<86>May 21 04:23:26 userdel[3756627]: delete user 'rooter'
<86>May 21 04:23:26 userdel[3756627]: removed group 'rooter' owned by 'rooter'
<86>May 21 04:23:26 userdel[3756627]: removed shadow group 'rooter' owned by 'rooter'
<86>May 21 04:23:26 groupadd[3756636]: group added to /etc/group: name=rooter, GID=963
<86>May 21 04:23:26 groupadd[3756636]: group added to /etc/gshadow: name=rooter
<86>May 21 04:23:26 groupadd[3756636]: new group: name=rooter, GID=963
<86>May 21 04:23:26 useradd[3756650]: new user: name=rooter, UID=963, GID=963, home=/root, shell=/bin/bash
<86>May 21 04:23:26 userdel[3756659]: delete user 'builder'
<86>May 21 04:23:26 userdel[3756659]: removed group 'builder' owned by 'builder'
<86>May 21 04:23:26 userdel[3756659]: removed shadow group 'builder' owned by 'builder'
<86>May 21 04:23:26 groupadd[3756665]: group added to /etc/group: name=builder, GID=964
<86>May 21 04:23:26 groupadd[3756665]: group added to /etc/gshadow: name=builder
<86>May 21 04:23:26 groupadd[3756665]: new group: name=builder, GID=964
<86>May 21 04:23:26 useradd[3756672]: new user: name=builder, UID=964, GID=964, home=/usr/src, shell=/bin/bash
/usr/src/in/srpm/RasMol-2.7.5.2-alt5.src.rpm: license not found in '/usr/share/license' directory: GPL-like
warning: user mike does not exist - using root
warning: group mike does not exist - using root
warning: user mike does not exist - using root
warning: group mike does not exist - using root
warning: user mike does not exist - using root
warning: group mike does not exist - using root
warning: user mike does not exist - using root
warning: group mike does not exist - using root
warning: user mike does not exist - using root
warning: group mike does not exist - using root
warning: user mike does not exist - using root
warning: group mike does not exist - using root
warning: user mike does not exist - using root
warning: group mike does not exist - using root
warning: user mike does not exist - using root
warning: group mike does not exist - using root
warning: user mike does not exist - using root
warning: group mike does not exist - using root
<13>May 21 04:23:28 rpmi: xorg-proto-devel-2022.1-alt1 sisyphus+299488.100.1.1 1651731532 installed
<13>May 21 04:23:28 rpmi: libXau-1.0.9-alt1 sisyphus+278247.100.1.1 1626080738 installed
<13>May 21 04:23:28 rpmi: libCVector-1.0.3.1-alt2 1316809891 installed
<13>May 21 04:23:28 rpmi: libquadmath0-11.2.1-alt3 sisyphus+299744.100.2.2 1652834782 installed
<13>May 21 04:23:28 rpmi: libgfortran5-11.2.1-alt3 sisyphus+299744.100.2.2 1652834782 installed
<13>May 21 04:23:28 rpmi: libCBFlib-0.9.2.3-alt3 sisyphus+269998.200.2.1 1618495167 installed
<13>May 21 04:23:28 rpmi: libquadmath11-devel-11.2.1-alt3 sisyphus+299744.100.2.2 1652834782 installed
