<86>Dec 19 04:46:07 userdel[395552]: delete user 'rooter' <86>Dec 19 04:46:07 userdel[395552]: removed group 'rooter' owned by 'rooter' <86>Dec 19 04:46:07 userdel[395552]: removed shadow group 'rooter' owned by 'rooter' <86>Dec 19 04:46:07 groupadd[395577]: group added to /etc/group: name=rooter, GID=1847 <86>Dec 19 04:46:07 groupadd[395577]: group added to /etc/gshadow: name=rooter <86>Dec 19 04:46:07 groupadd[395577]: new group: name=rooter, GID=1847 <86>Dec 19 04:46:07 useradd[395597]: new user: name=rooter, UID=1847, GID=1847, home=/root, shell=/bin/bash, from=none <86>Dec 19 04:46:07 userdel[395619]: delete user 'builder' <86>Dec 19 04:46:07 userdel[395619]: removed group 'builder' owned by 'builder' <86>Dec 19 04:46:07 userdel[395619]: removed shadow group 'builder' owned by 'builder' <86>Dec 19 04:46:07 groupadd[395637]: group added to /etc/group: name=builder, GID=1848 <86>Dec 19 04:46:07 groupadd[395637]: group added to /etc/gshadow: name=builder <86>Dec 19 04:46:07 groupadd[395637]: new group: name=builder, GID=1848 <86>Dec 19 04:46:07 useradd[395659]: new user: name=builder, UID=1848, GID=1848, home=/usr/src, shell=/bin/bash, from=none warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root <13>Dec 19 04:46:11 rpmi: xorg-proto-devel-2024.1-alt1 sisyphus+343583.40.1.1 1711440649 installed <13>Dec 19 04:46:11 rpmi: libXau-1.0.11-alt1 sisyphus+311428.100.1.1 1670577439 installed <13>Dec 19 04:46:11 rpmi: libCVector-1.0.3.1-alt2 1316809894 installed <13>Dec 19 04:46:11 rpmi: libquadmath0-14.2.1-alt1 sisyphus+360995.100.1.1 1730131018 installed <13>Dec 19 04:46:11 rpmi: libgfortran5-14.2.1-alt1 sisyphus+360995.100.1.1 1730131018 installed <13>Dec 19 04:46:11 rpmi: libCBFlib-0.9.2.3-alt3 sisyphus+269998.200.2.1 1618495151 installed <13>Dec 19 04:46:11 rpmi: libquadmath14-devel-14.2.1-alt1 sisyphus+360995.100.1.1 1730131018 installed <13>Dec 19 04:46:11 rpmi: libCVector-devel-1.0.3.1-alt2 1316809894 installed <13>Dec 19 04:46:11 rpmi: libNearTree-5.1.1-alt1 sisyphus+220437.100.1.1 1549115239 installed <13>Dec 19 04:46:11 rpmi: libXau-devel-1.0.11-alt1 sisyphus+311428.100.1.1 1670577439 installed <13>Dec 19 04:46:11 rpmi: gcc-fortran-common-1.4.28-alt1 sisyphus+348678.100.1.1 1716396142 installed <13>Dec 19 04:46:11 rpmi: libgfortran14-devel-14.2.1-alt1 sisyphus+360995.100.1.1 1730131018 installed <13>Dec 19 04:46:11 rpmi: libX11-locales-3:1.8.10-alt1 sisyphus+353866.100.1.1 1722240771 installed <13>Dec 19 04:46:11 rpmi: libXdmcp-1.1.5-alt1 sisyphus+343583.700.1.1 1711441061 installed <13>Dec 19 04:46:11 rpmi: libxcb-1.17.0-alt1 sisyphus+345308.200.1.1 1713342004 installed <13>Dec 19 04:46:11 rpmi: libX11-3:1.8.10-alt1 sisyphus+353866.100.1.1 1722240771 installed <13>Dec 19 04:46:11 rpmi: libXext-1.3.6-alt1 sisyphus+343583.1000.1.1 1711441101 installed <13>Dec 19 04:46:11 rpmi: libXi-1.8-alt1 sisyphus+285490.200.1.1 1632124174 installed <13>Dec 19 04:46:11 rpmi: libXfixes-6.0.1-alt1 sisyphus+331490.300.1.1 1697023233 installed <13>Dec 19 04:46:12 rpmi: libxcb-devel-1.17.0-alt1 sisyphus+345308.200.1.1 1713342004 installed <13>Dec 19 04:46:12 rpmi: libX11-devel-3:1.8.10-alt1 sisyphus+353866.100.1.1 1722240771 installed <13>Dec 19 04:46:12 rpmi: libXext-devel-1.3.6-alt1 sisyphus+343583.1000.1.1 1711441101 installed <13>Dec 19 04:46:12 rpmi: libXfixes-devel-6.0.1-alt1 sisyphus+331490.300.1.1 1697023233 installed <13>Dec 19 04:46:12 rpmi: libCQRlib-1.1.2-alt2 1316809842 installed <13>Dec 19 04:46:12 rpmi: libCQRlib-devel-1.1.2-alt2 1316809842 installed <13>Dec 19 04:46:12 rpmi: libXi-devel-1.8-alt1 sisyphus+285490.200.1.1 1632124174 installed <13>Dec 19 04:46:12 rpmi: libgfortran-devel-14-alt1 sisyphus+360995.300.1.1 1730139222 installed <13>Dec 19 04:46:12 rpmi: libNearTree-devel-5.1.1-alt1 sisyphus+220437.100.1.1 1549115239 installed <13>Dec 19 04:46:12 rpmi: libCBFlib-devel-0.9.2.3-alt3 sisyphus+269998.200.2.1 1618495151 installed <13>Dec 19 04:46:12 rpmi: xorg-cf-files-1.0.7-alt3 sisyphus+299066.100.1.1 1650986799 installed <13>Dec 19 04:46:12 rpmi: imake-1.0.8-alt1 sisyphus+346312.200.2.1 1716446983 installed Building target platforms: x86_64 Building for target x86_64 Wrote: /usr/src/in/nosrpm/RasMol-2.7.5.2-alt7.nosrc.rpm (w1.gzdio) Installing RasMol-2.7.5.2-alt7.