<86>Apr 6 03:21:25 userdel[865371]: delete user 'rooter'
<86>Apr 6 03:21:25 userdel[865371]: removed group 'rooter' owned by 'rooter'
<86>Apr 6 03:21:25 userdel[865371]: removed shadow group 'rooter' owned by 'rooter'
<86>Apr 6 03:21:25 groupadd[865380]: group added to /etc/group: name=rooter, GID=711
<86>Apr 6 03:21:25 groupadd[865380]: group added to /etc/gshadow: name=rooter
<86>Apr 6 03:21:25 groupadd[865380]: new group: name=rooter, GID=711
<86>Apr 6 03:21:25 useradd[865384]: new user: name=rooter, UID=711, GID=711, home=/root, shell=/bin/bash
<86>Apr 6 03:21:25 userdel[865392]: delete user 'builder'
<86>Apr 6 03:21:25 userdel[865392]: removed group 'builder' owned by 'builder'
<86>Apr 6 03:21:25 userdel[865392]: removed shadow group 'builder' owned by 'builder'
<86>Apr 6 03:21:25 groupadd[865400]: group added to /etc/group: name=builder, GID=712
<86>Apr 6 03:21:25 groupadd[865400]: group added to /etc/gshadow: name=builder
<86>Apr 6 03:21:25 groupadd[865400]: new group: name=builder, GID=712
<86>Apr 6 03:21:25 useradd[865404]: new user: name=builder, UID=712, GID=712, home=/usr/src, shell=/bin/bash
warning: Macro %cmake not found
warning: Macro %cmake_build not found
warning: Macro %cmake_install not found
<13>Apr 6 03:21:31 rpmi: libjpeg-2:2.1.2-alt1.2 sisyphus+300827.100.2.1 1653916633 installed
<13>Apr 6 03:21:31 rpmi: libpng16-1.6.39-alt1 sisyphus+310490.100.1.1 1669195200 installed
<13>Apr 6 03:21:31 rpmi: libwayland-client-1.22.0-alt1.1 sisyphus+318010.100.1.1 1680606299 installed
<13>Apr 6 03:21:31 rpmi: libexpat-2.5.0-alt1 sisyphus+309227.100.1.1 1667075764 installed
<13>Apr 6 03:21:31 rpmi: libogg-1.3.5-alt1 sisyphus+278100.3400.1.1 1626058929 installed
<13>Apr 6 03:21:31 rpmi: libgudev-1:237-alt1 sisyphus+282754.100.1.1 1629006690 installed
<13>Apr 6 03:21:31 rpmi: libwebp7-1.3.0-alt1 sisyphus+313492.100.1.1 1673749693 installed
<13>Apr 6 03:21:31 rpmi: libboost_system1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:31 rpmi: libvorbis-1.3.7-alt1 sisyphus+275738.100.1.1 1624751601 installed
<13>Apr 6 03:21:31 rpmi: libwayland-egl-4:18.1.0-alt1.1 sisyphus+318010.100.1.1 1680606299 installed
<13>Apr 6 03:21:31 rpmi: liblcms2-2.15-alt1 sisyphus+316039.100.1.1 1677666328 installed
<13>Apr 6 03:21:31 rpmi: perl-HTTP-Date-6.05-alt1 sisyphus+258981.100.1.1 1601542386 installed
<13>Apr 6 03:21:31 rpmi: libraw1394-11-2.1.2-alt1 sisyphus+278262.100.1.1 1626081867 installed
<13>Apr 6 03:21:31 rpmi: libwayland-server-1.22.0-alt1.1 sisyphus+318010.100.1.1 1680606299 installed
<13>Apr 6 03:21:31 rpmi: libgomp1-12.2.1-alt1 sisyphus+317240.100.2.1 1679582373 installed
<13>Apr 6 03:21:31 rpmi: libfribidi-1.0.12-alt1 sisyphus+298746.100.1.1 1650435949 installed
<13>Apr 6 03:21:31 rpmi: libopus-1.3.1-alt158.gbce1f392.1 sisyphus+307793.100.2.1 1664814187 installed
<13>Apr 6 03:21:31 rpmi: libopenjpeg2.0-2.5.0-alt1 sisyphus+299926.300.3.1 1652478843 installed
<13>Apr 6 03:21:32 rpmi: libicu72-1:7.2.1-alt1 sisyphus+308882.100.1.1 1666532090 installed
<13>Apr 6 03:21:32 rpmi: xorg-proto-devel-2022.1-alt1 sisyphus+299488.100.1.1 1651731532 installed
<13>Apr 6 03:21:32 rpmi: libtheora-2:1.1.1-alt6 sisyphus+277967.100.1.1 1625928129 installed
<13>Apr 6 03:21:32 rpmi: libwxBase3.0-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669833 installed
<13>Apr 6 03:21:32 rpmi: libhyphen-2.8.8-alt1 sisyphus+278186.100.1.1 1626075927 installed
<13>Apr 6 03:21:32 rpmi: libepoxy-1.5.10-alt1 sisyphus+296853.200.2.1 1647631866 installed
<13>Apr 6 03:21:32 rpmi: libsqlite3-3.41.0-alt1 sisyphus+315678.100.1.1 1677187064 installed
<13>Apr 6 03:21:32 rpmi: perl-XML-NamespaceSupport-1.12-alt1 1491296348 installed
<13>Apr 6 03:21:32 rpmi: libusb-1.0.26-alt2 sisyphus+305525.100.1.1 1660924427 installed
<13>Apr 6 03:21:32 rpmi: liborc-0.4.33-alt1 sisyphus+309862.200.2.1 1671193014 installed
<13>Apr 6 03:21:32 rpmi: libserd-0.30.10-alt1_3 sisyphus+288138.100.1.1 1635175831 installed
<13>Apr 6 03:21:32 rpmi: libspeex-1.2-alt2 sisyphus+287335.100.1.1 1634381369 installed
<13>Apr 6 03:21:32 rpmi: liblame-3.100-alt1 sisyphus+276241.100.1.2 1624925657 installed
<13>Apr 6 03:21:32 rpmi: libgsm-1.0.17-alt1 sisyphus+275359.100.2.1 1624907612 installed
<13>Apr 6 03:21:32 rpmi: libidn2-2.3.4-alt1 sisyphus+309023.100.1.1 1666791084 installed
<13>Apr 6 03:21:32 rpmi: libnettle8-3.8.1-alt2 sisyphus+308213.100.1.1 1665439423 installed
<13>Apr 6 03:21:32 rpmi: libtasn1-4.19.0-alt1 sisyphus+305700.100.1.1 1661359624 installed
<13>Apr 6 03:21:32 rpmi: libatk-2.48.0-alt1 sisyphus+317076.400.1.1 1679344508 installed
<13>Apr 6 03:21:32 rpmi: libsord-0.16.8-alt1_2 sisyphus+286960.100.1.1 1634067441 installed
<13>Apr 6 03:21:32 rpmi: libdc1394-22-2.2.5-alt1.1 sisyphus+311484.100.1.1 1670647146 installed
<13>Apr 6 03:21:32 rpmi: libflac8-1.3.3.0.79.37d1-alt2 sisyphus+278100.1400.1.1 1626058195 installed
<13>Apr 6 03:21:32 rpmi: libwayland-cursor-1.22.0-alt1.1 sisyphus+318010.100.1.1 1680606299 installed
<13>Apr 6 03:21:33 rpmi: libv4l-1.24.1-alt1 sisyphus+315985.200.2.1 1677588853 installed
<13>Apr 6 03:21:33 rpmi: libdv-1.0.0-alt6 sisyphus+286805.100.2.1 1633968015 installed
<13>Apr 6 03:21:33 rpmi: libxslt-1.1.37-alt1 sisyphus+307481.100.1.1 1664360521 installed
<13>Apr 6 03:21:33 rpmi: libxkbcommon-1.5.0-alt1 sisyphus+312911.100.1.1 1673035568 installed
<13>Apr 6 03:21:33 rpmi: libwpe-1.14.1-alt1 sisyphus+314599.100.1.1 1675418204 installed
<13>Apr 6 03:21:33 rpmi: perl-LWP-MediaTypes-6.04-alt1 sisyphus+225468.100.1.1 1553186684 installed
<13>Apr 6 03:21:33 rpmi: perl-Compress-Raw-Zlib-2.204-alt1 sisyphus+314931.100.1.1 1675930914 installed
<13>Apr 6 03:21:33 rpmi: perl-libnet-1:3.15-alt1 sisyphus+317310.100.1.1 1679580208 installed
<13>Apr 6 03:21:33 rpmi: perl-XML-SAX-Base-1.09-alt1 1494364363 installed
<13>Apr 6 03:21:33 rpmi: libjack-1:1.9.22-alt1 sisyphus+316501.200.2.1 1678463938 installed
<13>Apr 6 03:21:33 rpmi: libSDL2-2.26.4-alt1 sisyphus+316689.100.1.1 1678699901 installed
<13>Apr 6 03:21:33 rpmi: libdvdread8-6.1.3-alt1 sisyphus+302642.100.1.1 1656163148 installed
<13>Apr 6 03:21:33 rpmi: ilmbase25-common-2.5.6-alt2 sisyphus+279640.100.1.1 1626639160 installed
<13>Apr 6 03:21:33 rpmi: libiex25-2.5.6-alt2 sisyphus+279640.100.1.1 1626639160 installed
<13>Apr 6 03:21:33 rpmi: libhalf25-2.5.6-alt2 sisyphus+279640.100.1.1 1626639160 installed
<13>Apr 6 03:21:33 rpmi: libzeromq-4.3.4-alt2 sisyphus+305424.100.1.1 1660736874 installed
<13>Apr 6 03:21:33 rpmi: libmpg123-1.31.3-alt1 sisyphus+317036.100.1.1 1679313680 installed
<13>Apr 6 03:21:33 rpmi: libsndfile-1.1.0-alt1 sisyphus+306371.40.3.1 1662942389 installed
<13>Apr 6 03:21:33 rpmi: libbs2b-3.1.0-alt1.4 sisyphus+284589.100.1.1 1630750787 installed
<13>Apr 6 03:21:33 rpmi: libvpx6-1.11.0-alt2 sisyphus+294379.500.5.1 1644490611 installed
<13>Apr 6 03:21:33 rpmi: libglvnd-7:1.6.0-alt1 sisyphus+310974.100.1.1 1669906757 installed
<13>Apr 6 03:21:33 rpmi: libtwolame-0.4.0-alt1 sisyphus+277783.100.1.1 1625798476 installed
<13>Apr 6 03:21:33 rpmi: libdav1d-0.9.2-alt1 sisyphus+291906.40.5.3 1639431315 installed
<13>Apr 6 03:21:33 rpmi: libaom3-3.5.0-alt1 sisyphus+312085.100.1.1 1671551546 installed
<13>Apr 6 03:21:33 rpmi: libgraphite2-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605111 installed
<13>Apr 6 03:21:33 rpmi: zlib-devel-1.2.13-alt1 sisyphus+309409.200.2.1 1667402043 installed
<13>Apr 6 03:21:33 rpmi: libgdbm-1.8.3-alt10 sisyphus+278100.1600.1.1 1626058413 installed
<13>Apr 6 03:21:33 rpmi: xml-utils-1:2.10.3-alt1 sisyphus+308392.100.3.1 1666013203 installed
<13>Apr 6 03:21:33 rpmi: libbrotlicommon-1.0.9-alt2 sisyphus+278430.100.1.2 1626213212 installed
<13>Apr 6 03:21:33 rpmi: libbrotlidec-1.0.9-alt2 sisyphus+278430.100.1.2 1626213212 installed
<13>Apr 6 03:21:33 rpmi: libharfbuzz-7.0.1-alt1 sisyphus+315589.100.1.1 1676975783 installed
<13>Apr 6 03:21:33 rpmi: libfreetype-2.13.0-alt1 sisyphus+315092.100.1.1 1676198644 installed
<13>Apr 6 03:21:33 rpmi: libfontconfig1-2.14.2-alt5 sisyphus+317300.100.1.1 1679578083 installed
<13>Apr 6 03:21:33 rpmi: libass9-0.17.1-alt1 sisyphus+315891.100.1.1 1677487408 installed
<13>Apr 6 03:21:33 rpmi: libharfbuzz-icu-7.0.1-alt1 sisyphus+315589.100.1.1 1676975783 installed
<13>Apr 6 03:21:33 rpmi: libp11-kit-0.24.1-alt1 sisyphus+293720.100.1.1 1642535264 installed
<13>Apr 6 03:21:33 rpmi: libXau-1.0.11-alt1 sisyphus+311428.100.1.1 1670577439 installed
<13>Apr 6 03:21:33 rpmi: libXau-devel-1.0.11-alt1 sisyphus+311428.100.1.1 1670577439 installed
<13>Apr 6 03:21:33 rpmi: fontconfig-2.14.2-alt5 sisyphus+317300.100.1.1 1679578083 installed
Updating fonts cache: <29>Apr 6 03:21:34 fontconfig: Updating fonts cache: succeeded
[ DONE ]
<13>Apr 6 03:21:34 rpmi: libharfbuzz-gobject-7.0.1-alt1 sisyphus+315589.100.1.1 1676975783 installed
<13>Apr 6 03:21:34 rpmi: libbrotlienc-1.0.9-alt2 sisyphus+278430.100.1.2 1626213212 installed
<13>Apr 6 03:21:34 rpmi: libwoff2-1.0.2-alt3 sisyphus+302729.100.1.1 1656351540 installed
<13>Apr 6 03:21:34 rpmi: rpm-build-gir-0.7.3-alt3 sisyphus+242150.100.1.1 1575312005 installed
<13>Apr 6 03:21:34 rpmi: libgdbm-devel-1.8.3-alt10 sisyphus+278100.1600.1.1 1626058413 installed
<13>Apr 6 03:21:34 rpmi: perl-devel-1:5.34.1-alt1 sisyphus+303178.100.1.1 1656953516 installed
<13>Apr 6 03:21:34 rpmi: swig-data-1:4.0.2-alt4 sisyphus+302321.100.1.1 1655603940 installed
<13>Apr 6 03:21:34 rpmi: libpng-devel-1.6.39-alt1 sisyphus+310490.100.1.1 1669195200 installed
<13>Apr 6 03:21:34 rpmi: libgraphite2-devel-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605111 installed
<13>Apr 6 03:21:35 rpmi: libsamplerate-0.2.2-alt1 sisyphus+284642.100.1.1 1630906301 installed
<13>Apr 6 03:21:35 rpmi: libinstpatch-1.1.6-alt1.1 sisyphus+279572.100.1.2 1626605094 installed
<13>Apr 6 03:21:35 rpmi: libilmthread25-2.5.6-alt2 sisyphus+279640.100.1.1 1626639160 installed
<13>Apr 6 03:21:35 rpmi: libimath25-2.5.6-alt2 sisyphus+279640.100.1.1 1626639160 installed
<13>Apr 6 03:21:35 rpmi: libilmimf25-2.5.6-alt5 sisyphus+314595.3240.24.1 1678352837 installed
<13>Apr 6 03:21:35 rpmi: libdvdnav-6.1.1-alt1 sisyphus+279367.100.1.1 1626478896 installed
<13>Apr 6 03:21:35 rpmi: libwxGTK3.0-sound_sdlu-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669833 installed
<13>Apr 6 03:21:35 rpmi: libsratom-0.6.6-alt1_1 sisyphus+278712.200.4.2 1626176333 installed
<13>Apr 6 03:21:35 rpmi: liblilv-0.24.12-alt1_3 sisyphus+295914.100.1.1 1645726269 installed
<13>Apr 6 03:21:35 rpmi: libhogweed6-3.8.1-alt2 sisyphus+308213.100.1.1 1665439423 installed
<13>Apr 6 03:21:35 rpmi: libgnutls30-3.7.9-alt1 sisyphus+315353.100.1.1 1676639068 installed
<13>Apr 6 03:21:35 rpmi: libngtcp2-0.13.1-alt1 sisyphus+317411.100.1.1 1679680596 installed
<13>Apr 6 03:21:35 rpmi: hyphen-en-2.8.8-alt1 sisyphus+278186.100.1.1 1626075927 installed
<13>Apr 6 03:21:35 rpmi: hyphen-ru-20020727-alt3 sisyphus+276848.100.1.1 1625243550 installed
<13>Apr 6 03:21:35 rpmi: libwxBase3.0-devel-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669833 installed
<13>Apr 6 03:21:35 rpmi: icu-utils-1:7.2.1-alt1 sisyphus+308882.100.1.1 1666532090 installed
<13>Apr 6 03:21:35 rpmi: libicu-devel-1:7.2.1-alt1 sisyphus+308882.100.1.1 1666532090 installed
<13>Apr 6 03:21:35 rpmi: libvidstab-1.1.0-alt2.1 sisyphus+279558.100.1.2 1626596087 installed
<13>Apr 6 03:21:35 rpmi: libsoundtouch-2.3.2-alt1 sisyphus+314961.100.1.1 1675954593 installed
<13>Apr 6 03:21:35 rpmi: libavc1394-0.5.4-alt2 sisyphus+284572.100.1.1 1630712939 installed
<13>Apr 6 03:21:35 rpmi: libiec61883-1.2.0-alt1.qa1 sisyphus+275365.100.1.2 1624491850 installed
<13>Apr 6 03:21:35 rpmi: perl-File-Listing-6.15-alt1 sisyphus+298606.100.1.1 1650203737 installed
<13>Apr 6 03:21:35 rpmi: libboost_atomic1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:35 rpmi: libboost_contract1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:35 rpmi: libboost_chrono1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:35 rpmi: libboost_timer1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:35 rpmi: libboost_thread1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:35 rpmi: libboost_type_erasure1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:35 rpmi: libboost_filesystem1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:35 rpmi: libyuv-0.0.1805-alt1.1 sisyphus+292944.100.1.1 1641110695 installed
<13>Apr 6 03:21:35 rpmi: libncurses-6.3.20220618-alt1 sisyphus+302449.100.1.1 1655835246 installed
<13>Apr 6 03:21:35 rpmi: libtinfo-devel-6.3.20220618-alt1 sisyphus+302449.100.1.1 1655835246 installed
