<86>Aug 31 07:21:41 userdel[1113065]: delete user 'rooter' <86>Aug 31 07:21:41 userdel[1113065]: removed group 'rooter' owned by 'rooter' <86>Aug 31 07:21:41 userdel[1113065]: removed shadow group 'rooter' owned by 'rooter' <86>Aug 31 07:21:41 groupadd[1113120]: group added to /etc/group: name=rooter, GID=1826 <86>Aug 31 07:21:41 groupadd[1113120]: group added to /etc/gshadow: name=rooter <86>Aug 31 07:21:41 groupadd[1113120]: new group: name=rooter, GID=1826 <86>Aug 31 07:21:41 useradd[1113169]: new user: name=rooter, UID=1826, GID=1826, home=/root, shell=/bin/bash, from=none <86>Aug 31 07:21:41 userdel[1113226]: delete user 'builder' <86>Aug 31 07:21:41 userdel[1113226]: removed group 'builder' owned by 'builder' <86>Aug 31 07:21:41 userdel[1113226]: removed shadow group 'builder' owned by 'builder' <86>Aug 31 07:21:41 groupadd[1113280]: group added to /etc/group: name=builder, GID=1827 <86>Aug 31 07:21:41 groupadd[1113280]: group added to /etc/gshadow: name=builder <86>Aug 31 07:21:41 groupadd[1113280]: new group: name=builder, GID=1827 <86>Aug 31 07:21:41 useradd[1113328]: new user: name=builder, UID=1827, GID=1827, home=/usr/src, shell=/bin/bash, from=none <13>Aug 31 07:21:44 rpmi: libpcre16-8.45-alt2 sisyphus+283722.100.1.2 1629848216 installed <13>Aug 31 07:21:44 rpmi: libpcre3-8.45-alt2 sisyphus+283722.100.1.2 1629848216 installed <13>Aug 31 07:21:44 rpmi: libreadline7-7.0.3-alt5 sisyphus+328858.200.1.1 1694010663 installed <13>Aug 31 07:21:44 rpmi: pcretest-8.45-alt2 sisyphus+283722.100.1.2 1629848216 installed <13>Aug 31 07:21:44 rpmi: libpcre-devel-8.45-alt2 sisyphus+283722.100.1.2 1629848216 installed <13>Aug 31 07:21:44 rpmi: zlib-devel-1.3.1-alt1 sisyphus+342532.100.1.1 1710232285 installed Building target platforms: i586 Building for target i586 Wrote: /usr/src/in/nosrpm/fastq-tools-0.8.3-alt1.nosrc.rpm (w1.gzdio) Installing fastq-tools-0.8.3-alt1.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.23411 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf fastq-tools-0.8.3 + echo 'Source #0 (fastq-tools-0.8.3.tar):' Source #0 (fastq-tools-0.8.3.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/fastq-tools-0.8.3.tar + cd fastq-tools-0.8.3 + /bin/chmod -c -Rf u+rwX,go-w . + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.23411 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd fastq-tools-0.8.3 + autoreconf -fisv autoreconf-default: export WARNINGS= autoreconf-default: Entering directory '.' autoreconf-default: configure.ac: not using Gettext autoreconf-default: running: aclocal --force -I m4 autoreconf-default: configure.ac: tracing autoreconf-default: running: libtoolize --force --install libtoolize-default: putting auxiliary files in '.'. libtoolize-default: linking file './config.guess' libtoolize-default: linking file './config.sub' libtoolize-default: linking file './install-sh' libtoolize-default: linking file './ltmain.sh' libtoolize-default: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize-default: linking file 'm4/libtool.m4' libtoolize-default: linking file 'm4/ltoptions.m4' libtoolize-default: linking file 'm4/ltsugar.m4' libtoolize-default: linking file 'm4/ltversion.m4' libtoolize-default: linking file 'm4/lt~obsolete.m4' autoreconf-default: configure.ac: not using Intltool autoreconf-default: configure.ac: not using Gtkdoc autoreconf-default: running: aclocal --force -I m4 autoreconf-default: running: /usr/bin/autoconf-2.71 --force configure.ac:34: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:34: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:34: the top level autoreconf-default: configure.ac: not using Autoheader autoreconf-default: running: automake --add-missing --force-missing configure.ac:7: installing './compile' configure.ac:4: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' autoreconf-default: Leaving directory '.' + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic' + export CFLAGS + CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic' + export CXXFLAGS + FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic' + export FFLAGS + FCFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic' + export FCFLAGS + '[' -n '' ']' ++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic' ++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g' + ASFLAGS=' -march=i586 -mtune=generic' + export ASFLAGS + export