<13>May 21 04:23:28 rpmi: libCVector-devel-1.0.3.1-alt2 1316809891 installed
<13>May 21 04:23:28 rpmi: libNearTree-5.1.1-alt1 sisyphus+220437.100.1.1 1549114851 installed
<13>May 21 04:23:28 rpmi: libXau-devel-1.0.9-alt1 sisyphus+278247.100.1.1 1626080738 installed
<13>May 21 04:23:28 rpmi: gcc-fortran-common-1.4.27-alt1 sisyphus+278099.1300.1.1 1626028636 installed
<13>May 21 04:23:28 rpmi: libgfortran11-devel-11.2.1-alt3 sisyphus+299744.100.2.2 1652834782 installed
<13>May 21 04:23:28 rpmi: libX11-locales-3:1.8-alt1 sisyphus+299436.100.1.1 1651655356 installed
<13>May 21 04:23:28 rpmi: libXdmcp-1.1.3-alt1 sisyphus+278816.100.1.1 1626219233 installed
<13>May 21 04:23:28 rpmi: libxcb-1.15-alt1 sisyphus+299436.300.1.1 1651655490 installed
<13>May 21 04:23:28 rpmi: libX11-3:1.8-alt1 sisyphus+299436.100.1.1 1651655362 installed
<13>May 21 04:23:28 rpmi: libXext-1.3.4-alt1 sisyphus+278817.100.1.3 1626262589 installed
<13>May 21 04:23:28 rpmi: libXi-1.8-alt1 sisyphus+285490.200.1.1 1632124180 installed
<13>May 21 04:23:28 rpmi: libXfixes-6.0.0-alt1 sisyphus+284644.300.1.1 1630910333 installed
<13>May 21 04:23:29 rpmi: libxcb-devel-1.15-alt1 sisyphus+299436.300.1.1 1651655490 installed
<13>May 21 04:23:29 rpmi: libX11-devel-3:1.8-alt1 sisyphus+299436.100.1.1 1651655362 installed
<13>May 21 04:23:29 rpmi: libXext-devel-1.3.4-alt1 sisyphus+278817.100.1.3 1626262589 installed
<13>May 21 04:23:29 rpmi: libXfixes-devel-6.0.0-alt1 sisyphus+284644.300.1.1 1630910333 installed
<13>May 21 04:23:29 rpmi: libCQRlib-1.1.2-alt2 1316809838 installed
<13>May 21 04:23:29 rpmi: libCQRlib-devel-1.1.2-alt2 1316809838 installed
<13>May 21 04:23:29 rpmi: libXi-devel-1.8-alt1 sisyphus+285490.200.1.1 1632124180 installed
<13>May 21 04:23:29 rpmi: libgfortran-devel-11-alt2 sisyphus+299674.100.2.1 1652813046 installed
<13>May 21 04:23:29 rpmi: libNearTree-devel-5.1.1-alt1 sisyphus+220437.100.1.1 1549114851 installed
<13>May 21 04:23:29 rpmi: libCBFlib-devel-0.9.2.3-alt3 sisyphus+269998.200.2.1 1618495167 installed
<13>May 21 04:23:29 rpmi: xorg-cf-files-1.0.7-alt3 sisyphus+299066.100.1.1 1650986802 installed
<13>May 21 04:23:29 rpmi: imake-1.0.7-alt3 sisyphus+275315.100.2.1 1624906760 installed
Building target platforms: i586
Building for target i586
Wrote: /usr/src/in/nosrpm/RasMol-2.7.5.2-alt5.nosrc.rpm (w1.gzdio)
Installing RasMol-2.7.5.2-alt5.src.rpm
Building target platforms: i586
Building for target i586
Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.43284
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ rm -rf RasMol-2.7.5.2
+ echo 'Source #0 (rasmol-2.7.5.2-13May11.tar.gz):'
Source #0 (rasmol-2.7.5.2-13May11.tar.gz):
+ /bin/gzip -dc /usr/src/RPM/SOURCES/rasmol-2.7.5.2-13May11.tar.gz
+ /bin/tar -xf -
+ cd RasMol-2.7.5.2
+ /bin/chmod -c -Rf u+rwX,go-w .