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.61502 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf RasMol-2.7.5.2 + echo 'Source #0 (rasmol-2.7.5.2-13May11.tar.gz):' Source #0 (rasmol-2.7.5.2-13May11.tar.gz): + /usr/bin/gzip -dc /usr/src/RPM/SOURCES/rasmol-2.7.5.2-13May11.tar.gz + /bin/tar -xf - + cd RasMol-2.7.5.2 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #0 (RasMol-2.7.5-gentoo-bundled-lib.patch):' Patch #0 (RasMol-2.7.5-gentoo-bundled-lib.patch): + /usr/bin/patch -p1 patching file src/Imakefile patching file src/Makefile.in + sed -i 's,^#include \(<\|"\)cbf,#include \1cbf/cbf,' src/cif.h src/maps.c + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.61502 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd RasMol-2.7.5.2 + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto' + pushd src ~/RPM/BUILD/RasMol-2.7.5.2/src ~/RPM/BUILD/RasMol-2.7.5.2 + xmkmf imake -DUseInstalled -I/usr/share/X11/config In file included from /usr/share/X11/config/Imake.tmpl:110, from Imakefile.c:34: /usr/share/X11/config/linux.cf:198: warning: "XAppLoadDir" redefined 198 | # define XAppLoadDir /usr/share/X11/app-defaults In file included from /usr/share/X11/config/site.def:45, from /usr/share/X11/config/Imake.tmpl:47: /usr/share/X11/config/host.def:29: note: this is the location of the previous definition 29 | #define XAppLoadDir /etc/X11/app-defaults In file included from /usr/share/X11/config/site.def:155, from /usr/share/X11/config/Imake.tmpl:116: /usr/share/X11/config/host.def:29: warning: "XAppLoadDir" redefined 29 | #define XAppLoadDir /etc/X11/app-defaults /usr/share/X11/config/linux.cf:198: note: this is the location of the previous definition 198 | # define XAppLoadDir /usr/share/X11/app-defaults In file included from /usr/share/X11/config/Imake.tmpl:2147: /usr/share/X11/config/X11.rules:39: warning: "XBinDir" redefined 39 | # define XBinDir $(XPROJECTROOT)/bin /usr/share/X11/config/host.def:14: note: this is the location of the previous definition 14 | #define XBinDir /usr/bin /usr/share/X11/config/X11.rules:47: warning: "XUsrLibDirPath" redefined 47 | # define XUsrLibDirPath $(USRLIBDIR):$(XPROJECTROOT)/lib /usr/share/X11/config/host.def:16: note: this is the location of the previous definition 16 | #define XUsrLibDirPath /usr/lib64 + subst s/-mcpu=i686/-mtune=i686/ Makefile + make clean rasmol DEPTHDEF=-DEIGHTBIT make: Entering directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:26, from rasmol.c:203: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from molecule.c:220: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from abstree.c:81: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cmndline.c:82: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from command.c:91: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ command.c: In function 'ShowRecordCommand': command.c:1289:27: warning: format not a string literal and no format arguments [-Wformat-security] 1289 | sprintf(param,RecordTemplate); | ^~~~~~~~~~~~~~ command.c: In function 'ShowPlayCommand': command.c:1384:27: warning: format not a string literal and no format arguments [-Wformat-security] 1384 | sprintf(param,PlayTemplate); | ^~~~~~~~~~~~ command.c: In function 'WriteMovieFrame': command.c:1472:25: warning: format not a string literal and no format arguments [-Wformat-security] 1472 | sprintf(param,RecordTemplate); | ^~~~~~~~~~~~~~ command.c: In function 'PlayMovieFrame': command.c:1508:31: warning: format not a string literal and no format arguments [-Wformat-security] 1508 | sprintf(param,PlayTemplate); | ^~~~~~~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from