Dec 12 07:18:56 rpmi: libgbm-4:18.3.0-alt1 sisyphus.217579.100 1544438821 installed
<13>Dec 12 07:18:56 rpmi: libEGL-mesa-4:18.3.0-alt1 sisyphus.217579.100 1544438821 installed
<13>Dec 12 07:18:56 rpmi: libEGL-7:1.1.0-alt3 sisyphus.215982.100 1541498632 installed
<13>Dec 12 07:18:56 rpmi: libglvnd-devel-7:1.1.0-alt3 sisyphus.215982.100 1541498632 installed
<13>Dec 12 07:18:57 rpmi: libEGL-devel-4:18.3.0-alt1 sisyphus.217579.100 1544438821 installed
<13>Dec 12 07:18:57 rpmi: libGL-devel-4:18.3.0-alt1 sisyphus.217579.100 1544438821 installed
<13>Dec 12 07:18:57 rpmi: libGLU-devel-4:9.0.0-alt1 1347643784 installed
<13>Dec 12 07:18:57 rpmi: gcc-c++-common-1.4.22-alt1 1519183788 installed
<13>Dec 12 07:18:57 rpmi: libstdc++8-devel-8.2.1-alt1 sisyphus.214000.20 1542662379 installed
<13>Dec 12 07:18:58 rpmi: gcc8-c++-8.2.1-alt1 sisyphus.214000.20 1542662379 installed
<13>Dec 12 07:18:58 rpmi: libtasn1-4.13-alt2 1521133850 installed
<13>Dec 12 07:18:58 rpmi: libp11-kit-0.23.9-alt5 1525798298 installed
<13>Dec 12 07:18:58 rpmi: rpm-macros-alternatives-0.4.5-alt1.1 1404382149 installed
<13>Dec 12 07:18:58 rpmi: alternatives-0.4.5-alt1.1 1404382149 installed
<13>Dec 12 07:18:58 rpmi: ca-certificates-2018.11.12-alt1 sisyphus.216395.300 1542114035 installed
<13>Dec 12 07:18:58 rpmi: ca-trust-0.1.1-alt2 1515595785 installed
<13>Dec 12 07:18:58 rpmi: p11-kit-trust-0.23.9-alt5 1525798298 installed
<13>Dec 12 07:18:58 rpmi: libcrypto1.1-1.1.0j-alt1 sisyphus.216647.100 1542743878 installed
<13>Dec 12 07:18:58 rpmi: libssl1.1-1.1.0j-alt1 sisyphus.216647.100 1542743878 installed
<13>Dec 12 07:18:58 rpmi: rpm-build-python3-0.1.13.1-alt2 1535450458 installed
<13>Dec 12 07:18:58 rpmi: tests-for-installed-python3-pkgs-0.1.13.1-alt2 1535450458 installed
<13>Dec 12 07:18:58 rpmi: python3-3.6.5-alt1.1 1535734576 installed
<13>Dec 12 07:18:59 rpmi: python3-base-3.6.5-alt1.1 1535734576 installed
<13>Dec 12 07:18:59 rpmi: libpython3-3.6.5-alt1.1 1535734576 installed
<13>Dec 12 07:18:59 rpmi: python3-dev-3.6.5-alt1.1 1535734576 installed
<13>Dec 12 07:18:59 rpmi: gcc-c++-8-alt1 sisyphus.214000.40 1542664775 installed
<13>Dec 12 07:18:59 rpmi: libfltk-devel-1.3.3-alt2 1487804054 installed
<13>Dec 12 07:18:59 rpmi: zlib-devel-1.2.11-alt1 sisyphus.217171.100 1543710737 installed
Building target platforms: i586
Building for target i586
Wrote: /usr/src/in/nosrpm/seaview-4.6-alt1.nosrc.rpm
Installing seaview-4.6-alt1.src.rpm
Building target platforms: i586
Building for target i586
Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.32172
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ rm -rf seaview
+ echo 'Source #0 (seaview_4.6.tar.gz):'
Source #0 (seaview_4.6.tar.gz):
+ /bin/tar -xf -
+ /bin/gzip -dc /usr/src/RPM/SOURCES/seaview_4.6.tar.gz
+ cd seaview
+ /bin/chmod -c -Rf u+rwX,go-w .