+ echo 'Patch #0 (RasMol-2.7.5-gentoo-bundled-lib.patch):'
Patch #0 (RasMol-2.7.5-gentoo-bundled-lib.patch):
+ /usr/bin/patch -p1
patching file src/Imakefile
patching file src/Makefile.in
+ sed -i 's,^#include \(<\|"\)cbf,#include \1cbf/cbf,' src/cif.h src/maps.c
+ exit 0
Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.43284
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd RasMol-2.7.5.2
+ CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic'
+ pushd src
~/RPM/BUILD/RasMol-2.7.5.2/src ~/RPM/BUILD/RasMol-2.7.5.2
+ xmkmf
imake -DUseInstalled -I/usr/share/X11/config
In file included from /usr/share/X11/config/Imake.tmpl:110,
from Imakefile.c:34:
/usr/share/X11/config/linux.cf:198: warning: "XAppLoadDir" redefined
198 | # define XAppLoadDir /usr/share/X11/app-defaults
|
In file included from /usr/share/X11/config/site.def:45,
from /usr/share/X11/config/Imake.tmpl:47,
from Imakefile.c:34:
/usr/share/X11/config/host.def:29: note: this is the location of the previous definition
29 | #define XAppLoadDir /etc/X11/app-defaults
|
In file included from /usr/share/X11/config/site.def:155,
from /usr/share/X11/config/Imake.tmpl:116,
from Imakefile.c:34:
/usr/share/X11/config/host.def:29: warning: "XAppLoadDir" redefined
29 | #define XAppLoadDir /etc/X11/app-defaults
|
In file included from /usr/share/X11/config/Imake.tmpl:110,
from Imakefile.c:34:
/usr/share/X11/config/linux.cf:198: note: this is the location of the previous definition
198 | # define XAppLoadDir /usr/share/X11/app-defaults
|
In file included from /usr/share/X11/config/Imake.tmpl:2147,
from Imakefile.c:34:
/usr/share/X11/config/X11.rules:39: warning: "XBinDir" redefined
39 | # define XBinDir $(XPROJECTROOT)/bin
|
In file included from /usr/share/X11/config/site.def:155,
from /usr/share/X11/config/Imake.tmpl:116,
from Imakefile.c:34:
/usr/share/X11/config/host.def:14: note: this is the location of the previous definition
14 | #define XBinDir /usr/bin
|
In file included from /usr/share/X11/config/Imake.tmpl:2147,
from Imakefile.c:34:
/usr/share/X11/config/X11.rules:47: warning: "XUsrLibDirPath" redefined
47 | # define XUsrLibDirPath $(USRLIBDIR):$(XPROJECTROOT)/lib
|
In file included from /usr/share/X11/config/site.def:155,
from /usr/share/X11/config/Imake.tmpl:116,
from Imakefile.c:34:
/usr/share/X11/config/host.def:16: note: this is the location of the previous definition
16 | #define XUsrLibDirPath /usr/lib
|
+ subst s/-mcpu=i686/-mtune=i686/ Makefile
+ make clean rasmol DEPTHDEF=-DEIGHTBIT
make: Entering directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src'
rm -f rasmol._man
rm -f rasmol
rm -f gtkui.h rasmol.man
rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"*
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/stdlib.h:26,
from rasmol.c:203:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
rasmol.c:1170:15: warning: 'DetermineRasMolPath' defined but not used [-Wunused-function]
1170 | static size_t DetermineRasMolPath( char * rpath, size_t maxlen) {
| ^~~~~~~~~~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from molecule.c:220:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
molecule.c: In function 'CreateSurfaceBonds':
molecule.c:2152:27: warning: variable 'dz' set but not used [-Wunused-but-set-variable]
2152 | register Long dx, dy, dz;
| ^~
molecule.c:2152:23: warning: variable 'dy' set but not used [-Wunused-but-set-variable]
2152 | register Long dx, dy, dz;
| ^~
molecule.c:2152:19: warning: variable 'dx' set but not used [-Wunused-but-set-variable]
2152 | register Long dx, dy, dz;
| ^~
At top level:
molecule.c:1722:13: warning: 'TestSurface' defined but not used [-Wunused-function]
1722 | static void TestSurface( RAtom __far *sptr, RAtom __far *dptr )
| ^~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from abstree.c:81:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from cmndline.c:82:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
cmndline.c: In function 'ProcessMouseMove':
cmndline.c:929:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
929 | for (index=0; index<10; index++)
| ^~~
cmndline.c:931:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
931 | SaveQuat.w = DialQRot.w;
| ^~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from command.c:91:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
command.c: In function 'Find_Symbol_Definition':
command.c:1072:18: warning: variable 'prevsymbol' set but not used [-Wunused-but-set-variable]
1072 | Symbol __far * prevsymbol;
| ^~~~~~~~~~
command.c: In function 'PlayMovieFrame':
command.c:1493:13: warning: variable 'checkfile' set but not used [-Wunused-but-set-variable]
1493 | int checkfile;
| ^~~~~~~~~
command.c: In function 'ParseExpression':
command.c:2215:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2215 | case(SheetTok): if( Info.laddercount < 0 )
| ^~
command.c:2217:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2217 | pred = PredSheet;
| ^~~~
command.c:2219:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2219 | case(TurnTok): if( Info.turncount < 0 )
| ^~
command.c:2221:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2221 | pred = PredTurn;
| ^~~~
command.c:2223:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2223 | case(CystineTok): if( Info.ssbondcount < 0 )
| ^~
command.c:2225:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2225 | pred = PredCystine;
| ^~~~