lt_cv_deplibs_check_method=pass_all + lt_cv_deplibs_check_method=pass_all + readlink -e -- ./configure + xargs -ri dirname -- '{}' + xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n' + sort -u + xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess + configure_runstatedir_flags= + grep -qF runstatedir=DIR ./configure + configure_runstatedir_flags=--runstatedir=/var/run + ./configure --build=i586-alt-linux --host=i586-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --runstatedir=/var/run --without-included-gettext configure: WARNING: unrecognized options: --without-included-gettext checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether make supports the include directive... yes (GNU style) checking for i586-alt-linux-gcc... i586-alt-linux-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether i586-alt-linux-gcc accepts -g... yes checking for i586-alt-linux-gcc option to enable C11 features... none needed checking whether i586-alt-linux-gcc understands -c and -o together... yes checking dependency style of i586-alt-linux-gcc... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for i586-alt-linux-gcc... (cached) i586-alt-linux-gcc checking whether the compiler supports GNU C... (cached) yes checking whether i586-alt-linux-gcc accepts -g... (cached) yes checking for i586-alt-linux-gcc option to enable C11 features... (cached) none needed checking whether i586-alt-linux-gcc understands -c and -o together... (cached) yes checking dependency style of i586-alt-linux-gcc... (cached) none checking for uint8_t... yes checking for uint16_t... yes checking for int32_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for size_t... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking build system type... i586-alt-linux-gnu checking host system type... i586-alt-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by i586-alt-linux-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i586-alt-linux-gnu file names to i586-alt-linux-gnu format... func_convert_file_noop checking how to convert i586-alt-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for i586-alt-linux-file... no checking for file... file checking for i586-alt-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... (cached) pass_all checking for i586-alt-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i586-alt-linux-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for i586-alt-linux-strip... no checking for strip... strip checking for i586-alt-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from i586-alt-linux-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for i586-alt-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if i586-alt-linux-gcc supports -fno-rtti -fno-exceptions... no checking for i586-alt-linux-gcc option to produce PIC... -fPIC -DPIC checking if i586-alt-linux-gcc PIC flag -fPIC -DPIC works... yes checking if i586-alt-linux-gcc static flag -static works... no checking if i586-alt-linux-gcc supports -c -o file.o... yes checking if i586-alt-linux-gcc supports -c -o file.o... (cached) yes checking whether the i586-alt-linux-gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for mkstemp... yes checking for fileno... yes checking for pcre-config... yes checking for getopt.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating doc/Makefile config.status: creating src/version.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --without-included-gettext + make -j16 Making all in src make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' i586-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -D_FILE_OFFSET_BITS=64 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -c -o common.o common.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' i586-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -D_FILE_OFFSET_BITS=64 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -c -o rng.o rng.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' i586-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -D_FILE_OFFSET_BITS=64 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -c -o sw.o sw.c sw.c:40:18: warning: 'sw_mat70_d' defined but not used [-Wunused-const-variable=] 40 | static const int sw_mat70_d[25] = | ^~~~~~~~~~ sw.c:33:18: warning: 'sw_mat50_d' defined but not used [-Wunused-const-variable=] 33 | static const int sw_mat50_d[25] = | ^~~~~~~~~~ make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' i586-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -D_FILE_OFFSET_BITS=64 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -c -o fastq-qual.o fastq-qual.