<13>Apr 6 03:21:35 rpmi: libncurses-devel-6.3.20220618-alt1 sisyphus+302449.100.1.1 1655835246 installed
<13>Apr 6 03:21:35 rpmi: libmspack-0.6-alt2 sisyphus+279013.100.1.1 1626353200 installed
<13>Apr 6 03:21:35 rpmi: libevdev-1.13.0-alt1 sisyphus+304671.100.1.1 1659461427 installed
<13>Apr 6 03:21:35 rpmi: libhunspell-1.7.0-alt1 sisyphus+276382.100.1.1 1624989597 installed
<13>Apr 6 03:21:35 rpmi: librav1e-0.6.3-alt1 sisyphus+313168.100.1.1 1673426867 installed
<13>Apr 6 03:21:35 rpmi: libavif-0.11.1-alt1 sisyphus+314936.100.1.1 1675934894 installed
<13>Apr 6 03:21:35 rpmi: libaspell-0.60.8-alt2 sisyphus+308375.100.1.1 1665751741 installed
<13>Apr 6 03:21:35 rpmi: libenchant2-2.3.4-alt1 sisyphus+315486.100.1.1 1676846837 installed
<13>Apr 6 03:21:35 rpmi: libICE-1.1.1-alt1 sisyphus+311428.500.1.1 1670577555 installed
<13>Apr 6 03:21:35 rpmi: libSM-1.2.4-alt1 sisyphus+312057.200.1.1 1671526916 installed
<13>Apr 6 03:21:35 rpmi: libwavpack-5.6.0-alt1 sisyphus+312784.100.1.1 1672495703 installed
<13>Apr 6 03:21:35 rpmi: libtag-1.12-alt1 sisyphus+277260.100.1.1 1625423537 installed
<13>Apr 6 03:21:35 rpmi: libvisual0.4-0.4.0-alt3 sisyphus+276250.100.1.2 1624927462 installed
<13>Apr 6 03:21:35 rpmi: libgraphene-1.10.8-alt1 sisyphus+296855.100.1.1 1647633383 installed
<13>Apr 6 03:21:35 rpmi: libcdparanoia-1:10.2-alt6 sisyphus+278521.100.1.1 1626108244 installed
<13>Apr 6 03:21:35 rpmi: libwebrtc-0.3-alt2 sisyphus+277616.100.1.1 1625719132 installed
<13>Apr 6 03:21:35 rpmi: libvo-amrwbenc-0.1.3-alt1 sisyphus+275410.100.1.2 1624504610 installed
<13>Apr 6 03:21:35 rpmi: libvo-aacenc-0.1.3-alt2 sisyphus+285812.100.1.1 1632410909 installed
<13>Apr 6 03:21:35 rpmi: libsrtp2-2.5.0-alt1 sisyphus+315000.100.1.1 1676038238 installed
<13>Apr 6 03:21:35 rpmi: libsbc-1.2-alt1.1 sisyphus+278210.100.1.1 1626077400 installed
<13>Apr 6 03:21:35 rpmi: libopenh264-2.3.1-alt1.1 sisyphus+311295.100.1.1 1670335709 installed
<13>Apr 6 03:21:35 rpmi: libtbb-2021.5.0-alt1 sisyphus+294292.60.6.1 1643799509 installed
<13>Apr 6 03:21:35 rpmi: libprotobuf32-3.21.12-alt2 sisyphus+315327.100.1.1 1676566806 installed
<13>Apr 6 03:21:35 rpmi: libglog-0.5.0-alt1 sisyphus+291409.100.1.1 1638655127 installed
<13>Apr 6 03:21:35 rpmi: libmodplug-0.8.9.0-alt1 sisyphus+275375.100.2.2 1624495419 installed
<13>Apr 6 03:21:35 rpmi: libyajl-2.1.0-alt2 sisyphus+288162.100.1.1 1635206415 installed
<13>Apr 6 03:21:35 rpmi: libkate-0.4.1-alt1.6 sisyphus+282639.100.1.1 1628935971 installed
<13>Apr 6 03:21:35 rpmi: usbids-20230120-alt1 sisyphus+313807.100.1.1 1674256178 installed
<13>Apr 6 03:21:35 rpmi: gtk+3-themes-incompatible-3.20-alt3 1461944560 installed
<13>Apr 6 03:21:35 rpmi: perl-Try-Tiny-0.31-alt1 sisyphus+290597.100.1.1 1637915507 installed
<13>Apr 6 03:21:35 rpmi: perl-IO-Socket-IP-0.41-alt1 sisyphus+259012.100.1.2 1601553446 installed
<13>Apr 6 03:21:35 rpmi: perl-Compress-Raw-Bzip2-2.204-alt1 sisyphus+314930.100.1.1 1675930902 installed
<13>Apr 6 03:21:36 rpmi: perl-IO-Compress-Brotli-2:0.004001-alt3 sisyphus+302124.100.1.1 1655283093 installed
<13>Apr 6 03:21:36 rpmi: perl-Clone-0.46-alt1 sisyphus+308850.100.1.3 1666451819 installed
<13>Apr 6 03:21:36 rpmi: perl-HTML-Tagset-3.20-alt2 1317725093 installed
<13>Apr 6 03:21:36 rpmi: perl-Term-ANSIColor-5.01-alt1 sisyphus+244783.100.1.2 1579747505 installed
<13>Apr 6 03:21:36 rpmi: perl-Data-Dump-1.25-alt1 sisyphus+276551.100.1.1 1625126880 installed
<13>Apr 6 03:21:36 rpmi: perl-Filter-1.64-alt1 sisyphus+305464.100.1.1 1660815327 installed
<13>Apr 6 03:21:36 rpmi: perl-Encode-3.19-alt1 sisyphus+304776.100.1.1 1659623409 installed
<13>Apr 6 03:21:36 rpmi: perl-URI-5.17-alt1 sisyphus+310739.100.1.1 1669616836 installed
<13>Apr 6 03:21:36 rpmi: perl-IO-Compress-2.204-alt1 sisyphus+315114.100.1.1 1676225908 installed
<13>Apr 6 03:21:36 rpmi: perl-Net-HTTP-6.22-alt1 sisyphus+294185.100.1.1 1643275428 installed
<13>Apr 6 03:21:36 rpmi: perl-HTML-Parser-3.81-alt1 sisyphus+314462.100.1.1 1675193797 installed
<13>Apr 6 03:21:36 rpmi: perl-WWW-RobotRules-6.02-alt1 1329756211 installed
<13>Apr 6 03:21:36 rpmi: perl-Encode-Locale-1.05-alt1 1444608613 installed
<13>Apr 6 03:21:36 rpmi: perl-IO-HTML-1.004-alt1 sisyphus+258983.100.1.1 1601542619 installed
<13>Apr 6 03:21:36 rpmi: perl-HTTP-Message-6.44-alt1 sisyphus+309106.100.1.1 1666913573 installed
<13>Apr 6 03:21:36 rpmi: perl-HTTP-Cookies-6.10-alt1 sisyphus+264349.100.1.1 1609891183 installed
<13>Apr 6 03:21:36 rpmi: perl-HTTP-Negotiate-6.01-alt1 1329760563 installed
<13>Apr 6 03:21:36 rpmi: perl-libwww-6.68-alt1 sisyphus+316051.100.1.1 1677673156 installed
<13>Apr 6 03:21:36 rpmi: perl-XML-LibXML-2.0208-alt2 sisyphus+308580.100.1.1 1666065517 installed
<13>Apr 6 03:21:36 rpmi: perl-XML-SAX-1.02-alt1 sisyphus+232322.100.1.1 1560758406 installed
<13>Apr 6 03:21:36 rpmi: perl-XML-Simple-2.25-alt2 sisyphus+257498.100.1.1 1599324034 installed
<13>Apr 6 03:21:36 rpmi: icon-naming-utils-0.8.90-alt1 sisyphus+276851.100.1.1 1625243947 installed
<13>Apr 6 03:21:36 rpmi: icon-theme-adwaita-44.0-alt1 sisyphus+317076.600.1.1 1679344664 installed
<13>Apr 6 03:21:36 rpmi: libfreeaptx-0.1.1-alt1 sisyphus+282022.100.1.1 1628182661 installed
<13>Apr 6 03:21:36 rpmi: libasyncns-0.8-alt2.qa1 sisyphus+275091.100.1.1 1624402241 installed
<13>Apr 6 03:21:36 rpmi: liblash-1:0.5.4-alt1_49 sisyphus+312428.100.1.1 1671879539 installed
<13>Apr 6 03:21:36 rpmi: libfaad2-2.10.1-alt1 sisyphus+317706.100.1.1 1680093777 installed
<13>Apr 6 03:21:36 rpmi: libdca0-0.0.5-alt4.qa1 sisyphus+275349.100.1.2 1624487408 installed
<13>Apr 6 03:21:36 rpmi: libgme-0.6.3-alt2 sisyphus+293048.100.1.1 1641452306 installed
<13>Apr 6 03:21:36 rpmi: libudfread-1.1.2-alt2 sisyphus+286325.100.1.1 1633263312 installed
<13>Apr 6 03:21:36 rpmi: libbluray-1.3.4-alt1 sisyphus+310888.100.1.1 1669800489 installed
<13>Apr 6 03:21:36 rpmi: libfftw3-common-3.3.8-alt2 sisyphus+278100.1300.1.1 1626057222 installed
<13>Apr 6 03:21:36 rpmi: libfftw3-3.3.8-alt2 sisyphus+278100.1300.1.1 1626057222 installed
<13>Apr 6 03:21:36 rpmi: libchromaprint1-1.5.0-alt2 sisyphus+286097.100.1.1 1632900907 installed
<13>Apr 6 03:21:36 rpmi: librubberband-3.1.2-alt1 sisyphus+311187.100.1.1 1670229533 installed
<13>Apr 6 03:21:36 rpmi: vulkan-filesystem-1.3.243-alt1 sisyphus+317339.500.2.1 1679601909 installed
<13>Apr 6 03:21:36 rpmi: libvulkan1-1.3.243-alt1 sisyphus+317339.500.2.1 1679601909 installed
<13>Apr 6 03:21:36 rpmi: libsoxr-0.1.3-alt1.1 sisyphus+317908.100.1.1 1680415073 installed
<13>Apr 6 03:21:36 rpmi: libxvid-1.3.7-alt1 sisyphus+292833.100.1.1 1640949610 installed
<13>Apr 6 03:21:36 rpmi: libnuma-2.0.14-alt2 sisyphus+278485.100.1.1 1626104244 installed
<13>Apr 6 03:21:36 rpmi: libx265-199-3.5-alt1.1 sisyphus+277560.100.1.1 1625697230 installed
<13>Apr 6 03:21:36 rpmi: libx264-164-alt1 sisyphus+310969.100.5.1 1669990175 installed
<13>Apr 6 03:21:36 rpmi: libxshmfence-1.3.2-alt1 sisyphus+311428.400.1.1 1670577525 installed
<13>Apr 6 03:21:36 rpmi: libpciaccess-1:0.17-alt1 sisyphus+308663.300.1.1 1666168260 installed
<13>Apr 6 03:21:36 rpmi: libdrm-1:2.4.115-alt1 sisyphus+315873.100.1.1 1677481746 installed
<13>Apr 6 03:21:36 rpmi: libgbm-4:23.0.1-alt1 sisyphus+317620.100.1.1 1680001072 installed
<13>Apr 6 03:21:36 rpmi: libsnappy-1.1.7-alt1 sisyphus+276400.100.1.2 1625016393 installed
<13>Apr 6 03:21:36 rpmi: libdatrie-0.2.13-alt1_2 sisyphus+285649.100.1.1 1632260802 installed
<13>Apr 6 03:21:36 rpmi: libthai-0.1.29-alt1_1 sisyphus+292947.100.1.1 1641111915 installed
<13>Apr 6 03:21:36 rpmi: libjbig-2.1-alt1 sisyphus+276068.100.1.1 1624815400 installed
<13>Apr 6 03:21:36 rpmi: libdeflate-1.18-alt1 sisyphus+317484.100.1.1 1679768609 installed
<13>Apr 6 03:21:36 rpmi: libtiff5-4.4.0-alt3 sisyphus+316986.100.1.1 1679241632 installed
<13>Apr 6 03:21:36 rpmi: libgdk-pixbuf-locales-2.42.10-alt1 sisyphus+308991.100.1.1 1666721198 installed
<13>Apr 6 03:21:36 rpmi: libopencore-amrwb0-0.1.6-alt1 sisyphus+307923.100.1.1 1665032483 installed
<13>Apr 6 03:21:36 rpmi: libopencore-amrnb0-0.1.6-alt1 sisyphus+307923.100.1.1 1665032483 installed
<13>Apr 6 03:21:36 rpmi: libcodec2-1.0.5-alt1 sisyphus+307919.100.1.1 1665032098 installed
<13>Apr 6 03:21:36 rpmi: libproxy-0.4.18-alt1 sisyphus+307602.100.1.1 1664480603 installed
<13>Apr 6 03:21:36 rpmi: libjson-c5-0.15-alt1.1 sisyphus+279547.100.1.2 1626594466 installed
<13>Apr 6 03:21:36 rpmi: libCharLS2-2.0.0-alt1_3 sisyphus+276376.100.1.1 1624988382 installed
<13>Apr 6 03:21:36 rpmi: gcc-c++-common-1.4.27-alt1 sisyphus+278099.1300.1.1 1626028636 installed
<13>Apr 6 03:21:37 rpmi: libstdc++12-devel-12.2.1-alt1 sisyphus+317240.100.2.1 1679582373 installed
<13>Apr 6 03:21:38 rpmi: gcc12-c++-12.2.1-alt1 sisyphus+317240.100.2.1 1679582373 installed
<13>Apr 6 03:21:38 rpmi: libpixman-3:0.42.2-alt1 sisyphus+309549.100.1.1 1667649219 installed
<13>Apr 6 03:21:38 rpmi: libmpdec3-2.5.1-alt3 sisyphus+314490.500.5.1 1675432004 installed
<13>Apr 6 03:21:38 rpmi: libdevmapper-1.02.193-alt1 sisyphus+317421.100.1.1 1679684411 installed
<13>Apr 6 03:21:38 rpmi: mount-2.38.1-alt1 sisyphus+308470.100.1.1 1665845329 installed
<13>Apr 6 03:21:38 rpmi: losetup-2.38.1-alt1 sisyphus+308470.100.1.1 1665845329 installed
<13>Apr 6 03:21:38 rpmi: lsblk-2.38.1-alt1 sisyphus+308470.100.1.1 1665845329 installed
<13>Apr 6 03:21:38 rpmi: desktop-file-utils-0.26-alt3 sisyphus+297027.100.1.1 1648023315 installed
<13>Apr 6 03:21:38 rpmi: shared-mime-info-2.2-alt1 sisyphus+297388.100.1.1 1648466615 installed
<13>Apr 6 03:21:38 rpmi: gsettings-desktop-schemas-data-44.0-alt1 sisyphus+317076.300.1.1 1679344430 installed
<13>Apr 6 03:21:38 rpmi: libgio-2.76.1-alt1 sisyphus+317249.100.1.1 1679515552 installed
<13>Apr 6 03:21:38 rpmi: gsettings-desktop-schemas-44.0-alt1 sisyphus+317076.300.1.1 1679344430 installed
<13>Apr 6 03:21:38 rpmi: libgstreamer1.0-1.22.1-alt1 sisyphus+316236.100.1.1 1677974954 installed
<13>Apr 6 03:21:38 rpmi: libgdk-pixbuf-2.42.10-alt1 sisyphus+308991.100.1.1 1666721198 installed
<13>Apr 6 03:21:38 rpmi: gobject-introspection-1.76.1-alt1 sisyphus+317264.100.1.1 1679555243 installed
<13>Apr 6 03:21:38 rpmi: libgstreamer1.0-gir-1.22.1-alt1 sisyphus+316236.100.1.1 1677974954 installed
<13>Apr 6 03:21:38 rpmi: gstreamer1.0-1.22.1-alt1 sisyphus+316236.100.1.1 1677974954 installed
<13>Apr 6 03:21:38 rpmi: gtk4-update-icon-cache-4.10.1-alt1 sisyphus+317076.700.1.1 1679344904 installed
<13>Apr 6 03:21:38 rpmi: libnotify-0.8.2-alt1 sisyphus+316677.100.1.1 1678691818 installed
<13>Apr 6 03:21:38 rpmi: libdconf-0.40.0-alt1 sisyphus+279299.100.1.2 1626495967 installed
<13>Apr 6 03:21:38 rpmi: libjson-glib-1.6.6-alt1 sisyphus+299768.200.2.1 1652264093 installed
<13>Apr 6 03:21:38 rpmi: libgusb-0.4.5-alt1 sisyphus+314918.100.1.1 1675925445 installed
<13>Apr 6 03:21:38 rpmi: libcolord-1.4.6-alt1 sisyphus+296000.100.1.1 1646050421 installed
<13>Apr 6 03:21:38 rpmi: libmanette-0.2.6-alt1 sisyphus+278498.100.1.3 1626233251 installed
<13>Apr 6 03:21:38 rpmi: libsecret-0.20.5-alt1 sisyphus+295994.200.1.1 1646042352 installed
<13>Apr 6 03:21:38 rpmi: xdg-dbus-proxy-0.1.4-alt1 sisyphus+299818.100.1.1 1652344956 installed
<13>Apr 6 03:21:38 rpmi: libwpebackend-fdo-1.14.2-alt1 sisyphus+317208.100.1.1 1679490350 installed
<13>Apr 6 03:21:38 rpmi: systemd-modules-common-1:252.7-alt1 sisyphus+316321.100.1.1 1678130436 installed
<13>Apr 6 03:21:38 rpmi: systemd-sysctl-common-1:252.7-alt1 sisyphus+316321.100.1.1 1678130436 installed
<13>Apr 6 03:21:38 rpmi: systemd-tmpfiles-common-1:252.7-alt1 sisyphus+316321.100.1.1 1678130436 installed
<13>Apr 6 03:21:38 rpmi: systemd-utils-filetriggers-1:252.7-alt1 sisyphus+316321.100.1.1 1678130436 installed
<13>Apr 6 03:21:38 rpmi: rpm-macros-cmake-3.23.2-alt2 sisyphus+317703.100.1.1 1680090547 installed
<13>Apr 6 03:21:38 rpmi: cmake-modules-3.23.2-alt2 sisyphus+317703.100.1.1 1680090547 installed
<13>Apr 6 03:21:38 rpmi: libuv-1.44.2-alt1 sisyphus+303845.100.1.1 1658053885 installed
<13>Apr 6 03:21:38 rpmi: librhash-1.3.5-alt3 sisyphus+286141.40.2.1 1632982456 installed
<13>Apr 6 03:21:38 rpmi: libjsoncpp24-1.9.4-alt2 sisyphus+286441.100.1.1 1633444232 installed
<13>Apr 6 03:21:38 rpmi: publicsuffix-list-dafsa-20221208-alt1 sisyphus+313597.100.1.1 1673961759 installed
<13>Apr 6 03:21:38 rpmi: libpsl-0.21.2-alt1 sisyphus+312536.100.1.1 1672131178 installed
<13>Apr 6 03:21:38 rpmi: libnghttp3-0.9.0-alt1 sisyphus+317166.100.1.1 1679409330 installed
<13>Apr 6 03:21:38 rpmi: libnghttp2-1.52.0-alt1 sisyphus+315262.100.1.1 1676446367 installed
<13>Apr 6 03:21:38 rpmi: openldap-common-2.6.4-alt1 sisyphus+317419.100.1.1 1679684487 installed