command.c:2227:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2227 | case(CisBondedTok):if( Info.cisbondcount<0 )
| ^~
command.c:2229:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2229 | pred = PredCisBond;
| ^~~~
command.c:2328:31: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2328 | case('-'): if( NextIf(NumberTok,ErrNotNum) )
| ^~
command.c:2330:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2330 | return( ParseRange(True) );
| ^~~~~~
command.c: In function 'ReadAtomSelection':
command.c:4261:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
4261 | for( QAtom=QGroup->alist; QAtom; QAtom=QAtom->anext )
| ^~~
command.c:4263:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
4263 | SelectCount = 0;
| ^~~~~~~~~~~
command.c:4279:25: warning: value computed is not used [-Wunused-value]
4279 | *TokenPtr--;
| ^~~~~~~~~~~
command.c:4296:41: warning: value computed is not used [-Wunused-value]
4296 | *TokenPtr--;
| ^~~~~~~~~~~
command.c:4337:13: warning: value computed is not used [-Wunused-value]
4337 | *TokenPtr++;
| ^~~~~~~~~~~
command.c: In function 'ApplyMapAtomSelection':
command.c:4752:12: warning: unused variable 'visits' [-Wunused-variable]
4752 | size_t visits;
| ^~~~~~
command.c: In function 'ExecuteCommandOne':
command.c:7488:27: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
7488 | case(ResetTok): for( i=0; i<10; i++ )
| ^~~
command.c:7490:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
7490 | ReDrawFlag |= RFDials;
| ^~~~~~~~~~
command.c:7501:27: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
7501 | case(HelpTok): if( !HelpFileName )
| ^~
command.c:7503:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
7503 | if( HelpInfo )
| ^~
command.c: In function 'ExecuteIPCCommand':
command.c:7964:16: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
7964 | } else if( *ptr=='[' )
| ^~
command.c:7967:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
7967 | if( len < MAXBUFFLEN-1 )
| ^~
At top level:
command.c:902:12: warning: 'Define_Symbol' defined but not used [-Wunused-function]
902 | static int Define_Symbol(const char __far * string, const char __far * definition) {
| ^~~~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from transfor.c:198:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
transfor.c: In function 'SetVanWaalRadius':
transfor.c:559:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
559 | if( (ptr->irad)+iProbeRad>MaxAtomRadius )
| ^~
transfor.c:561:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
561 | ptr->flag |= ExpandFlag;
| ^~~
transfor.c:563:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
563 | if( ptr->irad>MaxAtomRadius )
| ^~
transfor.c:565:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
565 | ptr->flag &= ~ExpandFlag;
| ^~~
transfor.c: In function 'ColourPointAttrib':
transfor.c:2282:33: warning: variable 'result' set but not used [-Wunused-but-set-variable]
2282 | register int i,shade,nshade,result;
| ^~~~~~
transfor.c: In function 'StructColourAttrib':
transfor.c:3064:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
3064 | if( !Database )
| ^~
transfor.c:3066:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
3066 | ColourBondNone();
| ^~~~~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from render.c:189:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
render.c: In function 'PickAtoms':
render.c:2076:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2076 | if( !QAtom )
| ^~
render.c:2079:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2079 | if( PickMode==PickCentr && shift )
| ^~
render.c:2173:15: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
2173 | } else
| ^~~~
render.c:2175:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
2175 | QAtom->label = label;
| ^~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from repres.c:234:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
repres.c: In function 'TestSolventDot':
repres.c:987:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
987 | if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1;
| ^~
repres.c:987:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
987 | if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1;
| ^~
repres.c:988:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
988 | if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1;
| ^~
repres.c:988:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
988 | if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1;
| ^~
repres.c:989:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
989 | if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1;
| ^~
repres.c:989:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
989 | if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1;
| ^~
repres.c: In function 'CalculateSurface':
repres.c:1113:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1113 | if( !Database )
| ^~
repres.c:1116:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1116 | DotCount = density;
| ^~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from pixutils.c:183:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
pixutils.c: In function 'ClipDashLine':
pixutils.c:645:23: warning: variable 'ca' set but not used [-Wunused-but-set-variable]
645 | register Pixel c, ca, mid;
| ^~
pixutils.c: In function 'DrawCircle':
pixutils.c:2606:13: warning: variable 'updown' set but not used [-Wunused-but-set-variable]