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' i586-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -D_FILE_OFFSET_BITS=64 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -c -o hash_table.o hash_table.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' i586-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -D_FILE_OFFSET_BITS=64 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -c -o parse.o parse.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' i586-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -D_FILE_OFFSET_BITS=64 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -c -o fastq-match.o fastq-match.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' i586-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 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-DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -D_FILE_OFFSET_BITS=64 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -c -o fastq-kmers.o fastq-kmers.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' i586-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 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-DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -D_FILE_OFFSET_BITS=64 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -c -o fastq-qualadj.o fastq-qualadj.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' i586-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -D_FILE_OFFSET_BITS=64 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -c -o fastq-sample.o fastq-sample.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' i586-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -D_FILE_OFFSET_BITS=64 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -c -o fastq-sort.o fastq-sort.c make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-qualadj fastq-qualadj.o common.o parse.o -lm libtool: link: i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-qualadj fastq-qualadj.o common.o parse.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-qual fastq-qual.o common.o parse.o -lm libtool: link: i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-qual fastq-qual.o common.o parse.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-kmers fastq-kmers.o common.o parse.o -lm libtool: link: i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-kmers fastq-kmers.o common.o parse.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-match fastq-match.o common.o parse.o sw.o -lm libtool: link: i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-match fastq-match.o common.o parse.o sw.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-qscale fastq-qscale.o common.o parse.o -lm libtool: link: i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-qscale fastq-qscale.o common.o parse.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-grep fastq-grep.o common.o parse.o -lpcre -lm libtool: link: i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-grep fastq-grep.o common.o parse.o -lpcre -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-uniq fastq-uniq.o common.o parse.o hash_table.o -lm libtool: link: i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-uniq fastq-uniq.o common.o parse.o hash_table.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-sample fastq-sample.o common.o parse.o rng.o -lm -lm libtool: link: i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-sample fastq-sample.o common.o parse.o rng.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /bin/sh ../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-sort fastq-sort.o common.o parse.o -lm libtool: link: i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o fastq-sort fastq-sort.o common.o parse.o -lm make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' Making all in tests make[1]: Nothing to be done for 'all'. Making all in doc make[1]: Nothing to be done for 'all'. make[1]: Nothing to be done for 'all-am'. + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.48845 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/fastq-tools-buildroot + : + /bin/rm -rf -- /usr/src/tmp/fastq-tools-buildroot + PATH=/usr/libexec/rpm-build:/usr/src/bin:/usr/bin:/bin:/usr/local/bin:/usr/games + cd fastq-tools-0.8.3 + make 'INSTALL=/usr/libexec/rpm-build/install -p' install DESTDIR=/usr/src/tmp/fastq-tools-buildroot make: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3' Making install in src make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' /usr/bin/mkdir -p '/usr/src/tmp/fastq-tools-buildroot/usr/bin' /bin/sh ../libtool --mode=install /usr/libexec/rpm-build/install -p fastq-grep fastq-kmers fastq-match fastq-uniq fastq-qual fastq-sample fastq-qualadj fastq-sort fastq-qscale '/usr/src/tmp/fastq-tools-buildroot/usr/bin' libtool: install: /usr/libexec/rpm-build/install -p fastq-grep /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-grep libtool: install: /usr/libexec/rpm-build/install -p fastq-kmers /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-kmers libtool: install: /usr/libexec/rpm-build/install -p fastq-match /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-match libtool: install: /usr/libexec/rpm-build/install -p fastq-uniq /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-uniq libtool: install: /usr/libexec/rpm-build/install -p fastq-qual /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-qual libtool: install: /usr/libexec/rpm-build/install -p fastq-sample /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-sample libtool: install: /usr/libexec/rpm-build/install -p fastq-qualadj /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-qualadj libtool: install: /usr/libexec/rpm-build/install -p fastq-sort /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-sort libtool: install: /usr/libexec/rpm-build/install -p fastq-qscale /usr/src/tmp/fastq-tools-buildroot/usr/bin/fastq-qscale make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/src' Making install in tests make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' Making install in doc make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/doc' make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/doc' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/usr/src/tmp/fastq-tools-buildroot/usr/share/man/man1' /usr/libexec/rpm-build/install -p -m 644 fastq-grep.1 fastq-kmers.1 fastq-match.1 fastq-uniq.1 fastq-sample.1 fastq-sort.1 fastq-qscale.1 '/usr/src/tmp/fastq-tools-buildroot/usr/share/man/man1' make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/doc' make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/doc' make[1]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3' make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3' make[1]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3' make: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3' + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/fastq-tools-buildroot (auto) Verifying and fixing files in /usr/src/tmp/fastq-tools-buildroot (binconfig,pkgconfig,libtool,desktop,gnuconfig) Checking contents of files in /usr/src/tmp/fastq-tools-buildroot/ (default) Compressing files in /usr/src/tmp/fastq-tools-buildroot (auto) Verifying ELF objects in /usr/src/tmp/fastq-tools-buildroot (arch=strict,fhs=strict,lfs=strict,lint=strict,rpath=strict,stack=strict,textrel=strict,unresolved=strict) Splitting links to aliased files under /{,s}bin in /usr/src/tmp/fastq-tools-buildroot Executing(%check): /bin/sh -e /usr/src/tmp/rpm-tmp.48845 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd fastq-tools-0.8.3 + PATH=/usr/src/tmp/fastq-tools-buildroot/usr/bin:/usr/src/bin:/usr/bin:/bin:/usr/local/bin:/usr/games + fastq-grep --version + grep -Fw 'fastq-grep (fastq-tools) 0.8.3' fastq-grep (fastq-tools) 0.8.3 + make -j16 check Making check in src make[1]: Nothing to be done for 'check'. Making check in tests make random_fastq cat_fastq make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' i586-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -D_FILE_OFFSET_BITS=64 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -c -o random_fastq.o random_fastq.c make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' i586-alt-linux-gcc -DPACKAGE_NAME=\"fastq-tools\" -DPACKAGE_TARNAME=\"fastq-tools\" -DPACKAGE_VERSION=\"0.8.3\" -DPACKAGE_STRING=\"fastq-tools\ 0.8.3\" -DPACKAGE_BUGREPORT=\"dcjones@cs.washington.