<86>Oct 4 04:23:51 userdel[2636989]: delete user 'rooter' <86>Oct 4 04:23:51 userdel[2636989]: removed group 'rooter' owned by 'rooter' <86>Oct 4 04:23:51 userdel[2636989]: removed shadow group 'rooter' owned by 'rooter' <86>Oct 4 04:23:51 groupadd[2637000]: group added to /etc/group: name=rooter, GID=1211 <86>Oct 4 04:23:51 groupadd[2637000]: group added to /etc/gshadow: name=rooter <86>Oct 4 04:23:51 groupadd[2637000]: new group: name=rooter, GID=1211 <86>Oct 4 04:23:51 useradd[2637009]: new user: name=rooter, UID=1211, GID=1211, home=/root, shell=/bin/bash, from=none <86>Oct 4 04:23:51 userdel[2637027]: delete user 'builder' <86>Oct 4 04:23:51 userdel[2637027]: removed group 'builder' owned by 'builder' <86>Oct 4 04:23:51 userdel[2637027]: removed shadow group 'builder' owned by 'builder' <86>Oct 4 04:23:51 groupadd[2637037]: group added to /etc/group: name=builder, GID=1212 <86>Oct 4 04:23:51 groupadd[2637037]: group added to /etc/gshadow: name=builder <86>Oct 4 04:23:51 groupadd[2637037]: new group: name=builder, GID=1212 <86>Oct 4 04:23:51 useradd[2637046]: new user: name=builder, UID=1212, GID=1212, home=/usr/src, shell=/bin/bash, from=none warning: Macro %cmake not found warning: Macro %cmake_build not found warning: Macro %cmake_install not found <13>Oct 4 04:24:00 rpmi: libjpeg-2:3.0.2-alt2.1 sisyphus+340135.100.1.1 1707449145 installed <13>Oct 4 04:24:00 rpmi: libpng16-1.6.42-alt2 sisyphus+339555.100.1.1 1706781682 installed <13>Oct 4 04:24:00 rpmi: libwayland-client-1.23.1-alt1.1 sisyphus+356019.140.3.1 1724572111 installed <13>Oct 4 04:24:00 rpmi: libexpat-2.5.0-alt1 sisyphus+346180.200.2.1 1716349835 installed <13>Oct 4 04:24:00 rpmi: libgomp1-13.2.1-alt4 sisyphus+354645.100.1.1 1723060849 installed <13>Oct 4 04:24:00 rpmi: libogg-1.3.5-alt1 sisyphus+278100.3400.1.1 1626058929 installed <13>Oct 4 04:24:00 rpmi: libvorbis-1.3.7-alt1 sisyphus+275738.100.1.1 1624751601 installed <13>Oct 4 04:24:00 rpmi: libraw1394-11-2.1.2-alt1 sisyphus+278262.100.1.1 1626081867 installed <13>Oct 4 04:24:00 rpmi: libgudev-1:238-alt1 sisyphus+324364.100.1.1 1688646144 installed <13>Oct 4 04:24:00 rpmi: liblcms2-2.16-alt1 sisyphus+335676.100.1.1 1701682597 installed <13>Oct 4 04:24:00 rpmi: libwebp7-1.4.0-alt1 sisyphus+345159.200.1.1 1713168663 installed <13>Oct 4 04:24:01 rpmi: libopus-1.5.2-alt1 sisyphus+347834.100.1.1 1715455356 installed <13>Oct 4 04:24:01 rpmi: libboost_system1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:01 rpmi: libsuitesparseconfig7-7.7.0-alt2 sisyphus+348694.100.1.1 1716437881 installed <13>Oct 4 04:24:01 rpmi: libusb-1.0.27-alt1 sisyphus+347412.100.1.1 1714739651 installed <13>Oct 4 04:24:02 rpmi: libicu74-1:7.4.2-alt1 sisyphus+336372.200.1.1 1702423005 installed <13>Oct 4 04:24:02 rpmi: xorg-proto-devel-2024.1-alt1 sisyphus+343583.40.1.1 1711440649 installed <13>Oct 4 04:24:02 rpmi: libtheora-2:1.1.1-alt6 sisyphus+277967.100.1.1 1625928129 installed <13>Oct 4 04:24:02 rpmi: libwayland-egl-4:18.1.0-alt1.1 sisyphus+356019.140.3.1 1724572111 installed <13>Oct 4 04:24:02 rpmi: libhyphen-2.8.8-alt1 sisyphus+278186.100.1.1 1626075927 installed <13>Oct 4 04:24:02 rpmi: libopenblas-0.3.28-alt1 sisyphus+356644.100.1.1 1725289674 installed <13>Oct 4 04:24:02 rpmi: libsqlite3-3.46.0-alt1 sisyphus+352354.100.2.1 1721980422 installed <13>Oct 4 04:24:02 rpmi: perl-HTTP-Date-6.06-alt1 sisyphus+324527.100.1.1 1688834564 installed <13>Oct 4 04:24:02 rpmi: perl-XML-NamespaceSupport-1.12-alt1 1491296348 installed <13>Oct 4 04:24:02 rpmi: libSDL2-2.30.8-alt1 sisyphus+358811.100.1.1 1727865598 installed <13>Oct 4 04:24:02 rpmi: liborc-0.4.40-alt1 sisyphus+357575.100.1.1 1726413203 installed <13>Oct 4 04:24:02 rpmi: libwayland-server-1.23.1-alt1.1 sisyphus+356019.140.3.1 1724572111 installed <13>Oct 4 04:24:02 rpmi: libserd-0.32.2-alt1 sisyphus+341428.200.1.1 1708949158 installed <13>Oct 4 04:24:02 rpmi: libvpl2-2.13.0-alt1 sisyphus+357848.100.2.1 1726737480 installed <13>Oct 4 04:24:02 rpmi: libspeex-1.2.1-alt1 sisyphus+339763.100.1.1 1707113839 installed <13>Oct 4 04:24:02 rpmi: libfribidi-1.0.16-alt1 sisyphus+358393.100.1.1 1727333692 installed <13>Oct 4 04:24:02 rpmi: liblame-3.100-alt1 sisyphus+346342.200.2.2 1716474674 installed <13>Oct 4 04:24:02 rpmi: libgsm-1.0.17-alt1 sisyphus+275359.100.2.1 1624907612 installed <13>Oct 4 04:24:02 rpmi: libdav1d_7-1.4.3-alt1 sisyphus+351889.100.1.1 1719823612 installed <13>Oct 4 04:24:02 rpmi: libopenjpeg2.0-2.5.2-alt1 sisyphus+341637.100.1.1 1709150017 installed <13>Oct 4 04:24:02 rpmi: libidn2-2.3.7-alt1 sisyphus+339505.100.1.2 1706718968 installed <13>Oct 4 04:24:02 rpmi: libnettle8-3.9.1-alt1 sisyphus+322548.100.1.2 1686176879 installed <13>Oct 4 04:24:02 rpmi: libquadmath0-13.2.1-alt4 sisyphus+354645.100.1.1 1723060849 installed <13>Oct 4 04:24:02 rpmi: libtasn1-4.19.0-alt3 sisyphus+327816.100.1.1 1692802615 installed <13>Oct 4 04:24:02 rpmi: libatk-2.54.0-alt1 sisyphus+357735.600.3.1 1726642126 installed <13>Oct 4 04:24:02 rpmi: libgfortran5-13.2.1-alt4 sisyphus+354645.100.1.1 1723060849 installed <13>Oct 4 04:24:02 rpmi: libdc1394-22-2.2.5-alt1.1 sisyphus+311484.100.1.1 1670647146 installed <13>Oct 4 04:24:02 rpmi: libiec61883-1.2.0-alt1.qa1 sisyphus+275365.100.1.2 1624491850 installed <13>Oct 4 04:24:02 rpmi: libflac12-1.4.3-alt2 sisyphus+343354.100.1.1 1711118098 installed <13>Oct 4 04:24:02 rpmi: libwayland-cursor-1.23.1-alt1.1 sisyphus+356019.140.3.1 1724572111 installed <13>Oct 4 04:24:02 rpmi: libv4l-1.28.1-alt1 sisyphus+353586.100.1.1 1721897959 installed <13>Oct 4 04:24:02 rpmi: libncurses6-6.3.20220618-alt4 sisyphus+327286.4600.14.1 1711486705 installed <13>Oct 4 04:24:02 rpmi: libgflags-2.2.2-alt3 sisyphus+319790.100.1.1 1683117277 installed <13>Oct 4 04:24:02 rpmi: libdv-1.0.0-alt6 sisyphus+286805.100.2.1 1633968015 installed <13>Oct 4 04:24:02 rpmi: libxslt-1.1.39-alt1 sisyphus+349406.100.1.1 1716751806 installed <13>Oct 4 04:24:02 rpmi: libepoxy-1.5.10-alt1 sisyphus+296853.200.2.1 1647631866 installed <13>Oct 4 04:24:02 rpmi: perl-LWP-MediaTypes-6.04-alt1 sisyphus+225468.100.1.1 1553186684 installed <13>Oct 4 04:24:02 rpmi: perl-Compress-Raw-Zlib-2.206-alt1 sisyphus+335067.600.1.1 1700901499 installed <13>Oct 4 04:24:02 rpmi: perl-libnet-1:3.15-alt1 sisyphus+317310.100.1.1 1679580208 installed <13>Oct 4 04:24:02 rpmi: perl-XML-SAX-Base-1.09-alt1 1494364363 installed <13>Oct 4 04:24:02 rpmi: libwebrtc-audio-processing-1.3-alt2 sisyphus+332026.100.1.1 1697579361 installed <13>Oct 4 04:24:02 rpmi: libsbc1-2.0-alt2 sisyphus+322708.100.1.1 1686327806 installed <13>Oct 4 04:24:02 rpmi: liblc3-1.1.1-alt1 sisyphus+347780.100.1.1 1715374023 installed <13>Oct 4 04:24:02 rpmi: libfreeaptx-0.1.1-alt1 sisyphus+282022.100.1.1 1628182661 installed <13>Oct 4 04:24:02 rpmi: libfdk-aac2-2.0.3-alt0.1 sisyphus+338863.100.1.1 1706094241 installed <13>Oct 4 04:24:02 rpmi: libdvdread8-6.1.3-alt1 sisyphus+302642.100.1.1 1656163148 installed <13>Oct 4 04:24:02 rpmi: libimath29-3.1.6-alt4 sisyphus+347973.100.1.1 1715620450 installed <13>Oct 4 04:24:02 rpmi: libiex30-3.1.5-alt2.2 sisyphus+324124.100.1.1 1688379858 installed <13>Oct 4 04:24:02 rpmi: libzeromq-4.3.4-alt3 sisyphus+326735.200.2.1 1691482840 installed <13>Oct 4 04:24:02 rpmi: libmpg123-1:1.32.7-alt1 sisyphus+354663.100.1.1 1723095997 installed <13>Oct 4 04:24:02 rpmi: libsndfile-1.1.0-alt1 sisyphus+339776.7300.6.2 1707350065 installed <13>Oct 4 04:24:03 rpmi: libunwind-1.7.0-alt2 sisyphus+335269.100.1.1 1701110934 installed <13>Oct 4 04:24:03 rpmi: libglog2-0.7.1-alt1 sisyphus+350246.140.8.1 1724736246 installed <13>Oct 4 04:24:03 rpmi: libspirv-tools0-1:2024.3-alt0.1 sisyphus+356274.200.1.1 1724862331 installed <13>Oct 4 04:24:03 rpmi: libzix-0.4.2-alt1 sisyphus+341428.100.1.1 1708949131 installed <13>Oct 4 04:24:03 rpmi: libsord-0.16.16-alt1 sisyphus+341428.300.1.1 1708949185 installed <13>Oct 4 04:24:03 rpmi: libbs2b-3.1.0-alt1.4 sisyphus+346078.200.2.1 1716241402 installed <13>Oct 4 04:24:03 rpmi: libvpx9-1.14.1-alt1 sisyphus+351742.40.3.1 1719836000 installed <13>Oct 4 04:24:03 rpmi: libglvnd-7:1.7.0-alt1 sisyphus+330949.100.1.1 1696424893 installed <13>Oct 4 04:24:03 rpmi: libtwolame-0.4.0-alt1 sisyphus+277783.100.1.1 1625798476 installed <13>Oct 4 04:24:03 rpmi: libaom3-3.9.1-alt2 sisyphus+354446.100.1.1 1722877371 installed <13>Oct 4 04:24:03 rpmi: gcc-c++-common-1.4.28-alt1 sisyphus+348678.100.1.1 1716396142 installed <13>Oct 4 04:24:03 rpmi: libgraphite2-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605111 installed <13>Oct 4 04:24:03 rpmi: zlib-devel-1.3.1-alt1 sisyphus+342532.100.1.1 1710232285 installed <13>Oct 4 04:24:03 rpmi: libgdbm-1.8.3-alt10 sisyphus+346222.200.3.2 1716468404 installed <13>Oct 4 04:24:03 rpmi: xml-utils-1:2.12.9-alt1 sisyphus+355784.100.1.1 1724333686 installed <13>Oct 4 04:24:03 rpmi: libbrotlicommon-1.1.0-alt1 sisyphus+328501.100.1.1 1693598419 installed <13>Oct 4 04:24:03 rpmi: libbrotlidec-1.1.0-alt1 sisyphus+328501.100.1.1 1693598419 installed <13>Oct 4 04:24:03 rpmi: libharfbuzz-10.0.1-alt1 sisyphus+358317.100.1.1 1727257731 installed <13>Oct 4 04:24:03 rpmi: libfreetype-2.13.3-alt1 sisyphus+355656.100.1.1 1724221064 installed <13>Oct 4 04:24:03 rpmi: libfontconfig1-2.15.0-alt1 sisyphus+355771.100.2.3 1724337298 installed <13>Oct 4 04:24:03 rpmi: libass9-0.17.3-alt1 sisyphus+352066.100.1.1 1720008822 installed <13>Oct 4 04:24:03 rpmi: libharfbuzz-icu-10.0.1-alt1 sisyphus+358317.100.1.1 1727257731 installed <13>Oct 4 04:24:03 rpmi: libbrotlienc-1.1.0-alt1 sisyphus+328501.100.1.1 1693598419 installed <13>Oct 4 04:24:03 rpmi: libp11-kit-1:0.25.5-alt1 sisyphus+352553.100.1.1 1720622573 installed <13>Oct 4 04:24:03 rpmi: libXau-1.0.11-alt1 sisyphus+311428.100.1.1 1670577439 installed <13>Oct 4 04:24:03 rpmi: libXau-devel-1.0.11-alt1 sisyphus+311428.100.1.1 1670577439 installed <13>Oct 4 04:24:03 rpmi: libwoff2-1.0.2-alt3 sisyphus+302729.100.1.1 1656351540 installed <13>Oct 4 04:24:03 rpmi: fontconfig-2.15.0-alt1 sisyphus+355771.100.2.3 1724337298 installed Updating fonts cache: <29>Oct 4 04:24:04 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Oct 4 04:24:04 rpmi: libharfbuzz-gobject-10.0.1-alt1 sisyphus+358317.100.1.1 1727257731 installed <13>Oct 4 04:24:04 rpmi: rpm-build-gir-0.7.3-alt3.1 sisyphus+319393.100.1.1 1682538783 installed <13>Oct 4 04:24:04 rpmi: libgdbm-devel-1.8.3-alt10 sisyphus+346222.200.3.2 1716468404 installed <13>Oct 4 04:24:04 rpmi: perl-devel-1:5.38.2-alt0.2 sisyphus+344512.40.2.1 1712358015 installed <13>Oct 4 04:24:04 rpmi: swig-data-1:4.1.1-alt8 sisyphus+339194.200.2.1 1706442289 installed <13>Oct 4 04:24:04 rpmi: libpng-devel-1.6.42-alt2 sisyphus+339555.100.1.1 1706781682 installed <13>Oct 4 04:24:04 rpmi: libgraphite2-devel-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605111 installed <13>Oct 4 04:24:05 rpmi: libstdc++13-devel-13.2.1-alt4 sisyphus+354645.100.1.1 1723060849 installed <13>Oct 4 04:24:06 rpmi: gcc13-c++-13.2.1-alt4 sisyphus+354645.100.1.1 1723060849 installed <13>Oct 4 04:24:06 rpmi: libsratom-0.6.16-alt1 sisyphus+341428.400.1.1 1708949212 installed <13>Oct 4 04:24:06 rpmi: liblilv-0.24.24-alt2 sisyphus+341494.100.1.1 1709024102 installed <13>Oct 4 04:24:06 rpmi: libglslang14-1:14.3.0-alt1 sisyphus+356274.300.1.1 1724862437 installed <13>Oct 4 04:24:06 rpmi: libshaderc1-2024.1-alt0.1 sisyphus+351081.100.1.1 1718627214 installed <13>Oct 4 04:24:06 rpmi: libsamplerate-0.2.2-alt1 sisyphus+284642.100.1.1 1630906301 installed <13>Oct 4 04:24:06 rpmi: libinstpatch-1.1.6-alt1.1 sisyphus+279572.100.1.2 1626605094 installed <13>Oct 4 04:24:06 rpmi: libilmthread30-3.1.5-alt2.2 sisyphus+324124.100.1.1 1688379858 installed <13>Oct 4 04:24:06 rpmi: libopenexr30-3.1.5-alt2.2 sisyphus+324124.100.1.1 1688379858 installed <13>Oct 4 04:24:06 rpmi: libdvdnav-6.1.1-alt1 sisyphus+279367.100.1.1 1626478896 installed <13>Oct 4 04:24:06 rpmi: libquadmath13-devel-13.2.1-alt4 sisyphus+354645.100.1.1 1723060849 installed <13>Oct 4 04:24:06 rpmi: libquadmath-devel-13-alt1 sisyphus+323337.300.1.1 1687267966 installed <13>Oct 4 04:24:06 rpmi: libboost_charconv1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:06 rpmi: libhogweed6-3.9.1-alt1 sisyphus+322548.100.1.2 1686176879 installed <13>Oct 4 04:24:06 rpmi: libgnutls30-3.8.4-alt1 sisyphus+343729.100.2.1 1711571288 installed <13>Oct 4 04:24:06 rpmi: libngtcp2.16-1.7.0-alt1 sisyphus+356415.200.1.1 1725031912 installed <13>Oct 4 04:24:06 rpmi: libngtcp2_crypto_gnutls8-1.7.0-alt1 sisyphus+356415.200.1.1 1725031912 installed <13>Oct 4 04:24:06 rpmi: perl-File-Listing-6.16-alt1 sisyphus+325783.100.1.1 1690559356 installed <13>Oct 4 04:24:06 rpmi: hyphen-en-2.8.8-alt1 sisyphus+278186.100.1.1 1626075927 installed <13>Oct 4 04:24:06 rpmi: hyphen-ru-20020727-alt3 sisyphus+276848.100.1.1 1625243550 installed <13>Oct 4 04:24:06 rpmi: icu-utils-1:7.4.2-alt1 sisyphus+336372.200.1.1 1702423005 installed <13>Oct 4 04:24:06 rpmi: libicu-devel-1:7.4.2-alt1 sisyphus+336372.200.1.1 1702423005 installed <13>Oct 4 04:24:06 rpmi: libamd3-7.7.0-alt2 sisyphus+348694.100.1.1 1716437881 installed <13>Oct 4 04:24:06 rpmi: libcamd3-7.7.0-alt2 sisyphus+348694.100.1.1 1716437881 installed <13>Oct 4 04:24:06 rpmi: libcolamd3-7.7.0-alt2 sisyphus+348694.100.1.1 1716437881 installed <13>Oct 4 04:24:06 rpmi: libccolamd3-7.7.0-alt2 sisyphus+348694.100.1.1 1716437881 installed <13>Oct 4 04:24:06 rpmi: libboost_atomic1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:06 rpmi: libboost_contract1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:06 rpmi: libboost_chrono1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:06 rpmi: libboost_timer1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:06 rpmi: libboost_thread1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:06 rpmi: libboost_type_erasure1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:06 rpmi: libboost_filesystem1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:06 rpmi: libavc1394-0.5.4-alt2 sisyphus+284572.100.1.1 1630712939 installed <13>Oct 4 04:24:06 rpmi: libvidstab-1.1.0-alt2.1 sisyphus+279558.100.1.2 1626596087 installed <13>Oct 4 04:24:06 rpmi: libsoundtouch-2.3.3-alt1 sisyphus+344043.100.1.1 1711799526 installed <13>Oct 4 04:24:06 rpmi: libyuv-0.0.1874-alt1 sisyphus+326054.40.2.1 1690679392 installed <13>Oct 4 04:24:06 rpmi: libvoikko-4.3.2-alt1_3 sisyphus+328233.100.1.1 1693337992 installed <13>Oct 4 04:24:06 rpmi: voikko-fi-2.5-alt1_3 sisyphus+312416.100.1.1 1671876516 installed <13>Oct 4 04:24:06 rpmi: libtinfo-devel-6.3.20220618-alt4 sisyphus+327286.4600.14.1 1711486705 installed <13>Oct 4 04:24:06 rpmi: libncurses-devel-6.3.20220618-alt4 sisyphus+327286.4600.14.1 1711486705 installed <13>Oct 4 04:24:06 rpmi: libmspack-1.11-alt1 sisyphus+319133.100.1.1 1682243802 installed <13>Oct 4 04:24:06 rpmi: libevdev-1.13.3-alt1 sisyphus+356918.100.1.1 1725546440 installed <13>Oct 4 04:24:06 rpmi: libhunspell-1.7.2-alt1 sisyphus+346301.200.2.1 1716443379 installed <13>Oct 4 04:24:06 rpmi: libbacktrace-1.0-alt0.3.gcdb64b6 sisyphus+324404.100.1.1 1688722838 installed <13>Oct 4 04:24:06 rpmi: librav1e-0.7.1-alt1 sisyphus+338722.100.1.1 1706001596 installed <13>Oct 4 04:24:06 rpmi: libavif-1.1.1-alt1 sisyphus+356778.100.1.1 1725438291 installed <13>Oct 4 04:24:06 rpmi: libaspell-0.60.8-alt2 sisyphus+328357.100.1.1 1693435312 installed <13>Oct 4 04:24:06 rpmi: libenchant2-1:2.8.2-alt1 sisyphus+355237.100.1.1 1723731984 installed <13>Oct 4 04:24:06 rpmi: libICE-1.1.1-alt1 sisyphus+311428.500.1.1 1670577555 installed <13>Oct 4 04:24:06 rpmi: libSM-1.2.4-alt1 sisyphus+312057.200.1.1 1671526916 installed <13>Oct 4 04:24:07 rpmi: highway-libs-1.2.0-alt1 sisyphus+350172.100.1.1 1717270054 installed <13>Oct 4 04:24:07 rpmi: libwavpack-5.7.0-alt1 sisyphus+342915.100.1.1 1710636743 installed <13>Oct 4 04:24:07 rpmi: libtag-1.12-alt1 sisyphus+277260.100.1.1 1625423537 installed <13>Oct 4 04:24:07 rpmi: libpcre3-8.45-alt2 sisyphus+283722.100.1.2 1629848198 installed <13>Oct 4 04:24:07 rpmi: libslang2-2.3.3-alt1 sisyphus+314492.100.1.1 1675240386 installed <13>Oct 4 04:24:07 rpmi: libvisual0.4-0.4.0-alt3 sisyphus+276250.100.1.2 1624927462 installed <13>Oct 4 04:24:07 rpmi: libgraphene-1.10.8-alt1 sisyphus+296855.100.1.1 1647633383 installed <13>Oct 4 04:24:07 rpmi: libcdparanoia-1:10.2-alt6 sisyphus+346090.200.2.1 1716245892 installed <13>Oct 4 04:24:07 rpmi: libvo-amrwbenc-0.1.3-alt1 sisyphus+275410.100.1.2 1624504610 installed <13>Oct 4 04:24:07 rpmi: libvo-aacenc-0.1.3-alt2 sisyphus+285812.100.1.1 1632410909 installed <13>Oct 4 04:24:07 rpmi: libsrtp2-2.6.0-alt1 sisyphus+341594.100.1.1 1709111211 installed <13>Oct 4 04:24:07 rpmi: libopenh264-2.4.1-alt1 sisyphus+339659.100.1.1 1706889394 installed <13>Oct 4 04:24:07 rpmi: libtbb-2021.13.0-alt1 sisyphus+351726.100.1.1 1719561727 installed <13>Oct 4 04:24:07 rpmi: libprotobuf32-3.21.12-alt5 sisyphus+353063.24400.30.1 1723234273 installed <13>Oct 4 04:24:07 rpmi: libxblas-1.0.248-alt2 sisyphus+285045.40.2.1 1631388330 installed <13>Oct 4 04:24:07 rpmi: liblapack-1:3.8.0-alt7 sisyphus+340675.300.1.1 1707908338 installed <13>Oct 4 04:24:07 rpmi: libcholmod5-7.7.0-alt2 sisyphus+348694.100.1.1 1716437881 installed <13>Oct 4 04:24:07 rpmi: libspqr4-7.7.0-alt2 sisyphus+348694.100.1.1 1716437881 installed <13>Oct 4 04:24:07 rpmi: libopenal1-1.22.2-alt2 sisyphus+331513.100.1.2 1697028598 installed <13>Oct 4 04:24:07 rpmi: libmodplug-0.8.9.0-alt1 sisyphus+275375.100.2.2 1624495419 installed <13>Oct 4 04:24:07 rpmi: libyajl-2.1.0-alt3 sisyphus+322972.100.1.1 1686724493 installed <13>Oct 4 04:24:07 rpmi: libxkbcommon-1.7.0-alt1.1 sisyphus+343672.100.1.1 1711490810 installed <13>Oct 4 04:24:07 rpmi: usbids-20240206-alt1 sisyphus+339943.100.1.1 1707270512 installed <13>Oct 4 04:24:07 rpmi: pciids-20240913-alt1 sisyphus+357455.100.1.1 1726250568 installed <13>Oct 4 04:24:07 rpmi: hwdata-0.384-alt1 sisyphus+354460.100.1.1 1722898493 installed <13>Oct 4 04:24:07 rpmi: gtk+3-themes-incompatible-3.20-alt3 1461944560 installed <13>Oct 4 04:24:07 rpmi: perl-Try-Tiny-0.31-alt1 sisyphus+290597.100.1.1 1637915507 installed <13>Oct 4 04:24:07 rpmi: perl-IO-Socket-IP-0.42-alt1 sisyphus+325815.100.1.2 1690571193 installed <13>Oct 4 04:24:07 rpmi: perl-Module-Load-0.36-alt1 sisyphus+258992.100.1.1 1601543407 installed <13>Oct 4 04:24:07 rpmi: perl-Compress-Raw-Bzip2-2.210-alt1 sisyphus+343108.100.1.3 1710881036 installed <13>Oct 4 04:24:07 rpmi: perl-IO-Compress-Brotli-2:0.004001-alt3 sisyphus+335067.1200.1.1 1700901589 installed <13>Oct 4 04:24:07 rpmi: perl-Clone-0.46-alt1 sisyphus+335067.1100.1.1 1700901562 installed <13>Oct 4 04:24:07 rpmi: perl-HTML-Tagset-3.24-alt1 sisyphus+343117.100.1.3 1710883587 installed <13>Oct 4 04:24:07 rpmi: perl-Term-ANSIColor-5.01-alt1 sisyphus+244783.100.1.2 1579747505 installed <13>Oct 4 04:24:07 rpmi: perl-Data-Dump-1.25-alt1 sisyphus+276551.100.1.1 1625126880 installed <13>Oct 4 04:24:07 rpmi: perl-Filter-1.64-alt1 sisyphus+335067.400.1.1 1700901412 installed <13>Oct 4 04:24:07 rpmi: perl-Encode-3.21-alt1 sisyphus+343095.100.1.1 1710875477 installed <13>Oct 4 04:24:07 rpmi: perl-URI-5.27-alt1 sisyphus+340901.100.1.1 1708180683 installed <13>Oct 4 04:24:07 rpmi: perl-IO-Compress-2.206-alt1 sisyphus+325819.100.1.1 1690563199 installed <13>Oct 4 04:24:07 rpmi: perl-Net-HTTP-6.23-alt1 sisyphus+323470.100.1.1 1687422469 installed <13>Oct 4 04:24:07 rpmi: perl-HTML-Parser-3.82-alt1 sisyphus+343116.100.1.3 1710883258 installed <13>Oct 4 04:24:07 rpmi: perl-WWW-RobotRules-6.02-alt1 1329756211 installed <13>Oct 4 04:24:07 rpmi: perl-Encode-Locale-1.05-alt1 1444608613 installed <13>Oct 4 04:24:07 rpmi: perl-IO-HTML-1.004-alt1 sisyphus+258983.100.1.1 1601542619 installed <13>Oct 4 04:24:07 rpmi: perl-HTTP-Message-6.45-alt1 sisyphus+330728.100.1.1 1696162276 installed <13>Oct 4 04:24:07 rpmi: perl-HTTP-Negotiate-6.01-alt1 1329760563 installed <13>Oct 4 04:24:08 rpmi: perl-libwww-6.77-alt1 sisyphus+343120.100.1.2 1710884405 installed <13>Oct 4 04:24:08 rpmi: perl-XML-LibXML-2.0210-alt8 sisyphus+355798.100.1.1 1724340088 installed <13>Oct 4 04:24:08 rpmi: perl-XML-SAX-1.02-alt1 sisyphus+232322.100.1.1 1560758406 installed <13>Oct 4 04:24:08 rpmi: perl-XML-Simple-2.25-alt2 sisyphus+257498.100.1.1 1599324034 installed <13>Oct 4 04:24:08 rpmi: icon-naming-utils-0.8.90-alt1 sisyphus+276851.100.1.1 1625243947 installed <13>Oct 4 04:24:08 rpmi: icon-theme-adwaita-47.0-alt1 sisyphus+357735.1000.3.1 1726642413 installed <13>Oct 4 04:24:08 rpmi: liblash-1:0.5.4-alt1_51 sisyphus+346344.200.2.3 1716476919 installed <13>Oct 4 04:24:08 rpmi: libmysofa-1.3.2-alt1 sisyphus+335142.100.1.1 1701003723 installed <13>Oct 4 04:24:08 rpmi: libldac2-2.0.2.3-alt0.1 sisyphus+278007.100.1.2 1625973044 installed <13>Oct 4 04:24:08 rpmi: libsigc++2-2.12.1-alt1 sisyphus+331046.200.2.1 1696511642 installed <13>Oct 4 04:24:08 rpmi: libconfig-c++11-1.7.3-alt1 sisyphus+356893.2177.17.1 1725864292 installed <13>Oct 4 04:24:08 rpmi: libtdb-1.4.10-alt1 sisyphus+342425.100.8.1 1714748986 installed <13>Oct 4 04:24:08 rpmi: libltdl7-2.4.7-alt5 sisyphus+341963.200.3.1 1711659208 installed <13>Oct 4 04:24:08 rpmi: libasyncns-0.8-alt2.qa1 sisyphus+275091.100.1.1 1624402241 installed <13>Oct 4 04:24:08 rpmi: sound-theme-freedesktop-0.8-alt1 sisyphus+277010.100.1.2 1625346634 installed <13>Oct 4 04:24:08 rpmi: libyaml2-0.2.5-alt1 sisyphus+278391.100.1.1 1626094928 installed <13>Oct 4 04:24:08 rpmi: libgtest-1.13.0-alt2 sisyphus+346258.200.2.1 1716419382 installed <13>Oct 4 04:24:08 rpmi: libbluez-5.78-alt1 sisyphus+358469.100.1.1 1727429927 installed <13>Oct 4 04:24:08 rpmi: libfaad2-2.11.1-alt1 sisyphus+338260.100.2.2 1705755212 installed <13>Oct 4 04:24:08 rpmi: libfaac0-1.28-alt2 sisyphus+346184.200.2.1 1716351469 installed <13>Oct 4 04:24:08 rpmi: libdca0-0.0.5-alt4.qa1 sisyphus+275349.100.1.2 1624487408 installed <13>Oct 4 04:24:08 rpmi: libzxing-cpp-2.2.1-alt1 sisyphus+336233.100.1.1 1702264522 installed <13>Oct 4 04:24:08 rpmi: libgme-0.6.3-alt2 sisyphus+293048.100.1.1 1641452306 installed <13>Oct 4 04:24:08 rpmi: libudfread-1.1.2-alt2 sisyphus+286325.100.1.1 1633263312 installed <13>Oct 4 04:24:08 rpmi: libbluray-1.3.4-alt1 sisyphus+310888.100.1.1 1669800489 installed <13>Oct 4 04:24:08 rpmi: libzimg2-3.0.5-alt1 sisyphus+324805.100.1.1 1689254328 installed <13>Oct 4 04:24:08 rpmi: libfftw3-common-3.3.10-alt1 sisyphus+356291.100.2.1 1725355952 installed <13>Oct 4 04:24:08 rpmi: libfftw3-3.3.10-alt1 sisyphus+356291.100.2.1 1725355952 installed <13>Oct 4 04:24:08 rpmi: libchromaprint1-1.5.1-alt1 sisyphus+346100.200.2.1 1716252063 installed <13>Oct 4 04:24:08 rpmi: librubberband-3.3.0-alt1 sisyphus+328096.300.3.1 1693230966 installed <13>Oct 4 04:24:08 rpmi: vulkan-filesystem-1.3.290-alt1 sisyphus+356274.700.2.1 1724875216 installed <13>Oct 4 04:24:08 rpmi: libvulkan1-1.3.290-alt1 sisyphus+356274.700.2.1 1724875216 installed <13>Oct 4 04:24:08 rpmi: libdovi3-2.1.2-alt1 sisyphus+354426.100.1.1 1722863450 installed <13>Oct 4 04:24:08 rpmi: libplacebo338-6.338.2-alt0.2 sisyphus+341163.100.1.1 1708438285 installed <13>Oct 4 04:24:08 rpmi: libsoxr-0.1.3-alt1.1 sisyphus+317908.100.1.1 1680415073 installed <13>Oct 4 04:24:08 rpmi: libxvid-1.3.7-alt1 sisyphus+292833.100.1.1 1640949610 installed <13>Oct 4 04:24:08 rpmi: libnuma-2.0.18-alt1 sisyphus+358102.100.1.1 1727069613 installed <13>Oct 4 04:24:08 rpmi: libx265-199-3.5-alt1.1 sisyphus+277560.100.1.1 1625697230 installed <13>Oct 4 04:24:08 rpmi: libx264-164-alt1.1 sisyphus+322210.100.1.1 1685494917 installed <13>Oct 4 04:24:08 rpmi: libxshmfence-1.3.2-alt1 sisyphus+311428.400.1.1 1670577525 installed <13>Oct 4 04:24:08 rpmi: libsensors3-3.6.0-alt3 sisyphus+308579.100.1.1 1666035267 installed <13>Oct 4 04:24:08 rpmi: libpciaccess-1:0.18.1-alt1 sisyphus+343583.300.1.1 1711440789 installed <13>Oct 4 04:24:08 rpmi: libdrm-1:2.4.123-alt1 sisyphus+357330.40.3.1 1726125397 installed <13>Oct 4 04:24:08 rpmi: llvm18.1-filesystem-18.1.8-alt0.1 sisyphus+351511.100.1.1 1719305993 installed <13>Oct 4 04:24:08 rpmi: llvm18.1-polly-18.1.8-alt0.1 sisyphus+351511.100.1.1 1719305993 installed <13>Oct 4 04:24:08 rpmi: libedit3-3.1.20230828-alt1 sisyphus+330914.200.3.1 1696922743 installed <13>Oct 4 04:24:08 rpmi: llvm18.1-gold-18.1.8-alt0.1 sisyphus+351511.100.1.1 1719305993 installed <13>Oct 4 04:24:11 rpmi: llvm18.1-libs-18.1.8-alt0.1 sisyphus+351511.100.1.1 1719305993 installed <13>Oct 4 04:24:11 rpmi: libsnappy-1.1.7-alt1 sisyphus+276400.100.1.2 1625016393 installed <13>Oct 4 04:24:11 rpmi: libdatrie-0.2.13-alt1_7 sisyphus+328221.100.1.1 1693336966 installed <13>Oct 4 04:24:11 rpmi: libthai-0.1.29-alt1_6 sisyphus+328230.100.1.2 1693348044 installed <13>Oct 4 04:24:11 rpmi: libdeflate-1.21-alt1 sisyphus+354654.100.1.1 1723064482 installed <13>Oct 4 04:24:11 rpmi: libtiff5-4.4.0-alt4 sisyphus+322581.100.1.2 1686180089 installed <13>Oct 4 04:24:11 rpmi: libgdk-pixbuf-locales-2.42.12-alt1 sisyphus+348142.100.1.1 1715791856 installed <13>Oct 4 04:24:11 rpmi: libopencore-amrwb0-0.1.6-alt1 sisyphus+307923.100.1.1 1665032483 installed <13>Oct 4 04:24:11 rpmi: libopencore-amrnb0-0.1.6-alt1 sisyphus+307923.100.1.1 1665032483 installed <13>Oct 4 04:24:11 rpmi: libcodec2_1.2-1.2.0-alt1 sisyphus+340564.40.2.1 1707820763 installed <13>Oct 4 04:24:11 rpmi: gobject-introspection-1.82.0-alt1 sisyphus+357735.200.3.1 1726641712 installed <13>Oct 4 04:24:11 rpmi: libduktape207-2.7.0-alt3 sisyphus+352341.100.1.1 1720324462 installed <13>Oct 4 04:24:11 rpmi: libjson-c5-0.18-alt1 sisyphus+358387.100.1.1 1727298142 installed <13>Oct 4 04:24:11 rpmi: libCharLS2-2.0.0-alt1_3 sisyphus+346001.100.2.1 1716202266 installed <13>Oct 4 04:24:11 rpmi: libpixman-3:0.43.4-alt2 sisyphus+344164.100.1.1 1711987977 installed <13>Oct 4 04:24:11 rpmi: libmpdec3-2.5.1-alt3 sisyphus+314490.500.5.1 1675432004 installed <13>Oct 4 04:24:11 rpmi: libb2-0.98.1-alt1_1 sisyphus+291614.100.1.1 1638962877 installed <13>Oct 4 04:24:11 rpmi: flexiblas-3.4.4-alt3 sisyphus+355796.100.1.1 1724340590 installed <13>Oct 4 04:24:11 rpmi: libflexiblas.3-3.4.4-alt3 sisyphus+355796.100.1.1 1724340590 installed <13>Oct 4 04:24:11 rpmi: flexiblas-netlib-3.4.4-alt3 sisyphus+355796.100.1.1 1724340590 installed <13>Oct 4 04:24:11 rpmi: libceres4-2.2.0-alt2 sisyphus+350246.370.8.1 1724736407 installed <13>Oct 4 04:24:11 rpmi: libdevmapper-1.02.200-alt1 sisyphus+355869.100.1.1 1724444357 installed <13>Oct 4 04:24:11 rpmi: mount-2.39.2-alt1 sisyphus+327286.4500.14.1 1711486324 installed <13>Oct 4 04:24:11 rpmi: losetup-2.39.2-alt1 sisyphus+327286.4500.14.1 1711486324 installed <13>Oct 4 04:24:11 rpmi: lsblk-2.39.2-alt1 sisyphus+327286.4500.14.1 1711486324 installed <13>Oct 4 04:24:11 rpmi: dconf-profile-0.1-alt1 sisyphus+325633.340.3.1 1690415358 installed <13>Oct 4 04:24:11 rpmi: cmake-modules-3.29.3-alt1 sisyphus+348648.100.2.1 1716590540 installed <13>Oct 4 04:24:11 rpmi: libuv-1.48.0-alt2 sisyphus+357579.100.1.1 1726426171 installed <13>Oct 4 04:24:11 rpmi: librhash-1.3.5-alt3 sisyphus+286141.40.2.1 1632982456 installed <13>Oct 4 04:24:11 rpmi: libjsoncpp24-1.9.4-alt2 sisyphus+346331.200.2.1 1716448551 installed <13>Oct 4 04:24:11 rpmi: publicsuffix-list-dafsa-20240911-alt1 sisyphus+357399.100.1.1 1726160479 installed <13>Oct 4 04:24:11 rpmi: libpsl-0.21.5-alt1 sisyphus+338474.100.1.1 1705684769 installed <13>Oct 4 04:24:11 rpmi: libnghttp3.9-1.5.0-alt1 sisyphus+356415.100.1.1 1725031855 installed <13>Oct 4 04:24:11 rpmi: libnghttp2-1.63.0-alt1 sisyphus+356414.100.1.1 1725031508 installed <13>Oct 4 04:24:11 rpmi: openldap-common-2.6.8-alt1 sisyphus+351621.100.1.1 1719420449 installed <13>Oct 4 04:24:11 rpmi: libntlm-1.5-alt1 sisyphus+278100.3300.1.1 1626058899 installed <13>Oct 4 04:24:11 rpmi: libidn-1.37-alt2 sisyphus+300849.100.1.1 1653769687 installed <13>Oct 4 04:24:11 rpmi: libverto-0.3.2-alt1_1 sisyphus+321176.2200.10.2 1684803947 installed <13>Oct 4 04:24:11 rpmi: liblmdb-0.9.32-alt1 sisyphus+342426.100.1.1 1710124288 installed <13>Oct 4 04:24:11 rpmi: libkeyutils-1.6.3-alt1 sisyphus+346336.200.2.2 1716472658 installed <13>Oct 4 04:24:11 rpmi: libcom_err-1.46.4.0.5.4cda-alt1 sisyphus+283826.100.1.1 1629975345 installed <13>Oct 4 04:24:11 rpmi: rpm-macros-cmake-3.29.1-alt1 sisyphus+344518.300.3.1 1712379787 installed <13>Oct 4 04:24:11 rpmi: bubblewrap-0.10.0-alt1 sisyphus+355199.100.1.1 1723706503 installed <13>Oct 4 04:24:11 rpmi: libboost_context1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:11 rpmi: libboost_fiber1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:11 rpmi: libboost_stacktrace1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:11 rpmi: libboost_nowide1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:11 rpmi: libboost_url1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:11 rpmi: libboost_test1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:11 rpmi: libboost_serialization1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:11 