<13>Apr 6 03:21:38 rpmi: libntlm-1.5-alt1 sisyphus+278100.3300.1.1 1626058899 installed
<13>Apr 6 03:21:38 rpmi: libidn-1.37-alt2 sisyphus+300849.100.1.1 1653769687 installed
<13>Apr 6 03:21:38 rpmi: libverto-0.3.2-alt1_1 sisyphus+279289.100.1.3 1626493868 installed
<13>Apr 6 03:21:38 rpmi: liblmdb-0.9.29-alt1.1 sisyphus+306630.100.1.1 1663072360 installed
<13>Apr 6 03:21:38 rpmi: libkeyutils-1.6.3-alt1 sisyphus+266061.100.1.1 1612919566 installed
<13>Apr 6 03:21:38 rpmi: libcom_err-1.46.4.0.5.4cda-alt1 sisyphus+283826.100.1.1 1629975345 installed
<13>Apr 6 03:21:38 rpmi: bubblewrap-0.8.0-alt1 sisyphus+315970.100.1.1 1677573608 installed
<13>Apr 6 03:21:38 rpmi: libboost_context1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:38 rpmi: libboost_fiber1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:38 rpmi: libboost_stacktrace1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:38 rpmi: libboost_nowide1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:38 rpmi: libboost_test1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:38 rpmi: libboost_serialization1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:38 rpmi: libboost_random1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:38 rpmi: libboost_iostreams1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:38 rpmi: libboost_json1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:38 rpmi: libboost_regex1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:38 rpmi: libboost_graph1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:38 rpmi: libboost_date_time1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:38 rpmi: libboost_container1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:40 rpmi: boost-devel-headers-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:40 rpmi: boost-devel-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:40 rpmi: libX11-locales-3:1.8.4-alt1 sisyphus+314722.100.1.1 1675664300 installed
<13>Apr 6 03:21:40 rpmi: libXdmcp-1.1.4-alt1 sisyphus+311188.1000.1.1 1670233857 installed
<13>Apr 6 03:21:40 rpmi: libxcb-1.15-alt1 sisyphus+299436.300.1.1 1651655472 installed
<13>Apr 6 03:21:40 rpmi: libX11-3:1.8.4-alt1 sisyphus+314722.100.1.1 1675664300 installed
<13>Apr 6 03:21:40 rpmi: libXext-1.3.5-alt1 sisyphus+309285.100.1.1 1667212412 installed
<13>Apr 6 03:21:40 rpmi: libXrender-0.9.11-alt1 sisyphus+308841.100.1.1 1666436130 installed
<13>Apr 6 03:21:40 rpmi: libcairo-1:1.16.0-alt2 sisyphus+312186.100.1.1 1671693937 installed
<13>Apr 6 03:21:40 rpmi: libXfixes-6.0.0-alt1 sisyphus+284644.300.1.1 1630910331 installed
<13>Apr 6 03:21:40 rpmi: libcairo-gobject-1:1.16.0-alt2 sisyphus+312186.100.1.1 1671693937 installed
<13>Apr 6 03:21:40 rpmi: libXi-1.8-alt1 sisyphus+285490.200.1.1 1632124174 installed
<13>Apr 6 03:21:40 rpmi: libXdamage-1.1.6-alt1 sisyphus+311188.300.1.1 1670233711 installed
<13>Apr 6 03:21:40 rpmi: libXrandr-1.5.3-alt1 sisyphus+310375.100.1.1 1669010696 installed
<13>Apr 6 03:21:40 rpmi: libXxf86vm-1.1.5-alt1 sisyphus+308663.1400.1.1 1666168523 installed
<13>Apr 6 03:21:40 rpmi: libGLX-mesa-4:23.0.1-alt1 sisyphus+317620.100.1.1 1680001072 installed
<13>Apr 6 03:21:40 rpmi: libGLX-7:1.6.0-alt1 sisyphus+310974.100.1.1 1669906757 installed
<13>Apr 6 03:21:40 rpmi: libGL-7:1.6.0-alt1 sisyphus+310974.100.1.1 1669906757 installed
<13>Apr 6 03:21:40 rpmi: libva-2.17.0-alt1 sisyphus+313589.100.1.1 1674042573 installed
<13>Apr 6 03:21:40 rpmi: libXv-1.0.12-alt1 sisyphus+311188.600.1.1 1670233799 installed
<13>Apr 6 03:21:40 rpmi: libzvbi-0.2.35-alt2 sisyphus+275416.100.1.3 1624507095 installed
<13>Apr 6 03:21:40 rpmi: libXcomposite-0.4.6-alt1 sisyphus+311188.200.1.1 1670233682 installed
<13>Apr 6 03:21:41 rpmi: libxcb-devel-1.15-alt1 sisyphus+299436.300.1.1 1651655472 installed
<13>Apr 6 03:21:41 rpmi: libX11-devel-3:1.8.4-alt1 sisyphus+314722.100.1.1 1675664300 installed
<13>Apr 6 03:21:41 rpmi: libXrender-devel-0.9.11-alt1 sisyphus+308841.100.1.1 1666436130 installed
<13>Apr 6 03:21:41 rpmi: libXext-devel-1.3.5-alt1 sisyphus+309285.100.1.1 1667212412 installed
<13>Apr 6 03:21:41 rpmi: libEGL-mesa-4:23.0.1-alt1 sisyphus+317620.100.1.1 1680001072 installed
<13>Apr 6 03:21:41 rpmi: libEGL-7:1.6.0-alt1 sisyphus+310974.100.1.1 1669906757 installed
<13>Apr 6 03:21:42 rpmi: libgst-plugins1.0-1.22.1-alt1 sisyphus+316236.200.1.1 1677975042 installed
<13>Apr 6 03:21:42 rpmi: libgst-plugins1.0-gir-1.22.1-alt1 sisyphus+316236.200.1.1 1677975042 installed
<13>Apr 6 03:21:42 rpmi: libXcursor-1.2.1-alt1 sisyphus+297765.200.1.1 1649053926 installed
<13>Apr 6 03:21:42 rpmi: libharfbuzz-cairo-7.0.1-alt1 sisyphus+315589.100.1.1 1676975783 installed
<13>Apr 6 03:21:42 rpmi: libXft-2.3.7-alt1 sisyphus+310164.100.1.1 1668680608 installed
<13>Apr 6 03:21:42 rpmi: libpango-1.50.14-alt1 sisyphus+316117.100.1.1 1677780551 installed
<13>Apr 6 03:21:42 rpmi: librsvg-1:2.56.0-alt1 sisyphus+317076.500.1.1 1679344623 installed
<13>Apr 6 03:21:42 rpmi: libvdpau-1:1.5-alt1 sisyphus+298034.100.1.1 1649336822 installed
<13>Apr 6 03:21:42 rpmi: libavutil56-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910684 installed
<13>Apr 6 03:21:42 rpmi: libswscale5-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910684 installed
<13>Apr 6 03:21:42 rpmi: libswresample3-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910684 installed
<13>Apr 6 03:21:42 rpmi: libavcodec58-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910684 installed
<13>Apr 6 03:21:42 rpmi: libpostproc55-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910684 installed
<13>Apr 6 03:21:42 rpmi: libavresample4-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910684 installed
<13>Apr 6 03:21:42 rpmi: libXinerama-1.1.5-alt1 sisyphus+309287.100.1.1 1667213208 installed
<13>Apr 6 03:21:42 rpmi: liblz4-1:1.9.4-alt1 sisyphus+309416.100.1.1 1667412981 installed
<13>Apr 6 03:21:42 rpmi: libsystemd-1:252.7-alt1 sisyphus+316321.100.1.1 1678130436 installed
<13>Apr 6 03:21:42 rpmi: libdbus-1.14.6-alt1 sisyphus+315497.100.1.1 1676874443 installed
<13>Apr 6 03:21:42 rpmi: libpulseaudio-16.1-alt1 sisyphus+302689.200.2.1 1656326105 installed
<13>Apr 6 03:21:42 rpmi: libat-spi2-core-2.48.0-alt1 sisyphus+317076.400.1.1 1679344508 installed
<13>Apr 6 03:21:42 rpmi: at-spi2-atk-2.48.0-alt1 sisyphus+317076.400.1.1 1679344508 installed
<13>Apr 6 03:21:42 rpmi: libavahi-0.8-alt2 sisyphus+279391.100.1.2 1626530679 installed
<13>Apr 6 03:21:42 rpmi: libzbar-0.23.92-alt3 sisyphus+291245.25400.54.1 1643305635 installed
<13>Apr 6 03:21:42 rpmi: libpolkit-0.120-alt1.qa2 sisyphus+296007.100.1.1 1646053422 installed
<13>Apr 6 03:21:43 rpmi: libjavascriptcoregtk4-2.40.0-alt1 sisyphus+317126.100.1.1 1679402570 installed
<13>Apr 6 03:21:43 rpmi: rpm-macros-alternatives-0.5.2-alt2 sisyphus+315270.200.2.1 1676457367 installed
<13>Apr 6 03:21:43 rpmi: alternatives-0.5.2-alt2 sisyphus+315270.200.2.1 1676457367 installed
<13>Apr 6 03:21:43 rpmi: ca-certificates-2022.12.14-alt1 sisyphus+311754.200.1.1 1671046143 installed
<13>Apr 6 03:21:43 rpmi: ca-trust-0.1.4-alt1 sisyphus+308690.100.1.1 1666182992 installed
<13>Apr 6 03:21:43 rpmi: p11-kit-trust-0.24.1-alt1 sisyphus+293720.100.1.1 1642535264 installed
<13>Apr 6 03:21:43 rpmi: libcrypto1.1-1.1.1t-alt1 sisyphus+314824.100.2.2 1675799015 installed
<13>Apr 6 03:21:43 rpmi: libssl1.1-1.1.1t-alt1 sisyphus+314824.100.2.2 1675799015 installed
<13>Apr 6 03:21:43 rpmi: python3-3.10.8-alt1.1 sisyphus+311926.100.2.1 1671363630 installed
<13>Apr 6 03:21:44 rpmi: python3-base-3.10.8-alt1.1 sisyphus+311926.100.2.1 1671363630 installed
<86>Apr 6 03:21:44 groupadd[897376]: group added to /etc/group: name=_keytab, GID=499
<86>Apr 6 03:21:44 groupadd[897376]: group added to /etc/gshadow: name=_keytab
<86>Apr 6 03:21:44 groupadd[897376]: new group: name=_keytab, GID=499
<13>Apr 6 03:21:44 rpmi: libkrb5-1.20.1-alt1 sisyphus+306946.1000.5.2 1677793877 installed
<13>Apr 6 03:21:44 rpmi: libkmod-30-alt1 sisyphus+307195.200.2.1 1663842341 installed
<13>Apr 6 03:21:44 rpmi: systemd-utils-standalone-1:252.7-alt1 sisyphus+316321.100.1.1 1678130436 installed
<13>Apr 6 03:21:44 rpmi: dbus-tools-1.14.6-alt1 sisyphus+315497.100.1.1 1676874443 installed
<86>Apr 6 03:21:44 groupadd[897578]: group added to /etc/group: name=messagebus, GID=498
<86>Apr 6 03:21:44 groupadd[897578]: group added to /etc/gshadow: name=messagebus
<86>Apr 6 03:21:44 groupadd[897578]: new group: name=messagebus, GID=498
<86>Apr 6 03:21:44 useradd[897585]: new user: name=messagebus, UID=499, GID=498, home=/run/dbus, shell=/dev/null
<13>Apr 6 03:21:44 rpmi: dbus-1.14.6-alt1 sisyphus+315497.100.1.1 1676874443 installed
<13>Apr 6 03:21:44 rpmi: dconf-0.40.0-alt1 sisyphus+279299.100.1.2 1626495967 installed
<13>Apr 6 03:21:44 rpmi: libgtk+3-schemas-3.24.37-alt1 sisyphus+316153.100.1.1 1677835525 installed
<13>Apr 6 03:21:44 rpmi: kmod-30-alt1 sisyphus+307195.200.2.1 1663842341 installed
<13>Apr 6 03:21:44 rpmi: dmsetup-1.02.193-alt1 sisyphus+317421.100.1.1 1679684411 installed
<86>Apr 6 03:21:44 groupadd[897667]: group added to /etc/group: name=tape, GID=497
<86>Apr 6 03:21:44 groupadd[897667]: group added to /etc/gshadow: name=tape
<86>Apr 6 03:21:44 groupadd[897667]: new group: name=tape, GID=497
<86>Apr 6 03:21:44 groupadd[897677]: group added to /etc/group: name=dialout, GID=496
<86>Apr 6 03:21:44 groupadd[897677]: group added to /etc/gshadow: name=dialout
<86>Apr 6 03:21:44 groupadd[897677]: new group: name=dialout, GID=496
<86>Apr 6 03:21:44 groupadd[897684]: group added to /etc/group: name=input, GID=495
<86>Apr 6 03:21:44 groupadd[897684]: group added to /etc/gshadow: name=input
<86>Apr 6 03:21:44 groupadd[897684]: new group: name=input, GID=495
<86>Apr 6 03:21:44 groupadd[897691]: group added to /etc/group: name=video, GID=494
<86>Apr 6 03:21:44 groupadd[897691]: group added to /etc/gshadow: name=video
<86>Apr 6 03:21:44 groupadd[897691]: new group: name=video, GID=494
<86>Apr 6 03:21:44 groupadd[897702]: group added to /etc/group: name=render, GID=493
<86>Apr 6 03:21:44 groupadd[897702]: group added to /etc/gshadow: name=render
<86>Apr 6 03:21:44 groupadd[897702]: new group: name=render, GID=493
<86>Apr 6 03:21:44 groupadd[897709]: group added to /etc/group: name=sgx, GID=492
<86>Apr 6 03:21:44 groupadd[897709]: group added to /etc/gshadow: name=sgx
<86>Apr 6 03:21:44 groupadd[897709]: new group: name=sgx, GID=492
<13>Apr 6 03:21:44 rpmi: udev-1:252.7-alt1 sisyphus+316321.100.1.1 1678130436 installed
<86>Apr 6 03:21:45 groupadd[898156]: group added to /etc/group: name=colord, GID=491
<86>Apr 6 03:21:45 groupadd[898156]: group added to /etc/gshadow: name=colord
<86>Apr 6 03:21:45 groupadd[898156]: new group: name=colord, GID=491
<86>Apr 6 03:21:45 useradd[898164]: new user: name=colord, UID=498, GID=491, home=/var/colord, shell=/dev/null
<13>Apr 6 03:21:45 rpmi: colord-1.4.6-alt1 sisyphus+296000.100.1.1 1646050421 installed
<13>Apr 6 03:21:45 rpmi: libgsasl-1.8.0-alt3 sisyphus+275307.100.1.2 1624478543 installed
<86>Apr 6 03:21:45 groupadd[898288]: group added to /etc/group: name=sasl, GID=490
<86>Apr 6 03:21:45 groupadd[898288]: group added to /etc/gshadow: name=sasl
<86>Apr 6 03:21:45 groupadd[898288]: new group: name=sasl, GID=490
<13>Apr 6 03:21:45 rpmi: libsasl2-3-2.1.27-alt2.2 sisyphus+306372.1000.8.1 1663097224 installed
<13>Apr 6 03:21:45 rpmi: libldap2-2.6.4-alt1 sisyphus+317419.100.1.1 1679684487 installed
<13>Apr 6 03:21:45 rpmi: libssh-0.9.6-alt1 sisyphus+284392.100.1.1 1630573056 installed
<13>Apr 6 03:21:45 rpmi: libneon-0.32.2-alt1 sisyphus+302406.100.1.1 1655812498 installed
<13>Apr 6 03:21:45 rpmi: glib2-devel-2.76.1-alt1 sisyphus+317249.100.1.1 1679515552 installed
<13>Apr 6 03:21:45 rpmi: libcairo-devel-1:1.16.0-alt2 sisyphus+312186.100.1.1 1671693937 installed
<13>Apr 6 03:21:45 rpmi: fontconfig-devel-2.14.2-alt5 sisyphus+317300.100.1.1 1679578083 installed
<13>Apr 6 03:21:45 rpmi: libfreetype-devel-2.13.0-alt1 sisyphus+315092.100.1.1 1676198644 installed
<13>Apr 6 03:21:45 rpmi: libharfbuzz-devel-7.0.1-alt1 sisyphus+315589.100.1.1 1676975783 installed
<13>Apr 6 03:21:45 rpmi: libpython3-3.10.8-alt1.1 sisyphus+311926.100.2.1 1671363630 installed
<13>Apr 6 03:21:45 rpmi: python3-module-pkg_resources-1:67.4.0-alt1 sisyphus+316154.100.2.1 1678108064 installed
<13>Apr 6 03:21:45 rpmi: tests-for-installed-python3-pkgs-0.1.21-alt1 sisyphus+313305.100.2.1 1674203926 installed
<13>Apr 6 03:21:45 rpmi: rpm-build-python3-0.1.21-alt1 sisyphus+313305.100.2.1 1674203926 installed