transfor.c:198: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ transfor.c: In function 'ScaleColourMap': transfor.c:1702:23: warning: writing 2 bytes into a region of size 0 [-Wstringop-overflow=] 1702 | { ScaleRef[i].r = 0; | ~~~~~~~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: at offset 124 into destination object 'ScaleRef' of size 120 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ transfor.c:1704:23: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1704 | ScaleRef[i].b = 255; | ~~~~~~~~~~~~~~^~~~~ transfor.h:284:10: note: at offset 126 into destination object 'ScaleRef' of size 120 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from render.c:189: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from repres.c:234: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from pixutils.c:183: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from outfile.c:170: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from script.c:164: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from infile.c:196: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from tokens.c:194: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_fract.c:197: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif.o cif.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif.c:278: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_ctonum.o cif_ctonum.c cif_ctonum.c:198:9: warning: "_USE_RASMOL_H_" redefined 198 | #define _USE_RASMOL_H_ | ^~~~~~~~~~~~~~ : note: this is the location of the previous definition In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_ctonum.c:200: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_stx.o cif_stx.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from cif_stx.c:227: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o multiple.o multiple.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from multiple.c:225: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o vector.o vector.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from vector.c:159: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o wbrotate.o wbrotate.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from wbrotate.c:201: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from langsel_unix.c:114: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o maps.o maps.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from maps.c:81: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o x11win.o x11win.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:26, from x11win.c:232: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ rm -f rasmol gcc -o rasmol -O2 -fno-strength-reduce -fno-strict-aliasing -L/usr/lib64 -L/usr/lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -lcbf -lCQRlib -lCVector -lCNearTree -lgfortran make: Leaving directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' + mv rasmol rasmol-8bpp + make clean rasmol DEPTHDEF=-DSIXTEENBIT make: Entering directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:26, from rasmol.c:203: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from molecule.c:220: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from abstree.c:81: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cmndline.c:82: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from command.c:91: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ command.c: In function 'ShowRecordCommand': command.c:1289:27: warning: format not a string literal and no format arguments [-Wformat-security] 1289 | sprintf(param,RecordTemplate); | ^~~~~~~~~~~~~~ command.c: In function 'ShowPlayCommand': command.c:1384:27: warning: format not a string literal and no format arguments [-Wformat-security] 1384 | sprintf(param,PlayTemplate); | ^~~~~~~~~~~~ command.c: In function 'WriteMovieFrame': command.c:1472:25: warning: format not a string literal and no format arguments [-Wformat-security] 1472 | sprintf(param,RecordTemplate); | ^~~~~~~~~~~~~~ command.c: In function 