rpmi: libboost_random1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:11 rpmi: libboost_iostreams1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:11 rpmi: libboost_json1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:11 rpmi: libboost_regex1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:11 rpmi: libboost_graph1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:11 rpmi: libboost_date_time1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:11 rpmi: libboost_container1.85.0-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:13 rpmi: boost-devel-headers-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:13 rpmi: boost-devel-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:13 rpmi: desktop-file-utils-0.26-alt6 sisyphus+331944.100.1.3 1697550026 installed <13>Oct 4 04:24:13 rpmi: shared-mime-info-2.4-alt1 sisyphus+334259.100.1.1 1699787316 installed <13>Oct 4 04:24:13 rpmi: gsettings-desktop-schemas-data-47.1-alt1 sisyphus+357735.300.3.1 1726641752 installed <13>Oct 4 04:24:13 rpmi: libgio-2.82.1-alt1 sisyphus+358041.200.1.1 1726905885 installed <13>Oct 4 04:24:13 rpmi: gsettings-desktop-schemas-47.1-alt1 sisyphus+357735.300.3.1 1726641752 installed <13>Oct 4 04:24:13 rpmi: libgstreamer1.0-1.24.8-alt1 sisyphus+357916.100.1.1 1726778698 installed <13>Oct 4 04:24:13 rpmi: libgdk-pixbuf-2.42.12-alt1 sisyphus+348142.100.1.1 1715791856 installed <13>Oct 4 04:24:13 rpmi: gstreamer1.0-1.24.8-alt1 sisyphus+357916.100.1.1 1726778698 installed <13>Oct 4 04:24:13 rpmi: libgstreamer1.0-gir-1.24.8-alt1 sisyphus+357916.100.1.1 1726778698 installed <13>Oct 4 04:24:13 rpmi: libglibmm-2.66.7-alt1 sisyphus+344717.100.1.1 1712649439 installed <13>Oct 4 04:24:13 rpmi: libjson-glib-1.10.0-alt1 sisyphus+357735.1200.3.1 1726642581 installed <13>Oct 4 04:24:13 rpmi: libgusb-0.4.9-alt1 sisyphus+345693.100.1.1 1713857461 installed <13>Oct 4 04:24:13 rpmi: libcolord-1.4.7-alt1.1 sisyphus+338793.100.1.1 1706039016 installed <13>Oct 4 04:24:13 rpmi: libxml++2-2.42.3-alt1 sisyphus+338062.100.1.2 1705656007 installed <13>Oct 4 04:24:13 rpmi: libffado-2.4.8-alt1.2 sisyphus+356893.2700.18.1 1725878951 installed <13>Oct 4 04:24:13 rpmi: gtk4-update-icon-cache-4.16.2-alt1 sisyphus+358216.200.1.1 1727178091 installed <13>Oct 4 04:24:13 rpmi: libjxl0.10-0.10.3-alt1 sisyphus+351709.100.1.1 1719512970 installed <13>Oct 4 04:24:13 rpmi: libjxl-pixbuf-loader-0.10.3-alt1 sisyphus+351709.100.1.1 1719512970 installed <13>Oct 4 04:24:13 rpmi: libnotify-0.8.3-alt1 sisyphus+331330.100.1.1 1696929866 installed <13>Oct 4 04:24:13 rpmi: libdconf-0.40.0-alt3 sisyphus+325650.100.1.1 1690417205 installed <13>Oct 4 04:24:14 rpmi: libnice-0.1.22-alt1 sisyphus+342031.100.1.1 1709629225 installed <13>Oct 4 04:24:14 rpmi: libmanette-0.2.9-alt1 sisyphus+357735.1700.3.1 1726642911 installed <13>Oct 4 04:24:14 rpmi: libsecret-0.21.4-alt1 sisyphus+341317.100.1.1 1708732348 installed <13>Oct 4 04:24:14 rpmi: xdg-dbus-proxy-0.1.6-alt1 sisyphus+355814.100.1.1 1724358497 installed <13>Oct 4 04:24:14 rpmi: systemd-modules-common-1:255.12-alt1 sisyphus+358180.100.1.1 1727131955 installed <13>Oct 4 04:24:14 rpmi: systemd-sysctl-common-1:255.12-alt1 sisyphus+358180.100.1.1 1727131955 installed <13>Oct 4 04:24:14 rpmi: systemd-tmpfiles-common-1:255.12-alt1 sisyphus+358180.100.1.1 1727131955 installed <13>Oct 4 04:24:14 rpmi: systemd-utils-filetriggers-1:255.12-alt1 sisyphus+358180.100.1.1 1727131955 installed <13>Oct 4 04:24:14 rpmi: libfdisk-2.39.2-alt1 sisyphus+327286.4500.14.1 1711486324 installed <13>Oct 4 04:24:14 rpmi: libX11-locales-3:1.8.10-alt1 sisyphus+353866.100.1.1 1722240771 installed <13>Oct 4 04:24:14 rpmi: libXdmcp-1.1.5-alt1 sisyphus+343583.700.1.1 1711441061 installed <13>Oct 4 04:24:14 rpmi: libxcb-1.17.0-alt1 sisyphus+345308.200.1.1 1713342004 installed <13>Oct 4 04:24:14 rpmi: libX11-3:1.8.10-alt1 sisyphus+353866.100.1.1 1722240771 installed <13>Oct 4 04:24:14 rpmi: libXext-1.3.6-alt1 sisyphus+343583.1000.1.1 1711441101 installed <13>Oct 4 04:24:14 rpmi: libXrender-0.9.11-alt1 sisyphus+308841.100.1.1 1666436130 installed <13>Oct 4 04:24:14 rpmi: libcairo-1:1.18.2-alt1 sisyphus+357195.100.1.1 1725948391 installed <13>Oct 4 04:24:14 rpmi: libXfixes-6.0.1-alt1 sisyphus+331490.300.1.1 1697023233 installed <13>Oct 4 04:24:14 rpmi: libcairo-gobject-1:1.18.2-alt1 sisyphus+357195.100.1.1 1725948391 installed <13>Oct 4 04:24:14 rpmi: libXi-1.8-alt1 sisyphus+285490.200.1.1 1632124174 installed <13>Oct 4 04:24:14 rpmi: libXtst-1.2.4-alt1 sisyphus+308663.1300.1.1 1666168495 installed <13>Oct 4 04:24:14 rpmi: libXrandr-1.5.4-alt1 sisyphus+330992.100.1.1 1696485400 installed <13>Oct 4 04:24:14 rpmi: libXxf86vm-1.1.5-alt1 sisyphus+308663.1400.1.1 1666168523 installed <13>Oct 4 04:24:14 rpmi: libGLX-mesa-4:24.2.3-alt1 sisyphus+357862.100.1.1 1726738477 installed <13>Oct 4 04:24:14 rpmi: libgbm-4:24.2.3-alt1 sisyphus+357862.100.1.1 1726738477 installed <13>Oct 4 04:24:14 rpmi: libGLX-7:1.7.0-alt1 sisyphus+330949.100.1.1 1696424893 installed <13>Oct 4 04:24:14 rpmi: libGL-7:1.7.0-alt1 sisyphus+330949.100.1.1 1696424893 installed <13>Oct 4 04:24:15 rpmi: libva-2.22.0-alt1 sisyphus+351641.100.2.1 1719561314 installed <13>Oct 4 04:24:15 rpmi: libXv-1.0.12-alt1 sisyphus+311188.600.1.1 1670233799 installed <13>Oct 4 04:24:15 rpmi: libzvbi-0.2.35-alt2 sisyphus+275416.100.1.3 1624507095 installed <13>Oct 4 04:24:15 rpmi: libXdamage-1.1.6-alt1 sisyphus+311188.300.1.1 1670233711 installed <13>Oct 4 04:24:16 rpmi: libxcb-devel-1.17.0-alt1 sisyphus+345308.200.1.1 1713342004 installed <13>Oct 4 04:24:16 rpmi: libX11-devel-3:1.8.10-alt1 sisyphus+353866.100.1.1 1722240771 installed <13>Oct 4 04:24:16 rpmi: libXrender-devel-0.9.11-alt1 sisyphus+308841.100.1.1 1666436130 installed <13>Oct 4 04:24:16 rpmi: libXext-devel-1.3.6-alt1 sisyphus+343583.1000.1.1 1711441101 installed <13>Oct 4 04:24:16 rpmi: libEGL-mesa-4:24.2.3-alt1 sisyphus+357862.100.1.1 1726738477 installed <13>Oct 4 04:24:16 rpmi: libEGL-7:1.7.0-alt1 sisyphus+330949.100.1.1 1696424893 installed <13>Oct 4 04:24:16 rpmi: libgst-plugins1.0-1.24.8-alt1 sisyphus+357916.200.1.1 1726778815 installed <13>Oct 4 04:24:16 rpmi: libgst-plugins1.0-gir-1.24.8-alt1 sisyphus+357916.200.1.1 1726778815 installed <13>Oct 4 04:24:16 rpmi: libXcursor-1.2.2-alt1 sisyphus+343583.600.1.1 1711441025 installed <13>Oct 4 04:24:16 rpmi: libharfbuzz-cairo-10.0.1-alt1 sisyphus+358317.100.1.1 1727257731 installed <13>Oct 4 04:24:16 rpmi: libXft-2.3.8-alt1 sisyphus+331490.400.1.1 1697023269 installed <13>Oct 4 04:24:16 rpmi: libpango-1.54.0-alt1 sisyphus+350796.200.1.1 1718041393 installed <13>Oct 4 04:24:16 rpmi: librsvg-1:2.59.1-alt1 sisyphus+358566.100.1.1 1727529695 installed <13>Oct 4 04:24:16 rpmi: libvdpau-1:1.5-alt1 sisyphus+298034.100.1.1 1649336822 installed <13>Oct 4 04:24:16 rpmi: libavutil58-2:6.1.2-alt1 sisyphus+354603.100.1.1 1723020852 installed <13>Oct 4 04:24:16 rpmi: libswscale7-2:6.1.2-alt1 sisyphus+354603.100.1.1 1723020852 installed <13>Oct 4 04:24:16 rpmi: libswresample4-2:6.1.2-alt1 sisyphus+354603.100.1.1 1723020852 installed <13>Oct 4 04:24:17 rpmi: libavcodec60-2:6.1.2-alt1 sisyphus+354603.100.1.1 1723020852 installed <13>Oct 4 04:24:17 rpmi: libpostproc57-2:6.1.2-alt1 sisyphus+354603.100.1.1 1723020852 installed <13>Oct 4 04:24:17 rpmi: libXinerama-1.1.5-alt1 sisyphus+309287.100.1.1 1667213208 installed <13>Oct 4 04:24:17 rpmi: xprop-1.2.5-alt1 sisyphus+279025.100.1.1 1626354198 installed <13>Oct 4 04:24:17 rpmi: libXcomposite-0.4.6-alt1 sisyphus+311188.200.1.1 1670233682 installed <13>Oct 4 04:24:17 rpmi: libcaca-0.99-alt23 sisyphus+353063.17400.30.1 1723232046 installed <13>Oct 4 04:24:17 rpmi: liblz4-1:1.9.4-alt1 sisyphus+309416.100.1.1 1667412981 installed <13>Oct 4 04:24:17 rpmi: libsystemd-1:255.12-alt1 sisyphus+358180.100.1.1 1727131955 installed <13>Oct 4 04:24:17 rpmi: libdbus-1.14.10-alt1 sisyphus+327286.5700.14.1 1711487401 installed <13>Oct 4 04:24:17 rpmi: libpulseaudio-17.0-alt2 sisyphus+339257.100.1.1 1706519226 installed <13>Oct 4 04:24:17 rpmi: libat-spi2-core-2.54.0-alt1 sisyphus+357735.600.3.1 1726642126 installed <13>Oct 4 04:24:17 rpmi: libavahi-0.8-alt4 sisyphus+344258.100.1.1 1712133856 installed <13>Oct 4 04:24:18 rpmi: libjavascriptcoregtk4-2.46.1-alt1 sisyphus+358723.100.1.1 1727725259 installed <13>Oct 4 04:24:18 rpmi: at-spi2-atk-2.54.0-alt1 sisyphus+357735.600.3.1 1726642126 installed <13>Oct 4 04:24:18 rpmi: dbus-tools-1.14.10-alt1 sisyphus+327286.5700.14.1 1711487401 installed <86>Oct 4 04:24:18 groupadd[2677120]: group added to /etc/group: name=messagebus, GID=999 <86>Oct 4 04:24:18 groupadd[2677120]: group added to /etc/gshadow: name=messagebus <86>Oct 4 04:24:18 groupadd[2677120]: new group: name=messagebus, GID=999 <86>Oct 4 04:24:18 useradd[2677134]: new user: name=messagebus, UID=999, GID=999, home=/run/dbus, shell=/dev/null, from=none <13>Oct 4 04:24:18 rpmi: dbus-1.14.10-alt1 sisyphus+327286.5700.14.1 1711487401 installed <13>Oct 4 04:24:18 rpmi: dbus-tools-gui-1.14.10-alt1 sisyphus+327286.5700.14.1 1711487401 installed <13>Oct 4 04:24:18 rpmi: dconf-0.40.0-alt3 sisyphus+325650.100.1.1 1690417205 installed <13>Oct 4 04:24:18 rpmi: libgtk+3-schemas-3.24.43-alt1 sisyphus+352627.100.1.1 1720700731 installed <13>Oct 4 04:24:18 rpmi: libzbar-0.23.93-alt1 sisyphus+350305.100.1.1 1717507821 installed <13>Oct 4 04:24:18 rpmi: libpolkit-124-alt3 sisyphus+351454.100.1.1 1719236630 installed <13>Oct 4 04:24:18 rpmi: rpm-macros-alternatives-0.5.2-alt2 sisyphus+315270.200.2.1 1676457367 installed <13>Oct 4 04:24:18 rpmi: alternatives-0.5.2-alt2 sisyphus+315270.200.2.1 1676457367 installed <13>Oct 4 04:24:18 rpmi: ca-certificates-2024.07.01-alt1 sisyphus+351897.100.1.1 1719826350 installed <13>Oct 4 04:24:18 rpmi: ca-trust-0.2.0-alt1 sisyphus+344843.100.1.1 1712743326 installed <13>Oct 4 04:24:18 rpmi: p11-kit-trust-1:0.25.5-alt1 sisyphus+352553.100.1.1 1720622573 installed <13>Oct 4 04:24:18 rpmi: libcrypto3-3.1.7-alt1 sisyphus+356755.100.1.1 1725388416 installed <13>Oct 4 04:24:18 rpmi: libssl3-3.1.7-alt1 sisyphus+356755.100.1.1 1725388416 installed <86>Oct 4 04:24:18 groupadd[2677670]: group added to /etc/group: name=_keytab, GID=998 <86>Oct 4 04:24:18 groupadd[2677670]: group added to /etc/gshadow: name=_keytab <86>Oct 4 04:24:18 groupadd[2677670]: new group: name=_keytab, GID=998 <13>Oct 4 04:24:18 rpmi: libkrb5-1.21.3-alt2 sisyphus+351857.100.1.1 1719735141 installed <13>Oct 4 04:24:18 rpmi: python3-3.12.7-alt1 sisyphus+358796.100.1.1 1727844808 installed <13>Oct 4 04:24:19 rpmi: python3-base-3.12.7-alt1 sisyphus+358796.100.1.1 1727844808 installed <13>Oct 4 04:24:19 rpmi: libkmod-32-alt1 sisyphus+357452.100.2.1 1727718007 installed <13>Oct 4 04:24:19 rpmi: systemd-utils-standalone-1:255.12-alt1 sisyphus+358180.100.1.1 1727131955 installed <13>Oct 4 04:24:19 rpmi: at-spi2-core-2.54.0-alt1 sisyphus+357735.600.3.1 1726642126 installed <13>Oct 4 04:24:19 rpmi: kmod-32-alt1 sisyphus+357452.100.2.1 1727718007 installed <13>Oct 4 04:24:19 rpmi: dmsetup-1.02.200-alt1 sisyphus+355869.100.1.1 1724444357 installed <86>Oct 4 04:24:19 groupadd[2679315]: group added to /etc/group: name=tape, GID=997 <86>Oct 4 04:24:19 groupadd[2679315]: group added to /etc/gshadow: name=tape <86>Oct 4 04:24:19 groupadd[2679315]: new group: name=tape, GID=997 <86>Oct 4 04:24:19 groupadd[2679336]: group added to /etc/group: name=dialout, GID=996 <86>Oct 4 04:24:19 groupadd[2679336]: group added to /etc/gshadow: name=dialout <86>Oct 4 04:24:19 groupadd[2679336]: new group: name=dialout, GID=996 <86>Oct 4 04:24:19 groupadd[2679349]: group added to /etc/group: name=input, GID=995 <86>Oct 4 04:24:19 groupadd[2679349]: group added to /etc/gshadow: name=input <86>Oct 4 04:24:19 groupadd[2679349]: new group: name=input, GID=995 <86>Oct 4 04:24:19 groupadd[2679362]: group added to /etc/group: name=video, GID=994 <86>Oct 4 04:24:19 groupadd[2679362]: group added to /etc/gshadow: name=video <86>Oct 4 04:24:19 groupadd[2679362]: new group: name=video, GID=994 <86>Oct 4 04:24:19 groupadd[2679371]: group added to /etc/group: name=render, GID=993 <86>Oct 4 04:24:19 groupadd[2679371]: group added to /etc/gshadow: name=render <86>Oct 4 04:24:19 groupadd[2679371]: new group: name=render, GID=993 <86>Oct 4 04:24:19 groupadd[2679386]: group added to /etc/group: name=sgx, GID=992 <86>Oct 4 04:24:19 groupadd[2679386]: group added to /etc/gshadow: name=sgx <86>Oct 4 04:24:19 groupadd[2679386]: new group: name=sgx, GID=992 <13>Oct 4 04:24:19 rpmi: udev-1:255.12-alt1 sisyphus+358180.100.1.1 1727131955 installed <86>Oct 4 04:24:20 groupadd[2680182]: group added to /etc/group: name=colord, GID=991 <86>Oct 4 04:24:20 groupadd[2680182]: group added to /etc/gshadow: name=colord <86>Oct 4 04:24:20 groupadd[2680182]: new group: name=colord, GID=991 <86>Oct 4 04:24:20 useradd[2680195]: new user: name=colord, UID=998, GID=991, home=/var/colord, shell=/dev/null, from=none <13>Oct 4 04:24:20 rpmi: colord-1.4.7-alt1.1 sisyphus+338793.100.1.1 1706039016 installed <13>Oct 4 04:24:20 rpmi: glib2-devel-2.82.1-alt1 sisyphus+358041.200.1.1 1726905885 installed <13>Oct 4 04:24:20 rpmi: libcairo-devel-1:1.18.2-alt1 sisyphus+357195.100.1.1 1725948391 installed <13>Oct 4 04:24:20 rpmi: fontconfig-devel-2.15.0-alt1 sisyphus+355771.100.2.3 1724337298 installed <13>Oct 4 04:24:20 rpmi: libfreetype-devel-2.13.3-alt1 sisyphus+355656.100.1.1 1724221064 installed <13>Oct 4 04:24:20 rpmi: libharfbuzz-devel-10.0.1-alt1 sisyphus+358317.100.1.1 1727257731 installed <13>Oct 4 04:24:20 rpmi: libpython3-3.12.7-alt1 sisyphus+358796.100.1.1 1727844808 installed <13>Oct 4 04:24:20 rpmi: python3-module-py3dephell-0.1.0-alt2 sisyphus+328191.600.5.1 1693609196 installed <13>Oct 4 04:24:20 rpmi: python3-module-pkg_resources-1:70.3.0-alt1 sisyphus+352532.100.2.1 1720689192 installed <13>Oct 4 04:24:20 rpmi: tests-for-installed-python3-pkgs-0.1.25-alt1 sisyphus+344685.100.1.1 1712595070 installed <13>Oct 4 04:24:20 rpmi: rpm-build-python3-0.1.25-alt1 sisyphus+344685.100.1.1 1712595070 installed <13>Oct 4 04:24:21 rpmi: python3-dev-3.12.7-alt1 sisyphus+358796.100.1.1 1727844808 installed <13>Oct 4 04:24:21 rpmi: libgsasl-2.2.0-alt1 sisyphus+333173.100.1.1 1698696954 installed <86>Oct 4 04:24:21 groupadd[2682899]: group added to /etc/group: name=sasl, GID=990 <86>Oct 4 04:24:21 groupadd[2682899]: group added to /etc/gshadow: name=sasl <86>Oct 4 04:24:21 groupadd[2682899]: new group: name=sasl, GID=990 <13>Oct 4 04:24:21 rpmi: libsasl2-3-2.1.28-alt2 sisyphus+343335.100.1.1 1711112544 installed <13>Oct 4 04:24:21 rpmi: libldap2-2.6.8-alt1 sisyphus+351621.100.1.1 1719420449 installed <13>Oct 4 04:24:21 rpmi: libssh-0.10.6-alt1 sisyphus+338050.100.1.2 1705656358 installed <13>Oct 4 04:24:21 rpmi: libcups-2.4.10-alt2 sisyphus+354418.100.2.1 1722957600 installed <13>Oct 4 04:24:22 rpmi: libgtk+3-3.24.43-alt1 sisyphus+352627.100.1.1 1720700731 installed <13>Oct 4 04:24:22 rpmi: libneon-0.32.5-alt1 sisyphus+337867.100.1.2 1705641062 installed <13>Oct 4 04:24:22 rpmi: librabbitmq-c4-0.14.0-alt1 sisyphus+343592.100.1.1 1711443826 installed <13>Oct 4 04:24:22 rpmi: libavformat60-2:6.1.2-alt1 sisyphus+354603.100.1.1 1723020852 installed <13>Oct 4 04:24:22 rpmi: libavfilter9-2:6.1.2-alt1 sisyphus+354603.100.1.1 1723020852 installed <13>Oct 4 04:24:22 rpmi: gst-libav-1.24.8-alt1 sisyphus+357916.700.1.1 1726779289 installed <13>Oct 4 04:24:22 rpmi: libevent2.1-2.1.12-alt1 sisyphus+324359.3500.11.1 1689364661 installed <13>Oct 4 04:24:22 rpmi: libcamera-1:0.3.2-alt1 sisyphus+358497.100.1.1 1727451862 installed <13>Oct 4 04:24:22 rpmi: libshout2-2.4.6-alt2 sisyphus+326035.1600.1.1 1690667383 installed <13>Oct 4 04:24:23 rpmi: gst-plugins-good1.0-1.24.8-alt1 sisyphus+357916.300.1.1 1726778952 installed <13>Oct 4 04:24:23 rpmi: libarchive13-3.7.5-alt2 sisyphus+358189.100.1.1 1727162763 installed <13>Oct 4 04:24:23 rpmi: libssh2-1.11.0-alt2 sisyphus+339356.100.1.1 1706593137 installed <13>Oct 4 04:24:23 rpmi: libcurl-8.10.0-alt1 sisyphus+357271.100.1.1 1726044759 installed <13>Oct 4 04:24:23 rpmi: libwxBase3.2-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Oct 4 04:24:23 rpmi: libwxGTK3.2-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Oct 4 04:24:23 rpmi: libwxGTK3.2-gl-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Oct 4 04:24:23 rpmi: libwxGTK3.2-media-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Oct 4 04:24:23 rpmi: libwxGTK3.2-sound_sdlu-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Oct 4 04:24:23 rpmi: libproxy-0.5.8-alt1 sisyphus+353527.100.1.1 1721814170 installed <13>Oct 4 04:24:23 rpmi: glib-networking-2.80.0-alt1 sisyphus+342825.100.1.1 1710537082 installed <13>Oct 4 04:24:24 rpmi: libsoup-2.74.3-alt1.1 sisyphus+318260.100.1.1 1680994685 installed <13>Oct 4 04:24:24 rpmi: libraptor2-2.0.16-alt1 sisyphus+337177.100.1.1 1703495659 installed <13>Oct 4 04:24:24 rpmi: liblrdf-0.6.1-alt1 sisyphus+278205.100.1.1 1626077040 installed <13>Oct 4 04:24:24 rpmi: gdcm-3.0.21-alt1 sisyphus+348079.100.1.1 1715743016 installed <13>Oct 4 04:24:26 rpmi: libopencv4.10-1:4.10.0-alt2 sisyphus+350246.474.8.1 1724737246 installed <13>Oct 4 04:24:26 rpmi: alsa-ucm-conf-1.2.12-alt1 sisyphus+352670.100.1.1 1720712327 installed <13>Oct 4 04:24:26 rpmi: alsa-topology-conf-1.2.5.1-alt1 sisyphus+274777.100.1.1 1624089141 installed <13>Oct 4 04:24:26 rpmi: libalsa-1:1.2.12-alt1 sisyphus+352670.200.1.1 1720712401 installed <13>Oct 4 04:24:27 rpmi: flite-2.2-alt2 sisyphus+329889.100.1.1 1695115194 installed <13>Oct 4 04:24:27 rpmi: libcanberra-0.30-alt3 sisyphus+275093.100.2.3 1624562350 installed <13>Oct 4 04:24:28 rpmi: pipewire-libs-1.2.5-alt1 sisyphus+358497.200.1.2 1727453243 installed <13>Oct 4 04:24:28 rpmi: pipewire-jack-libs-1.2.5-alt1 sisyphus+358497.200.1.2 1727453243 installed <13>Oct 4 04:24:28 rpmi: libfluidsynth-2.3.6-alt1 sisyphus+354308.200.1.1 1722736812 installed <13>Oct 4 04:24:28 rpmi: libSDL-1.2.14-alt10 sisyphus+346015.200.2.1 1716212609 installed <13>Oct 4 04:24:28 rpmi: libmjpegtools2.1-2.2.1-alt2 sisyphus+332812.400.2.1 1698405785 installed <13>Oct 4 04:24:28 rpmi: gst-plugins-bad1.0-1.24.8-alt1 sisyphus+357916.400.1.1 1726779141 installed <13>Oct 4 04:24:28 rpmi: gst-plugins-base1.0-1.24.8-alt1 sisyphus+357916.200.1.1 1726778815 installed <13>Oct 4 04:24:30 rpmi: libwebkit2gtk-2.46.1-alt1 sisyphus+358723.100.1.1 1727725259 installed <13>Oct 4 04:24:30 rpmi: libwxGTK3.2-webview-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Oct 4 04:24:30 rpmi: libwxBase3.2-devel-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Oct 4 04:24:30 rpmi: libwxGTK3.2-devel-3.2.6-alt1 sisyphus+357167.100.2.1 1725965118 installed <13>Oct 4 04:24:31 rpmi: cmake-3.29.3-alt1 sisyphus+348648.100.2.1 1716590540 installed <13>Oct 4 04:24:31 rpmi: python3-module-setuptools-1:70.3.0-alt1 sisyphus+352532.100.2.1 1720689192 installed <13>Oct 4 04:24:31 rpmi: boost-filesystem-devel-1:1.85.0-alt3 sisyphus+350371.100.2.1 1717654829 installed <13>Oct 4 04:24:31 rpmi: gcc-c++-13-alt1 sisyphus+323337.300.1.1 1687267966 installed <13>Oct 4 04:24:31 rpmi: swig-1:4.1.1-alt8 sisyphus+339194.200.2.1 1706442289 installed <13>Oct 4 04:24:31 rpmi: rapidjson-devel-1.1.0-alt8.git473553bd sisyphus+331050.100.2.2 1696521943 installed <13>Oct 4 04:24:31 rpmi: libxml2-devel-1:2.12.9-alt1 sisyphus+355784.100.1.1 1724333686 installed <13>Oct 4 04:24:31 rpmi: eigen3-3.4.0-alt2.1 sisyphus+340675.200.1.1 1707908237 installed Building target platforms: x86_64 Building for target x86_64 Wrote: /usr/src/in/nosrpm/openbabel-3.1.1-alt4.1.nosrc.rpm (w1.gzdio) Installing openbabel-3.1.1-alt4.1.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.71853 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf openbabel-3.1.1 + echo 'Source #0 (openbabel-3.1.1.tar):' Source #0 (openbabel-3.1.1.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/openbabel-3.1.1.tar + cd openbabel-3.1.1 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #0 (openbabel-3.1.1-alt4.1.patch):' Patch #0 (openbabel-3.1.1-alt4.1.patch): + /usr/bin/patch -p1 patching file .gear/rules patching file .gear/tags/2806ab0ef7445a427f7cc4706455d7988262adcc patching file .gear/tags/list patching file .github/config.yml patching file .github/workflows/build_cmake.yml patching file .github/workflows/misspell-fixer.yml patching file CMakeLists.txt patching file OpenBabel3Config.cmake.in patching file OpenBabel3ConfigVersion.cmake.in patching file cmake/modules/Findcoordgen.cmake patching file data/CMakeLists.txt patching file data/atomtyp.h patching file data/bondtyp.h patching file data/genheaders.sh patching file data/logp.txt patching file data/phmodeldata.h patching file data/resdata.h patching file data/splash.png patching file data/torlib.h patching file data/types.h patching file doc/examples/obconformersearch_default.cpp patching file doc/images/SPshapes.png patching file doc/images/cistrans.png patching file doc/images/energyconformerscore.png patching file doc/images/getcisref.png patching file doc/images/gettransref.png patching file doc/images/rmsdconformerscore.png patching file doc/images/spectrophore_cage.png patching file doc/images/squareplanar.png patching file doc/images/tetrahedral.png patching file doc/images/tetranonplanar.png patching file doc/images/tetraplanar.png patching file doc/splash.png patching file include/openbabel/conformersearch.h patching file include/openbabel/forcefield.h patching file include/openbabel/generic.h patching file include/openbabel/mol.h patching file include/openbabel/obutil.h patching file include/openbabel/residue.h patching file include/openbabel/rotor.h patching file include/openbabel/spectrophore.h patching file include/openbabel/stereo/stereo.h patching file include/openbabel/stereo/tetraplanar.h patching file include/openbabel/typer.h patching file openbabel.spec patching file openbabel.watch patching file scripts/CMakeLists.txt patching file scripts/openbabel-R.i patching file scripts/openbabel-csharp.i patching file scripts/openbabel-java.i patching file scripts/openbabel-mono.i patching file scripts/openbabel-perl.i patching file scripts/openbabel-php.i patching file scripts/openbabel-python.i patching file scripts/openbabel-ruby.i patching file scripts/python/openbabel/pybel.py patching file scripts/python/setup.py patching file src/CMakeLists.txt patching file src/conformersearch.cpp patching file src/data.cpp patching file src/doxygen_pages.cpp patching file src/fingerprints/finger3.cpp patching file src/forcefields/forcefielduff.cpp patching file src/formats/MCDLformat.cpp patching file src/formats/cifformat.cpp patching file src/formats/copyformat.cpp patching file src/formats/fastsearchformat.cpp patching file src/formats/fingerprintformat.cpp patching file src/formats/gaussformat.cpp patching file src/formats/getinchi.cpp patching file src/formats/pngformat.cpp patching file src/formats/smilesformat.cpp patching file src/formats/svgformat.cpp patching file src/formats/textformat.cpp patching file src/formats/xtcformat.cpp patching file src/formats/yasaraformat.cpp patching file src/kekulize.cpp patching file src/math/spacegroup.cpp patching file src/mcdlutil.cpp patching file src/mol.cpp patching file src/obiter.cpp patching file src/obmolecformat.cpp patching file src/ops/conformer.cpp patching file src/parsmart.cpp patching file src/residue.cpp patching file src/spectrophore.cpp patching file src/tautomer.cpp patching file src/typer.cpp patching file test/CMakeLists.txt patching file test/cifspacegrouptest.cpp patching file test/files/alias.png patching file test/files/aromatics.png patching file test/fuzz/fuzz_obconversion.cpp patching file test/iterators.cpp patching file test/residue.cpp patching file test/smartstest.cpp patching file test/testbindings.py patching file test/testdistgeom.py patching file tools/obrms.cpp patching file tools/obthermo.cpp + sed -i 's/dist\(-packages\)/site\1/' scripts/CMakeLists.txt + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.81063 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd openbabel-3.1.1 + mkdir -p x86_64-alt-linux + cmake -DCMAKE_SKIP_INSTALL_RPATH:BOOL=yes '-DCMAKE_C_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto' '-DCMAKE_CXX_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto' '-DCMAKE_Fortran_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto' -DCMAKE_INSTALL_PREFIX=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_DESTINATION=lib64 -DLIB_SUFFIX=64 -S . -B x86_64-alt-linux -DWITH_MAEPARSER:BOOL=OFF -DWITH_COORDGEN:BOOL=OFF -DBUILD_GUI:BOOL=ON -DRUN_SWIG=ON -DPYTHON_BINDINGS:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.2.1 -- The CXX compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Using included inchi library. Package liblzma was not found in the pkg-config search path. Perhaps you should add the directory containing `liblzma.pc' to the PKG_CONFIG_PATH environment variable Package 'liblzma', required by 'libxml-2.0', not found Package liblzma was not found in the pkg-config search path. Perhaps you should add the directory containing `liblzma.pc' to the PKG_CONFIG_PATH environment variable Package 'liblzma', required by 'libxml-2.0', not found Package liblzma was not found in the pkg-config search path. Perhaps you should add the directory containing `liblzma.pc' to the PKG_CONFIG_PATH environment variable Package 'liblzma', required by 'libxml-2.0', not found Package liblzma was not found in the pkg-config search path. Perhaps you should add the directory containing `liblzma.pc' to the PKG_CONFIG_PATH environment variable Package 'liblzma', required by 'libxml-2.0', not found -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.12.9") -- Found ZLIB: /usr/lib64/libz.so (found version "1.3.1") -- Found wxWidgets: -L/usr/lib64;-pthread;;;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.6") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success CMake Warning (dev) at CMakeLists.txt:299 (exec_program): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success -- Use std::shared_ptr in memory -- Could NOT find Boost: missing: program_options (found /usr/lib64/cmake/Boost-1.85.0/BoostConfig.cmake (found version "1.85.0")) -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found Boost: /usr/lib64/cmake/Boost-1.85.0/BoostConfig.cmake (found version "1.85.0") found components: filesystem iostreams unit_test_framework -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include -- Checking for module 'cairo' -- Found cairo, version 1.18.2 Package bzip2 was not found in the pkg-config search path. Perhaps you should add the directory containing `bzip2.pc' to the PKG_CONFIG_PATH environment variable Package 'bzip2', required by 'freetype2', not found Package bzip2 was not found in the pkg-config search path. Perhaps you should add the directory containing `bzip2.pc' to the PKG_CONFIG_PATH environment variable Package 'bzip2', required by 'freetype2', not found Package bzip2 was not found in the pkg-config search path. Perhaps you should add the directory containing `bzip2.pc' to the PKG_CONFIG_PATH environment variable Package 'bzip2', required by 'freetype2', not found Package bzip2 was not found in the pkg-config search path. Perhaps you should add the directory containing `bzip2.pc' to the PKG_CONFIG_PATH environment variable Package 'bzip2', required by 'freetype2', not found -- Found Cairo: /usr/lib64/libcairo.so -- Cairo found. PNG output will be supported. -- Found Boost: /usr/lib64/cmake/Boost-1.85.0/BoostConfig.cmake (found suitable version "1.85.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Could NOT find Boost: missing: program_options (found /usr/lib64/cmake/Boost-1.85.0/BoostConfig.cmake (found version "1.85.0")) -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built Problem opening /proc/meminfo CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): test/CMakeLists.txt:226 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found version "3.12.7") CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): test/CMakeLists.txt:250 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found SWIG: /usr/bin/swig (found version "4.1.1") -- Found SWIG: /usr/bin/swig (found suitable version "4.1.1", minimum required is "2.0") CMake Warning (dev) at scripts/CMakeLists.txt:45 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at scripts/CMakeLists.txt:54 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonLibs: /usr/lib64/libpython3.12.so (found version "3.12.7") -- Python bindings will be compiled -- Configuring done (6.3s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS INCLUDE_INSTALL_DIR LIB_DESTINATION SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux + cmake --build x86_64-alt-linux --verbose --parallel 8 Change Dir: '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j8 gmake: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/cmake -S/usr/src/RPM/BUILD/openbabel-3.1.1 -B/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux --check-build-system CMakeFiles/Makefile.cmake 0 gmake: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/cmake -E cmake_progress_start /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/CMakeFiles /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux//CMakeFiles/progress.marks gmake: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f CMakeFiles/Makefile2 all /usr/bin/gmake -f data/CMakeFiles/data_headers.dir/build.make data/CMakeFiles/data_headers.dir/depend /usr/bin/gmake -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/data /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data/CMakeFiles/data_headers.