<13>Apr 6 03:21:46 rpmi: python3-dev-3.10.8-alt1.1 sisyphus+311926.100.2.1 1671363630 installed
<13>Apr 6 03:21:46 rpmi: librabbitmq-c4-0.13.0-alt1 sisyphus+314793.100.2.1 1678110227 installed
<13>Apr 6 03:21:46 rpmi: libavformat58-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910684 installed
<13>Apr 6 03:21:46 rpmi: libavfilter7-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910684 installed
<13>Apr 6 03:21:46 rpmi: gst-libav-1.22.1-alt1 sisyphus+316236.700.1.1 1677975391 installed
<13>Apr 6 03:21:46 rpmi: libcups-2.4.2-alt1 sisyphus+304732.100.2.1 1659624891 installed
<13>Apr 6 03:21:47 rpmi: libgtk+3-3.24.37-alt1 sisyphus+316153.100.1.1 1677835525 installed
<13>Apr 6 03:21:47 rpmi: libwxGTK3.0-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669833 installed
<13>Apr 6 03:21:47 rpmi: libwxGTK3.0-gl-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669833 installed
<13>Apr 6 03:21:47 rpmi: libwxGTK3.0-media-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669833 installed
<13>Apr 6 03:21:47 rpmi: libshout2-2.4.6-alt2 sisyphus+303674.1400.6.1 1657969762 installed
<13>Apr 6 03:21:47 rpmi: gst-plugins-good1.0-1.22.1-alt1 sisyphus+316236.300.1.1 1677975149 installed
<13>Apr 6 03:21:47 rpmi: libarchive13-3.6.1-alt2 sisyphus+311213.100.1.1 1670244620 installed
<13>Apr 6 03:21:47 rpmi: libssh2-1.10.0-alt1 sisyphus+289470.100.1.1 1636752293 installed
<13>Apr 6 03:21:47 rpmi: libcurl-8.0.1-alt2 sisyphus+317180.500.4.1 1679494002 installed
<13>Apr 6 03:21:47 rpmi: libraptor2-2.0.15-alt1 sisyphus+275177.100.1.2 1624430693 installed
<13>Apr 6 03:21:47 rpmi: liblrdf-0.6.1-alt1 sisyphus+278205.100.1.1 1626077040 installed
<13>Apr 6 03:21:47 rpmi: gdcm-3.0.12-alt2 sisyphus+300466.100.1.1 1653304775 installed
<13>Apr 6 03:21:48 rpmi: libopencv4.5-1:4.5.5-alt2 sisyphus+312524.1440.15.2 1676177605 installed
<13>Apr 6 03:21:48 rpmi: glib-networking-2.76.0-alt1 sisyphus+317076.1100.1.1 1679345019 installed
<13>Apr 6 03:21:48 rpmi: libsoup-2.74.3-alt1 sisyphus+308247.100.1.1 1665521883 installed
<13>Apr 6 03:21:48 rpmi: libgssdp1.2-1.4.0.1-alt1 sisyphus+285462.100.1.1 1632035581 installed
<13>Apr 6 03:21:48 rpmi: libgupnp1.2-1.4.3-alt1 sisyphus+293449.100.1.1 1642101423 installed
<13>Apr 6 03:21:48 rpmi: libgupnp-igd-1.2.0-alt1.2 sisyphus+285462.600.1.1 1632035925 installed
<13>Apr 6 03:21:48 rpmi: libnice-0.1.21-alt1 sisyphus+313049.100.1.1 1673271407 installed
<13>Apr 6 03:21:48 rpmi: alsa-ucm-conf-1.2.8-alt5 sisyphus+316098.200.2.1 1677756308 installed
<13>Apr 6 03:21:48 rpmi: alsa-topology-conf-1.2.5.1-alt1 sisyphus+274777.100.1.1 1624089141 installed
<13>Apr 6 03:21:49 rpmi: libalsa-1:1.2.8-alt1 sisyphus+310349.200.1.1 1668964316 installed
<13>Apr 6 03:21:49 rpmi: libfluidsynth-2.3.2-alt1 sisyphus+317923.100.1.1 1680465823 installed
<13>Apr 6 03:21:49 rpmi: libSDL-1.2.14-alt10 sisyphus+284852.100.1.1 1631107838 installed
<13>Apr 6 03:21:49 rpmi: libmjpegtools2.1-2.2.1-alt1 sisyphus+286352.100.1.1 1633334535 installed
<13>Apr 6 03:21:49 rpmi: gst-plugins-bad1.0-1.22.1-alt1 sisyphus+316236.400.1.1 1677975274 installed
<13>Apr 6 03:21:49 rpmi: gst-plugins-base1.0-1.22.1-alt1 sisyphus+316236.200.1.1 1677975042 installed
<13>Apr 6 03:21:50 rpmi: libwebkit2gtk-2.40.0-alt1 sisyphus+317126.100.1.1 1679402570 installed
<13>Apr 6 03:21:50 rpmi: libwxGTK3.0-webview-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669833 installed
<13>Apr 6 03:21:50 rpmi: libwxGTK3.0-devel-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669833 installed
<13>Apr 6 03:21:51 rpmi: cmake-3.23.2-alt2 sisyphus+317703.100.1.1 1680090547 installed
<13>Apr 6 03:21:51 rpmi: python3-module-setuptools-1:67.4.0-alt1 sisyphus+316154.100.2.1 1678108064 installed
<13>Apr 6 03:21:51 rpmi: boost-filesystem-devel-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed
<13>Apr 6 03:21:51 rpmi: gcc-c++-12-alt1 sisyphus+300988.300.1.1 1654033053 installed
<13>Apr 6 03:21:51 rpmi: swig-1:4.0.2-alt4 sisyphus+302321.100.1.1 1655603940 installed
<13>Apr 6 03:21:51 rpmi: rapidjson-devel-1.1.0-alt4 sisyphus+317980.100.1.1 1680571518 installed
<13>Apr 6 03:21:51 rpmi: libxml2-devel-1:2.10.3-alt1 sisyphus+308392.100.3.1 1666013203 installed
<13>Apr 6 03:21:51 rpmi: eigen3-3.4.0-alt2.1 sisyphus+293366.100.1.1 1641993630 installed
Building target platforms: x86_64
Building for target x86_64
Wrote: /usr/src/in/nosrpm/openbabel-3.1.1-alt2.nosrc.rpm (w1.gzdio)
Installing openbabel-3.1.1-alt2.src.rpm
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.81064
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ rm -rf openbabel-3.1.1
+ echo 'Source #0 (openbabel-3.1.1.tar):'
Source #0 (openbabel-3.1.1.tar):
+ /bin/tar -xf /usr/src/RPM/SOURCES/openbabel-3.1.1.tar
+ cd openbabel-3.1.1
+ /bin/chmod -c -Rf u+rwX,go-w .
+ echo 'Patch #0 (openbabel-3.1.1-alt2.patch):'
Patch #0 (openbabel-3.1.1-alt2.patch):
+ /usr/bin/patch -p1
patching file .gear/rules
patching file .gear/tags/2806ab0ef7445a427f7cc4706455d7988262adcc
patching file .gear/tags/list
patching file .github/config.yml
patching file .github/workflows/build_cmake.yml
patching file .github/workflows/misspell-fixer.yml
patching file CMakeLists.txt
patching file OpenBabel3Config.cmake.in
patching file OpenBabel3ConfigVersion.cmake.in
patching file cmake/modules/Findcoordgen.cmake
patching file data/CMakeLists.txt
patching file data/atomtyp.h
patching file data/bondtyp.h
patching file data/genheaders.sh
patching file data/logp.txt
patching file data/phmodeldata.h
patching file data/resdata.h
patching file data/splash.png
patching file data/torlib.h
patching file data/types.h
patching file doc/examples/obconformersearch_default.cpp
patching file doc/images/SPshapes.png
patching file doc/images/cistrans.png
patching file doc/images/energyconformerscore.png
patching file doc/images/getcisref.png
patching file doc/images/gettransref.png
patching file doc/images/rmsdconformerscore.png
patching file doc/images/spectrophore_cage.png
patching file doc/images/squareplanar.png
patching file doc/images/tetrahedral.png
patching file doc/images/tetranonplanar.png
patching file doc/images/tetraplanar.png
patching file doc/splash.png
patching file include/openbabel/conformersearch.h
patching file include/openbabel/forcefield.h
patching file include/openbabel/generic.h
patching file include/openbabel/mol.h
patching file include/openbabel/residue.h
patching file include/openbabel/rotor.h
patching file include/openbabel/spectrophore.h
patching file include/openbabel/stereo/stereo.h
patching file include/openbabel/stereo/tetraplanar.h
patching file include/openbabel/typer.h
patching file openbabel.spec
patching file openbabel.watch
patching file scripts/CMakeLists.txt
patching file scripts/openbabel-R.i
patching file scripts/openbabel-csharp.i
patching file scripts/openbabel-java.i
patching file scripts/openbabel-mono.i
patching file scripts/openbabel-perl.i
patching file scripts/openbabel-php.i
patching file scripts/openbabel-python.i
patching file scripts/openbabel-ruby.i
patching file scripts/python/openbabel/pybel.py
patching file scripts/python/setup.py
patching file src/CMakeLists.txt
patching file src/conformersearch.cpp
patching file src/data.cpp
patching file src/doxygen_pages.cpp
patching file src/fingerprints/finger3.cpp
patching file src/forcefields/forcefielduff.cpp
patching file src/formats/MCDLformat.cpp
patching file src/formats/cifformat.cpp
patching file src/formats/copyformat.cpp
patching file src/formats/fastsearchformat.cpp
patching file src/formats/fingerprintformat.cpp
patching file src/formats/gaussformat.cpp
patching file src/formats/getinchi.cpp
patching file src/formats/pngformat.cpp
patching file src/formats/smilesformat.cpp
patching file src/formats/svgformat.cpp
patching file src/formats/textformat.cpp
patching file src/formats/xtcformat.cpp
patching file src/formats/yasaraformat.cpp
patching file src/kekulize.cpp
patching file src/math/spacegroup.cpp
patching file src/mcdlutil.cpp
patching file src/mol.cpp
patching file src/obiter.cpp
patching file src/obmolecformat.cpp
patching file src/ops/conformer.cpp
patching file src/parsmart.cpp
patching file src/residue.cpp
patching file src/spectrophore.cpp
patching file src/tautomer.cpp
patching file src/typer.cpp
patching file test/CMakeLists.txt
patching file test/cifspacegrouptest.cpp
patching file test/files/alias.png
patching file test/files/aromatics.png
patching file test/fuzz/fuzz_obconversion.cpp
patching file test/iterators.cpp
patching file test/residue.cpp
patching file test/smartstest.cpp
patching file test/testbindings.py
patching file test/testdistgeom.py
patching file tools/obrms.cpp
patching file tools/obthermo.cpp
+ sed -i 's/dist\(-packages\)/site\1/' scripts/CMakeLists.txt
+ exit 0
Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.8047
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd openbabel-3.1.1
+ mkdir -p x86_64-alt-linux
+ cmake -DCMAKE_SKIP_INSTALL_RPATH:BOOL=yes '-DCMAKE_C_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto' '-DCMAKE_CXX_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto' '-DCMAKE_Fortran_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto' -DCMAKE_INSTALL_PREFIX=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_DESTINATION=lib64 -DLIB_SUFFIX=64 -S . -B x86_64-alt-linux -DWITH_MAEPARSER:BOOL=OFF -DWITH_COORDGEN:BOOL=OFF -DBUILD_GUI:BOOL=ON -DRUN_SWIG=ON -DPYTHON_BINDINGS:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3
-- The C compiler identification is GNU 12.2.1
-- The CXX compiler identification is GNU 12.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy):
The OLD behavior for policy CMP0042 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
-- Using included inchi library.
-- Found LibXml2: /usr/lib64/libxml2.so (found version "2.10.3")
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.13")
-- Found wxWidgets: -pthread;;;-lwx_baseu-3.0;-lwx_gtk3u_core-3.0;-lwx_gtk3u_adv-3.0 (found version "3.0.5")
-- Looking for conio.h
-- Looking for conio.h - not found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for time.h
-- Looking for time.h - found
-- Looking for strings.h
-- Looking for strings.h - found
-- Looking for rpc/xdr.h
-- Looking for rpc/xdr.h - not found
-- Looking for regex.h
-- Looking for regex.h - found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for rint
-- Looking for rint - not found
-- Looking for snprintf
-- Looking for snprintf - found
-- Looking for sranddev
-- Looking for sranddev - not found
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strncasecmp
-- Looking for strncasecmp - found
-- Looking for dlopen in dl
-- Looking for dlopen in dl - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of clock_t
-- Check size of clock_t - done
-- Performing Test SCANDIR_NEEDS_CONST
-- Performing Test SCANDIR_NEEDS_CONST - Failed
-- Performing Test HAVE_GCC_VISIBILITY
-- Performing Test HAVE_GCC_VISIBILITY - Success
-- Checking available shared pointer...
-- Performing Test HAVE_STD_SHARED_PTR
-- Performing Test HAVE_STD_SHARED_PTR - Success
-- Performing Test HAVE_STD_TR1_SHARED_PTR
-- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed
-- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER
-- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success
-- Use std::shared_ptr in memory
-- Could NOT find Boost: missing: program_options (found /usr/lib64/cmake/Boost-1.80.0/BoostConfig.cmake (found version "1.80.0"))
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0")
-- Found Boost: /usr/lib64/cmake/Boost-1.80.0/BoostConfig.cmake (found version "1.80.0") found components: filesystem iostreams unit_test_framework
-- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats.
-- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats.
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2")
-- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0")
-- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include
-- Checking for module 'cairo'
-- Found cairo, version 1.16.0
Package libpcre2-8 was not found in the pkg-config search path.
Perhaps you should add the directory containing `libpcre2-8.pc'
to the PKG_CONFIG_PATH environment variable
Package 'libpcre2-8', required by 'glib-2.0', not found
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Package libpcre2-8 was not found in the pkg-config search path.
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CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required):
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CMake that the project does not need compatibility with older versions.