2606 | int updown, ifirst;
| ^~~~~~
pixutils.c: In function 'DrawCylinderCaps':
pixutils.c:2986:21: warning: variable 'alts' set but not used [-Wunused-but-set-variable]
2986 | register int p, alts, altc;
| ^~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from outfile.c:170:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
outfile.c: In function 'WriteVectDots':
outfile.c:1998:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable]
1998 | register int temp, tump;
| ^~~~
outfile.c:1998:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
1998 | register int temp, tump;
| ^~~~
outfile.c: In function 'WriteVectMapPoints':
outfile.c:2038:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable]
2038 | register int temp, tump;
| ^~~~
outfile.c:2038:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
2038 | register int temp, tump;
| ^~~~
outfile.c: In function 'R3DSphere':
outfile.c:2601:31: warning: variable 'z1' set but not used [-Wunused-but-set-variable]
2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/
| ^~
outfile.c:2601:27: warning: variable 'y1' set but not used [-Wunused-but-set-variable]
2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/
| ^~
outfile.c:2601:23: warning: variable 'x1' set but not used [-Wunused-but-set-variable]
2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/
| ^~
outfile.c: In function 'R3DStrandRibbon':
outfile.c:2956:28: warning: variable 'qsz' set but not used [-Wunused-but-set-variable]
2956 | register int qsx, qsy, qsz;
| ^~~
At top level:
outfile.c:2082:13: warning: 'WriteVectMapBonds' defined but not used [-Wunused-function]
2082 | static void WriteVectMapBonds( void) {
| ^~~~~~~~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from script.c:164:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
script.c:2342:13: warning: 'WriteVRMLLine' defined but not used [-Wunused-function]
2342 | static void WriteVRMLLine( int src, int dst, int shade, int *flag )
| ^~~~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from infile.c:196:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
infile.c: In function 'ApplyBondInfo':
infile.c:671:14: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
671 | for(aptr2=group2->alist; aptr2; aptr2=aptr2->anext)
| ^~~
infile.c:696:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
696 | if (AtomNum1) break;
| ^~
infile.c: In function 'LoadXYZMolecule':
infile.c:1365:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1365 | if( !FetchRecord(DataFile,Record) )
| ^~
infile.c:1367:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1367 | xpos = ypos = zpos = 0.0;
| ^~~~
infile.c: In function 'LoadCIFMolecule':
infile.c:2210:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2210 | if (!cif_datablock_name (cif, &dbname))
| ^~
infile.c:2212:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2212 | Info.moleculename[55] = '\0';
| ^~~~
infile.c:3232:13: warning: variable 'oNMRModel' set but not used [-Wunused-but-set-variable]
3232 | int oNMRModel;
| ^~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/string.h:26,
from tokens.c:194:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from cif_fract.c:197:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif.o cif.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from cif.c:278:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_ctonum.o cif_ctonum.c
cif_ctonum.c:198: warning: "_USE_RASMOL_H_" redefined
198 | #define _USE_RASMOL_H_
|
<command-line>: note: this is the location of the previous definition
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from cif_ctonum.c:200:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_stx.o cif_stx.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/stdio.h:27,
from cif_stx.c:227:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o multiple.o multiple.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from multiple.c:225:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o vector.o vector.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from vector.c:159:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o wbrotate.o wbrotate.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from wbrotate.c:201:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o langsel_unix.o langsel_unix.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/stdio.h:27,
from langsel_unix.c:114:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
langsel_unix.c: In function 'SwitchLang':
langsel_unix.c:2347:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2347 | if (Interactive)
| ^~
langsel_unix.c:2349:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2349 | if (Language != lang) {
| ^~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o maps.o maps.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/stdio.h:27,
from maps.c:81:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
maps.c: In function 'SaveMapFile':
maps.c:429:55: warning: variable 'fcmapmask_zbase' set but not used [-Wunused-but-set-variable]
429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.;
| ^~~~~~~~~~~~~~~
maps.c:429:36: warning: variable 'fcmapmask_ybase' set but not used [-Wunused-but-set-variable]
429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.;
| ^~~~~~~~~~~~~~~
maps.c:429:16: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable]
429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.;
| ^~~~~~~~~~~~~~~