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f data/CMakeFiles/data_headers.dir/build.make data/CMakeFiles/data_headers.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/libinchi /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make 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-I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.c.o -MF CMakeFiles/inchi.dir/ichicano.c.o.d -o CMakeFiles/inchi.dir/ichicano.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichicano.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL 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-I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichisort.c.o -MF CMakeFiles/inchi.dir/ichisort.c.o.d -o CMakeFiles/inchi.dir/ichisort.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichisort.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/libinchi && /usr/bin/cc 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-I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.c.o -MF CMakeFiles/inchi.dir/ikey_base26.c.o.d -o CMakeFiles/inchi.dir/ikey_base26.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ikey_base26.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL 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src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.c.o -MF CMakeFiles/inchi.dir/ikey_dll.c.o.d -o CMakeFiles/inchi.dir/ikey_dll.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ikey_dll.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichister.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo 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-I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.c.o -MF CMakeFiles/inchi.dir/inchi_dll_a.c.o.d -o CMakeFiles/inchi.dir/inchi_dll_a.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/inchi_dll_a.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/libinchi && 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-DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/alias.cpp.o -MF CMakeFiles/openbabel.dir/alias.cpp.o.d -o CMakeFiles/openbabel.dir/alias.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/alias.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/alias.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 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'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprint.cpp:21: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF CMakeFiles/openbabel.dir/builder.cpp.o.d -o CMakeFiles/openbabel.dir/builder.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/builder.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/builder.cpp:31: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/builder.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/builder.cpp:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/grid.cpp.o -MF CMakeFiles/openbabel.dir/grid.cpp.o.d -o CMakeFiles/openbabel.dir/grid.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/grid.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/grid.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:55:18: warning: 'virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)' was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:123:10: note: by 'void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)' 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/griddata.cpp.o -MF CMakeFiles/openbabel.dir/griddata.cpp.o.d -o CMakeFiles/openbabel.dir/griddata.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/griddata.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/generic.h:31, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/griddata.cpp:25: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:228:32: warning: 'virtual const std::string& OpenBabel::OBGenericData::GetValue() const' was hidden [-Woverloaded-virtual=] 228 | virtual const std::string &GetValue() const | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:76:12: note: by 'OpenBabel::OBGridData::GetValue' 76 | double GetValue (vector3 pos) const; | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/griddata.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:55:18: warning: 'virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)' was hidden [-Woverloaded-virtual=] 55 | virtual void 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-I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data.cpp.o -MF CMakeFiles/openbabel.dir/data.cpp.o.d -o CMakeFiles/openbabel.dir/data.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/data.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/kekulize.cpp.o -MF CMakeFiles/openbabel.dir/kekulize.cpp.o.d -o CMakeFiles/openbabel.dir/kekulize.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/kekulize.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/kekulize.cpp: In function 'bool OpenBabel::NeedsDoubleBond(OBAtom*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/kekulize.cpp:94:15: warning: unused variable 'nbr' [-Wunused-variable] 94 | OBAtom *nbr = bond->GetNbrAtom(atom); | ^~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory 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/usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/generic.cpp.o -MF CMakeFiles/openbabel.dir/generic.cpp.o.d -o CMakeFiles/openbabel.dir/generic.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/generic.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/molchrg.cpp.o -MF CMakeFiles/openbabel.dir/molchrg.cpp.o.d -o CMakeFiles/openbabel.dir/molchrg.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/molchrg.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/forcefield.cpp.o -MF CMakeFiles/openbabel.dir/forcefield.cpp.o.d -o CMakeFiles/openbabel.dir/forcefield.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/set:62, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:34: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:55:18: warning: 'virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)' was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/grid.h:123:10: note: by 'void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)' 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:26: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:228:32: warning: 'virtual const std::string& OpenBabel::OBGenericData::GetValue() const' was hidden [-Woverloaded-virtual=] 228 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:35: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:76:12: note: by 'OpenBabel::OBGridData::GetValue' 76 | double GetValue (vector3 pos) const; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:391:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 391 | if (_ignoreAtom == a) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:393:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 393 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:403:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 403 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:413:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 413 | if (_ignoreAtom == d) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintType(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:665:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 665 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'double OpenBabel::OBFFConstraints::GetConstraintValue(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:673:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 673 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:681:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 681 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:689:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 689 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:697:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 697 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:705:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 705 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBForceField::FastRotorSearch(bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1353:34: warning: array subscript has type 'char' [-Wchar-subscripts] 1353 | num_permutations = factorial[num_rotors_to_permute]; | ^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1357:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1357 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1370 | for (int i=0; i >&, std::vector, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1571:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 1571 | if (j == rotorKey[i]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1590:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 1590 | if (j == rotorKey[i]) gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/oberror.cpp.o -MF CMakeFiles/openbabel.dir/oberror.cpp.o.d -o CMakeFiles/openbabel.dir/oberror.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/oberror.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obfunctions.cpp.o -MF CMakeFiles/openbabel.dir/obfunctions.cpp.o.d -o CMakeFiles/openbabel.dir/obfunctions.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obfunctions.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/op.cpp.o -MF CMakeFiles/openbabel.dir/op.cpp.o.d -o CMakeFiles/openbabel.dir/op.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/op.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/op.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obutil.cpp.o -MF CMakeFiles/openbabel.dir/obutil.cpp.o.d -o CMakeFiles/openbabel.dir/obutil.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obutil.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o CMakeFiles/openbabel.dir/obconversion.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp:48: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/patty.cpp.o -MF CMakeFiles/openbabel.dir/patty.cpp.o.d -o CMakeFiles/openbabel.dir/patty.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/patty.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obiter.cpp.o -MF CMakeFiles/openbabel.dir/obiter.cpp.o.d -o CMakeFiles/openbabel.dir/obiter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder] 375 | OBMol *_parent; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder] 374 | OBRing *_ptr; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp:1022:3: warning: when initialized here [-Wreorder] 1022 | OBMolRingIter::OBMolRingIter(OBMol *mol): _parent(mol), _ptr(nullptr) | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder] 375 | OBMol *_parent; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder] 374 | OBRing *_ptr; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp:1032:3: warning: when initialized here [-Wreorder] 1032 | OBMolRingIter::OBMolRingIter(OBMol &mol): _parent(&mol), _ptr(nullptr) | ^~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rand.cpp.o -MF CMakeFiles/openbabel.dir/rand.cpp.o.d -o CMakeFiles/openbabel.dir/rand.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/rand.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/rand.cpp:428:15: warning: 'void OpenBabel::GenerateSequence(unsigned int, unsigned int, unsigned int, unsigned int)' defined but not used [-Wunused-function] 428 | static void GenerateSequence( unsigned int p, unsigned int m, | ^~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/parsmart.cpp.o -MF CMakeFiles/openbabel.dir/parsmart.cpp.o.d -o CMakeFiles/openbabel.dir/parsmart.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp: In function 'int OpenBabel::CreateAtom(Pattern*, AtomExpr*, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp:446:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] 446 | int index,size; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp: In function 'int OpenBabel::CreateBond(Pattern*, BondExpr*, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp:478:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] 478 | int index,size; | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/plugin.cpp.o -MF CMakeFiles/openbabel.dir/plugin.cpp.o.d -o CMakeFiles/openbabel.dir/plugin.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/plugin.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/plugin.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/phmodel.cpp.o -MF CMakeFiles/openbabel.dir/phmodel.cpp.o.d -o CMakeFiles/openbabel.dir/phmodel.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/phmodel.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/query.cpp.o -MF CMakeFiles/openbabel.dir/query.cpp.o.d -o CMakeFiles/openbabel.dir/query.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/query.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/query.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/bond.h:31, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/query.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/query.cpp:25: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:423:5: warning: multi-line comment [-Wcomment] 423 | // / \ | ^ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TSimpleMolecule::threeBondResolve(int, int, double&, double&, OpenBabel::neighbourlist*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:968:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 968 | for (i=0; i&, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:1471:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1471 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1478 | } while (k&, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2009:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2009 | for (j=0; j0) atDef=atDef+1; | ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2019:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2019 | if (cN>=0) if (maxAtDef==atomCycle[cN].size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2034:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2034 | for (j=1; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2040 | for (j=0;currNumDef < atomClean && j&, std::vector, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2107:98: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2107 | if (baseCycle>0) for (i=0; i, std::vector, int, int&, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2238:67: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2238 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2240 | for (k=0; k::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2264 | for (j=1; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2575 | if ((nb + i) > dsATN.size()) nb=dsATN.size()-i; // Check added to avoid segfault below, see issue #1851 | ~~~~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::flipSmall(int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2985:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2985 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3024 | for (i=0; i, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3103 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3103:75: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3103 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3105:26: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3105 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3105:75: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3105 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'bool OpenBabel::compareAtoms(int, int, std::vector*>)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3127:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3127 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3127:63: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3127 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::makeEquivalentList(std::vector&, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3291:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3291 | for (j=0; jsize(); j++) (*lL)[i]=0; | ~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3299:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3299 | for (i=0; i*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3309 | for (int i=0; i&, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3325:13: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const __gnu_cxx::__alloc_traits, int>::value_type' {aka 'const int'} [-Wsign-compare] 3325 | if (l <= maxValues[i]) { /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'int OpenBabel::TSimpleMolecule::correctOverlapped()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3374:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3374 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3427 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3437 | for (i=0; i*, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3540:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 3540 | for (i=0; isize(); i++) if (i != index) { | ~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4216:19: warning: variable 'nBondsOld' set but not used [-Wunused-but-set-variable] 4216 | int nAtomsOld,nBondsOld,naDef1,naDef,i; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4217:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4217:15: warning: variable 'test1' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4217:21: warning: variable 'test2' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4219:40: warning: variable 'xCenter' set but not used [-Wunused-but-set-variable] 4219 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4219:48: warning: variable 'yCenter' set but not used [-Wunused-but-set-variable] 4219 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'OpenBabel::TEditedMolecule* OpenBabel::TEditedMolecule::extractFragment(int, std::vector*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4410:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4410 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4410:71: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4410 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4415:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4415 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4418 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4591 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4596 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4601 | for (i=0; i*, std::vector*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4636:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 4636 | if (qEnumerator->size() != nAtoms()) qEnumerator->resize(nAtoms()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4637:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4637 | for (i=0; isize(); i++) (*qEnumerator)[i]=i; | ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4666:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4666 | for (j=0; jsize(); j++) { | ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TEditedMolecule::fragmentSearch(OpenBabel::TEditedMolecule*, std::vector*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4853:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4853 | if (molecule1->listarSize()>aSTested.size()) aSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4854:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4854 | if (molecule1->listarSize()>bSTested.size()) bSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4855:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4855 | if (molecule1->listarSize()>queryQHydr.size()) queryQHydr.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4856:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4856 | if (molecule1->listarSize()>queryAQTested.size()) queryAQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4857:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4857 | if (molecule1->listarSize()>queryBQTested.size()) queryBQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4858:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4858 | if (molecule1->listarSize()>queryCurrentAssignment.size()) queryCurrentAssignment.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4859:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4859 | if (this->listarSize()>queryAQTested.size()) queryAQTested.resize(this->listarSize()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5032:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; | ^ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4840:9: warning: variable 'cycleNumber' set but not used [-Wunused-but-set-variable] 4840 | int cycleNumber; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TemplateRedraw::internalBondsPresent(OpenBabel::TEditedMolecule*, OpenBabel::TSimpleMolecule*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5201:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 5201 | for (i=0; inAtoms(); i++) aList[mQuery->queryAQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5202:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 5202 | for (i=0; inBonds(); i++) bList[mQuery->queryBQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TemplateRedraw::rotateBondVertically(OpenBabel::TSimpleMolecule*, std::vector, int, double, double, double&, double&, double&, double&, double&, double&, int&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5232:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5232 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5277 | for (i=0; i*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5311:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5311 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5328:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5328 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5358 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5368 | for (i=0; i*, OpenBabel::PartFragmentDefinition&, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5399:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5399 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5412:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5412 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5428:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5428 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'int OpenBabel::TemplateRedraw::coordinatesPrepare(OpenBabel::TEditedMolecule&, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5667:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5667 | for (i=kk; ifragmentSearch(&sm,nullptr)) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5715:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5715 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5718 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5726 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5798 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5828 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5894 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5906 | for (frCount=0; frCount::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5922 | for (frCount=0; frCount::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5945 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 5960 | for (frCount=0; frCount::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6000 | for (i=0;i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6007 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6026 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6034 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6035 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6036 | for (i=0; i::size_type' {aka 'const long unsigned int'} [-Wsign-compare] 6358 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6359:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6359 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'std::string OpenBabel::getAtomMCDL(OBMol*, int, std::vector, std::vector, std::vector, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6546:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6546 | for (j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6591 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6593:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6593 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) n++; | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6599:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6599 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) { | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6609:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6609 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-1; | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6612:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6612 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-2; | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6623:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6623 | if (k == 1) for (i=0; i >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6632 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6632 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6642 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'std::string OpenBabel::getBondMCDL(OBMol*, int, int, std::vector, std::vector, int (*)[4], std::vector, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6843:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6843 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6845:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6845 | for (j=i+1; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6850 | for (j=i+1; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6864 | for (j=i+1; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6872 | for (j=i+1; j >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6877 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6877 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6887 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6680:26: warning: variable 'n4' set but not used [-Wunused-but-set-variable] 6680 | int i,j,n,m,n1,n2,n3,n4,an1,an2,an3,an4,k; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'void OpenBabel::implementAtomStereo(std::vector&, std::vector&, std::vector&, std::vector, std::vector, int, int, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6960:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6960 | if (n1 < (astereo.length()-1)) astereo=astereo.substr(n1+1); else astereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'void OpenBabel::implementBondStereo(std::vector, std::vector, std::vector&, std::vector&, int, int, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7024:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7024 | if (n1 < (bstereo.length()-1)) bstereo=bstereo.substr(n1+1); else bstereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'int OpenBabel::groupRedraw(OBMol*, int, int, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7159:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7159 | for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7167 | for (int i=0; i&, int&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7209:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7209 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7212:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7212 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7233:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7233 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7236:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 7236 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -MF CMakeFiles/openbabel.dir/pointgroup.cpp.o.d -o CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::establish_pairs(SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:267:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 267 | if( elem->transform[i] >= _mol->NumAtoms() ){ /* No symmetric atom yet */ | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::check_transform_order(SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:311:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 311 | if( elem->transform[i] == i ) /* Identity transform is Ok for any order */ | ~~~~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:315:34: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 315 | if( elem->transform[j] == i ) | ~~~~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::same_transform(SYMMETRY_ELEMENT*, SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:358:31: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 358 | if( b->transform[j] != i ) | ~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'OpenBabel::OBPointGroup::Symbol OpenBabel::OBPointGroup::IdentifyPointGroupSymbol(double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:1958:37: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1958 | || d->NormalAxesCounts[2] >= maxAxis) { // Are there the perpendicular C2 axes? | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:1961:28: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1961 | if (d->PlanesCount >= maxAxis + 1) { // Likely Dnh | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:1986:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1986 | else if (d->PlanesCount == maxAxis) { // Likely Dnd | ~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2088:29: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 2088 | else if (d->PlanesCount >= maxAxis) { // Cnv | ~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'void OpenBabel::OBPointGroup::Symmetrize(OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2175:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 2175 | for (unsigned int i = 0; i < d->PlanesCount; i++) | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2182:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 2182 | for (unsigned int i = 0; i < d->NormalAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2189:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 2189 | for (unsigned int i = 0; i < d->ImproperAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -MF CMakeFiles/openbabel.dir/reactionfacade.cpp.o.d -o CMakeFiles/openbabel.dir/reactionfacade.