-- Found SWIG: /usr/bin/swig (found version "4.0.2")
-- Found SWIG: /usr/bin/swig (found suitable version "4.0.2", minimum required is "2.0")
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.c.o -MF CMakeFiles/inchi.dir/ichirvr7.c.o.d -o CMakeFiles/inchi.dir/ichirvr7.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichirvr7.c
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/CMakeFiles/openbabel.dir/DependInfo.cmake --color=
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/alias.cpp.o -MF CMakeFiles/openbabel.dir/alias.cpp.o.d -o CMakeFiles/openbabel.dir/alias.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/alias.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/alias.cpp:19:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
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from /usr/include/c++/12/sstream:38,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/alias.cpp:16:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/atom.cpp.o -MF CMakeFiles/openbabel.dir/atom.cpp.o.d -o CMakeFiles/openbabel.dir/atom.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/atom.cpp
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/base.cpp.o -MF CMakeFiles/openbabel.dir/base.cpp.o.d -o CMakeFiles/openbabel.dir/base.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/base.cpp
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -MF CMakeFiles/openbabel.dir/bondtyper.cpp.o.d -o CMakeFiles/openbabel.dir/bondtyper.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/bondtyper.cpp
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/chargemodel.cpp.o -MF CMakeFiles/openbabel.dir/chargemodel.cpp.o.d -o CMakeFiles/openbabel.dir/chargemodel.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/chargemodel.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/chargemodel.cpp:21:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/chains.cpp.o -MF CMakeFiles/openbabel.dir/chains.cpp.o.d -o CMakeFiles/openbabel.dir/chains.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/chains.cpp
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/elements.cpp.o -MF CMakeFiles/openbabel.dir/elements.cpp.o.d -o CMakeFiles/openbabel.dir/elements.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/elements.cpp
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/usr/bin/cc -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -O2 -DNDEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,libinchi.so.0 -o ../../../lib64/libinchi.so.0.4.1 CMakeFiles/inchi.dir/ichi_bns.c.o CMakeFiles/inchi.dir/ichi_io.c.o CMakeFiles/inchi.dir/ichican2.c.o CMakeFiles/inchi.dir/ichicano.c.o CMakeFiles/inchi.dir/ichicans.c.o CMakeFiles/inchi.dir/ichiisot.c.o CMakeFiles/inchi.dir/ichilnct.c.o CMakeFiles/inchi.dir/ichimak2.c.o CMakeFiles/inchi.dir/ichimake.c.o CMakeFiles/inchi.dir/ichimap1.c.o CMakeFiles/inchi.dir/ichimap2.c.o CMakeFiles/inchi.dir/ichimap4.c.o CMakeFiles/inchi.dir/ichinorm.c.o CMakeFiles/inchi.dir/ichiparm.c.o CMakeFiles/inchi.dir/ichiprt1.c.o CMakeFiles/inchi.dir/ichiprt2.c.o CMakeFiles/inchi.dir/ichiprt3.c.o CMakeFiles/inchi.dir/ichiqueu.c.o CMakeFiles/inchi.dir/ichiread.c.o CMakeFiles/inchi.dir/ichiring.c.o CMakeFiles/inchi.dir/ichirvr1.c.o CMakeFiles/inchi.dir/ichirvr2.c.o CMakeFiles/inchi.dir/ichirvr3.c.o CMakeFiles/inchi.dir/ichirvr4.c.o CMakeFiles/inchi.dir/ichirvr5.c.o CMakeFiles/inchi.dir/ichirvr6.c.o CMakeFiles/inchi.dir/ichirvr7.c.o CMakeFiles/inchi.dir/ichisort.c.o CMakeFiles/inchi.dir/ichister.c.o CMakeFiles/inchi.dir/ichitaut.c.o CMakeFiles/inchi.dir/ikey_base26.c.o CMakeFiles/inchi.dir/ikey_dll.c.o CMakeFiles/inchi.dir/inchi_dll.c.o CMakeFiles/inchi.dir/inchi_dll_a.c.o CMakeFiles/inchi.dir/inchi_dll_a2.c.o CMakeFiles/inchi.dir/inchi_dll_main.c.o CMakeFiles/inchi.dir/runichi.c.o CMakeFiles/inchi.dir/sha2.c.o CMakeFiles/inchi.dir/strutil.c.o CMakeFiles/inchi.dir/util.c.o -lm -ldl -lz -lcairo -lc -lm
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/libinchi && /usr/bin/cmake -E cmake_symlink_library ../../../lib64/libinchi.so.0.4.1 ../../../lib64/libinchi.so.0 ../../../lib64/libinchi.so
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[ 10%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/data_utilities.cpp.o -MF CMakeFiles/openbabel.dir/data_utilities.cpp.o.d -o CMakeFiles/openbabel.dir/data_utilities.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/data_utilities.cpp
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[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/format.cpp.o -MF CMakeFiles/openbabel.dir/format.cpp.o.d -o CMakeFiles/openbabel.dir/format.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/format.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/format.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
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[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/descriptor.cpp.o -MF CMakeFiles/openbabel.dir/descriptor.cpp.o.d -o CMakeFiles/openbabel.dir/descriptor.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptor.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptor.cpp:23:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/istream:38,
from /usr/include/c++/12/sstream:38,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptor.cpp:20:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
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[ 10%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/canon.cpp.o -MF CMakeFiles/openbabel.dir/canon.cpp.o.d -o CMakeFiles/openbabel.dir/canon.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/canon.cpp
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[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -MF CMakeFiles/openbabel.dir/fingerprint.cpp.o.d -o CMakeFiles/openbabel.dir/fingerprint.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprint.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprint.cpp:27:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprint.cpp:21:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
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[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF CMakeFiles/openbabel.dir/builder.cpp.o.d -o CMakeFiles/openbabel.dir/builder.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/builder.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/builder.cpp:31:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/builder.h:23,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/builder.cpp:22:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
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[ 12%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/grid.cpp.o -MF CMakeFiles/openbabel.dir/grid.cpp.o.d -o CMakeFiles/openbabel.dir/grid.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/grid.cpp
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[ 10%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/data.cpp.o -MF CMakeFiles/openbabel.dir/data.cpp.o.d -o CMakeFiles/openbabel.dir/data.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/data.cpp
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/locale.cpp.o -MF CMakeFiles/openbabel.dir/locale.cpp.o.d -o CMakeFiles/openbabel.dir/locale.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/locale.cpp
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/griddata.cpp.o -MF CMakeFiles/openbabel.dir/griddata.cpp.o.d -o CMakeFiles/openbabel.dir/griddata.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/griddata.cpp
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/usr/src/RPM/BUILD/openbabel-3.1.1/src/kekulize.cpp: In function 'bool OpenBabel::NeedsDoubleBond(OBAtom*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/kekulize.cpp:94:15: warning: unused variable 'nbr' [-Wunused-variable]
94 | OBAtom *nbr = bond->GetNbrAtom(atom);
| ^~~
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/graphsym.cpp.o -MF CMakeFiles/openbabel.dir/graphsym.cpp.o.d -o CMakeFiles/openbabel.dir/graphsym.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/graphsym.cpp
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[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/forcefield.cpp.o -MF CMakeFiles/openbabel.dir/forcefield.cpp.o.d -o CMakeFiles/openbabel.dir/forcefield.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:24:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_tree.h:65,
from /usr/include/c++/12/set:60,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:22:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:391:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
391 | if (_ignoreAtom == a)
| ~~~~~~~~~~~~^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:393:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
393 | if (_ignoreAtom == b)
| ~~~~~~~~~~~~^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:403:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
403 | if (_ignoreAtom == b)
| ~~~~~~~~~~~~^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int, int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:413:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
413 | if (_ignoreAtom == d)
| ~~~~~~~~~~~~^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintType(int) const':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:665:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFConstraint>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
665 | if (index >= _constraints.size())
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'double OpenBabel::OBFFConstraints::GetConstraintValue(int) const':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:673:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFConstraint>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
673 | if (index >= _constraints.size())
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:681:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFConstraint>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
681 | if (index >= _constraints.size())
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:689:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFConstraint>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
689 | if (index >= _constraints.size())
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:697:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFConstraint>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
697 | if (index >= _constraints.size())
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:705:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFConstraint>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
705 | if (index >= _constraints.size())
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBForceField::FastRotorSearch(bool)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1353:34: warning: array subscript has type 'char' [-Wchar-subscripts]
1353 | num_permutations = factorial[num_rotors_to_permute];
| ^~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1357:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBRotor*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
1357 | for (int i=0; i<vrotors.size(); ++i)
| ~^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1370:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<unsigned int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
1370 | for (int i=0; i<reordered_rotors.size(); ++i) {
| ~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1291:9: warning: unused variable 'origLogLevel' [-Wunused-variable]
1291 | int origLogLevel = _loglvl;
| ^~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1327:12: warning: variable 'energy_offset' set but not used [-Wunused-but-set-variable]
1327 | double energy_offset;
| ^~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In function 'void OpenBabel::Reweight(std::vector<std::vector<double> >&, std::vector<int>, double)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1571:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
1571 | if (j == rotorKey[i])
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1590:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
1590 | if (j == rotorKey[i])
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[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/op.cpp.o -MF CMakeFiles/openbabel.dir/op.cpp.o.d -o CMakeFiles/openbabel.dir/op.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/op.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/op.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
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gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o CMakeFiles/openbabel.dir/obconversion.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp:48:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/istream:38,
from /usr/include/c++/12/fstream:38,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp:37:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/zipstream.h:333,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp:53:
/usr/src/RPM/BUILD/openbabel-3.1.1/src/zipstreamimpl.h: In instantiation of 'std::streamsize zlib_stream::basic_zip_streambuf<charT, traits>::flush() [with charT = char; traits = std::char_traits<char>; std::streamsize = long int]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/zipstreamimpl.h:86:5: required from 'zlib_stream::basic_zip_streambuf<charT, traits>::~basic_zip_streambuf() [with charT = char; traits = std::char_traits<char>]'
/usr/src/RPM/BUILD/openbabel-3.1.1/src/zipstreamimpl.h:631:24: required from 'zlib_stream::basic_zip_ostream<charT, traits>::basic_zip_ostream(ostream_reference, bool, int, zlib_stream::EStrategy, int, int, size_t) [with charT = char; traits = std::char_traits<char>; ostream_reference = std::basic_ostream<char>&; size_t = long unsigned int]'
/usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp:398:85: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/zipstreamimpl.h:179:8: warning: the compiler can assume that the address of 'zlib_stream::basic_zip_streambuf<char, std::char_traits<char> >::_ostream' will never be NULL [-Waddress]
179 | if(&_ostream)
| ^~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/zipstream.h:132:25: note: 'zlib_stream::basic_zip_streambuf<char, std::char_traits<char> >::_ostream' declared here
132 | ostream_reference _ostream;
| ^~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/obutil.cpp.o -MF CMakeFiles/openbabel.dir/obutil.cpp.o.d -o CMakeFiles/openbabel.dir/obutil.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obutil.cpp
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
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[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/patty.cpp.o -MF CMakeFiles/openbabel.dir/patty.cpp.o.d -o CMakeFiles/openbabel.dir/patty.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/patty.cpp
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/obiter.cpp.o -MF CMakeFiles/openbabel.dir/obiter.cpp.o.d -o CMakeFiles/openbabel.dir/obiter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp:27:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder]
375 | OBMol *_parent;
| ^~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder]
374 | OBRing *_ptr;
| ^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp:1022:3: warning: when initialized here [-Wreorder]
1022 | OBMolRingIter::OBMolRingIter(OBMol *mol): _parent(mol), _ptr(nullptr)
| ^~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder]
375 | OBMol *_parent;
| ^~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder]
374 | OBRing *_ptr;
| ^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp:1032:3: warning: when initialized here [-Wreorder]
1032 | OBMolRingIter::OBMolRingIter(OBMol &mol): _parent(&mol), _ptr(nullptr)
| ^~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/rand.cpp.o -MF CMakeFiles/openbabel.dir/rand.cpp.o.d -o CMakeFiles/openbabel.dir/rand.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/rand.cpp
/usr/src/RPM/BUILD/openbabel-3.1.1/src/rand.cpp:428:15: warning: 'void OpenBabel::GenerateSequence(unsigned int, unsigned int, unsigned int, unsigned int)' defined but not used [-Wunused-function]
428 | static void GenerateSequence( unsigned int p, unsigned int m,
| ^~~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/plugin.cpp.o -MF CMakeFiles/openbabel.dir/plugin.cpp.o.d -o CMakeFiles/openbabel.dir/plugin.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/plugin.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/plugin.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/parsmart.cpp.o -MF CMakeFiles/openbabel.dir/parsmart.cpp.o.d -o CMakeFiles/openbabel.dir/parsmart.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp
/usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp: In function 'int OpenBabel::CreateAtom(Pattern*, AtomExpr*, int, int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp:446:15: warning: variable 'size' set but not used [-Wunused-but-set-variable]
446 | int index,size;
| ^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp: In function 'int OpenBabel::CreateBond(Pattern*, BondExpr*, int, int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp:478:15: warning: variable 'size' set but not used [-Wunused-but-set-variable]
478 | int index,size;
| ^~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/phmodel.cpp.o -MF CMakeFiles/openbabel.dir/phmodel.cpp.o.d -o CMakeFiles/openbabel.dir/phmodel.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/phmodel.cpp
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[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -MF CMakeFiles/openbabel.dir/pointgroup.cpp.o.d -o CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::establish_pairs(SYMMETRY_ELEMENT*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:267:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
267 | if( elem->transform[i] >= _mol->NumAtoms() ){ /* No symmetric atom yet */
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::check_transform_order(SYMMETRY_ELEMENT*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:311:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
311 | if( elem->transform[i] == i ) /* Identity transform is Ok for any order */
| ~~~~~~~~~~~~~~~~~~~^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:315:34: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
315 | if( elem->transform[j] == i )
| ~~~~~~~~~~~~~~~~~~~^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::same_transform(SYMMETRY_ELEMENT*, SYMMETRY_ELEMENT*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:358:31: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
358 | if( b->transform[j] != i )
| ~~~~~~~~~~~~~~~~^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'OpenBabel::OBPointGroup::Symbol OpenBabel::OBPointGroup::IdentifyPointGroupSymbol(double)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:1958:37: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
1958 | || d->NormalAxesCounts[2] >= maxAxis) { // Are there the perpendicular C2 axes?