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"fastq-tools\" -DVERSION=\"0.8.3\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DSTDC_HEADERS=1 -D_ALL_SOURCE=1 -D_DARWIN_C_SOURCE=1 -D_GNU_SOURCE=1 -D_HPUX_ALT_XOPEN_SOCKET_API=1 -D_NETBSD_SOURCE=1 -D_OPENBSD_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D__STDC_WANT_IEC_60559_ATTRIBS_EXT__=1 -D__STDC_WANT_IEC_60559_BFP_EXT__=1 -D__STDC_WANT_IEC_60559_DFP_EXT__=1 -D__STDC_WANT_IEC_60559_FUNCS_EXT__=1 -D__STDC_WANT_IEC_60559_TYPES_EXT__=1 -D__STDC_WANT_LIB_EXT2__=1 -D__STDC_WANT_MATH_SPEC_FUNCS__=1 -D_TANDEM_SOURCE=1 -D__EXTENSIONS__=1 -D_FILE_OFFSET_BITS=64 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -c -o cat_fastq.o cat_fastq.c make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' /bin/sh ../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o random_fastq random_fastq.o -lm libtool: link: i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o random_fastq random_fastq.o -lm make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make[2]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' /bin/sh ../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o cat_fastq cat_fastq.o -lm libtool: link: i586-alt-linux-gcc -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -I/usr/include/pcre -o cat_fastq cat_fastq.o -lm make[2]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make check-TESTS make[3]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' PASS: parse_fastq make[3]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' make[3]: Entering directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' ============================================================================ Testsuite summary for fastq-tools 0.8.3 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[3]: Leaving directory '/usr/src/RPM/BUILD/fastq-tools-0.8.3/tests' Making check in doc make[1]: Nothing to be done for 'check'. make[1]: Nothing to be done for 'check-am'. + echo -ne '@a:a\nAAA\n+\n000\n@b:b\nBBB\n+\n111\n@c:c\nCCC\n+\n222\n' + fastq-grep BBB abc + fastq-grep -v BBB abc + fastq-sort b ac + sha256sum --check abc: OK b: OK ac: OK + exit 0 Processing files: fastq-tools-0.8.3-alt1 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.70355 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd fastq-tools-0.8.3 + DOCDIR=/usr/src/tmp/fastq-tools-buildroot/usr/share/doc/fastq-tools + export DOCDIR + /bin/mkdir -p /usr/src/tmp/fastq-tools-buildroot/usr/share/doc/fastq-tools + cp -prL AUTHORS COPYING README.md /usr/src/tmp/fastq-tools-buildroot/usr/share/doc/fastq-tools + chmod -R go-w /usr/src/tmp/fastq-tools-buildroot/usr/share/doc/fastq-tools + chmod -R a+rX /usr/src/tmp/fastq-tools-buildroot/usr/share/doc/fastq-tools + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Wpst8o find-provides: running scripts (debuginfo,lib,pam,perl,pkgconfig,python,python3,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.e1UTjx find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,systemd-services) Requires: /lib/ld-linux.so.2, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.2), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.34), libc.so.6(GLIBC_2.38), libc.so.6(GLIBC_2.4), libm.so.6(GLIBC_2.1), libpcre.so.3 >= set:igW8KBZGd4, rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.ZKdROS Creating fastq-tools-debuginfo package Processing files: fastq-tools-debuginfo-0.8.3-alt1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.32fppo find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.peodzu find-requires: running scripts (debuginfo) Requires: fastq-tools = 0.8.3-alt1, /usr/lib/debug/lib/ld-linux.so.2.debug, debug(libc.so.6), debug(libm.so.6), debug(libpcre.so.3) Adding to fastq-tools-debuginfo a strict dependency on fastq-tools Wrote: /usr/src/RPM/RPMS/i586/fastq-tools-0.8.3-alt1.i586.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/i586/fastq-tools-debuginfo-0.8.3-alt1.i586.rpm (w2.lzdio) 7.36user 7.04system 0:13.87elapsed 103%CPU (0avgtext+0avgdata 27268maxresident)k 0inputs+0outputs (0major+1211488minor)pagefaults 0swaps 3.09user 2.62system 0:22.63elapsed 25%CPU (0avgtext+0avgdata 130472maxresident)k 1160inputs+0outputs (0major+194473minor)pagefaults 0swaps --- fastq-tools-0.8.3-alt1.i586.rpm.repo 2024-06-05 08:31:41.000000000 +0000 +++ fastq-tools-0.8.3-alt1.i586.rpm.hasher 2024-08-31 07:22:00.667381015 +0000 @@ -36,11 +36,11 @@ Provides: fastq-tools = 0.8.3-alt1:sisyphus+350372.600.6.1 -File: /usr/bin/fastq-grep 100755 root:root 4689acfe2438b3859d2bffbfde16bdee -File: /usr/bin/fastq-kmers 