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/reactionfacade.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/reactionfacade.cpp: In member function 'void OpenBabel::OBReactionFacadePrivate::FindComponents()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/reactionfacade.cpp:122:15: warning: unused variable 'atm' [-Wunused-variable] 122 | OBAtom* atm = &*atom; | ^~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/residue.cpp.o -MF CMakeFiles/openbabel.dir/residue.cpp.o.d -o CMakeFiles/openbabel.dir/residue.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/residue.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mol.cpp.o -MF CMakeFiles/openbabel.dir/mol.cpp.o.d -o CMakeFiles/openbabel.dir/mol.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp: In member function 'unsigned int OpenBabel::OBMol::NumHvyAtoms() const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp:809:36: warning: unnecessary parentheses in declaration of 'i' [-Wparentheses] 809 | vector::const_iterator(i); | ^~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp:809:36: note: remove parentheses 809 | vector::const_iterator(i); | ^~~ | - - /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp: In member function 'unsigned int OpenBabel::OBMol::GetTotalSpinMultiplicity()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp:1221:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1221 | if (chg % 2 != unpaired_electrons %2) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/spectrophore.cpp.o -MF CMakeFiles/openbabel.dir/spectrophore.cpp.o.d -o CMakeFiles/openbabel.dir/spectrophore.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/spectrophore.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotamer.cpp.o -MF CMakeFiles/openbabel.dir/rotamer.cpp.o.d -o CMakeFiles/openbabel.dir/rotamer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp: In member function 'void OpenBabel::OBRotamerList::AddRotamer(std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:410:11: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 410 | while (angle < 0.0) | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:412:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 412 | while (angle > 360.0) | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp: In member function 'bool OpenBabel::OBRotamerList::SetCurrentCoordinates(OpenBabel::OBMol&, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:543:11: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 543 | while (angle < 0.0) | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:545:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 545 | while (angle > 360.0) | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tokenst.cpp.o -MF CMakeFiles/openbabel.dir/tokenst.cpp.o.d -o CMakeFiles/openbabel.dir/tokenst.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/tokenst.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/ring.cpp.o -MF CMakeFiles/openbabel.dir/ring.cpp.o.d -o CMakeFiles/openbabel.dir/ring.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ring.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tautomer.cpp.o -MF CMakeFiles/openbabel.dir/tautomer.cpp.o.d -o CMakeFiles/openbabel.dir/tautomer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/tautomer.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/tautomer.cpp:26: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/tautomer.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/tautomer.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/transform.cpp.o -MF CMakeFiles/openbabel.dir/transform.cpp.o.d -o CMakeFiles/openbabel.dir/transform.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/transform.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/transform.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/transform.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -MF CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o.d -o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/dlhandler_unix.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF CMakeFiles/openbabel.dir/typer.cpp.o.d -o CMakeFiles/openbabel.dir/typer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/typer.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON 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/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:286:28: warning: 'virtual const char* OpenBabel::OBBase::GetTitle(bool) const' was hidden [-Woverloaded-virtual=] 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/reaction.h:99:15: note: by 'std::string OpenBabel::OBReaction::GetTitle() const' 99 | std::string GetTitle() const { return _title; } | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:287:21: warning: 'virtual void OpenBabel::OBBase::SetTitle(const char*)' was hidden [-Woverloaded-virtual=] 287 | virtual void SetTitle(const char *) {} | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/reaction.h:101:8: note: by 'void OpenBabel::OBReaction::SetTitle(const std::string&)' 101 | void SetTitle(const std::string& title) { _title=title; } | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -MF CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o.d -o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/matrix3x3.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -MF CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o.d -o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h: In constructor 'OpenBabel::SVGPainter::SVGPainter(std::ostream&, std::set >*, bool, double, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:77:11: warning: 'OpenBabel::SVGPainter::m_fontPointSize' will be initialized after [-Wreorder] 77 | int m_fontPointSize; | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:75:12: warning: 'bool OpenBabel::SVGPainter::m_isFillcolor' [-Wreorder] 75 | bool 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src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o -MF CMakeFiles/openbabel.dir/math/transform3d.cpp.o.d -o CMakeFiles/openbabel.dir/math/transform3d.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/transform3d.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 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-D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/tetranonplanar.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -MF CMakeFiles/openbabel.dir/depict/depict.cpp.o.d -o CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp: In function 'unsigned int OpenBabel::GetAtomSymClass(OBAtom*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:284:11: warning: unused variable 'nclasses' [-Wunused-variable] 284 | int nclasses = end_pos - copy_sym.begin(); | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp: In member function 'virtual void OpenBabel::OBDepictPrivate::DrawAtomLabel(const std::string&, int, const OpenBabel::vector3&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1024:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable] 1024 | OBFontMetrics metrics = painter->GetFontMetrics(str); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1029:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable] 1029 | OBFontMetrics metrics = painter->GetFontMetrics(subscript); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp: In member function 'void OpenBabel::OBDepictPrivateBallAndStick::DrawAromaticRingBond(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, const OpenBabel::vector3&, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1238:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] 1238 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1238:100: note: add parentheses around 'sizeof (double)' to silence this warning 1238 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ^~~~~~~~~~~~~~ | ( ) /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1237:24: note: array 'dashpattern' declared here 1237 | static const float dashpattern[] = {5., 5.}; | ^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory 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/usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/tetraplanar.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o CMakeFiles/openbabel.dir/confsearch.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/atom.h:30, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp: In constructor 'OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:134:66: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 134 | vec.erase(std::remove_if(vec.begin(), vec.end(), std::bind2nd(std::less(), (cutoff + 0.1) )), vec.end()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp: In member function 'bool OpenBabel::OBDiversePoses::AddPose(std::vector, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:189:14: warning: unused variable 'min_rmsd' [-Wunused-variable] 189 | double min_rmsd = DBL_MAX; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp: In member function 'int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:444:77: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 444 | transform(_energies.begin(), _energies.end(), _energies.begin(), bind2nd(std::plus(), energy_offset)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -MF CMakeFiles/openbabel.dir/conformersearch.cpp.o.d -o CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/conformersearch.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:20: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:250:12: warning: unused variable 'score' [-Wunused-variable] 250 | double score = ff->Energy(false); // no gradients | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'bool OpenBabel::OBConformerSearch::Setup(const OpenBabel::OBMol&, int, int, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:351:23: warning: variable 'end_it' set but not used [-Wunused-but-set-variable] 351 | OBRotorIterator end_it = m_rotorList.EndRotors(); | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::local_opt()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:789:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 789 | for (i = 1; i <= m_rotorList.Size(); ++i, rotor = m_rotorList.NextRotor(ri)) | ~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::reproduce(OpenBabel::RotorKey&, OpenBabel::RotorKey&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:850:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 850 | if (iniche > -1) | ~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::share_fitness()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1005:37: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1005 | if ((dynamic_niches.size () < nb_niches) && (dynamic_niches.size () %2)) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1020:30: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1020 | if (dist < min_dist ) | ~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1033:18: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 1033 | if (imax == -1) | ~~~~~^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1050:40: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1050 | if (dynamic_niches.size () < nb_niches) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:976:10: warning: unused variable 'flag_niched' [-Wunused-variable] 976 | bool flag_niched = false; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'double OpenBabel::OBConformerSearch::sharing_generation()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1139:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1139 | while (ninsert < ((half_pop * 2) / 3)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1148:24: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1148 | if (iround < imax) | ~~~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1156:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1156 | if (ninsert >= half_pop) | ~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1181:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1181 | while (ninsert < half_pop) | ~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1105:23: warning: unused variable 'lowest' [-Wunused-variable] 1105 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1105:37: warning: unused variable 'highest' [-Wunused-variable] 1105 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/squareplanar.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -MF CMakeFiles/openbabel.dir/stereo/facade.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/facade.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/tetrahedral.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o cd 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'/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -MF CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp:25: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -MF CMakeFiles/openbabel.dir/stereo/perception.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'bool OpenBabel::TetStereoToWedgeHash(OBMol&, std::map&, std::map&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2795:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 2795 | for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) | ^~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2951:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 2951 | return true; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OBMol&, OBStereo::Ref)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2973:16: warning: 'template class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ^~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/stereo/stereo.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/stereo/tetranonplanar.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/stereo/tetrahedral.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:26: /usr/include/c++/13/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2973:88: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OBMol&, OBStereo::Ref, OBStereo::Ref)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:3005:16: warning: 'template class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ^~~~~~~~~ /usr/include/c++/13/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:3005:93: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/align.cpp.o -MF CMakeFiles/openbabel.dir/math/align.cpp.o.d -o CMakeFiles/openbabel.dir/math/align.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/align.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/distgeom.cpp.o -MF CMakeFiles/openbabel.dir/distgeom.cpp.o.d -o CMakeFiles/openbabel.dir/distgeom.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:54: warning: ignoring '#pragma warning ' [-Wunknown-pragmas] 54 | #pragma warning(disable : 4244) // warning C4244: '=' : conversion from 'double' to 'float', possible loss of data | /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:55: warning: ignoring '#pragma warning ' [-Wunknown-pragmas] 55 | #pragma warning(disable : 4305) // warning C4305: '*=' : truncation from 'double' to 'float' | /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:619:3: warning: multi-line comment [-Wcomment] 619 | // \ | ^ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:38: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/distgeom.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'bool OpenBabel::OBDistanceGeometry::generateInitialCoords()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1089:16: warning: unused variable 'lb' [-Wunused-variable] 1089 | double lb = _d->GetLowerBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1090:16: warning: unused variable 'ub' [-Wunused-variable] 1090 | double ub = _d->GetUpperBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'bool OpenBabel::OBDistanceGeometry::firstMinimization()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1136:16: warning: unused variable 'lb' [-Wunused-variable] 1136 | double lb = _d->GetLowerBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1137:16: warning: unused variable 'ub' [-Wunused-variable] 1137 | double ub = _d->GetUpperBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1115:9: warning: unused variable 'niter' [-Wunused-variable] 1115 | int niter = solver.minimize(fun, _coord, fx); | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'bool OpenBabel::OBDistanceGeometry::minimizeFourthDimension()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1160:9: warning: unused variable 'niter' [-Wunused-variable] 1160 | int niter = solver.minimize(fun, _coord, fx); | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'double OpenBabel::DistGeomFunc::operator()(const Eigen::VectorXd&, Eigen::VectorXd&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1325:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::Index' {aka 'long int'} [-Wsign-compare] 1325 | for (size_t i=0; iaalloc]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp:463:47: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 463 | pat->atom = new AtomSpec[pat->aalloc]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/cmake -E cmake_symlink_library ../lib64/libopenbabel.so.7.0.0 ../lib64/libopenbabel.so.7 ../lib64/libopenbabel.so gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 22%] Built target openbabel gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/depend /usr/bin/gmake -f 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/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/filters.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/filters.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 23%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:20: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 23%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp:20: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 22%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp:20: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 22%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp:20: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 22%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addfilename.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addfilename.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addfilename.cpp:18: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 24%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/none.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/none.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/none.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 24%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/gasteiger.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/gasteiger.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 25%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp: In member function 'virtual bool OpenBabel::PatternFP::GetFingerprint(OpenBabel::OBBase*, std::vector&, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp:109:13: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 109 | while(n < _bitcount) | ~~^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 23%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eem.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eem.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eem.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eem.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 22%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/groupcontrib.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/groupcontrib.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/groupcontrib.cpp:33: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/groupcontrib.cpp:25: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 22%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger2.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger2.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger2.cpp:20: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addinindex.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addinindex.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addinindex.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 25%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/mmff94.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/mmff94.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 25%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp: In member function 'virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp:102:36: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 102 | for ( int i = 1; i <= mol.NumAtoms(); i++) | ~~^~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 25%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp:15: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 25%] Linking CXX shared module ../lib64/plugin_descriptors.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 27%] Built target plugin_descriptors gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addnonpolarh.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addnonpolarh.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addnonpolarh.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addpolarh.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addpolarh.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addpolarh.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 22%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp:21: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/canonical.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/canonical.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delpolarh.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delpolarh.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delpolarh.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp: In member function 'virtual bool OpenBabel::OpChangeCell::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:88:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 88 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:119:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 119 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 27%] Linking CXX shared module ../lib64/plugin_fingerprints.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 29%] Built target plugin_fingerprints gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 28%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp:20: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delnonpolarh.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delnonpolarh.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delnonpolarh.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen2D.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen2D.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen2D.cpp:21: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 28%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmilesformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In constructor 'OpenBabel::OBSmilesParser::OBSmilesParser(bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:291:10: warning: 'OpenBabel::OBSmilesParser::_preserve_aromaticity' will be initialized after [-Wreorder] 291 | bool _preserve_aromaticity; | ^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:289:9: warning: 'int OpenBabel::OBSmilesParser::_rxnrole' [-Wreorder] 289 | int _rxnrole; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:318:5: warning: when initialized here [-Wreorder] 318 | OBSmilesParser(bool preserve_aromaticity=false): _preserve_aromaticity(preserve_aromaticity), _rxnrole(1) { } | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBSmilesParser::ParseSmiles(OpenBabel::OBMol&, const std::string&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:655:15: warning: variable 'atom' set but not used [-Wunused-but-set-variable] 655 | OBAtom* atom; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'int OpenBabel::OBSmilesParser::NumConnections(OpenBabel::OBAtom*, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2200:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 2200 | if (idx-1 < _hcount.size() && _hcount[idx-1] > 0) | ~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2685:10: warning: variable 'symbol' set but not used [-Wunused-but-set-variable] 2685 | char symbol[10]; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2689:10: warning: unused variable 'normalValence' [-Wunused-variable] 2689 | bool normalValence = true; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2690:10: warning: unused variable 'writeExplicitHydrogen' [-Wunused-variable] 2690 | bool writeExplicitHydrogen = false; | ^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::BuildCanonTree(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::vector&, OpenBabel::OBCanSmiNode*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3139:22: warning: unused variable 'bond_order' [-Wunused-variable] 3139 | unsigned int bond_order = bond->GetBondOrder(); | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3134:20: warning: unused variable 'nbr_bond_order' [-Wunused-variable] 3134 | unsigned int nbr_bond_order = nbr_bond->GetBondOrder(); | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'std::vector OpenBabel::OBMol2Cansmi::GetCanonClosureDigits(OpenBabel::OBAtom*, OpenBabel::OBBitVec&, std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3286:11: warning: unused variable 'bo' [-Wunused-variable] 3286 | int bo = (bond1->IsAromatic())? 1 : bond1->GetBondOrder(); // CJ: why was this line added? bo is never used? | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'void OpenBabel::OBMol2Cansmi::CreateFragCansmiString(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::string&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3899:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3899 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3905 | for (int i=0; i struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp:29: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp: In member function 'virtual bool OpenBabel::OpMinimize::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp:265:10: warning: unused variable 'done' [-Wunused-variable] 265 | bool done = true; | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/fillUC.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/fillUC.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen3d.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen3d.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/largest.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/largest.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/largest.