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:1961:28: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
1961 | if (d->PlanesCount >= maxAxis + 1) { // Likely Dnh
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:1986:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
1986 | else if (d->PlanesCount == maxAxis) { // Likely Dnd
| ~~~~~~~~~~~~~~~^~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2088:29: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
2088 | else if (d->PlanesCount >= maxAxis) { // Cnv
| ~~~~~~~~~~~~~~~^~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'void OpenBabel::OBPointGroup::Symmetrize(OpenBabel::OBMol*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2175:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
2175 | for (unsigned int i = 0; i < d->PlanesCount; i++)
| ~~^~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2182:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
2182 | for (unsigned int i = 0; i < d->NormalAxesCount; i++)
| ~~^~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2189:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
2189 | for (unsigned int i = 0; i < d->ImproperAxesCount; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
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gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:423:5: warning: multi-line comment [-Wcomment]
423 | // / \
| ^
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:27:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:22:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TSimpleMolecule::threeBondResolve(int, int, double&, double&, OpenBabel::neighbourlist*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:968:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
968 | for (i=0; i<bk[an].nb; i++) {
| ~^~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:970:13: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
970 | if (n != bondExcluded) {
| ~~^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:982:26: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
982 | for (k=0; k<rs; k++) if (bondList[k] == (*blStore)[j]) {
| ~^~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:995:22: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
995 | for (j=0; j<rs; j++) {
| ~^~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:1017:20: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
1017 | for (i=0; i<nAtoms(); i++) {
| ~^~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::deleteAtom(int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:1396:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
1396 | for (i=0; i<nAtoms(); i++) if (i != index) {
| ~^~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:1396:38: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
1396 | for (i=0; i<nAtoms(); i++) if (i != index) {
| ~~^~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TSimpleMolecule::makeFragment(std::vector<int>&, int, int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:1471:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
1471 | for (j=0; j<list.size(); j++) if (list[j] == l) test1=true;
| ~^~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:1478:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
1478 | } while (k<list.size());
| ~^~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::defC(int&, int, int, std::vector<int>&, std::vector<int>&, std::vector<std::vector<int> >&, std::vector<int>&, std::vector<int>&, std::vector<int>&, std::vector<int>&, std::vector<int>&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2009:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
2009 | for (j=0; j<atomCycle[i].size(); j++) if (atomDefine[atomCycle[i][j]]>0) atDef=atDef+1;
| ~^~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2019:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
2019 | if (cN>=0) if (maxAtDef==atomCycle[cN].size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2034:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
2034 | for (j=1; j<atomCycle[cN].size(); j++) atomCycle[cN][j-1]=atomCycle[cN][j];
| ~^~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2040:45: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
2040 | for (j=0;currNumDef < atomClean && j<atomCycle[cN].size()-maxAtDef; j++) {
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::defA(int&, int, int, int, std::vector<int>&, std::vector<int>, std::vector<int>&, std::vector<std::vector<int> >&, std::vector<int>&, std::vector<int>&, std::vector<int>&, std::vector<int>&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2107:98: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
2107 | if (baseCycle>0) for (i=0; i<baseCycle; i++) if (cycleDefine[i]==0) if (atomCycle[i].size()<j) {
| ~~~~~~~~~~~~~~~~~~~^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::redraw(std::vector<int>, std::vector<int>, int, int&, int, int, int, bool)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2238:67: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
2238 | for (j=0; j<baseCycle; j++) if(cycleDescription[j].size() == cs) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2240:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
2240 | for (k=0; k<cycleDescription[j].size(); k++) if (bondList[k] != cycleDescription[j][k]) {
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2264:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
2264 | for (j=1; j<cycleDescription[i].size(); j++) {
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2575:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
2575 | if ((nb + i) > dsATN.size()) nb=dsATN.size()-i; // Check added to avoid segfault below, see issue #1851
| ~~~~~~~~~^~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::flipSmall(int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2985:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
2985 | for (i=0; i<list1.size(); i++) {
| ~^~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2965:10: warning: variable 'test' set but not used [-Wunused-but-set-variable]
2965 | bool test;
| ^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::bondEnlarge(int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3024:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3024 | for (i=0; i<list.size(); i++) { //coordinates change
| ~^~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3002:10: warning: variable 'test' set but not used [-Wunused-but-set-variable]
3002 | bool test;
| ^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TSimpleMolecule::correctDblBondStereo()':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3103:26: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits<std::allocator<long unsigned int>, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare]
3103 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1])
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3103:75: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits<std::allocator<long unsigned int>, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare]
3103 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1])
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3105:26: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits<std::allocator<long unsigned int>, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare]
3105 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2])
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3105:75: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits<std::allocator<long unsigned int>, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare]
3105 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2])
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'bool OpenBabel::compareAtoms(int, int, std::vector<std::vector<int>*>)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3127:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int>*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3127 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result;
| ~~~^~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3127:63: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int>*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3127 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result;
| ~~~^~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::makeEquivalentList(std::vector<int>&, bool)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3291:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3291 | for (j=0; j<lL->size(); j++) (*lL)[i]=0;
| ~^~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3299:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3299 | for (i=0; i<equivalenceList.size(); i++) equivalenceList[i]=0;
| ~^~~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3309:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int>*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3309 | for (int i=0; i<aeqList.size(); i++) delete(aeqList.at(i));
| ~^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'bool OpenBabel::incrementValues(std::vector<int>&, std::vector<int>)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3325:13: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const __gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'const int'} [-Wsign-compare]
3325 | if (l <= maxValues[i]) {
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'int OpenBabel::TSimpleMolecule::correctOverlapped()':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3374:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3374 | for (i=0; i<rotBondList.size(); i++)
| ~^~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3427:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3427 | for (i=0; i<inner_bonds.size(); i++) if (inner_bonds[i] != 0) {
| ~^~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3437:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3437 | for (i=0; i<remainder.size(); i++) {
| ~^~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'void OpenBabel::deleteIntElement(std::vector<int>*, int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3540:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
3540 | for (i=0; i<source->size(); i++) if (i != index) {
| ~~^~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4216:19: warning: variable 'nBondsOld' set but not used [-Wunused-but-set-variable]
4216 | int nAtomsOld,nBondsOld,naDef1,naDef,i;
| ^~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4217:10: warning: variable 'test' set but not used [-Wunused-but-set-variable]
4217 | bool test,test1,test2;
| ^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4217:15: warning: variable 'test1' set but not used [-Wunused-but-set-variable]
4217 | bool test,test1,test2;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4217:21: warning: variable 'test2' set but not used [-Wunused-but-set-variable]
4217 | bool test,test1,test2;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4219:40: warning: variable 'xCenter' set but not used [-Wunused-but-set-variable]
4219 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter;
| ^~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4219:48: warning: variable 'yCenter' set but not used [-Wunused-but-set-variable]
4219 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter;
| ^~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'OpenBabel::TEditedMolecule* OpenBabel::TEditedMolecule::extractFragment(int, std::vector<int>*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4410:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4410 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; j<list.size(); j++) if (list[i]>list[j]) {
| ~^~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4410:71: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4410 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; j<list.size(); j++) if (list[i]>list[j]) {
| ~^~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4415:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4415 | for (i=0; i<list.size(); i++) inverseList[list[i]]=i;
| ~^~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4418:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4418 | for (i=0; i<list.size(); i++) {
| ~^~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4399:10: warning: variable 'test' set but not used [-Wunused-but-set-variable]
4399 | bool test;
| ^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'int OpenBabel::TEditedMolecule::prepareQuery(OpenBabel::TSimpleMolecule&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4591:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4591 | for (j=0; j<queryInverse.size(); j++) queryInverse[j]=queryAQTested[j];
| ~^~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4596:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4596 | for (i=0; i<queryQHydr.size(); i++) queryQHydr[i]=queryBQTested[i];
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4601:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4601 | for (i=0; i<bSTestedStore.size(); i++) bSTestedStore[i]=bSTested[i];
| ~^~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TEditedMolecule::removeHydrogen(std::vector<int>*, std::vector<int>*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4636:31: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
4636 | if (qEnumerator->size() != nAtoms()) qEnumerator->resize(nAtoms());
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4637:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4637 | for (i=0; i<qEnumerator->size(); i++) (*qEnumerator)[i]=i;
| ~^~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4666:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4666 | for (j=0; j<qEnumerator->size(); j++) {
| ~^~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TEditedMolecule::fragmentSearch(OpenBabel::TEditedMolecule*, std::vector<int>*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4853:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4853 | if (molecule1->listarSize()>aSTested.size()) aSTested.resize(molecule1->listarSize());
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4854:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4854 | if (molecule1->listarSize()>bSTested.size()) bSTested.resize(molecule1->listarSize());
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4855:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4855 | if (molecule1->listarSize()>queryQHydr.size()) queryQHydr.resize(molecule1->listarSize());
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4856:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4856 | if (molecule1->listarSize()>queryAQTested.size()) queryAQTested.resize(molecule1->listarSize());
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4857:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4857 | if (molecule1->listarSize()>queryBQTested.size()) queryBQTested.resize(molecule1->listarSize());
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4858:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4858 | if (molecule1->listarSize()>queryCurrentAssignment.size()) queryCurrentAssignment.resize(molecule1->listarSize());
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4859:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
4859 | if (this->listarSize()>queryAQTested.size()) queryAQTested.resize(this->listarSize());
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5032:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else]
5032 | if (test2) for (j=0; j<molecule1->nBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0;
| ^
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4840:9: warning: variable 'cycleNumber' set but not used [-Wunused-but-set-variable]
4840 | int cycleNumber;
| ^~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TemplateRedraw::internalBondsPresent(OpenBabel::TEditedMolecule*, OpenBabel::TSimpleMolecule*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5201:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
5201 | for (i=0; i<mQuery->nAtoms(); i++) aList[mQuery->queryAQTested[i]]=1;
| ~^~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5202:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
5202 | for (i=0; i<mQuery->nBonds(); i++) bList[mQuery->queryBQTested[i]]=1;
| ~^~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TemplateRedraw::rotateBondVertically(OpenBabel::TSimpleMolecule*, std::vector<int>, int, double, double, double&, double&, double&, double&, double&, double&, int&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5232:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5232 | for (i=0; i<bondList.size(); i++) {
| ~^~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5277:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5277 | for (i=0; i<bondList.size(); i++) {
| ~^~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TemplateRedraw::selectFragmentConfiguration(OpenBabel::TSimpleMolecule*, std::vector<int>*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5311:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5311 | for (i=0; i<atomList->size(); i++) {
| ~^~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5328:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5328 | for (i=0; i<bondListAll.size(); i++) bondList[i]=bondListAll[i];
| ~^~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5358:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5358 | for (i=0; i<bondList.size(); i++) {
| ~^~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5368:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5368 | for (i=0; i<bondList.size(); i++) {
| ~^~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TemplateRedraw::rescaleSingleFragment(OpenBabel::TSimpleMolecule*, std::vector<int>*, OpenBabel::PartFragmentDefinition&, double)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5399:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5399 | for (i=0; i<atomList->size(); i++) {
| ~^~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5412:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5412 | for (i=0; i<atomList->size(); i++) {
| ~^~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5428:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5428 | for (i=0; i<atomList->size(); i++) {
| ~^~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'int OpenBabel::TemplateRedraw::coordinatesPrepare(OpenBabel::TEditedMolecule&, int, int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5667:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::TEditedMolecule*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5667 | for (i=kk; i<queryData.size(); i++) if ((TEditedMolecule *)queryData[i]->fragmentSearch(&sm,nullptr)) {
| ~^~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5715:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5715 | for (i=0; i<enumerator.size(); i++) enumerator[i]=-1;
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5718:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5718 | for (i=0; i<enumerator.size(); i++) if (enumerator[i]==-1) {
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5726:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5726 | for (j=0; j<enumerator.size(); j++) if (enumerator[j]==i) {
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5798:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::TEditedMolecule*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5798 | for (i=0; i<groupsFind.size(); i++) {
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5828:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::TEditedMolecule*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5828 | for (i=0; i<groupsFind.size(); i++) delete(groupsFind[i]);
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5656:9: warning: variable 'naStore' set but not used [-Wunused-but-set-variable]
5656 | int naStore;
| ^~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TemplateRedraw::redrawFine(OpenBabel::TSimpleMolecule&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5894:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5894 | for (j=0; j<atomList.size(); j++) {
| ~^~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5906:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::TEditedMolecule*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5906 | for (frCount=0; frCount<molList.size(); frCount++) {
| ~~~~~~~^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5922:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::TEditedMolecule*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5922 | for (frCount=0; frCount<molList.size(); frCount++) {
| ~~~~~~~^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5945:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5945 | for (i=0; i<atomList.size(); i++) atomList[i]=i;
| ~^~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5960:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::TEditedMolecule*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5960 | for (frCount=0; frCount<molList.size(); frCount++) {
| ~~~~~~~^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6000:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::PartFragmentDefinition*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6000 | for (i=0;i<frList.size(); i++) {
| ~^~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6007:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::PartFragmentDefinition*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6007 | for (i=0; i<frList.size(); i++) {
| ~^~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6026:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::StereoBondStore*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6026 | for (i=0; i<stereoBondList.size(); i++) {
| ~^~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6034:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::StereoBondStore*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6034 | for (i=0; i<stereoBondList.size(); i++) delete(stereoBondList[i]);
| ~^~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6035:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::PartFragmentDefinition*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6035 | for (i=0; i<frList.size(); i++) delete(frList[i]);
| ~^~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6036:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::TEditedMolecule*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6036 | for (i=0; i<molList.size(); i++) delete(molList[i]);
| ~^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'int OpenBabel::indexOf(std::string, std::string, int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6358:16: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string<char>::size_type' {aka 'const long unsigned int'} [-Wsign-compare]
6358 | if (result == string::npos) result=-1;
| ~~~~~~~^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6359:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6359 | if (result >= instring.length()) result=-1;
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'std::string OpenBabel::getAtomMCDL(OBMol*, int, std::vector<int>, std::vector<int>, std::vector<int>, std::vector<int>)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6546:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6546 | for (j=0; j<priority.size(); j++) priority[j]=0;
| ~^~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6591:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6591 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) {
| ~^~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6593:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6593 | for (j=i+1; j<anumStereo.size(); j++) if ((anumStereo[i] >= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) n++;
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6599:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6599 | for (j=i+1; j<anumStereo.size(); j++) if ((anumStereo[i] >= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) {
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6609:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6609 | for (j=i+1; j<anumStereo.size(); j++) if ((anumStereo[i] >= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-1;
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6612:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6612 | for (j=i+1; j<anumStereo.size(); j++) if ((anumStereo[i] >= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-2;
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6623:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6623 | if (k == 1) for (i=0; i<anumStereo.size(); i++) if (anumStereo[i] == -1) { //all parities should be changed to satisfy..
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6632:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6632 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j<v.size(); j++) {
| ~^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6632:69: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6632 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j<v.size(); j++) {
| ~^~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6642:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6642 | for (i=0; i < v.size(); i++) {
| ~~^~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'std::string OpenBabel::getBondMCDL(OBMol*, int, int, std::vector<int>, std::vector<int>, int (*)[4], std::vector<int>, std::vector<int>)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6843:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6843 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) {
| ~^~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6845:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6845 | for (j=i+1; j<anumStereo.size(); j++) if (bondEquivalent(anumStereo[i],anumStereo[j],eqList,sm)) n++;
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6850:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6850 | for (j=i+1; j<anumStereo.size(); j++) if (bondEquivalent(anumStereo[i],anumStereo[j],eqList,sm)) {
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6864:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6864 | for (j=i+1; j<anumStereo.size(); j++) if (bondEquivalent(anumStereo[i],anumStereo[j],eqList,sm)) {
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6872:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6872 | for (j=i+1; j<anumStereo.size(); j++) if (bondEquivalent(anumStereo[i],anumStereo[j],eqList,sm)) anumStereo[j]=-1;
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6877:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6877 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j<v.size(); j++) {
| ~^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6877:69: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6877 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j<v.size(); j++) {
| ~^~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6887:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6887 | for (i=0; i < v.size(); i++) {
| ~~^~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6680:26: warning: variable 'n4' set but not used [-Wunused-but-set-variable]
6680 | int i,j,n,m,n1,n2,n3,n4,an1,an2,an3,an4,k;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'void OpenBabel::implementAtomStereo(std::vector<int>&, std::vector<int>&, std::vector<int>&, std::vector<double>, std::vector<double>, int, int, std::string)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6960:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
6960 | if (n1 < (astereo.length()-1)) astereo=astereo.substr(n1+1); else astereo="";
| ~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'void OpenBabel::implementBondStereo(std::vector<int>, std::vector<int>, std::vector<double>&, std::vector<double>&, int, int, std::string)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7024:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
7024 | if (n1 < (bstereo.length()-1)) bstereo=bstereo.substr(n1+1); else bstereo="";
| ~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'int OpenBabel::groupRedraw(OBMol*, int, int, bool)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7159:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
7159 | for (i=0; i<atomList.size(); i++) allAtomList[atomList[i]]=1;
| ~^~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7167:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
7167 | for (int i=0; i<atomList.size(); i++) {
| ~^~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'bool OpenBabel::parseFormula(std::string, std::vector<int>&, int&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7209:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
7209 | if (n<value.length()) if ((value.at(n)>='0') && (value.at(n)<='9')) {
| ~^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7212:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
7212 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++;
| ~~^~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7233:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
7233 | if (n<value.length()) if ((value.at(n)>='0') && (value.at(n)<='9')) {
| ~^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7236:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
7236 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++;
| ~~^~~~~~~~~~~~~~~~~~~
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[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/query.cpp.o -MF CMakeFiles/openbabel.dir/query.cpp.o.d -o CMakeFiles/openbabel.dir/query.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/query.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/query.cpp:29:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/bond.h:31,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/query.h:27,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/query.cpp:25:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/residue.cpp.o -MF CMakeFiles/openbabel.dir/residue.cpp.o.d -o CMakeFiles/openbabel.dir/residue.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/residue.cpp
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[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -MF CMakeFiles/openbabel.dir/reactionfacade.cpp.o.d -o CMakeFiles/openbabel.dir/reactionfacade.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/reactionfacade.cpp
/usr/src/RPM/BUILD/openbabel-3.1.1/src/reactionfacade.cpp: In member function 'void OpenBabel::OBReactionFacadePrivate::FindComponents()':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/reactionfacade.cpp:122:15: warning: unused variable 'atm' [-Wunused-variable]
122 | OBAtom* atm = &*atom;
| ^~~
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/mol.cpp.o -MF CMakeFiles/openbabel.dir/mol.cpp.o.d -o CMakeFiles/openbabel.dir/mol.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp: In member function 'unsigned int OpenBabel::OBMol::NumHvyAtoms() const':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp:809:36: warning: unnecessary parentheses in declaration of 'i' [-Wparentheses]
809 | vector<OBAtom*>::const_iterator(i);
| ^~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp:809:36: note: remove parentheses
809 | vector<OBAtom*>::const_iterator(i);
| ^~~
| - -
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp: In member function 'unsigned int OpenBabel::OBMol::GetTotalSpinMultiplicity()':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp:1221:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
1221 | if (chg % 2 != unpaired_electrons %2)
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/spectrophore.cpp.o -MF CMakeFiles/openbabel.dir/spectrophore.cpp.o.d -o CMakeFiles/openbabel.dir/spectrophore.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/spectrophore.cpp
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/tokenst.cpp.o -MF CMakeFiles/openbabel.dir/tokenst.cpp.o.d -o CMakeFiles/openbabel.dir/tokenst.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/tokenst.cpp
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/tautomer.cpp.o -MF CMakeFiles/openbabel.dir/tautomer.cpp.o.d -o CMakeFiles/openbabel.dir/tautomer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/tautomer.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/tautomer.cpp:26:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/tautomer.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/tautomer.cpp:19:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/rotamer.cpp.o -MF CMakeFiles/openbabel.dir/rotamer.cpp.o.d -o CMakeFiles/openbabel.dir/rotamer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp
/usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp: In member function 'void OpenBabel::OBRotamerList::AddRotamer(std::vector<int>)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:410:11: warning: this 'while' clause does not guard... [-Wmisleading-indentation]
410 | while (angle < 0.0)
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:412:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while'
412 | while (angle > 360.0)
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp: In member function 'bool OpenBabel::OBRotamerList::SetCurrentCoordinates(OpenBabel::OBMol&, std::vector<int>)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:543:11: warning: this 'while' clause does not guard... [-Wmisleading-indentation]
543 | while (angle < 0.0)
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:545:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while'
545 | while (angle > 360.0)
| ^~~~~
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[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/transform.cpp.o -MF CMakeFiles/openbabel.dir/transform.cpp.o.d -o CMakeFiles/openbabel.dir/transform.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/transform.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/transform.cpp:23:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/istream:38,
from /usr/include/c++/12/sstream:38,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/transform.cpp:19:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp:19:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF CMakeFiles/openbabel.dir/typer.cpp.o.d -o CMakeFiles/openbabel.dir/typer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/typer.cpp
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[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -MF CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o.d -o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/matrix3x3.cpp
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[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -MF CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o.d -o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp:18:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h: In constructor 'OpenBabel::SVGPainter::SVGPainter(std::ostream&, std::set<std::pair<OpenBabel::OBColor, OpenBabel::OBColor> >*, bool, double, double)':
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:77:11: warning: 'OpenBabel::SVGPainter::m_fontPointSize' will be initialized after [-Wreorder]
77 | int m_fontPointSize;
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:75:12: warning: 'bool OpenBabel::SVGPainter::m_isFillcolor' [-Wreorder]
75 | bool m_isFillcolor;
| ^~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder]
34 | SVGPainter::SVGPainter(ostream& ofs, std::set<ColorGradient>* gradients, bool withViewBox,
| ^~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:75:12: warning: 'OpenBabel::SVGPainter::m_isFillcolor' will be initialized after [-Wreorder]
75 | bool m_isFillcolor;
| ^~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:74:32: warning: 'std::set<std::pair<OpenBabel::OBColor, OpenBabel::OBColor> >* OpenBabel::SVGPainter::m_Gradients' [-Wreorder]
74 | std::set<ColorGradient> *m_Gradients;
| ^~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder]
34 | SVGPainter::SVGPainter(ostream& ofs, std::set<ColorGradient>* gradients, bool withViewBox,
| ^~~~~~~~~~
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o -MF CMakeFiles/openbabel.dir/math/transform3d.cpp.o.d -o CMakeFiles/openbabel.dir/math/transform3d.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/transform3d.cpp
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -MF CMakeFiles/openbabel.dir/depict/depict.cpp.o.d -o CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp
/usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp: In function 'unsigned int OpenBabel::GetAtomSymClass(OBAtom*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:284:11: warning: unused variable 'nclasses' [-Wunused-variable]
284 | int nclasses = end_pos - copy_sym.begin();
| ^~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp: In member function 'virtual void OpenBabel::OBDepictPrivate::DrawAtomLabel(const std::string&, int, const OpenBabel::vector3&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1024:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable]
1024 | OBFontMetrics metrics = painter->GetFontMetrics(str);
| ^~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1029:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable]
1029 | OBFontMetrics metrics = painter->GetFontMetrics(subscript);
| ^~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp: In member function 'void OpenBabel::OBDepictPrivateBallAndStick::DrawAromaticRingBond(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, const OpenBabel::vector3&, double)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1238:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div]
1238 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double));