+ echo 'Patch #0 (no-interactive.patch):'
Patch #0 (no-interactive.patch):
+ /usr/bin/patch -p1
patching file trees.cxx
+ chmod -x addbootstrap.cxx align.cxx comlines.cxx concatenate.cxx custom.cxx least_squares_brl.cxx load_seq.cxx nexus.cxx pdf_or_ps.cxx pseudoterminal.cxx racnuc_fetch.cxx regions.cxx resource.cxx seaview.cxx statistics.cxx svg.cxx threads.cxx treedraw.cxx trees.cxx unrooted.cxx use_mase_files.cxx viewasprots.cxx win32_extras.cxx xfmatpt.cxx
+ chmod -x csrc/bionj.c csrc/dnapars.c csrc/lwl.c csrc/md5.c csrc/misc_acnuc.c csrc/parser.c csrc/parser.h csrc/phylip.c csrc/phylip.h csrc/phyml_util.c csrc/phyml_util.h csrc/protpars.c csrc/raa_acnuc.c csrc/raa_acnuc.h csrc/seq.c csrc/seq.h csrc/zsockr.c
+ sed -i 's|^\(CFLAGS.*\)|\1 -g -DFL_LIBRARY|' Makefile
+ exit 0
Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.43173
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd seaview
+ make -j8
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF custom.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF comlines.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF resource.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF regions.cxx
regions.cxx: In function 'int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)':
regions.cxx:305:9: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(cmd);
~~~~~~^~~~~
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF viewasprots.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF racnuc_fetch.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF align.cxx
align.cxx: In function 'void replace_stars(char*)':
align.cxx:1298:7: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(all, 1, l, in);
~~~~~^~~~~~~~~~~~~~~
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF concatenate.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF load_seq.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF nexus.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF statistics.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF xfmatpt.cxx
xfmatpt.cxx:208:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
Fl_Widget *postscript = cre_button(fin, curr_y, &width, but_height, fontsize, "Write "PDF_OR_PS);
^
xfmatpt.cxx:873:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
fl_message("Dot plot is now in file\n%s\nin "PDF_OR_PS" format", surface->outfname());
^
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF least_squares_brl.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF pdf_or_ps.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF pseudoterminal.cxx
pseudoterminal.cxx: In function 'int run_external_prog_in_pseudoterm(char*, const char*, const char*)':
pseudoterminal.cxx:342:11: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
freopen(dialogfname, "r", stdin);
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
pseudoterminal.cxx:344:10: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
freopen(slavename, "a", stderr);
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF threads.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF trees.cxx
trees.cxx: In function 'void run_phyml_callback(Fl_Widget*, void*)':
trees.cxx:1234:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(bootstrap_trees, l, 1, in);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
trees.cxx: In function 'void command_line_phylogeny(int, char**)':
trees.cxx:2691:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(utree, s, 1, in);
~~~~~^~~~~~~~~~~~~~~~~
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -I. -Dunix -O3 -I. -Icsrc -DNO_PDF FL/Fl_Native_File_Chooser_FLTK.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF use_mase_files.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
gcc -c -O3 -Dunix -Icsrc csrc/md5.c
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
gcc -c -O3 -Dunix -Icsrc csrc/parser.c
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF svg.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
gcc -c -O3 -Dunix -Icsrc csrc/zsockr.c
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
gcc -c -O3 -Dunix -Icsrc csrc/misc_acnuc.c
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF addbootstrap.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
gcc -c -O3 -Dunix -Icsrc csrc/dnapars.c
csrc/dnapars.c: In function 'dnapars':
csrc/dnapars.c:1685:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(tree, L, 1, outtree);
^~~~~~~~~~~~~~~~~~~~~~~~~~
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
gcc -c -O3 -Dunix -Icsrc csrc/raa_acnuc.c
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
gcc -c -O3 -Dunix -Icsrc csrc/bionj.c
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF treedraw.cxx