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 30%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:31: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In member function 'virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:2798:32: warning: variable 'bondtype1' set but not used [-Wunused-but-set-variable] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:2798:43: warning: variable 'bondtype2' set but not used [-Wunused-but-set-variable] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:289:40: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 148 | for (int i = 0; i < _bondcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:289:58: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:295:41: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 263 | for (int i = 0; i < _anglecalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:295:60: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:301:42: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 376 | for (int i = 0; i < _strbndcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:301:62: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:307:43: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 512 | for (int i = 0; i < _torsioncalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:307:64: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:313:39: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 610 | for (int i = 0; i < _oopcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:313:56: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:319:39: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 707 | for (int i = 0; i < _vdwcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:319:56: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:325:49: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 793 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:325:76: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 30%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:35: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:26: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:43: /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h: In function 'unsigned int MDLValence(unsigned int, int, unsigned int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:51:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 51 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:51:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 51 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:64:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 64 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:64:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 64 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:77:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 77 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:77:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 77 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:90:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 90 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:90:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 90 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:103:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 103 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:103:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 103 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:116:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 116 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:116:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 116 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:119:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 119 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:119:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 119 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:121:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 121 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:121:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 121 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:134:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 134 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:134:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 134 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:137:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 137 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:137:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 137 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:139:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 139 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:139:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 139 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:152:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 152 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:152:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 152 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:155:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 155 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:155:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 155 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:157:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 157 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:157:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 157 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:170:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 170 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:170:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 170 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:173:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 173 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:173:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 173 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:175:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 175 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:175:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 175 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:188:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 188 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:188:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 188 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:191:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 191 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:191:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 191 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:193:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 193 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:193:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 193 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:206:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 206 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:206:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 206 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:209:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 209 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:209:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 209 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:211:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 211 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:211:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 211 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:223:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 223 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:223:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 223 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:226:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 226 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:226:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 226 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:228:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 228 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:228:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 228 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:240:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 240 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:240:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 240 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:243:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 243 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:243:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 243 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:245:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 245 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:245:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 245 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:257:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 257 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:257:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 257 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:260:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 260 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:260:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 260 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:262:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 262 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:262:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 262 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:274:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 274 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:274:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 274 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:277:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 277 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:277:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 277 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:279:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 279 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:279:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 279 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:291:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 291 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:291:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 291 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:294:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 294 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:294:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 294 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:296:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 296 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:296:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 296 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:298:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 298 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:298:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 298 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:310:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 310 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:310:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 310 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:313:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 313 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:313:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 313 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:315:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 315 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:315:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 315 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:317:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 317 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:317:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 317 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:329:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 329 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:329:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 329 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:332:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 332 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:332:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 332 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:334:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 334 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:334:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 334 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:336:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 336 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:336:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 336 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:348:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 348 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:348:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 348 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:351:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 351 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:351:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 351 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:353:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 353 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:353:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 353 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:355:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 355 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:355:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 355 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:367:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 367 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:367:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 367 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:370:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 370 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:370:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 370 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:372:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 372 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:372:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 372 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:374:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 374 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:374:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 374 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:385:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 385 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:385:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 385 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:388:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 388 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:388:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 388 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:390:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 390 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:390:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 390 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:392:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 392 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:392:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 392 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:394:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 394 | if (val <= 3) return 3; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:394:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 394 | if (val <= 3) return 3; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h: In function 'unsigned int HYDValence(unsigned int, int, unsigned int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:416:11: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 416 | if (val > impval) { | ~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp: In member function 'bool OpenBabel::MDLFormat::ReadAtomBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:1488:10: warning: unused variable 'chiralWatch' [-Wunused-variable] 1488 | bool chiralWatch=false; | ^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/loader.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/loader.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/loader.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/loader.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/neutralize.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/neutralize.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/optransform.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/optransform.h:21, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/optransform.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/parsmart.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/phmodel.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/optransform.h:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp: In member function 'virtual bool OpenBabel::OpSplit::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp:92:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 92 | if(!pConv) | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp:95:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 95 | if(pConv->IsFirstInput()) | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/partialcharges.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/partialcharges.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 31%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:32: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:21: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp: In instantiation of 'void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:478:37: required from 'double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = true]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.h:193:37: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:431:14: warning: unused variable 'ab' [-Wunused-variable] 431 | double ab[3]; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp: In instantiation of 'void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:478:37: required from 'double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = false]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.h:193:54: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:431:14: warning: unused variable 'ab' [-Wunused-variable] gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 25%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eqeq.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eqeq.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eqeq.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/readconformers.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/readconformers.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 33%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/sort.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/sort.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/sort.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/sort.cpp:32:28: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 32 | struct Order : public std::binary_function, std::pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 30%] Linking CXX shared module ../../lib64/smilesformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Built target smilesformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmol2format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o CMakeFiles/mol2format.dir/mol2format.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp: In member function 'virtual bool OpenBabel::MOL2Format::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:422:22: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 422 | if(aid <= mol.NumAtoms()) | ~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp: In member function 'virtual int OpenBabel::MOL2Format::SkipObjects(int, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:785:10: warning: unused variable 'ch' [-Wunused-variable] 785 | char ch = ifs.peek(); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:86:15: warning: 'bool OpenBabel::IsThiocarboxylSulfur(OBAtom*)' defined but not used [-Wunused-function] 86 | static bool IsThiocarboxylSulfur(OBAtom* queryatom) | ^~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.h:15, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/parsmart.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp:15: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp: In member function 'virtual bool OpenBabel::OpNewS::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp:303:28: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 303 | if(pmol->NumHvyAtoms() != nPatternAtoms) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 32%] Linking CXX shared module ../../lib64/mdlformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Built target mdlformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/ophighlight.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/ophighlight.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/parsmart.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/ophighlight.cpp:16: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/xout.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/xout.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/xout.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -MF CMakeFiles/pdbformat.dir/pdbformat.cpp.o.d -o CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp:615:26: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 615 | if (origin == pUC->GetSpaceGroup()->HEXAGONAL_ORIGIN) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Linking CXX shared module ../../lib64/mol2format.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mol2format.so CMakeFiles/mol2format.dir/mol2format.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Built target mol2format gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 26%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qtpie.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qtpie.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qtpie.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -MF CMakeFiles/asciiformat.dir/asciiformat.cpp.o.d -o CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/asciiformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/asciiformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:33: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:29: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp: In member function 'virtual bool OpenBabel::OpConformer::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:291:19: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 291 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:291:42: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 291 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -MF CMakeFiles/inchiformat.dir/inchiformat.cpp.o.d -o CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:32: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp: In member function 'virtual bool OpenBabel::InChIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:193:52: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'AT_NUM' {aka 'short int'} [-Wsign-compare] 193 | if ( !(a->GetId() == ct->end || a->GetId() == stereo.neighbor[0] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:199:54: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'AT_NUM' {aka 'short int'} [-Wsign-compare] 199 | if ( !(b->GetId() == ct->begin || b->GetId() == stereo.neighbor[3] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp: In member function 'virtual void OpenBabel::ASCIIPainter::DrawText(double, double, const std::string&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp:118:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 118 | for (int i=0; i struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opalign.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 35%] Linking CXX shared module ../../lib64/asciiformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/asciiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/asciiformat.so CMakeFiles/asciiformat.dir/asciiformat.cpp.o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Built target asciiformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 26%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qeq.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qeq.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qeq.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/unique.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/unique.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/unique.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 34%] Linking CXX shared module ../../lib64/pdbformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Built target pdbformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcopyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -MF CMakeFiles/copyformat.dir/copyformat.cpp.o.d -o CMakeFiles/copyformat.dir/copyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/copyformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/copyformat.cpp:14: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp: In member function 'void OpenBabel::OpConfab::Run(OpenBabel::OBConversion*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp:167:14: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 167 | for (; c < mol.NumConformers(); ++c) { | ~~^~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Linking CXX shared module ../../lib64/copyformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/copyformat.so CMakeFiles/copyformat.dir/copyformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Built target copyformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolreport_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/molreport.dir/molreport.cpp.o -MF CMakeFiles/molreport.dir/molreport.cpp.o.d -o CMakeFiles/molreport.dir/molreport.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/molreport.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/molreport.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -MF CMakeFiles/MNAformat.dir/MNAformat.cpp.o.d -o CMakeFiles/MNAformat.dir/MNAformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MNAformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MNAformat.cpp:31: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Linking CXX shared module ../../lib64/molreport.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molreport.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/molreport.so CMakeFiles/molreport.dir/molreport.