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1238:100: note: add parentheses around 'sizeof (double)' to silence this warning
1238 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double));
| ^~~~~~~~~~~~~~
| ( )
/usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1237:24: note: array 'dashpattern' declared here
1237 | static const float dashpattern[] = {5., 5.};
| ^~~~~~~~~~~
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gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -MF CMakeFiles/openbabel.dir/conformersearch.cpp.o.d -o CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:22:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/conformersearch.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:20:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector<double*>&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:250:12: warning: unused variable 'score' [-Wunused-variable]
250 | double score = ff->Energy(false); // no gradients
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'bool OpenBabel::OBConformerSearch::Setup(const OpenBabel::OBMol&, int, int, int, int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:351:23: warning: variable 'end_it' set but not used [-Wunused-but-set-variable]
351 | OBRotorIterator end_it = m_rotorList.EndRotors();
| ^~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::local_opt()':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:789:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
789 | for (i = 1; i <= m_rotorList.Size(); ++i, rotor = m_rotorList.NextRotor(ri))
| ~~^~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::reproduce(OpenBabel::RotorKey&, OpenBabel::RotorKey&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:850:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
850 | if (iniche > -1)
| ~~~~~~~^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::share_fitness()':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1005:37: warning: comparison of integer expressions of different signedness: 'std::vector<std::vector<int> >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
1005 | if ((dynamic_niches.size () < nb_niches) && (dynamic_niches.size () %2))
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1020:30: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
1020 | if (dist < min_dist )
| ~~~~~^~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1033:18: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
1033 | if (imax == -1)
| ~~~~~^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1050:40: warning: comparison of integer expressions of different signedness: 'std::vector<std::vector<int> >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
1050 | if (dynamic_niches.size () < nb_niches)
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:976:10: warning: unused variable 'flag_niched' [-Wunused-variable]
976 | bool flag_niched = false;
| ^~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'double OpenBabel::OBConformerSearch::sharing_generation()':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1139:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
1139 | while (ninsert < ((half_pop * 2) / 3))
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1148:24: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
1148 | if (iround < imax)
| ~~~~~~~^~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1156:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
1156 | if (ninsert >= half_pop)
| ~~~~~~~~^~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1181:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
1181 | while (ninsert < half_pop)
| ~~~~~~~~^~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1105:23: warning: unused variable 'lowest' [-Wunused-variable]
1105 | double sum = 0.0, lowest = 0.0, highest = 0.0;
| ^~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1105:37: warning: unused variable 'highest' [-Wunused-variable]
1105 | double sum = 0.0, lowest = 0.0, highest = 0.0;
| ^~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
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[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/tetraplanar.cpp
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[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o CMakeFiles/openbabel.dir/confsearch.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:24:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/atom.h:30,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:22:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp: In constructor 'OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:134:66: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less<double>; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
134 | vec.erase(std::remove_if(vec.begin(), vec.end(), std::bind2nd(std::less<double>(), (cutoff + 0.1) )), vec.end());
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_function.h:1438:
/usr/include/c++/12/backward/binders.h:172:5: note: declared here
172 | bind2nd(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp: In member function 'bool OpenBabel::OBDiversePoses::AddPose(std::vector<OpenBabel::vector3>, double)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:189:14: warning: unused variable 'min_rmsd' [-Wunused-variable]
189 | double min_rmsd = DBL_MAX;
| ^~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp: In member function 'int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:444:77: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus<double>; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
444 | transform(_energies.begin(), _energies.end(), _energies.begin(), bind2nd(std::plus<double>(), energy_offset));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/backward/binders.h:172:5: note: declared here
172 | bind2nd(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/squareplanar.cpp
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -MF CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/cistrans.cpp
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/tetrahedral.cpp
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -MF CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp:29:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.h:28,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp:25:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -MF CMakeFiles/openbabel.dir/stereo/facade.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/facade.cpp
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -MF CMakeFiles/openbabel.dir/stereo/perception.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp
/usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'bool OpenBabel::TetStereoToWedgeHash(OBMol&, std::map<OBBond*, OBStereo::BondDirection>&, std::map<OBBond*, long unsigned int>&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2795:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
2795 | for (std::vector<OBGenericData*>::iterator data = vdata.begin(); data != vdata.end(); ++data)
| ^~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2951:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
2951 | return true;
| ^~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OBMol&, OBStereo::Ref)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2973:16: warning: 'template<class _Operation> class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
2973 | const std::binder1st<std::equal_to<OBStereo::Ref> > equal_to_atomId = std::bind1st (equal_to<OBStereo::Ref>(), atomId);
| ^~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_function.h:1438,
from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/stereo/stereo.h:27,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/stereo/tetranonplanar.h:27,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/stereo/tetrahedral.h:27,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:26:
/usr/include/c++/12/backward/binders.h:108:11: note: declared here
108 | class binder1st
| ^~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2973:88: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to<long unsigned int>; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
2973 | const std::binder1st<std::equal_to<OBStereo::Ref> > equal_to_atomId = std::bind1st (equal_to<OBStereo::Ref>(), atomId);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/backward/binders.h:136:5: note: declared here
136 | bind1st(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OBMol&, OBStereo::Ref, OBStereo::Ref)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:3005:16: warning: 'template<class _Operation> class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
3005 | const std::binder1st<std::equal_to<OBStereo::Ref> > equal_to_implicitRef = std::bind1st (equal_to<OBStereo::Ref>(), (OBStereo::Ref) OBStereo::ImplicitRef);
| ^~~~~~~~~
/usr/include/c++/12/backward/binders.h:108:11: note: declared here
108 | class binder1st
| ^~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:3005:93: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to<long unsigned int>; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
3005 | const std::binder1st<std::equal_to<OBStereo::Ref> > equal_to_implicitRef = std::bind1st (equal_to<OBStereo::Ref>(), (OBStereo::Ref) OBStereo::ImplicitRef);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/backward/binders.h:136:5: note: declared here
136 | bind1st(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
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[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/math/align.cpp.o -MF CMakeFiles/openbabel.dir/math/align.cpp.o.d -o CMakeFiles/openbabel.dir/math/align.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/align.cpp
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/distgeom.cpp.o -MF CMakeFiles/openbabel.dir/distgeom.cpp.o.d -o CMakeFiles/openbabel.dir/distgeom.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:54: warning: ignoring '#pragma warning ' [-Wunknown-pragmas]
54 | #pragma warning(disable : 4244) // warning C4244: '=' : conversion from 'double' to 'float', possible loss of data
|
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:55: warning: ignoring '#pragma warning ' [-Wunknown-pragmas]
55 | #pragma warning(disable : 4305) // warning C4305: '*=' : truncation from 'double' to 'float'
|
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:619:3: warning: multi-line comment [-Wcomment]
619 | // \
| ^
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:38:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/distgeom.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:22:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'bool OpenBabel::OBDistanceGeometry::generateInitialCoords()':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1089:16: warning: unused variable 'lb' [-Wunused-variable]
1089 | double lb = _d->GetLowerBounds(i, j);
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1090:16: warning: unused variable 'ub' [-Wunused-variable]
1090 | double ub = _d->GetUpperBounds(i, j);
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'bool OpenBabel::OBDistanceGeometry::firstMinimization()':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1136:16: warning: unused variable 'lb' [-Wunused-variable]
1136 | double lb = _d->GetLowerBounds(i, j);
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1137:16: warning: unused variable 'ub' [-Wunused-variable]
1137 | double ub = _d->GetUpperBounds(i, j);
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1115:9: warning: unused variable 'niter' [-Wunused-variable]
1115 | int niter = solver.minimize(fun, _coord, fx);
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'bool OpenBabel::OBDistanceGeometry::minimizeFourthDimension()':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1160:9: warning: unused variable 'niter' [-Wunused-variable]
1160 | int niter = solver.minimize(fun, _coord, fx);
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'double OpenBabel::DistGeomFunc::operator()(const Eigen::VectorXd&, Eigen::VectorXd&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1325:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::Index' {aka 'long int'} [-Wsign-compare]
1325 | for (size_t i=0; i<grad.rows(); i++) {
| ~^~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'double OpenBabel::DistGeomFunc4D::operator()(const Eigen::VectorXd&, Eigen::VectorXd&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1452:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::Index' {aka 'long int'} [-Wsign-compare]
1452 | for (size_t i=0; i<grad.rows(); i++) {
| ~^~~~~~~~~~~~
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/usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp: In function 'CreateAtom':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp:457:53: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
457 | AtomSpec *tmp = new AtomSpec[pat->aalloc];
| ^
/usr/include/c++/12/new:128:26: note: in a call to allocation function 'operator new []' declared here
128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
/usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp:463:47: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
463 | pat->atom = new AtomSpec[pat->aalloc];
| ^
/usr/include/c++/12/new:128:26: note: in a call to allocation function 'operator new []' declared here
128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
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cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake --color=
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/CMakeFiles/plugin_forcefields.dir/DependInfo.cmake --color=
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake --color=
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake --color=
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
/usr/bin/gmake -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/build
/usr/bin/gmake -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build
/usr/bin/gmake -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build
/usr/bin/gmake -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 22%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp:22:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/istream:38,
from /usr/include/c++/12/sstream:38,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp:20:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addfilename.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addfilename.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addfilename.cpp:18:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 24%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eem.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eem.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eem.cpp:24:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eem.cpp:19:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 23%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger2.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger2.cpp:24:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/istream:38,
from /usr/include/c++/12/sstream:38,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger2.cpp:20:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 24%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp:21:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/istream:38,
from /usr/include/c++/12/sstream:38,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp:20:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addinindex.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addinindex.cpp:21:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addinindex.cpp:19:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 23%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmol2format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o CMakeFiles/mol2format.dir/mol2format.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:17:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp: In member function 'virtual bool OpenBabel::MOL2Format::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:422:22: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
422 | if(aid <= mol.NumAtoms())
| ~~~~^~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp: In member function 'virtual int OpenBabel::MOL2Format::SkipObjects(int, OpenBabel::OBConversion*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:785:10: warning: unused variable 'ch' [-Wunused-variable]
785 | char ch = ifs.peek();
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp: At global scope:
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:86:15: warning: 'bool OpenBabel::IsThiocarboxylSulfur(OBAtom*)' defined but not used [-Wunused-function]
86 | static bool IsThiocarboxylSulfur(OBAtom* queryatom)
| ^~~~~~~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 25%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/gasteiger.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/gasteiger.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addpolarh.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addpolarh.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addpolarh.cpp:19:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 26%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp:27:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp:19:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp: In member function 'virtual bool OpenBabel::PatternFP::GetFingerprint(OpenBabel::OBBase*, std::vector<unsigned int>&, int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp:109:13: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
109 | while(n < _bitcount)
| ~~^~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 23%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp:29:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 26%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/groupcontrib.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/groupcontrib.h:27,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/groupcontrib.cpp:33:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/groupcontrib.cpp:25:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 26%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/none.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/none.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/none.cpp:21:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 26%] Linking CXX shared module ../../lib64/mol2format.so
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mol2format.so CMakeFiles/mol2format.dir/mol2format.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 28%] Built target mol2format
gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
/usr/bin/gmake -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake --color=
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
/usr/bin/gmake -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addnonpolarh.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addnonpolarh.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addnonpolarh.cpp:19:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 23%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:35:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:26:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:43:
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h: In function 'unsigned int MDLValence(unsigned int, int, unsigned int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:51:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
51 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:51:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
51 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:64:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
64 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:64:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
64 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:77:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
77 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:77:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
77 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:90:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
90 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:90:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
90 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:103:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
103 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:103:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
103 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:116:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
116 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:116:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
116 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:119:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
119 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:119:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
119 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:121:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
121 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:121:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
121 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:134:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
134 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:134:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
134 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:137:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
137 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:137:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
137 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:139:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
139 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:139:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
139 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:152:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
152 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:152:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
152 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:155:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
155 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:155:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
155 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:157:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
157 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:157:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
157 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:170:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
170 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:170:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
170 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:173:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
173 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:173:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
173 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:175:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
175 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:175:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
175 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:188:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
188 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:188:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
188 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:191:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
191 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:191:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
191 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:193:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
193 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:193:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
193 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:206:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
206 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:206:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
206 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:209:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
209 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:209:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
209 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:211:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
211 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:211:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
211 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:223:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
223 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:223:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
223 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:226:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
226 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:226:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
226 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:228:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
228 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:228:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
228 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:240:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
240 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:240:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
240 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:243:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
243 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:243:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
243 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:245:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
245 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:245:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
245 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:257:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
257 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:257:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
257 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:260:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
260 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:260:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
260 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:262:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
262 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:262:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
262 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:274:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
274 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:274:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
274 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:277:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
277 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:277:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
277 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:279:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
279 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:279:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
279 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:291:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
291 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:291:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
291 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:294:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
294 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:294:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
294 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:296:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
296 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:296:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
296 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:298:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
298 | if (val <= 4) return 4; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:298:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
298 | if (val <= 4) return 4; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:310:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
310 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:310:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
310 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:313:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
313 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:313:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
313 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:315:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
315 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:315:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
315 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:317:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
317 | if (val <= 4) return 4; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:317:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
317 | if (val <= 4) return 4; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:329:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
329 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:329:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
329 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:332:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
332 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:332:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
332 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:334:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
334 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:334:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
334 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:336:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
336 | if (val <= 4) return 4; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:336:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
336 | if (val <= 4) return 4; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:348:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
348 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:348:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
348 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:351:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
351 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:351:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
351 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:353:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
353 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:353:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
353 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:355:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
355 | if (val <= 4) return 4; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:355:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
355 | if (val <= 4) return 4; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:367:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
367 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:367:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
367 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:370:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
370 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:370:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
370 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:372:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
372 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:372:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
372 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:374:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
374 | if (val <= 4) return 4; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:374:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
374 | if (val <= 4) return 4; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:385:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
385 | if (val <= 7) return 7; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:385:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
385 | if (val <= 7) return 7; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:388:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
388 | if (val <= 6) return 6; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:388:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
388 | if (val <= 6) return 6; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:390:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
390 | if (val <= 5) return 5; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:390:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
390 | if (val <= 5) return 5; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:392:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
392 | if (val <= 4) return 4; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:392:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
392 | if (val <= 4) return 4; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:394:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
394 | if (val <= 3) return 3; break;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:394:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
394 | if (val <= 3) return 3; break;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h: In function 'unsigned int HYDValence(unsigned int, int, unsigned int)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:416:11: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
416 | if (val > impval) {
| ~~~~^~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp: In member function 'bool OpenBabel::MDLFormat::ReadAtomBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:1488:10: warning: unused variable 'chiralWatch' [-Wunused-variable]
1488 | bool chiralWatch=false;
| ^~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 27%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/istream:38,
from /usr/include/c++/12/sstream:38,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp:15:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 28%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/filters.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/filters.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:22:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 24%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmilesformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:23:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In constructor 'OpenBabel::OBSmilesParser::OBSmilesParser(bool)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:291:10: warning: 'OpenBabel::OBSmilesParser::_preserve_aromaticity' will be initialized after [-Wreorder]
291 | bool _preserve_aromaticity;
| ^~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:289:9: warning: 'int OpenBabel::OBSmilesParser::_rxnrole' [-Wreorder]
289 | int _rxnrole;
| ^~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:318:5: warning: when initialized here [-Wreorder]
318 | OBSmilesParser(bool preserve_aromaticity=false): _preserve_aromaticity(preserve_aromaticity), _rxnrole(1) { }
| ^~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBSmilesParser::ParseSmiles(OpenBabel::OBMol&, const std::string&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:655:15: warning: variable 'atom' set but not used [-Wunused-but-set-variable]
655 | OBAtom* atom;
| ^~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'int OpenBabel::OBSmilesParser::NumConnections(OpenBabel::OBAtom*, bool)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2200:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
2200 | if (idx-1 < _hcount.size() && _hcount[idx-1] > 0)
| ~~~~~~^~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, std::string&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2685:10: warning: variable 'symbol' set but not used [-Wunused-but-set-variable]
2685 | char symbol[10];
| ^~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2689:10: warning: unused variable 'normalValence' [-Wunused-variable]
2689 | bool normalValence = true;
| ^~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2690:10: warning: unused variable 'writeExplicitHydrogen' [-Wunused-variable]
2690 | bool writeExplicitHydrogen = false;
| ^~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::BuildCanonTree(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::vector<unsigned int>&, OpenBabel::OBCanSmiNode*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3139:22: warning: unused variable 'bond_order' [-Wunused-variable]
3139 | unsigned int bond_order = bond->GetBondOrder();
| ^~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3134:20: warning: unused variable 'nbr_bond_order' [-Wunused-variable]
3134 | unsigned int nbr_bond_order = nbr_bond->GetBondOrder();
| ^~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'std::vector<OpenBabel::OBBondClosureInfo> OpenBabel::OBMol2Cansmi::GetCanonClosureDigits(OpenBabel::OBAtom*, OpenBabel::OBBitVec&, std::vector<unsigned int>&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3286:11: warning: unused variable 'bo' [-Wunused-variable]
3286 | int bo = (bond1->IsAromatic())? 1 : bond1->GetBondOrder(); // CJ: why was this line added? bo is never used?