100755 root:root 07183f746d4fd940939e2c4be216c4f9 -File: /usr/bin/fastq-match 100755 root:root 8ad49414ad6112db8dfd200e9a2aa3c2 -File: /usr/bin/fastq-qscale 100755 root:root 42393138dca983417e8450cfd70658ee -File: /usr/bin/fastq-qual 100755 root:root 3d525406b9fefc2c8e574b07f67202da -File: /usr/bin/fastq-qualadj 100755 root:root f33991e2217a6bc0133f487d2c07dc31 -File: /usr/bin/fastq-sample 100755 root:root dc736d90efe6ff7154b01464bf224495 -File: /usr/bin/fastq-sort 100755 root:root dc8a3b680984bc0b60653e533f861f28 -File: /usr/bin/fastq-uniq 100755 root:root c5402f623338385d4676dc9d9f930401 +File: /usr/bin/fastq-grep 100755 root:root 796a40c4c73cac6d878bbe161b8ebf9c +File: /usr/bin/fastq-kmers 100755 root:root 7285d058c3d9d7ffcf98d71edefeed77 +File: /usr/bin/fastq-match 100755 root:root d08a4f9575873c5a370acf3cf8c82867 +File: /usr/bin/fastq-qscale 100755 root:root 07062f5aedf16049f24ad9e5b7496ff4 +File: /usr/bin/fastq-qual 100755 root:root fca1625926eefd10e8e06ada4b2c6207 +File: /usr/bin/fastq-qualadj 100755 root:root 03ac72c5a393cad9a3c6586df3909a8d +File: /usr/bin/fastq-sample 100755 root:root 92259c727944ea91dbb758f2bd625181 +File: /usr/bin/fastq-sort 100755 root:root 0301444418f4dbeb5df311ea1d299fa3 +File: /usr/bin/fastq-uniq 100755 root:root f8e84e35f4d4e38addc0418cb490cb16 File: /usr/share/doc/fastq-tools 40755 root:root @@ -56,2 +56,2 @@ File: /usr/share/man/man1/fastq-uniq.1.xz 100644 root:root 997994df49938631b8ac68e8ec7e474f -RPMIdentity: 5c91dbcf493d5653dac721c50e6c02bf3a6c4b3147fe332edc0c0fc6f7afa23672a81d5e6082c5aa948752139b38901e12efd07c7884976fc1e3f129d8b69cdd +RPMIdentity: b6a282c6e2e48d9ca0730978cb0f6a48218564af9b2741529e98ed67e17ab26f766abb491c75c2d8dc029172134de30a70043da187e0d65213ad5d76e8ab2997 --- fastq-tools-debuginfo-0.8.3-alt1.i586.rpm.repo 2024-06-05 08:31:41.000000000 +0000 +++ fastq-tools-debuginfo-0.8.3-alt1.i586.rpm.hasher 2024-08-31 07:22:00.750382388 +0000 @@ -1,28 +1,27 @@ -/usr/lib/debug/.build-id/2a 40755 root:root -/usr/lib/debug/.build-id/2a/5e0c163665feed847d30ac8b7f63781b2cb7c6 120777 root:root ../../../../bin/fastq-sample -/usr/lib/debug/.build-id/2a/5e0c163665feed847d30ac8b7f63781b2cb7c6.debug 120777 root:root ../../usr/bin/fastq-sample.debug -/usr/lib/debug/.build-id/5f 40755 root:root -/usr/lib/debug/.build-id/5f/3b2806d75a07b88227fc21b86047604546cad6 120777 root:root ../../../../bin/fastq-qual -/usr/lib/debug/.build-id/5f/3b2806d75a07b88227fc21b86047604546cad6.debug 120777 root:root ../../usr/bin/fastq-qual.debug -/usr/lib/debug/.build-id/96 40755 root:root -/usr/lib/debug/.build-id/96/f6e181873ed261bc51f33ed72af727a8163c71 120777 root:root ../../../../bin/fastq-uniq -/usr/lib/debug/.build-id/96/f6e181873ed261bc51f33ed72af727a8163c71.debug 120777 root:root ../../usr/bin/fastq-uniq.debug -/usr/lib/debug/.build-id/99 40755 root:root -/usr/lib/debug/.build-id/99/de2da6d7449d47f95637dfb1b7188d378fe87f 120777 root:root ../../../../bin/fastq-match -/usr/lib/debug/.build-id/99/de2da6d7449d47f95637dfb1b7188d378fe87f.debug 120777 root:root ../../usr/bin/fastq-match.debug -/usr/lib/debug/.build-id/b2 40755 root:root -/usr/lib/debug/.build-id/b2/780a069ee245db83e5013582d4fc7f20642b44 120777 root:root ../../../../bin/fastq-kmers -/usr/lib/debug/.build-id/b2/780a069ee245db83e5013582d4fc7f20642b44.debug 120777 root:root ../../usr/bin/fastq-kmers.debug -/usr/lib/debug/.build-id/b9 40755 root:root -/usr/lib/debug/.build-id/b9/9d8d78a3bcb72c5a25729c1cd93975427a78df 120777 root:root ../../../../bin/fastq-qualadj -/usr/lib/debug/.build-id/b9/9d8d78a3bcb72c5a25729c1cd93975427a78df.debug 120777 root:root ../../usr/bin/fastq-qualadj.debug -/usr/lib/debug/.build-id/ce 40755 root:root -/usr/lib/debug/.build-id/ce/bf13781ead90687fc9153bab66395e630ef3cc 120777 root:root ../../../../bin/fastq-sort -/usr/lib/debug/.build-id/ce/bf13781ead90687fc9153bab66395e630ef3cc.debug 120777 root:root ../../usr/bin/fastq-sort.debug -/usr/lib/debug/.build-id/e8 40755 root:root -/usr/lib/debug/.build-id/e8/39095e394524ca3735776aa1ae629495401f63 120777 root:root ../../../../bin/fastq-qscale -/usr/lib/debug/.build-id/e8/39095e394524ca3735776aa1ae629495401f63.debug 120777 root:root ../../usr/bin/fastq-qscale.debug -/usr/lib/debug/.build-id/ef 40755 root:root -/usr/lib/debug/.build-id/ef/8c1982a3720a43f002e9b8dfdff63a49b9e306 120777 root:root 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