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo 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Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Linking CXX shared module ../../lib64/MNAformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory 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-flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -MF CMakeFiles/nulformat.dir/nulformat.cpp.o.d -o CMakeFiles/nulformat.dir/nulformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nulformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nulformat.cpp:14: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Linking CXX shared module ../../lib64/nulformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/nulformat.so CMakeFiles/nulformat.dir/nulformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Built target nulformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT 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-isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -MF CMakeFiles/painterformat.dir/painterformat.cpp.o.d -o CMakeFiles/painterformat.dir/painterformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/painterformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/painterformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/painterformat.cpp: In member function 'virtual bool OpenBabel::PainterFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/painterformat.cpp:114:12: warning: unused variable 'ofs' [-Wunused-variable] 114 | ostream& ofs = *pConv->GetOutStream(); | ^~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 36%] Linking CXX shared module ../../lib64/inchiformat.so cd 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../../lib64/painterformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/painterformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/painterformat.so CMakeFiles/painterformat.dir/painterformat.cpp.o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Built target painterformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' 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/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpovrayformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -MF CMakeFiles/povrayformat.dir/povrayformat.cpp.o.d -o CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp: In member function 'void OpenBabel::PovrayFormat::OutputHeader(std::ostream&, OpenBabel::OBMol&, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:173:12: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] 173 | size_t time_res; /* Result of strftime */ | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp: In function 'void OpenBabel::OutputCSTBonds(std::ostream&, OBMol&, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:526:78: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = char]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 526 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438: /usr/include/c++/13/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:587:78: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = char]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 587 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp: In member function 'virtual bool OpenBabel::PovrayFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:807:17: warning: unused variable 'title' [-Wunused-variable] 807 | const char* title = pmol->GetTitle(); | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtitleformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -MF CMakeFiles/titleformat.dir/titleformat.cpp.o.d -o CMakeFiles/titleformat.dir/titleformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/titleformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/titleformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtextformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -MF CMakeFiles/textformat.dir/textformat.cpp.o.d -o CMakeFiles/textformat.dir/textformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/textformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/textformat.cpp:14: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Linking CXX shared module ../../lib64/titleformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/titleformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/titleformat.so CMakeFiles/titleformat.dir/titleformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Built target titleformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Linking CXX shared module ../../lib64/textformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/textformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/textformat.so CMakeFiles/textformat.dir/textformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 38%] Built target textformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dreportformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -MF CMakeFiles/reportformat.dir/reportformat.cpp.o.d -o CMakeFiles/reportformat.dir/reportformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/reportformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/reportformat.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Linking CXX shared module ../../lib64/povrayformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 38%] Built target povrayformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Building CXX object src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dconfabreport_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o -MF CMakeFiles/confabreport.dir/confabreport.cpp.o.d -o CMakeFiles/confabreport.dir/confabreport.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/confabreport.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/confabreport.cpp:34: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/confabreport.cpp: In member function 'void OpenBabel::ConfabReport::WriteOutput(std::ostream&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/confabreport.cpp:129:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 129 | for (int i=1; i < binvals.size(); i++) | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/confabreport.cpp:134:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 134 | for (int i=1; i < cumbins.size(); i++) | ~~^~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 37%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsvgformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -MF CMakeFiles/svgformat.dir/svgformat.cpp.o.d -o CMakeFiles/svgformat.dir/svgformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp: In member function 'virtual bool OpenBabel::SVGFormat::WriteChemObject(OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp:226:42: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 226 | bool nomore = _nmax && (_objects.size()==_nmax); | ~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp:248:18: warning: unused variable 'n' [-Wunused-variable] 248 | unsigned int n=0; | ^ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp: In member function 'virtual bool OpenBabel::SVGFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp:273:8: warning: unused variable 'ret' [-Wunused-variable] 273 | bool ret = WriteSVG(pConv,_objects); | ^~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 38%] Linking CXX shared module ../../lib64/reportformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/reportformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/reportformat.so CMakeFiles/reportformat.dir/reportformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 39%] Built target reportformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 38%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpngformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -MF CMakeFiles/pngformat.dir/pngformat.cpp.o.d -o CMakeFiles/pngformat.dir/pngformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pngformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pngformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pngformat.cpp:13: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 39%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dabinitformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -MF CMakeFiles/abinitformat.dir/abinitformat.cpp.o.d -o CMakeFiles/abinitformat.dir/abinitformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/abinitformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/abinitformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/abinitformat.cpp: In member function 'virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/abinitformat.cpp:99:12: warning: variable 'acell' set but not used [-Wunused-but-set-variable] 99 | double acell[3]; // scale of lattice vectors | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 39%] Linking CXX shared module ../../lib64/confabreport.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/confabreport.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/confabreport.so CMakeFiles/confabreport.dir/confabreport.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Built target confabreport gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 38%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacesformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -MF CMakeFiles/acesformat.dir/acesformat.cpp.o.d -o CMakeFiles/acesformat.dir/acesformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/acesformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/acesformat.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Linking CXX shared module ../../lib64/pngformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pngformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pngformat.so CMakeFiles/pngformat.dir/pngformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Built target pngformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build gmake[2]: 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'/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Built target plugin_ops gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/crystal09format.dir/build.make 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gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Linking 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/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dadfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -MF CMakeFiles/adfformat.dir/adfformat.cpp.o.d -o CMakeFiles/adfformat.dir/adfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:35: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:29: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:37: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:228:32: warning: 'virtual const std::string& OpenBabel::OBGenericData::GetValue() const' was hidden [-Woverloaded-virtual=] 228 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:46: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:76:12: note: by 'OpenBabel::OBGridData::GetValue' 76 | double GetValue (vector3 pos) const; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp: In member function 'bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:871:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 871 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:871:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 871 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:884:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 884 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:884:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 884 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:906:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 906 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:906:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 906 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:921:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 921 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:921:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 921 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:936:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 936 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:936:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 936 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcastepformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -MF CMakeFiles/castepformat.dir/castepformat.cpp.o.d -o CMakeFiles/castepformat.dir/castepformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/castepformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/castepformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Linking CXX shared module ../../lib64/acesformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/acesformat.so CMakeFiles/acesformat.dir/acesformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 42%] Built target acesformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 41%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddaltonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -MF CMakeFiles/daltonformat.dir/daltonformat.cpp.o.d -o CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp: In member function 'virtual bool OpenBabel::DALTONInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp:148:9: warning: variable 'atomcount' set but not used [-Wunused-but-set-variable] 148 | int atomcount = 0; // for each atom type | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp: In member function 'virtual bool OpenBabel::DALTONInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp:312:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 312 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp:332:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 332 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrystal09format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -MF CMakeFiles/crystal09format.dir/crystal09format.cpp.o.d -o CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/crystal09format.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/crystal09format.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/crystal09format.cpp:15: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 42%] Linking CXX shared module ../../lib64/castepformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/castepformat.so CMakeFiles/castepformat.dir/castepformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 42%] Built target castepformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 40%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Daoforceformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -MF CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o.d -o CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/aoforceformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/aoforceformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 41%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddmolformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -MF CMakeFiles/dmolformat.dir/dmolformat.cpp.o.d -o CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dmolformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dmolformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 42%] Linking CXX shared module ../../lib64/daltonformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/daltonformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Built target daltonformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Linking CXX shared module ../../lib64/dmolformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Linking CXX shared module ../../lib64/aoforceformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/aoforceformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/aoforceformat.so CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Built target dmolformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Built target aoforceformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 42%] Linking CXX shared module ../../lib64/crystal09format.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystal09format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Built target crystal09format gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -MF CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o.d -o CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fhiaimsformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fhiaimsformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 42%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfchkformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:16: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp: In member function 'virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:596:40: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 596 | if (alphaorb_found && (numAOrb > alphaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:609:40: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 609 | if (betaorb_found && (numBOrb > betaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:668:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less_equal; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 668 | bind2nd(less_equal(), 0)) || | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:671:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 671 | bind2nd(greater(), MxBond)) || | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:674:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 674 | bind2nd(less(), 0)) || | ~~~~~~~^~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:677:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 677 | bind2nd(greater(), Natoms))) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:700:40: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 700 | if (numAOrb > 0 && alphaorb.size() == numAOrb) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:704:41: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 704 | if (numBOrb > 0 && betaorb.size() == numBOrb) { // open shell calculation | ~~~~~~~~~~~~~~~^~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Linking CXX shared module ../../lib64/fhiaimsformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhiaimsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fhiaimsformat.so CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 44%] Built target fhiaimsformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -MF CMakeFiles/gamessformat.dir/gamessformat.cpp.o.d -o CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp: In member function 'virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp:587:38: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 587 | for (unsigned int i=0; i < modeCount; ++i) { | ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp:233:9: warning: variable 'ndummyatoms' set but not used [-Wunused-but-set-variable] 233 | int ndummyatoms = 0; | ^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausszmatformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -MF CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o.d -o CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausszmatformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausszmatformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 41%] Linking CXX shared module ../../lib64/adfformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/adfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/adfformat.so CMakeFiles/adfformat.dir/adfformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 45%] Built target adfformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgaussformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -MF CMakeFiles/gaussformat.dir/gaussformat.cpp.o.d -o CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/data.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp:17: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp: In function 'void OpenBabel::add_unique_pairdata_to_mol(OBMol*, std::string, std::string, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp:284:19: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 284 | if (vs.size() >= start) | ~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp:287:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 287 | for(i=start+1; (i struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 45%] Linking CXX shared module ../../lib64/gausszmatformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausszmatformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gausszmatformat.so CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 45%] Built target gausszmatformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 43%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -MF CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o.d -o CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:25: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:30: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:228:32: warning: 'virtual const std::string& OpenBabel::OBGenericData::GetValue() const' was hidden [-Woverloaded-virtual=] 228 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:36: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:76:12: note: by 'OpenBabel::OBGridData::GetValue' 76 | double GetValue (vector3 pos) const; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp: In member function 'virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:432:25: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 432 | while (vgd.size() < nCubes) | ~~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:479:26: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 479 | while (values.size() < n*nCubes) | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:114:17: warning: unused variable 'title' [-Wunused-variable] 114 | const char* title = pConv->GetTitle(); | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 45%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dhinformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o -MF CMakeFiles/hinformat.dir/hinformat.cpp.o.d -o CMakeFiles/hinformat.dir/hinformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/hinformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/hinformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 45%] Linking CXX shared module ../../lib64/gulpformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gulpformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gulpformat.so CMakeFiles/gulpformat.dir/gulpformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Built target gulpformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Linking CXX shared module ../../lib64/hinformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/hinformat.so CMakeFiles/hinformat.dir/hinformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Built target hinformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 44%] Linking CXX shared module ../../lib64/fchkformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fchkformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fchkformat.so CMakeFiles/fchkformat.dir/fchkformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Built target fchkformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 45%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Djaguarformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -MF CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o.d -o CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/jaguarformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/jaguarformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolproformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o -MF CMakeFiles/molproformat.dir/molproformat.cpp.o.d -o CMakeFiles/molproformat.dir/molproformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/molproformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/molproformat.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 44%] Linking CXX shared module ../../lib64/gamessformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gamessformat.so CMakeFiles/gamessformat.dir/gamessformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Built target gamessformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmopacformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o -MF CMakeFiles/mopacformat.dir/mopacformat.cpp.o.d -o CMakeFiles/mopacformat.dir/mopacformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mopacformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mopacformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mopacformat.cpp: In member function 'virtual bool OpenBabel::MOPACCARTFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mopacformat.cpp:650:19: warning: variable 'isotopeMass' set but not used [-Wunused-but-set-variable] 650 | double x,y,z, isotopeMass; | ^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Linking CXX shared module ../../lib64/jaguarformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/jaguarformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/jaguarformat.so CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 45%] Linking CXX shared module ../../lib64/gausscubeformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausscubeformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gausscubeformat.so CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Built target jaguarformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Built target gausscubeformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build /usr/bin/gmake -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Linking CXX shared module ../../lib64/molproformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/molproformat.so CMakeFiles/molproformat.dir/molproformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Built target molproformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f 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-O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -MF CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o.d -o CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadCoordinates(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp:228:72: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 228 | if ((i>=natoms) || (molecule->GetAtom(i+1)->GetAtomicNum() != atoi(vs[2].c_str()))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadMultipoleMoment(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp:306:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 306 | else if (vs[0][0] == '1') | ^ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadPartialCharges(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp:423:56: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 423 | if (molecule->GetAtom(i++)->GetAtomicNum() != charge) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadMEPCalculation(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp:571:25: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 571 | if (energies.size() != molecule->NumConformers()) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp:932:34: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 932 | if (atoi(buffer) != natoms) | ~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp:111:20: warning: 'OpenBabel::BETA_ORBITAL_PATTERN' defined but not used [-Wunused-variable] 111 | static const char* BETA_ORBITAL_PATTERN = "Beta"; | ^~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 45%] Linking CXX shared module ../../lib64/gaussformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] 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'/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Built target plugin_charges gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpwscfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -MF CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o.d -o CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pwscfformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pwscfformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dqchemformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o -MF CMakeFiles/qchemformat.dir/qchemformat.cpp.o.d -o CMakeFiles/qchemformat.dir/qchemformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp:16: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp: In member function 'virtual bool OpenBabel::QChemOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp:194:28: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 194 | if (nbAtomRead != mol.NumAtoms()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsiestaformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o -MF CMakeFiles/siestaformat.dir/siestaformat.cpp.o.d -o CMakeFiles/siestaformat.dir/siestaformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp: In member function 'virtual bool OpenBabel::SIESTAFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp:92:10: warning: variable 'coordsAreAngstrom' set but not used [-Wunused-but-set-variable] 92 | bool coordsAreAngstrom = false; | ^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp:98:12: warning: variable 'size' set but not used [-Wunused-but-set-variable] 98 | size_t size; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp:102:30: warning: unused variable 'numSpecies' [-Wunused-variable] 102 | int atomicNum, numAtoms, numSpecies; | ^~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Linking CXX shared module ../../lib64/mopacformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Built target mopacformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dturbomoleformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -MF CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o.d -o CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/turbomoleformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/turbomoleformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Linking CXX shared module ../../lib64/pwscfformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Built target pwscfformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxsfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o -MF CMakeFiles/xsfformat.dir/xsfformat.cpp.o.d -o CMakeFiles/xsfformat.dir/xsfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xsfformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xsfformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Linking CXX shared module ../../lib64/turbomoleformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Built target turbomoleformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dzindoformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o -MF CMakeFiles/zindoformat.dir/zindoformat.cpp.o.d -o CMakeFiles/zindoformat.dir/zindoformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/zindoformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/zindoformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Linking CXX shared module ../../lib64/zindoformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/zindoformat.so CMakeFiles/zindoformat.dir/zindoformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Built target zindoformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dvaspformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o -MF CMakeFiles/vaspformat.dir/vaspformat.cpp.o.d -o CMakeFiles/vaspformat.dir/vaspformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:451:17: warning: unused variable 'freqnum' [-Wunused-variable] 451 | int freqnum = atoi(vs[0].c_str()); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:535:35: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = not_equal_to; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 535 | std::bind2nd(std::not_equal_to(), 0.0)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:589:36: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = divides; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 589 | std::bind2nd(std::divides(), max / 100.0)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:668:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 668 | for(int i = 0; i < atoms_sorted.