treedraw.cxx:213:6: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
{"Save as "PDF_OR_PS"", 0, file_callback, NULL, 0},
^
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
gcc -c -O3 -Dunix -Icsrc csrc/lwl.c
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
gcc -c -O3 -Dunix -Icsrc csrc/phyml_util.c
csrc/phyml_util.c: In function 'Warn_And_Exit':
csrc/phyml_util.c:47:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf(stdin,"%c",&c);
^~~~~~~~~~~~~~~~~~~~~
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF seaview.cxx
seaview.cxx:3317:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
strcat(suggested, "."PDF_OR_PS_EXT);
^
seaview.cxx:3427:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
pdf_form->label("Set "PDF_OR_PS" output options");
^
seaview.cxx:5003:6: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
{"Prepare "PDF_OR_PS"", 0, file_menu_callback, 0, 0},
^
seaview.cxx:5004:6: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
{""PDF_OR_PS" options...", 0, file_menu_callback, 0, FL_MENU_DIVIDER},
^
seaview.cxx: In function 'void delete_tmp_filename(const char*)':
seaview.cxx:638:9: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system(fname);
~~~~~~^~~~~~~
seaview.cxx: In function 'char* run_and_close_native_file_chooser(Fl_Native_File_Chooser*, int)':
seaview.cxx:2876:38: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result [-Wunused-result]
if( *last_visited_directory )chdir(last_visited_directory);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -c -Dunix -O3 -I. -Icsrc -DNO_PDF unrooted.cxx
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
gcc -c -O3 -Dunix -Icsrc csrc/phylip.c
In file included from /usr/include/stdio.h:862,
from csrc/phylip.c:32:
In function 'fgets',
inlined from 'getstryng' at csrc/phylip.c:236:11,
inlined from 'readlong' at csrc/phylip.c:467:5:
/usr/include/bits/stdio2.h:260:9: warning: call to '__fgets_chk_warn' declared with attribute warning: fgets called with bigger size than length of destination buffer
return __fgets_chk_warn (__s, __bos (__s), __n, __stream);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'fgets',
inlined from 'getstryng' at csrc/phylip.c:236:11,
inlined from 'initcategs' at csrc/phylip.c:603:5:
/usr/include/bits/stdio2.h:260:9: warning: call to '__fgets_chk_warn' declared with attribute warning: fgets called with bigger size than length of destination buffer
return __fgets_chk_warn (__s, __bos (__s), __n, __stream);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'fgets',
inlined from 'getstryng' at csrc/phylip.c:236:11,
inlined from 'initprobcat' at csrc/phylip.c:634:5:
/usr/include/bits/stdio2.h:260:9: warning: call to '__fgets_chk_warn' declared with attribute warning: fgets called with bigger size than length of destination buffer
return __fgets_chk_warn (__s, __bos (__s), __n, __stream);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'fgets',
inlined from 'getstryng' at csrc/phylip.c:236:11,
inlined from 'initfreqs' at csrc/phylip.c:1021:5:
/usr/include/bits/stdio2.h:260:9: warning: call to '__fgets_chk_warn' declared with attribute warning: fgets called with bigger size than length of destination buffer
return __fgets_chk_warn (__s, __bos (__s), __n, __stream);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'fgets',
inlined from 'getstryng' at csrc/phylip.c:236:11,
inlined from 'readlong' at csrc/phylip.c:467:5,
inlined from 'initnumlines' at csrc/phylip.c:1126:20:
/usr/include/bits/stdio2.h:260:9: warning: call to '__fgets_chk_warn' declared with attribute warning: fgets called with bigger size than length of destination buffer
return __fgets_chk_warn (__s, __bos (__s), __n, __stream);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
gcc -c -O3 -Dunix -Icsrc csrc/protpars.c
csrc/protpars.c: In function 'protpars':
csrc/protpars.c:2097:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(tree, L, 1, outtree);
^~~~~~~~~~~~~~~~~~~~~~~~~~
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
gcc -c -O3 -Dunix -Icsrc csrc/seq.c
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
make: Entering directory '/usr/src/RPM/BUILD/seaview'
g++ -o seaview seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o Fl_Native_File_Chooser_FLTK.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -ldl -lpthread -lz
make: Leaving directory '/usr/src/RPM/BUILD/seaview'
+ exit 0
Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.80700
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ /bin/chmod -Rf u+rwX -- /usr/src/tmp/seaview-buildroot
+ :
+ /bin/rm -rf -- /usr/src/tmp/seaview-buildroot
+ cd seaview
+ mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/seaview