'PlayMovieFrame': command.c:1508:31: warning: format not a string literal and no format arguments [-Wformat-security] 1508 | sprintf(param,PlayTemplate); | ^~~~~~~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from transfor.c:198: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ transfor.c: In function 'ScaleColourMap': transfor.c:1702:23: warning: writing 2 bytes into a region of size 0 [-Wstringop-overflow=] 1702 | { ScaleRef[i].r = 0; | ~~~~~~~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: at offset 252 into destination object 'ScaleRef' of size 248 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ transfor.c:1704:23: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1704 | ScaleRef[i].b = 255; | ~~~~~~~~~~~~~~^~~~~ transfor.h:284:10: note: at offset 254 into destination object 'ScaleRef' of size 248 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from render.c:189: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from repres.c:234: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from pixutils.c:183: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from outfile.c:170: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from script.c:164: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from infile.c:196: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from tokens.c:194: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_fract.c:197: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif.o cif.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif.c:278: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_ctonum.o cif_ctonum.c cif_ctonum.c:198:9: warning: "_USE_RASMOL_H_" redefined 198 | #define _USE_RASMOL_H_ | ^~~~~~~~~~~~~~ : note: this is the location of the previous definition In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_ctonum.c:200: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_stx.o cif_stx.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from cif_stx.c:227: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o multiple.o multiple.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from multiple.c:225: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o vector.o vector.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from vector.c:159: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o wbrotate.o wbrotate.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from wbrotate.c:201: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from langsel_unix.c:114: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o maps.o maps.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from maps.c:81: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o x11win.o x11win.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:26, from x11win.c:232: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ rm -f rasmol gcc -o rasmol -O2 -fno-strength-reduce -fno-strict-aliasing -L/usr/lib64 -L/usr/lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -lcbf -lCQRlib -lCVector -lCNearTree -lgfortran make: Leaving directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' + mv rasmol rasmol-16bpp + make clean rasmol DEPTHDEF=-DTHIRTYTWOBIT make: Entering directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:26, from rasmol.c:203: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from molecule.c:220: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from abstree.c:81: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cmndline.c:82: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from command.c:91: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ command.c: In function 'ShowRecordCommand': command.c:1289:27: warning: format not a string literal and no format arguments [-Wformat-security] 1289 | sprintf(param,RecordTemplate); | ^~~~~~~~~~~~~~ command.c: In function 'ShowPlayCommand': command.c:1384:27: warning: format not a string literal and no format arguments [-Wformat-security] 1384 | sprintf(param,PlayTemplate); | ^~~~~~~~~~~~ command.c: In function 'WriteMovieFrame': command.c:1472:25: warning: format not a string literal and no format arguments [-Wformat-security] 1472 | sprintf(param,RecordTemplate); | ^~~~~~~~~~~~~~ command.c: In function 'PlayMovieFrame': command.c:1508:31: warning: format not a string literal and no format arguments [-Wformat-security] 1508 | sprintf(param,PlayTemplate); | ^~~~~~~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from transfor.c:198: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ transfor.c: In function 'ScaleColourMap': transfor.c:1702:23: warning: writing 2 bytes into a region of size 0 [-Wstringop-overflow=] 1702 | { ScaleRef[i].r = 0; | ~~~~~~~~~~~~~~^~~ In file included from transfor.c:222: transfor.h:284:10: note: at offset 252 into destination object 'ScaleRef' of size 248 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ transfor.c:1704:23: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1704 | ScaleRef[i].b = 255; | ~~~~~~~~~~~~~~^~~~~ transfor.h:284:10: note: at offset 254 into destination object 'ScaleRef' of size 248 284 | ShadeRef ScaleRef[LastShade]; | ^~~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from render.c:189: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from repres.c:234: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from pixutils.c:183: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from outfile.c:170: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from script.c:164: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from infile.c:196: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from tokens.c:194: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_fract.c:197: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif.o cif.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif.c:278: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_ctonum.o cif_ctonum.c cif_ctonum.c:198:9: warning: "_USE_RASMOL_H_" redefined 198 | #define _USE_RASMOL_H_ | ^~~~~~~~~~~~~~ : note: this is the location of the previous definition In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_ctonum.c:200: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_stx.o cif_stx.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from cif_stx.c:227: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o multiple.o multiple.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from multiple.c:225: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o vector.o vector.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from vector.c:159: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o wbrotate.o wbrotate.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from wbrotate.c:201: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from langsel_unix.c:114: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o maps.o maps.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from maps.c:81: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strength-reduce -fno-strict-aliasing -I/usr/include -I/usr/include -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o x11win.o x11win.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:26, from x11win.c:232: /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ rm -f rasmol gcc -o rasmol -O2 -fno-strength-reduce -fno-strict-aliasing -L/usr/lib64 -L/usr/lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -lcbf -lCQRlib -lCVector -lCNearTree -lgfortran make: Leaving directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' + mv rasmol rasmol-32bpp + popd ~/RPM/BUILD/RasMol-2.7.5.2 + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.3937 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/RasMol-buildroot + : + /bin/rm -rf -- /usr/src/tmp/RasMol-buildroot + PATH=/usr/libexec/rpm-build:/usr/src/bin:/usr/bin:/bin:/usr/local/bin:/usr/games + cd RasMol-2.7.5.2 + find -type f -name .DS_Store -execdir rm '{}' + + install -pDm755 /usr/src/RPM/SOURCES/rasmol.sh /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol + install -pm755 src/rasmol-8bpp /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol-8bpp + install -pm755 src/rasmol-16bpp /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol-16bpp + install -pm755 src/rasmol-32bpp /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol-32bpp + mkdir -p /usr/src/tmp/RasMol-buildroot/usr/share/RasMol /usr/src/tmp/RasMol-buildroot/usr/share/man/man1/ + install -pm644 doc/rasmol.1.gz /usr/src/tmp/RasMol-buildroot/usr/share/man/man1/rasmol.1.gz + install -pm644 doc/rasmol.hlp /usr/src/tmp/RasMol-buildroot/usr/share/RasMol/rasmol.hlp + install -pm644 doc/rasmol.html /usr/src/tmp/RasMol-buildroot/usr/share/RasMol/rasmol.html + pushd doc ~/RPM/BUILD/RasMol-2.7.5.2/doc ~/RPM/BUILD/RasMol-2.7.5.2 + rm rasmol.hlp rasmol.html rasmol.1.gz + mkdir doc + install -pm644 INSTALL.html NOTICE.html README.html esrasmol27.html esrasmol2721.html index.html manualA4.pdf.gz manualUS.pdf.gz refcardA4.pdf.gz refcardUS.pdf.gz manualA4.ps.gz manualUS.ps.gz refcardA4.ps.gz refcardUS.ps.gz manualA4.rtf.gz manualUS.rtf.gz raswin.rtf.gz refcardA4.rtf.gz refcardUS.rtf.gz rasmol.doc.gz doc/ + mkdir examples + popd ~/RPM/BUILD/RasMol-2.7.5.2 + mv data/1crn.pdb data/1gpd.pdb.gz data/1ldb.pdb.gz data/1ldm.pdb.gz data/3cro.pdb data/4hir.ent.gz data/4ins.CIF data/7lyz.pdb data/IUCR9800028.cif data/RSML_fixup.csh data/asprin.alc data/pdb2mcg.ent doc/examples/ + install -pDm644 /usr/src/RPM/SOURCES/rasmol.xpm /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/32x32/apps/rasmol.xpm + install -pDm644 /usr/src/RPM/SOURCES/rasmol_16x14.png /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/16x16/apps/rasmol.png + install -pDm644 /usr/src/RPM/SOURCES/rasmol_32x29.png /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/32x32/apps/rasmol.png + install -pDm644 /usr/src/RPM/SOURCES/rasmol_64x58.png /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/64x64/apps/rasmol.png + install -pDm644 /usr/src/RPM/SOURCES/rasmol.desktop /usr/src/tmp/RasMol-buildroot/usr/share/applications/RasMol.desktop + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/RasMol-buildroot (auto) Verifying and fixing files in /usr/src/tmp/RasMol-buildroot (binconfig,pkgconfig,libtool,desktop,gnuconfig) Checking contents of files in /usr/src/tmp/RasMol-buildroot/ (default) Compressing files in /usr/src/tmp/RasMol-buildroot (auto) 056-debuginfo.brp: WARNING: debuginfo without debug sources. Verifying ELF objects in /usr/src/tmp/RasMol-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) Splitting links to aliased files under /{,s}bin in /usr/src/tmp/RasMol-buildroot Processing files: RasMol-2.7.5.2-alt7 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.46305 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd RasMol-2.7.5.2 + DOCDIR=/usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + export DOCDIR + rm -rf /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + /bin/mkdir -p /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + cp -prL doc/ /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R go-w /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R a+rX /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + cp -prL NOTICE PROJECTS RASLIC README.html README.shtml README.txt INSTALL INSTALL.html TODO.html TODO.txt ChangeLog ChangeLog.html ChangeLog.txt history.html /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R go-w /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R a+rX /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.wTY315 find-provides: running scripts (debuginfo,lib,pam,perl,pkgconfig,python,python3,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.lGcjbk find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,systemd-services) Provides: rasmol = 2.7.5.2-alt7 Requires: fonts-bitmap-75dpi, fonts-bitmap-cyr_rfx-cp1251-75dpi, xdpyinfo, /bin/sh, /lib64/ld-linux-x86-64.so.2, libCNearTree.so.7()(64bit) >= set:jfy8eX61ZJ5rZ4xDtOoY3Ofm, libCQRlib.so.2()(64bit) >= set:jhBWnjL0, libCVector-1.0.3.so.2()(64bit) >= set:hfsOoCd, libX11.so.6()(64bit) >= set:ohc6fbkxsesVSZD9TAWJZxFUMYKZF7XZFHoAwZoYIZ2TYjO5aoG8X4Ct9JQyRnIXmV2F0aHbK2ZEIMkiMh7yzkXHE6SFl6Ha4Znpd3lnVtPcXGZBdges21HaRZJR0gURRPSLYLM70RcAA80Vgr3LUciiZbdtHCjMHh3JmZsZmA0wfU8Z8CaFM9ckOPvlJQeQ8HE5AmdIcwyk5PhmNA2U1e, libXext.so.6()(64bit) >= set:li6tHmY7qME5J7, libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.15)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.34)(64bit), libc.so.6(GLIBC_2.38)(64bit), libc.so.6(GLIBC_2.4)(64bit), libc.so.6(GLIBC_2.7)(64bit), libcbf.so.0()(64bit) >= set:nhij0GYBa6O0x4WIjboz5OU4ATPkFBqBcbzYg8P0ecxUzu3yNivD0dJUmrTQFZ7ZKL0g0Njm3mBpemz9qh1jta3BdIxPLMksDf0UwsKp15JkFisAQRQfEn, libm.so.6(GLIBC_2.2.5)(64bit), libm.so.6(GLIBC_2.29)(64bit), rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.F7eGgB Creating RasMol-debuginfo package Processing files: RasMol-debuginfo-2.7.5.2-alt7 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.d8b7NI find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.ezGaIH find-requires: running scripts (debuginfo) Requires: RasMol = 2.7.5.2-alt7, /usr/lib/debug/lib64/ld-linux-x86-64.so.2.debug, debug64(libCNearTree.so.7), debug64(libCQRlib.so.2), debug64(libCVector-1.0.3.so.2), debug64(libX11.so.6), debug64(libXext.so.6), debug64(libc.so.6), debug64(libcbf.so.0), debug64(libm.so.6) Adding to RasMol-debuginfo a strict dependency on RasMol Wrote: /usr/src/RPM/RPMS/x86_64/RasMol-2.7.5.2-alt7.x86_64.rpm (w2T16.xzdio) Wrote: /usr/src/RPM/RPMS/x86_64/RasMol-debuginfo-2.7.5.2-alt7.x86_64.rpm (w2.lzdio) 41.04user 4.74system 0:47.35elapsed 96%CPU (0avgtext+0avgdata 112988maxresident)k 0inputs+0outputs (0major+1064992minor)pagefaults 0swaps 3.36user 2.62system 0:58.70elapsed 10%CPU (0avgtext+0avgdata 137300maxresident)k 2432inputs+0outputs (0major+207089minor)pagefaults 0swaps --- RasMol-2.7.5.2-alt7.x86_64.rpm.repo 2023-06-29 08:35:58.000000000 +0000 +++ RasMol-2.7.5.2-alt7.x86_64.rpm.hasher 2024-12-19 04:47:02.734196379 +0000 @@ -140,2 +140,3 @@ Requires: libc.so.6(GLIBC_2.34)(64bit) +Requires: libc.so.6(GLIBC_2.38)(64bit) Requires: libc.so.6(GLIBC_2.4)(64bit) @@ -150,5 +151,5 @@ File: /usr/bin/rasmol 100755 root:root 0a6fbafc8996fc169efab77b707322a4 -File: /usr/bin/rasmol-16bpp 100755 root:root 918245d7d0d5985fea19cfe612c1b67c -File: /usr/bin/rasmol-32bpp 100755 root:root 0c77edab742e66e74ec79cfcddde8172 -File: /usr/bin/rasmol-8bpp 100755 root:root edb4675df76b4e10d40354f1be9b5576 +File: /usr/bin/rasmol-16bpp 100755 root:root 04da6c99e3d16e3490c001bd2412ad2b +File: /usr/bin/rasmol-32bpp 100755 root:root 43b1b80ea9d1b38303e7673935fb4593 +File: /usr/bin/rasmol-8bpp 100755 root:root c797b4bc897081c67e9f452345ce4fcd File: /usr/share/RasMol 40755 root:root @@ -272,2 +273,2 @@ File: /usr/share/man/man1/rasmol.1.xz 100644 root:root 9b73f54ed473f9c627909b8ca5350c71 -RPMIdentity: bb64b285fe65e135bc3061c14bb1896804d325a75595f0d37a9e94561cc0051560a22ce1a9b65cbd0585104af99be8cde553a0281806cdd34b5010854efc79c5 +RPMIdentity: 8666f4f8cb53d312da00c9a512bc75b8c7c1dab2721a9d847626fda8f7ebc45befefc6496261e2d8719bf9d991c73cade79e7d4d23a09a294caf93deeab7032d --- RasMol-debuginfo-2.7.5.2-alt7.x86_64.rpm.repo 2023-06-29 08:35:58.000000000 +0000 +++ RasMol-debuginfo-2.7.5.2-alt7.x86_64.rpm.hasher 2024-12-19 04:47:02.808197494 +0000 @@ -1,10 +1,10 @@ -/usr/lib/debug/.build-id/8b 40755 root:root -/usr/lib/debug/.build-id/8b/c157e34ebd6a32410c53fcc9889adb19a1400c 120777 root:root ../../../../bin/rasmol-32bpp -/usr/lib/debug/.build-id/8b/c157e34ebd6a32410c53fcc9889adb19a1400c.debug 120777 root:root ../../usr/bin/rasmol-32bpp.debug -/usr/lib/debug/.build-id/c0 40755 root:root -/usr/lib/debug/.build-id/c0/01bc72fc4560e7c7de75ea217f7d928e9c533b 120777 root:root ../../../../bin/rasmol-16bpp -/usr/lib/debug/.build-id/c0/01bc72fc4560e7c7de75ea217f7d928e9c533b.debug 120777 root:root ../../usr/bin/rasmol-16bpp.debug -/usr/lib/debug/.build-id/c6 40755 root:root -/usr/lib/debug/.build-id/c6/5dad3d2581b22c7d3c6afe9675039a593f50bf 120777 root:root ../../../../bin/rasmol-8bpp -/usr/lib/debug/.build-id/c6/5dad3d2581b22c7d3c6afe9675039a593f50bf.debug 120777 root:root ../../usr/bin/rasmol-8bpp.debug +/usr/lib/debug/.build-id/b2 40755 root:root +/usr/lib/debug/.build-id/b2/1f2bdbdbe8bda2a05a1fb8920a39294cf86dae 120777 root:root ../../../../bin/rasmol-32bpp +/usr/lib/debug/.build-id/b2/1f2bdbdbe8bda2a05a1fb8920a39294cf86dae.debug 120777 root:root ../../usr/bin/rasmol-32bpp.debug +/usr/lib/debug/.build-id/e2 40755 root:root +/usr/lib/debug/.build-id/e2/664752ba74211b651143a5f30566dc4b7d2e58 120777 root:root ../../../../bin/rasmol-8bpp +/usr/lib/debug/.build-id/e2/664752ba74211b651143a5f30566dc4b7d2e58.debug 120777 root:root ../../usr/bin/rasmol-8bpp.debug +/usr/lib/debug/.build-id/fb 40755 root:root +/usr/lib/debug/.build-id/fb/8d7c098d50ef0425b86bf036f51a0c070a1da1 120777 root:root ../../../../bin/rasmol-16bpp +/usr/lib/debug/.build-id/fb/8d7c098d50ef0425b86bf036f51a0c070a1da1.debug 120777 root:root ../../usr/bin/rasmol-16bpp.debug /usr/lib/debug/usr/bin/rasmol-16bpp.debug 100644 root:root @@ -24,14 +24,14 @@ Provides: RasMol-debuginfo = 2.7.5.2-alt7:sisyphus+323875.100.1.1 -File: /usr/lib/debug/.build-id/8b 40755 root:root -File: /usr/lib/debug/.build-id/8b/c157e34ebd6a32410c53fcc9889adb19a1400c 120777 root:root ../../../../bin/rasmol-32bpp -File: /usr/lib/debug/.build-id/8b/c157e34ebd6a32410c53fcc9889adb19a1400c.debug 120777 root:root ../../usr/bin/rasmol-32bpp.debug -File: /usr/lib/debug/.build-id/c0 40755 root:root -File: /usr/lib/debug/.build-id/c0/01bc72fc4560e7c7de75ea217f7d928e9c533b 120777 root:root ../../../../bin/rasmol-16bpp -File: /usr/lib/debug/.build-id/c0/01bc72fc4560e7c7de75ea217f7d928e9c533b.debug 120777 root:root ../../usr/bin/rasmol-16bpp.debug -File: /usr/lib/debug/.build-id/c6 40755 root:root -File: /usr/lib/debug/.build-id/c6/5dad3d2581b22c7d3c6afe9675039a593f50bf 120777 root:root ../../../../bin/rasmol-8bpp -File: /usr/lib/debug/.build-id/c6/5dad3d2581b22c7d3c6afe9675039a593f50bf.debug 120777 root:root ../../usr/bin/rasmol-8bpp.debug -File: /usr/lib/debug/usr/bin/rasmol-16bpp.debug 100644 root:root c6bf09a44e23799c4bb9aa56a8e96833 -File: /usr/lib/debug/usr/bin/rasmol-32bpp.debug 100644 root:root 391862e8b778fbbd33ba374afe94078a -File: /usr/lib/debug/usr/bin/rasmol-8bpp.debug 100644 root:root 3ec9ec7e8fb7c452daa25d8b14083855 -RPMIdentity: fdaa859f551717da1860dd0492eef5be8e3d088f15220fc1819ae72c7e38a7ea1b92df7535029ad2d45c6d57718ed6efc1e907ed56178dd07b8a048e40f7c479 +File: /usr/lib/debug/.build-id/b2 40755 root:root +File: /usr/lib/debug/.build-id/b2/1f2bdbdbe8bda2a05a1fb8920a39294cf86dae 120777 root:root ../../../../bin/rasmol-32bpp +File: /usr/lib/debug/.build-id/b2/1f2bdbdbe8bda2a05a1fb8920a39294cf86dae.debug 120777 root:root ../../usr/bin/rasmol-32bpp.debug +File: /usr/lib/debug/.build-id/e2 40755 root:root +File: /usr/lib/debug/.build-id/e2/664752ba74211b651143a5f30566dc4b7d2e58 120777 root:root ../../../../bin/rasmol-8bpp +File: /usr/lib/debug/.build-id/e2/664752ba74211b651143a5f30566dc4b7d2e58.debug 120777 root:root ../../usr/bin/rasmol-8bpp.debug +File: /usr/lib/debug/.build-id/fb 40755 root:root +File: /usr/lib/debug/.build-id/fb/8d7c098d50ef0425b86bf036f51a0c070a1da1 120777 root:root ../../../../bin/rasmol-16bpp +File: /usr/lib/debug/.build-id/fb/8d7c098d50ef0425b86bf036f51a0c070a1da1.debug 120777 root:root ../../usr/bin/rasmol-16bpp.debug +File: /usr/lib/debug/usr/bin/rasmol-16bpp.debug 100644 root:root f19d2d31f4b510a7580ec1e4537c914d +File: /usr/lib/debug/usr/bin/rasmol-32bpp.debug 100644 root:root 1f91e042a161b93af335a483a9dc4cef +File: /usr/lib/debug/usr/bin/rasmol-8bpp.debug 100644 root:root 88c80ceed6e289ab38f05bf5d95aced9 +RPMIdentity: 31f2f092eb2e7f885614a453240fa770f018fc2750d9eca6909e9d68a72888eac8d8dbe4a1ee9d3c00667eca502807363b35e35d5fd5779545c611a4268697c5