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Linking CXX shared module ../../lib64/qchemformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Built target qchemformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Linking CXX shared module ../../lib64/xsfformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/xsfformat.so CMakeFiles/xsfformat.dir/xsfformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Built target xsfformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Linking CXX shared module ../../lib64/siestaformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/siestaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/siestaformat.so CMakeFiles/siestaformat.dir/siestaformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Built target siestaformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o -MF CMakeFiles/APIInterface.dir/APIInterface.cpp.o.d -o CMakeFiles/APIInterface.dir/APIInterface.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/APIInterface.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/APIInterface.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o -MF CMakeFiles/CSRformat.dir/CSRformat.cpp.o.d -o CMakeFiles/CSRformat.dir/CSRformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/CSRformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/CSRformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Linking CXX shared module ../../lib64/CSRformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/CSRformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Built target CSRformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessukformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -MF CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o.d -o CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:14: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadInitialCartesian(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:787:10: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 787 | bool ok=false; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz1(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:853:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 853 | bool ok=false; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz2(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:900:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 900 | bool ok=false; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp: In member function 'virtual bool OpenBabel::GAMESSUKOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:1215:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 1215 | bool ok; | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Linking CXX shared module ../../lib64/APIInterface.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/APIInterface.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Built target APIInterface gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 46%] Linking CXX shared module ../../lib64/nwchemformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nwchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/nwchemformat.so CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Built target nwchemformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o -MF CMakeFiles/PQSformat.dir/PQSformat.cpp.o.d -o CMakeFiles/PQSformat.dir/PQSformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/PQSformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/PQSformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 47%] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dorcaformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o -MF CMakeFiles/orcaformat.dir/orcaformat.cpp.o.d -o CMakeFiles/orcaformat.dir/orcaformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp: In member function 'virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:348:33: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 348 | while(vs.size() == nColumn+1) { | ~~~~~~~~~~^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:363:48: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 363 | for (unsigned int i = 0; i < nColumn; i++) { | ~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:375:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 375 | for (unsigned int i = 0; i < nColumn; i++) { | ~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:131:12: warning: unused variable 'energy' [-Wunused-variable] 131 | double energy=0; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:138:9: warning: variable 'nModeAll' set but not used [-Wunused-but-set-variable] 138 | int nModeAll = 0; | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dalchemyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -MF CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o.d -o CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/alchemyformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/alchemyformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -MF CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o.d -o CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp: In member function 'void OpenBabel::MCDLFormat::solve(int, int (*)[4], int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:283:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 283 | if (jflag) | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:287:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 287 | nt = 1; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp: In member function 'void OpenBabel::MCDLFormat::setMCDL(std::string, OpenBabel::OBMol*, std::string&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:1267:15: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1267 | if (nPrev == acount) { | ~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp: In member function 'int OpenBabel::MCDLFormat::indexOf(std::string, std::string, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:1385:16: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string::size_type' {aka 'const long unsigned int'} [-Wsign-compare] 1385 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:1386:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1386 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp: In member function 'int OpenBabel::MCDLFormat::lastIndexOf(std::string, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:1399:11: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string::size_type' {aka 'const long unsigned int'} [-Wsign-compare] 1399 | if (n == string::npos) | ~~^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacrformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o -MF CMakeFiles/acrformat.dir/acrformat.cpp.o.d -o CMakeFiles/acrformat.dir/acrformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/acrformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/acrformat.cpp:26: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/acrformat.cpp:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Linking CXX shared module ../../lib64/PQSformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/PQSformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 50%] Built target PQSformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Damberformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o -MF CMakeFiles/amberformat.dir/amberformat.cpp.o.d -o CMakeFiles/amberformat.dir/amberformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/amberformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/amberformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Linking CXX shared module ../../lib64/alchemyformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/alchemyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/alchemyformat.so CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 52%] Built target alchemyformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 50%] Linking CXX shared module ../../lib64/acrformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/acrformat.so CMakeFiles/acrformat.dir/acrformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 52%] Built target acrformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f 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'/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 52%] Built target amberformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 51%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbalstformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o -MF CMakeFiles/balstformat.dir/balstformat.cpp.o.d -o CMakeFiles/balstformat.dir/balstformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/balstformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/balstformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 52%] Linking CXX shared module ../../lib64/balstformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/balstformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/balstformat.so CMakeFiles/balstformat.dir/balstformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 52%] Built target balstformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 52%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dboxformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o -MF CMakeFiles/boxformat.dir/boxformat.cpp.o.d -o CMakeFiles/boxformat.dir/boxformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/boxformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/boxformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 52%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbgfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o -MF CMakeFiles/bgfformat.dir/bgfformat.cpp.o.d -o CMakeFiles/bgfformat.dir/bgfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/bgfformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/bgfformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 52%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacaoformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -MF CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o.d -o CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cacaoformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cacaoformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 48%] Linking CXX shared module ../../lib64/vaspformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/vaspformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/vaspformat.so CMakeFiles/vaspformat.dir/vaspformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Built target vaspformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Linking CXX shared module ../../lib64/gamessukformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessukformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gamessukformat.so CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Built target gamessukformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Linking CXX shared module 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53%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacheformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o -MF CMakeFiles/cacheformat.dir/cacheformat.cpp.o.d -o CMakeFiles/cacheformat.dir/cacheformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cacheformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cacheformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 49%] Linking CXX shared module ../../lib64/orcaformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/orcaformat.so CMakeFiles/orcaformat.dir/orcaformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Built target orcaformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f 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directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Linking CXX shared module ../../lib64/cacaoformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacaoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend gmake[1]: Entering directory 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Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Linking CXX shared module ../../lib64/cacheformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacheformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cacheformat.so CMakeFiles/cacheformat.dir/cacheformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Built target cacheformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/cofformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcccformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o -MF CMakeFiles/cccformat.dir/cccformat.cpp.o.d -o CMakeFiles/cccformat.dir/cccformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cccformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cccformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcarformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/carformat.dir/carformat.cpp.o -MF CMakeFiles/carformat.dir/carformat.cpp.o.d -o CMakeFiles/carformat.dir/carformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/carformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/carformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Linking CXX shared module ../../lib64/cccformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cccformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cccformat.so CMakeFiles/cccformat.dir/cccformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Built target cccformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawct_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -MF CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o.d -o CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chemdrawct.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chemdrawct.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemtoolformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -MF CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o.d -o CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chemtoolformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chemtoolformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 53%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchem3dformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -MF CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o.d -o CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chem3dformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chem3dformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/math/matrix3x3.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/chem3dformat.cpp:17: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Linking CXX shared module ../../lib64/carformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/carformat.so CMakeFiles/carformat.dir/carformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Built target carformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Linking CXX shared module ../../lib64/chemdrawct.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawct.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Built target chemdrawct gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Linking CXX shared module ../../lib64/chemtoolformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemtoolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/chemtoolformat.so CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 55%] Built target chemtoolformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Linking CXX shared module ../../lib64/chem3dformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chem3dformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 55%] Built target chem3dformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrkformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o -MF CMakeFiles/crkformat.dir/crkformat.cpp.o.d -o CMakeFiles/crkformat.dir/crkformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/crkformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/crkformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Building CXX object src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcofformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o -MF CMakeFiles/cofformat.dir/cofformat.cpp.o.d -o CMakeFiles/cofformat.dir/cofformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp: In member function 'virtual bool OpenBabel::COFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp:133:22: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 133 | if(vs.size() < offset+9) | ~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp:180:26: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 180 | for(int j=0 ; j< natoms ; j++) | ~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp: In member function 'virtual bool OpenBabel::COFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp:368:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 368 | for( int j=0; j struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 56%] Linking CXX shared module ../../lib64/crkformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/crkformat.so CMakeFiles/crkformat.dir/crkformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 57%] Built target crkformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 57%] Linking CXX shared module ../../lib64/cssrformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 57%] Built target cssrformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 55%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastsearchformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -MF CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o.d -o CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp:16: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp: In member function 'void OpenBabel::FastSearchFormat::AddPattern(std::vector&, OpenBabel::OBMol, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp:690:11: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 690 | if(idx>=patternMol.NumBonds()) | ~~~^~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 50%] Linking CXX shared module ../../lib64/MCDLformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MCDLformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/MCDLformat.so CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 54%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcifformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o -MF CMakeFiles/cifformat.dir/cifformat.cpp.o.d -o CMakeFiles/cifformat.dir/cifformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp: In member function 'void OpenBabel::CIFData::CalcMatrices()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:915:11: warning: variable 'aa' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:915:14: warning: variable 'bb' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:915:27: warning: variable 'betaa' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:915:33: warning: variable 'gammaa' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 57%] Built target MCDLformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 55%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dexyzformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o -MF CMakeFiles/exyzformat.dir/exyzformat.cpp.o.d -o CMakeFiles/exyzformat.dir/exyzformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/exyzformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/exyzformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/exyzformat.cpp: In member function 'virtual bool OpenBabel::EXYZFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/exyzformat.cpp:124:19: warning: variable 'virtualAtoms' set but not used [-Wunused-but-set-variable] 124 | bool unitCell,virtualAtoms; | ^~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 55%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddlpolyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -MF CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o.d -o CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dlpolyformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dlpolyformat.cpp:14: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dlpolyformat.cpp: In member function 'bool OpenBabel::DlpolyInputReader::ParseUnitCell(std::istream&, OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/dlpolyformat.cpp:152:10: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 152 | bool ok; | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 57%] Linking CXX shared module ../../lib64/cofformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cofformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cofformat.so CMakeFiles/cofformat.dir/cofformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Built target cofformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 57%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastaformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o -MF CMakeFiles/fastaformat.dir/fastaformat.cpp.o.d -o CMakeFiles/fastaformat.dir/fastaformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastaformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastaformat.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastaformat.cpp: In function 'void OpenBabel::add_residue(OBMol*, OBResidue*, double, double, long unsigned int&, ResidueRecord*, int, OBAtom*&, bool, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fastaformat.cpp:394:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 394 | else if (atom_count > resBondFromOffset) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 57%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfeatformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/featformat.dir/featformat.cpp.o -MF CMakeFiles/featformat.dir/featformat.cpp.o.d -o CMakeFiles/featformat.dir/featformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/featformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/featformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 57%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o -MF CMakeFiles/fhformat.dir/fhformat.cpp.o.d -o CMakeFiles/fhformat.dir/fhformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fhformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fhformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Linking CXX shared module ../../lib64/featformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/featformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/featformat.so CMakeFiles/featformat.dir/featformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Built target featformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Linking CXX shared module ../../lib64/exyzformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/exyzformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/exyzformat.so CMakeFiles/exyzformat.dir/exyzformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Built target exyzformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Linking CXX shared module ../../lib64/fastaformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Built target fastaformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/ghemicalformat.dir/build.make 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Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfingerprintformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -MF CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o.d -o CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fingerprintformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fingerprintformat.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fingerprintformat.cpp:15: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 57%] Linking CXX shared module ../../lib64/fastsearchformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastsearchformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fastsearchformat.so CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Built target fastsearchformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfpsformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o -MF CMakeFiles/fpsformat.dir/fpsformat.cpp.o.d -o CMakeFiles/fpsformat.dir/fpsformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp:15: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp: In member function 'virtual bool OpenBabel::FPSFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp:152:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 152 | for(unsigned i=0;i<(_nbits+31)/32;++i) | ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp: In member function 'std::string OpenBabel::FPSFormat::getTimeStr()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp:175:10: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] 175 | size_t time_res; /* Result of strftime */ | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 59%] Linking CXX shared module ../../lib64/fingerprintformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fingerprintformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fingerprintformat.so CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Built target fingerprintformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgromos96format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o -MF CMakeFiles/gromos96format.dir/gromos96format.cpp.o.d -o CMakeFiles/gromos96format.dir/gromos96format.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gromos96format.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/gromos96format.cpp:54: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 59%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfreefracformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o -MF CMakeFiles/freefracformat.dir/freefracformat.cpp.o.d -o CMakeFiles/freefracformat.dir/freefracformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/freefracformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/freefracformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 59%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dghemicalformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -MF CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o.d -o CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/ghemicalformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/ghemicalformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 58%] Linking CXX shared module ../../lib64/dlpolyformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlpolyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/dlpolyformat.so CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Built target dlpolyformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Linking CXX shared module ../../lib64/fpsformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/fpsformat.so CMakeFiles/fpsformat.dir/fpsformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Linking CXX shared module ../../lib64/gromos96format.