+ mkdir -p /usr/src/tmp/seaview-buildroot/usr/bin
+ mkdir -p /usr/src/tmp/seaview-buildroot//usr/share/man/man1
+ mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/applications/
+ install -m 755 seaview /usr/src/tmp/seaview-buildroot//usr/bin
+ install -m 644 seaview.html /usr/src/tmp/seaview-buildroot/usr/share/seaview/
+ install -m 644 /usr/src/RPM/SOURCES/seaview.desktop /usr/src/tmp/seaview-buildroot/usr/share/applications/
+ mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/pixmaps/
+ install -m 0644 -p seaview.xpm /usr/src/tmp/seaview-buildroot/usr/share/pixmaps/seaview.xpm
+ install -m 644 seaview.1 /usr/src/tmp/seaview-buildroot//usr/share/man/man1
+ /usr/lib/rpm/brp-alt
Cleaning files in /usr/src/tmp/seaview-buildroot (auto)
Verifying and fixing files in /usr/src/tmp/seaview-buildroot (binconfig,pkgconfig,libtool,desktop)
/usr/share/applications/seaview.desktop: performed minor cleanup:
6c6
< Icon=seaview.xpm
---
> Icon=seaview
Checking contents of files in /usr/src/tmp/seaview-buildroot/ (default)
Compressing files in /usr/src/tmp/seaview-buildroot (auto)
Verifying ELF objects in /usr/src/tmp/seaview-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal)
verify-elf: WARNING: ./usr/bin/seaview: uses non-LFS functions: fgetpos fopen freopen fsetpos mkstemp open
Hardlinking identical .pyc and .opt-?.pyc files
Hardlinking identical .pyc and .pyo files
Executing(%check): /bin/sh -e /usr/src/tmp/rpm-tmp.4553
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd seaview
+ exit 0
Processing files: seaview-4.6-alt1
Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.23563
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd seaview
+ DOCDIR=/usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-4.6
+ export DOCDIR
+ rm -rf /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-4.6
+ /bin/mkdir -p /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-4.6
+ cp -prL seaview.1.xml example.nxs /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-4.6
+ chmod -R go-w /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-4.6
+ chmod -R a+rX /usr/src/tmp/seaview-buildroot/usr/share/doc/seaview-4.6
+ exit 0
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.LEpsIj
find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,python3,shell)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.NeBOax
find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks)
Requires: /lib/ld-linux.so.2, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.11), libc.so.6(GLIBC_2.15), libc.so.6(GLIBC_2.2), libc.so.6(GLIBC_2.2.1), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libc.so.6(GLIBC_2.7), libfltk.so.2 >= set: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, libfltk_images.so.2 >= set:jfWg1JaebIlCT0Tk9Z0EM7, libgcc_s.so.1(GCC_3.0), libm.so.6(GLIBC_2.0), libm.so.6(GLIBC_2.1), libpthread.so.0(GLIBC_2.0), libpthread.so.0(GLIBC_2.1), libstdc++.so.6(CXXABI_1.3), libstdc++.so.6(CXXABI_1.3.8), libstdc++.so.6(CXXABI_1.3.9), libstdc++.so.6(GLIBCXX_3.4), libz.so.1 >= set:kic1428UZj1, rtld(GNU_HASH)
Requires(rpmlib): rpmlib(SetVersions)
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.0XXgBQ
Creating seaview-debuginfo package
Processing files: seaview-debuginfo-4.6-alt1
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.VsUaUf
find-provides: running scripts (debuginfo)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.K1wYFK
find-requires: running scripts (debuginfo)
Requires: seaview = 4.6-alt1, /usr/lib/debug/lib/ld-linux.so.2.debug, debug(libc.so.6), debug(libfltk.so.2), debug(libfltk_images.so.2), debug(libgcc_s.so.1), debug(libm.so.6), debug(libpthread.so.0), debug(libstdc++.so.6), debug(libz.so.1)
Wrote: /usr/src/RPM/RPMS/i586/seaview-4.6-alt1.i586.rpm
Wrote: /usr/src/RPM/RPMS/i586/seaview-debuginfo-4.6-alt1.i586.rpm
34.66user 1.47system 0:33.47elapsed 107%CPU (0avgtext+0avgdata 59812maxresident)k
0inputs+0outputs (0major+570506minor)pagefaults 0swaps
47.72user 4.55system 0:58.77elapsed 88%CPU (0avgtext+0avgdata 122580maxresident)k
0inputs+0outputs (0major+1024725minor)pagefaults 0swaps
--- seaview-4.6-alt1.i586.rpm.repo 2016-04-27 09:29:18.000000000 +0000
+++ seaview-4.6-alt1.i586.rpm.hasher 2018-12-12 07:19:38.787768262 +0000
@@ -21,3 +21,3 @@
Requires: libc.so.6(GLIBC_2.7)
-Requires: libfltk.so.2 >= set: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
+Requires: libfltk.so.2 >= set: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
Requires: rpmlib(SetVersions)
@@ -30,2 +30,4 @@
Requires: libstdc++.so.6(CXXABI_1.3)
+Requires: libstdc++.so.6(CXXABI_1.3.8)
+Requires: libstdc++.so.6(CXXABI_1.3.9)
Requires: libstdc++.so.6(GLIBCXX_3.4)