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'void OpenBabel::OBMol2Cansmi::CreateFragCansmiString(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::string&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3899:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3899 | for (int i=0; i<atom_order.size(); ++i)
| ~^~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3905:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<unsigned int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3905 | for (int i=0; i<canonical_order.size(); ++i)
| ~^~~~~~~~~~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/canonical.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/canonical.cpp:19:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 28%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/mmff94.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/mmff94.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 29%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:22:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/istream:38,
from /usr/include/c++/12/sstream:38,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:20:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:24:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
134 | : public std::binary_function<const std::string&, const std::string&, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const':
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation]
149 | while(p1!=s1.end() && isdigit(*p1++)); --p1;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while'
149 | while(p1!=s1.end() && isdigit(*p1++)); --p1;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation]
154 | while(p2!=s2.end() && isdigit(*p2++)); --p2;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while'
154 | while(p2!=s2.end() && isdigit(*p2++)); --p2;
| ^~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 28%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -MF CMakeFiles/pdbformat.dir/pdbformat.cpp.o.d -o CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp:17:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp:615:26: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
615 | if (origin == pUC->GetSpaceGroup()->HEXAGONAL_ORIGIN)
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 27%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.h:23,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp:23:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:19:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp: In member function 'virtual bool OpenBabel::OpChangeCell::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:88:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OpChangeCell::vc_val>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
88 | for(int i = 0; i < vcvs.size(); i++)
| ~~^~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:119:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OpChangeCell::vc_val>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
119 | for(int i = 0; i < vcvs.size(); i++)
| ~~^~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 29%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp:22:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/istream:38,
from /usr/include/c++/12/sstream:38,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp:20:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 29%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp:21:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp: In member function 'virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp:102:36: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
102 | for ( int i = 1; i <= mol.NumAtoms(); i++)
| ~~^~~~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 29%] Linking CXX shared module ../lib64/plugin_fingerprints.so
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 30%] Built target plugin_fingerprints
gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
/usr/bin/gmake -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake --color=
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
/usr/bin/gmake -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delpolarh.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delpolarh.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delpolarh.cpp:19:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 30%] Linking CXX shared module ../lib64/plugin_descriptors.so
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 30%] Built target plugin_descriptors
gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
/usr/bin/gmake -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake --color=
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
/usr/bin/gmake -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delnonpolarh.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delnonpolarh.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delnonpolarh.cpp:19:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 29%] Linking CXX shared module ../../lib64/pdbformat.so
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 31%] Built target pdbformat
gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
/usr/bin/gmake -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake --color=
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
/usr/bin/gmake -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 30%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:31:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In member function 'virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:2798:32: warning: variable 'bondtype1' set but not used [-Wunused-but-set-variable]
2798 | int angletype, strbndtype, bondtype1, bondtype2;
| ^~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:2798:43: warning: variable 'bondtype2' set but not used [-Wunused-but-set-variable]
2798 | int angletype, strbndtype, bondtype1, bondtype2;
| ^~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool <anonymous> = true]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:289:40: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFBondCalculationMMFF94>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
148 | for (int i = 0; i < _bondcalculations.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool <anonymous> = false]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:289:58: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFBondCalculationMMFF94>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool <anonymous> = true]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:295:41: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFAngleCalculationMMFF94>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
263 | for (int i = 0; i < _anglecalculations.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool <anonymous> = false]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:295:60: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFAngleCalculationMMFF94>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool <anonymous> = true]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:301:42: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFStrBndCalculationMMFF94>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
376 | for (int i = 0; i < _strbndcalculations.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool <anonymous> = false]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:301:62: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFStrBndCalculationMMFF94>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool <anonymous> = true]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:307:43: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFTorsionCalculationMMFF94>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
512 | for (int i = 0; i < _torsioncalculations.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool <anonymous> = false]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:307:64: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFTorsionCalculationMMFF94>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool <anonymous> = true]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:313:39: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFOOPCalculationMMFF94>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
610 | for (int i = 0; i < _oopcalculations.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool <anonymous> = false]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:313:56: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFOOPCalculationMMFF94>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool <anonymous> = true]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:319:39: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFVDWCalculationMMFF94>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
707 | for (int i = 0; i < _vdwcalculations.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool <anonymous> = false]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:319:56: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFVDWCalculationMMFF94>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool <anonymous> = true]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:325:49: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFElectrostaticCalculationMMFF94>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
793 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool <anonymous> = false]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:325:76: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<OpenBabel::OBFFElectrostaticCalculationMMFF94>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 31%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcopyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -MF CMakeFiles/copyformat.dir/copyformat.cpp.o.d -o CMakeFiles/copyformat.dir/copyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/copyformat.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/copyformat.cpp:14:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen2D.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen2D.cpp:22:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen2D.cpp:21:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 30%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -MF CMakeFiles/asciiformat.dir/asciiformat.cpp.o.d -o CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/asciiformat.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/asciiformat.cpp:19:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 30%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -MF CMakeFiles/inchiformat.dir/inchiformat.cpp.o.d -o CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:23:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:19:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:32:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
134 | : public std::binary_function<const std::string&, const std::string&, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const':
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation]
149 | while(p1!=s1.end() && isdigit(*p1++)); --p1;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while'
149 | while(p1!=s1.end() && isdigit(*p1++)); --p1;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation]
154 | while(p2!=s2.end() && isdigit(*p2++)); --p2;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while'
154 | while(p2!=s2.end() && isdigit(*p2++)); --p2;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp: In member function 'virtual bool OpenBabel::InChIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:193:52: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'AT_NUM' {aka 'short int'} [-Wsign-compare]
193 | if ( !(a->GetId() == ct->end || a->GetId() == stereo.neighbor[0] ) ) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:199:54: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'AT_NUM' {aka 'short int'} [-Wsign-compare]
199 | if ( !(b->GetId() == ct->begin || b->GetId() == stereo.neighbor[3] ) ) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 31%] Linking CXX shared module ../../lib64/copyformat.so
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/copyformat.so CMakeFiles/copyformat.dir/copyformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 31%] Built target copyformat
gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
/usr/bin/gmake -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake --color=
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
/usr/bin/gmake -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 31%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp:18:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h: In member function 'void OpenBabel::OBStopwatch::Start()':
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:65:14: error: 'clock' was not declared in this scope
65 | start= clock();
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:40:1: note: 'clock' is defined in header '<ctime>'; did you forget to '#include <ctime>'?
39 | #include <math.h>
+++ |+#include <ctime>
40 |
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h: In member function 'double OpenBabel::OBStopwatch::Lap()':
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:70:13: error: 'clock' was not declared in this scope
70 | stop= clock();
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:70:13: note: 'clock' is defined in header '<ctime>'; did you forget to '#include <ctime>'?
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:71:40: error: 'CLOCKS_PER_SEC' was not declared in this scope
71 | return((stop - start) / (double) CLOCKS_PER_SEC);
| ^~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:71:40: note: the macro 'CLOCKS_PER_SEC' had not yet been defined
In file included from /usr/include/time.h:33,
from /usr/include/pthread.h:23,
from /usr/include/c++/12/x86_64-alt-linux/bits/gthr-default.h:35,
from /usr/include/c++/12/x86_64-alt-linux/bits/gthr.h:148,
from /usr/include/c++/12/ext/atomicity.h:35,
from /usr/include/c++/12/bits/ios_base.h:39,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/istream:38,
from /usr/include/c++/12/sstream:38,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/painter.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/asciipainter.h:21,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp:19:
/usr/include/bits/time.h:34: note: it was later defined here
34 | #define CLOCKS_PER_SEC ((__clock_t) 1000000)
|
/usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp: In member function 'virtual void OpenBabel::ASCIIPainter::DrawText(double, double, const std::string&)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp:118:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
118 | for (int i=0; i<text.size(); ++i) {
| ~^~~~~~~~~~~~
gmake[2]: *** [src/formats/CMakeFiles/asciiformat.dir/build.make:90: src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o] Error 1
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[1]: *** [CMakeFiles/Makefile2:1649: src/formats/CMakeFiles/asciiformat.dir/all] Error 2
gmake[1]: *** Waiting for unfinished jobs....
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 31%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -MF CMakeFiles/inchiformat.dir/getinchi.cpp.o.d -o CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/getinchi.cpp
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 29%] Linking CXX shared module ../../lib64/mdlformat.so
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 32%] Built target mdlformat
gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/fillUC.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/fillUC.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 31%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -MF CMakeFiles/MNAformat.dir/MNAformat.cpp.o.d -o CMakeFiles/MNAformat.dir/MNAformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MNAformat.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MNAformat.cpp:31:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 32%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/unique.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/unique.cpp:19:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/unique.cpp:23:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
134 | : public std::binary_function<const std::string&, const std::string&, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const':
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation]
149 | while(p1!=s1.end() && isdigit(*p1++)); --p1;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while'
149 | while(p1!=s1.end() && isdigit(*p1++)); --p1;
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation]
154 | while(p2!=s2.end() && isdigit(*p2++)); --p2;
| ^~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while'
154 | while(p2!=s2.end() && isdigit(*p2++)); --p2;
| ^~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp:31:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp:29:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp: In member function 'virtual bool OpenBabel::OpMinimize::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp:265:10: warning: unused variable 'done' [-Wunused-variable]
265 | bool done = true;
| ^~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 31%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:32:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
from /usr/include/c++/12/vector:66,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp: In instantiation of 'void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool <anonymous> = true]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:478:37: required from 'double OpenBabel::OBForceFieldUFF::E_VDW() [with bool <anonymous> = true]'
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.h:193:37: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:431:14: warning: unused variable 'ab' [-Wunused-variable]
431 | double ab[3];
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp: In instantiation of 'void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool <anonymous> = false]':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:478:37: required from 'double OpenBabel::OBForceFieldUFF::E_VDW() [with bool <anonymous> = false]'
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.h:193:54: required from here
/usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:431:14: warning: unused variable 'ab' [-Wunused-variable]
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 32%] Linking CXX shared module ../../lib64/MNAformat.so
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 32%] Built target MNAformat
gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 29%] Linking CXX shared module ../../lib64/smilesformat.so
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 33%] Built target smilesformat
gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/largest.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/largest.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/largest.cpp:19:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen3d.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen3d.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/loader.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/loader.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/loader.cpp:24:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/loader.cpp:19:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 33%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/neutralize.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/neutralize.cpp:19:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp:19:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp: In member function 'virtual bool OpenBabel::OpSplit::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp:92:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
92 | if(!pConv)
| ^~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp:95:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
95 | if(pConv->IsFirstInput())
| ^~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/partialcharges.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/partialcharges.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/optransform.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/optransform.h:21,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/optransform.cpp:19:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/parsmart.h:23,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/phmodel.h:23,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/optransform.h:19:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 32%] Linking CXX shared module ../../lib64/inchiformat.so
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib64/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.cpp.o CMakeFiles/inchiformat.dir/getinchi.cpp.o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz -lcairo ../../lib64/libinchi.so.0.4.1 -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/readconformers.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/readconformers.cpp:19:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 35%] Built target inchiformat
gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/sort.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/sort.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/sort.cpp:19:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/sort.cpp:32:28: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
32 | struct Order : public std::binary_function<std::pair<OBBase*,T>, std::pair<OBBase*,T>, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/ophighlight.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/ophighlight.cpp:17:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/parsmart.h:23,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/ophighlight.cpp:16:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/xout.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/xout.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/xout.cpp:19:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.h:15,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp:17:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/parsmart.h:23,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp:15:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp: In member function 'virtual bool OpenBabel::OpNewS::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp:303:28: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
303 | if(pmol->NumHvyAtoms() != nPatternAtoms)
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:33:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:29:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp: In member function 'virtual bool OpenBabel::OpConformer::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:291:19: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
291 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){
| ~~^~~~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:291:42: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
291 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){
| ~~^~~~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp:23:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp:22:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp: In member function 'void OpenBabel::OpConfab::Run(OpenBabel::OBConversion*, OpenBabel::OBMol*)':
/usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp:167:14: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
167 | for (; c < mol.NumConformers(); ++c) {
| ~~^~~~~~~~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opalign.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opalign.cpp:20:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/bits/locale_classes.h:40,
from /usr/include/c++/12/bits/ios_base.h:41,
from /usr/include/c++/12/ios:42,
from /usr/include/c++/12/ostream:38,
from /usr/include/c++/12/iostream:39,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opalign.cpp:19:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 30%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eqeq.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eqeq.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eqeq.cpp:21:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 32%] Linking CXX shared module ../lib64/plugin_forcefields.so
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_forcefields.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 36%] Built target plugin_forcefields
gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 36%] Linking CXX shared module ../lib64/plugin_ops.so
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_ops.so CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 36%] Built target plugin_ops
gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 34%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qeq.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qeq.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qeq.cpp:21:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 36%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qtpie.cpp
In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qtpie.h:22,
from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qtpie.cpp:21:
/usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 36%] Linking CXX shared module ../lib64/plugin_charges.so
cd /usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib64/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.cpp.o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o CMakeFiles/plugin_charges.dir/charges/none.cpp.o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux/lib64: -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
[ 36%] Built target plugin_charges
gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/x86_64-alt-linux'
gmake: *** [Makefile:146: all] Error 2
error: Bad exit status from /usr/src/tmp/rpm-tmp.8047 (%build)
RPM build errors:
Bad exit status from /usr/src/tmp/rpm-tmp.8047 (%build)
Command exited with non-zero status 1
383.37user 28.03system 1:23.55elapsed 492%CPU (0avgtext+0avgdata 829472maxresident)k
0inputs+0outputs (0major+8555065minor)pagefaults 0swaps
hsh-rebuild: rebuild of `openbabel-3.1.1-alt2.src.rpm' failed.
Command exited with non-zero status 1
4.82user 2.63system 1:56.80elapsed 6%CPU (0avgtext+0avgdata 110436maxresident)k
12208inputs+0outputs (32668major+268682minor)pagefaults 0swaps