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Built target fpsformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Built target gromos96format gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Linking CXX shared module ../../lib64/freefracformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/freefracformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/freefracformat.so CMakeFiles/freefracformat.dir/freefracformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Built target freefracformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgroformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/groformat.dir/groformat.cpp.o -MF CMakeFiles/groformat.dir/groformat.cpp.o.d -o CMakeFiles/groformat.dir/groformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/groformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/groformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Linking CXX shared module ../../lib64/ghemicalformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ghemicalformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/ghemicalformat.so CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Built target ghemicalformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlmpdatformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -MF CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o.d -o CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp: In member function 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp:277:20: warning: unused variable 'length' [-Wunused-variable] 277 | double length=cmax-cmin; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp:367:25: warning: unused variable 'atomid' [-Wunused-variable] 367 | int atomid=5; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp:368:28: warning: unused variable 'charge' [-Wunused-variable] 368 | double charge=0.5; | ^~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlpmdformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -MF CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o.d -o CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp: In member function 'virtual bool OpenBabel::LpmdFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:196:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 196 | if(int(headers.size()-1)!=tokens.size()) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:210:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 210 | for(int i=1 ; i < headers.size() ; ++i) //the first element is HDR | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:243:11: warning: unused variable 'FX' [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:243:32: warning: unused variable 'FY' [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:243:53: warning: unused variable 'FZ' [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp: In member function 'virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:366:18: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 366 | for(int i=0; i < mol.NumAtoms() ; ++i) | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:382:15: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 382 | for(int i=0;i struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Linking CXX shared module ../../lib64/groformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/groformat.so CMakeFiles/groformat.dir/groformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 61%] Built target groformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 57%] Linking CXX shared module ../../lib64/cifformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cifformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/cifformat.so CMakeFiles/cifformat.dir/cifformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 61%] Built target cifformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmcifformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -MF CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o.d -o CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mmcifformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mmcifformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdffformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o -MF CMakeFiles/mdffformat.dir/mdffformat.cpp.o.d -o CMakeFiles/mdffformat.dir/mdffformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp: In member function 'virtual bool OpenBabel::MDFFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:249:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 249 | for(int i = 0; i < atom_t_prop.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:270:33: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 270 | for(unsigned int j = 0; j < atom_t_prop[i].num_of_atoms; j++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp: In member function 'bool OpenBabel::aindx::operator<(const OpenBabel::aindx&) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:329:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 329 | for(int i = 0; i < vs.size(); i++) | ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp: In member function 'virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:388:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 388 | for(int i = 0; i < vs.size(); i++) | ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:443:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, unsigned int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 443 | for (int i = 0; i < atypes_def.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:450:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, unsigned int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 450 | for (int i = 0; i < atypes_def.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:500:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, unsigned int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 500 | for(int j = 0; j < atypes_def.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 60%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmoldenformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o -MF CMakeFiles/moldenformat.dir/moldenformat.cpp.o.d -o CMakeFiles/moldenformat.dir/moldenformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/moldenformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/moldenformat.cpp:35: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/moldenformat.cpp:27: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 61%] Linking CXX shared module ../../lib64/mmodformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mmodformat.so CMakeFiles/mmodformat.dir/mmodformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 61%] Built target mmodformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 61%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpdformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o -MF CMakeFiles/mpdformat.dir/mpdformat.cpp.o.d -o CMakeFiles/mpdformat.dir/mpdformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpdformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpdformat.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpdformat.cpp: In member function 'virtual bool OpenBabel::MPDFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpdformat.cpp:210:42: warning: variable 'idx_true' set but not used [-Wunused-but-set-variable] 210 | bool xml_true=false, pre_true=false, idx_true=false; | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 61%] Linking CXX shared module ../../lib64/lmpdatformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Built target lmpdatformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 61%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpqcformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -MF CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o.d -o CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpqcformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mpqcformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Linking CXX shared module ../../lib64/mpqcformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Built target mpqcformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Linking CXX shared module ../../lib64/mpdformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpdformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Built target mpdformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 61%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o -MF CMakeFiles/msiformat.dir/msiformat.cpp.o.d -o CMakeFiles/msiformat.dir/msiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msiformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msiformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msiformat.cpp: In member function 'virtual bool OpenBabel::MSIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msiformat.cpp:77:17: warning: unused variable 'title' [-Wunused-variable] 77 | const char* title = pConv->GetTitle(); | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 62%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsmsformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o -MF CMakeFiles/msmsformat.dir/msmsformat.cpp.o.d -o CMakeFiles/msmsformat.dir/msmsformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msmsformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msmsformat.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/msmsformat.cpp:26: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 61%] Linking CXX shared module ../../lib64/lpmdformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lpmdformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/lpmdformat.so CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Built target lpmdformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 61%] Linking CXX shared module ../../lib64/moldenformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldenformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Built target moldenformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f 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-flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o -MF CMakeFiles/opendxformat.dir/opendxformat.cpp.o.d -o CMakeFiles/opendxformat.dir/opendxformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp:21: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp:25: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:228:32: warning: 'virtual const std::string& OpenBabel::OBGenericData::GetValue() const' was hidden [-Woverloaded-virtual=] 228 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/griddata.h:76:12: note: by 'OpenBabel::OBGridData::GetValue' 76 | double GetValue (vector3 pos) const; | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 61%] Linking CXX shared module ../../lib64/mmcifformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory 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-DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Doutformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/outformat.dir/outformat.cpp.o -MF CMakeFiles/outformat.dir/outformat.cpp.o.d -o CMakeFiles/outformat.dir/outformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/outformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/outformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 61%] Linking CXX shared module ../../lib64/mdffformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdffformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mdffformat.so CMakeFiles/mdffformat.dir/mdffformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 64%] Built target mdffformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 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/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpcmodelformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -MF CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o.d -o CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pcmodelformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pcmodelformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Linking CXX shared module ../../lib64/opendxformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 65%] Built target opendxformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpointcloudformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -MF CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o.d -o CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp:30: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp:28: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp: In member function 'virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp:226:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 226 | for( int j = 0; j < radius_mult_list.size(); j++ ) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 64%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dposformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/posformat.dir/posformat.cpp.o -MF CMakeFiles/posformat.dir/posformat.cpp.o.d -o CMakeFiles/posformat.dir/posformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/posformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/posformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 65%] Linking CXX shared module ../../lib64/pcmodelformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 66%] Built target pcmodelformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpqrformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o -MF CMakeFiles/pqrformat.dir/pqrformat.cpp.o.d -o CMakeFiles/pqrformat.dir/pqrformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp:16: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp: In function 'double OpenBabel::parseAtomCharge(char*, OBMol&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp:207:13: warning: unused variable 'atom' [-Wunused-variable] 207 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp: In function 'double OpenBabel::parseAtomRadius(char*, OBMol&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp:222:13: warning: unused variable 'atom' [-Wunused-variable] 222 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 64%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dshelxformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o -MF CMakeFiles/shelxformat.dir/shelxformat.cpp.o.d -o CMakeFiles/shelxformat.dir/shelxformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/shelxformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/shelxformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/math/matrix3x3.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/shelxformat.cpp:17: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 65%] Linking CXX shared module ../../lib64/pointcloudformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pointcloudformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pointcloudformat.so CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 66%] Built target pointcloudformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 66%] Linking CXX shared module ../../lib64/posformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/posformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/posformat.so CMakeFiles/posformat.dir/posformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 65%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dstlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o -MF CMakeFiles/stlformat.dir/stlformat.cpp.o.d -o CMakeFiles/stlformat.dir/stlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp:32: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp:28: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp: In function 'void OpenBabel::map_sphere(std::vector&, vector3, double, uint16_t)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp:157:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 157 | for( int i=0 ; i < points.size()-2; i++ ) { | ~~^~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 67%] Built target posformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 66%] Linking CXX shared module ../../lib64/shelxformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Built target shelxformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 63%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbqtformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -MF CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o.d -o CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp: In function 'bool OpenBabel::OutputTree(OBConversion*, OBMol&, std::ostream&, std::map&, unsigned int, bool, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:581:20: warning: unused variable 'child' [-Wunused-variable] 581 | unsigned int child=i; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp: In function 'bool OpenBabel::Separate_preserve_charges(OBMol&, std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:797:9: warning: unused variable 'fragments' [-Wunused-variable] 797 | int fragments = 0; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:750:16: warning: 'unsigned int OpenBabel::AtomsSoFar(const std::map&, unsigned int)' defined but not used [-Wunused-function] 750 | unsigned int AtomsSoFar(const map & tree, unsigned int depth) | ^~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 64%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmileyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o -MF CMakeFiles/smileyformat.dir/smileyformat.cpp.o.d -o CMakeFiles/smileyformat.dir/smileyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:15: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp: In member function 'void OpenBabel::OpenBabelCallback::setChiral(int, Smiley::Chirality, const std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'NotChiral' not handled in switch [-Wswitch] 158 | switch (chirality) { | ^ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TH1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TH2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'AL1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'AL2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'SP1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'SP2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'SP3' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB3' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB4' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB5' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB6' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB7' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB8' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB9' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB10' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB11' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB12' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB13' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB14' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB15' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB16' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB17' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB18' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB19' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'TB20' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH3' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH4' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH5' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH6' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH7' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH8' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH9' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH10' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH11' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH12' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH13' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH14' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH15' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH16' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH17' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH18' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH19' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH20' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH21' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH22' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH23' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH24' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH25' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH26' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH27' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH28' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH29' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:158:14: warning: enumeration value 'OH30' not handled in switch [-Wswitch] In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:26: /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h: In instantiation of 'void Smiley::Parser::processStereochemistry() [with Callback = OpenBabel::OpenBabelCallback]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2707:9: required from 'void Smiley::Parser::parse(const std::string&) [with Callback = OpenBabel::OpenBabelCallback; std::string = std::__cxx11::basic_string]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:370:19: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2642:43: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2642 | if (m_chiralInfo[i].nbrs.size() != expectedValence && m_exceptions & InvalidChiralValence) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h: In instantiation of 'Smiley::Parser::RingBondInfo::RingBondInfo(int, int, bool, bool, bool, std::size_t) [with Callback = OpenBabel::OpenBabelCallback; std::size_t = long unsigned int]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2409:41: required from 'void Smiley::Parser::processRingBond(int, std::size_t) [with Callback = OpenBabel::OpenBabelCallback; std::size_t = long unsigned int]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2429:11: required from 'void Smiley::Parser::parseRingBond() [with Callback = OpenBabel::OpenBabelCallback]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2507:13: required from 'void Smiley::Parser::parseChain() [with Callback = OpenBabel::OpenBabelCallback]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:2698:9: required from 'void Smiley::Parser::parse(const std::string&) [with Callback = OpenBabel::OpenBabelCallback; std::string = std::__cxx11::basic_string]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:370:19: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:986:14: warning: 'Smiley::Parser::RingBondInfo::isExplicit' will be initialized after [-Wreorder] 986 | bool isExplicit; | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:981:21: warning: 'std::size_t Smiley::Parser::RingBondInfo::pos' [-Wreorder] 981 | std::size_t pos; | ^~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smiley.h:974:9: warning: when initialized here [-Wreorder] 974 | RingBondInfo(int number_, int order_, bool isUp_, bool isDown_, | ^~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 68%] Linking CXX shared module ../../lib64/stlformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/stlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/stlformat.so CMakeFiles/stlformat.dir/stlformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Built target stlformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/wlnformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 66%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dthermoformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o -MF CMakeFiles/thermoformat.dir/thermoformat.cpp.o.d -o CMakeFiles/thermoformat.dir/thermoformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/thermoformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/thermoformat.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/thermoformat.cpp:21: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dunichemformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o -MF CMakeFiles/unichemformat.dir/unichemformat.cpp.o.d -o CMakeFiles/unichemformat.dir/unichemformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/unichemformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/unichemformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 66%] Linking CXX shared module ../../lib64/pqrformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Built target pqrformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dviewmolformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -MF CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o.d -o CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/viewmolformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/viewmolformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 67%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtinkerformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -MF CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o.d -o CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp: In function 'int OpenBabel::SetMM3Type(OBAtom*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp:415:11: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 415 | if (b->GetHyb() == 2) // S=C | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp:416:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 416 | countNeighborC++; break; | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dwlnformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o -MF CMakeFiles/wlnformat.dir/wlnformat.cpp.o.d -o CMakeFiles/wlnformat.dir/wlnformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/wlnformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/wlnformat.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/wlnformat.cpp: In member function 'virtual bool OpenBabel::WLNFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/wlnformat.cpp:138:17: warning: unused variable 'title' [-Wunused-variable] 138 | const char* title = pConv->GetTitle(); | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Linking CXX shared module ../../lib64/thermoformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 70%] Built target thermoformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Linking CXX shared module ../../lib64/unichemformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/unichemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 70%] Linking CXX shared module ../../lib64/viewmolformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/viewmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/viewmolformat.so CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 71%] Built target unichemformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 71%] Built target viewmolformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 70%] Linking CXX shared module ../../lib64/tinkerformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxedformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o -MF CMakeFiles/xedformat.dir/xedformat.cpp.o.d -o CMakeFiles/xedformat.dir/xedformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xedformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xedformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 72%] Built target tinkerformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 72%] Linking CXX shared module ../../lib64/xedformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xedformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/xedformat.so CMakeFiles/xedformat.dir/xedformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 72%] Built target xedformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemkinformat.dir/build.make 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-std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -MF CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o.d -o CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/wln-nextmove.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 71%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxyzformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o -MF CMakeFiles/xyzformat.dir/xyzformat.cpp.o.d -o CMakeFiles/xyzformat.dir/xyzformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xyzformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/xyzformat.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 72%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dyasaraformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -MF CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o.d -o CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp:34: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp: In member function 'virtual bool OpenBabel::YOBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp:373:21: warning: variable 'reslen' set but not used [-Wunused-but-set-variable] 373 | int /*samenames,*/reslen,charged; | ^~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 69%] Linking CXX shared module ../../lib64/smileyformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smileyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/smileyformat.so CMakeFiles/smileyformat.dir/smileyformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 72%] Built target smileyformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/rinchiformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux' [ 72%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drxnformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o -MF CMakeFiles/rxnformat.dir/rxnformat.cpp.o.d -o CMakeFiles/rxnformat.dir/rxnformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp:26: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp:18: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp: In member function 'virtual bool OpenBabel::RXNFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp:196:22: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 196 | for (int i=0; i