maps.c:428:48: warning: variable 'fcmap_zbase' set but not used [-Wunused-but-set-variable]
428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.;
| ^~~~~~~~~~~
maps.c:428:32: warning: variable 'fcmap_ybase' set but not used [-Wunused-but-set-variable]
428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.;
| ^~~~~~~~~~~
maps.c:428:16: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable]
428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.;
| ^~~~~~~~~~~
maps.c: In function 'LoadCBFMapFile':
maps.c:1940:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1940 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1940:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1940 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1945:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1945 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1945:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1945 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1950:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1950 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1950:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1950 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1955:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1955 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1955:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1955 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1966:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1966 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1966:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1966 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1976:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1976 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1976:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1976 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1981:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1981 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1981:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1981 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1986:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1986 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1986:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1986 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1991:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1991 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1991:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1991 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:2001:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2001 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:2001:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2001 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:2023:11: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2023 | if (map) _ffree(map); if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:2023:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2023 | if (map) _ffree(map); if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:2093:11: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2093 | if (map) _ffree(map); if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:2093:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2093 | if (map) _ffree(map); if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1758:12: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable]
1758 | double fcmapmask_xbase, fcmapmask_ybase, fcmapmask_zbase;
| ^~~~~~~~~~~~~~~
maps.c:1757:12: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable]
1757 | double fcmap_xbase, fcmap_ybase, fcmap_zbase;
| ^~~~~~~~~~~
maps.c:1756:12: warning: variable 'ocmapmask_xbase' set but not used [-Wunused-but-set-variable]
1756 | double ocmapmask_xbase, ocmapmask_ybase, ocmapmask_zbase;
| ^~~~~~~~~~~~~~~
maps.c:1755:12: warning: variable 'ocmap_xbase' set but not used [-Wunused-but-set-variable]
1755 | double ocmap_xbase, ocmap_ybase, ocmap_zbase;
| ^~~~~~~~~~~
maps.c:1754:12: warning: variable 'mapmask_xbase' set but not used [-Wunused-but-set-variable]
1754 | Long mapmask_xbase, mapmask_ybase, mapmask_zbase;
| ^~~~~~~~~~~~~
maps.c:1753:12: warning: variable 'map_xbase' set but not used [-Wunused-but-set-variable]
1753 | Long map_xbase, map_ybase, map_zbase;
| ^~~~~~~~~
maps.c: In function 'LoadCCP4MapFile':
maps.c:2988:9: warning: variable 'rawelsize' set but not used [-Wunused-but-set-variable]
2988 | int rawelsize;
| ^~~~~~~~~
In file included from maps.c:96:
maps.c: In function 'map_points':
maps.c:4575:42: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress]
4575 | MapPointm2o(map,mp,gradient);
| ^~~~~~~~
maps.h:187:10: note: in definition of macro 'MapPointm2o'
187 | if (gradient) { \
| ^~~~~~~~
maps.c:4598:44: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress]
4598 | MapPointm2o(map,mp,gradient);
| ^~~~~~~~
maps.h:187:10: note: in definition of macro 'MapPointm2o'
187 | if (gradient) { \
| ^~~~~~~~
maps.c:4399:12: warning: variable 'koffsets' set but not used [-Wunused-but-set-variable]
4399 | Long koffsets[3][2]; /* The offsets back to the prior cells */
| ^~~~~~~~
maps.c:4398:11: warning: variable 'odirs' set but not used [-Wunused-but-set-variable]
4398 | int odirs[3][2]; /* {Y,Z}, {Z,X}, {X,Y} */
| ^~~~~
maps.c:4396:39: warning: variable 'havebody' set but not used [-Wunused-but-set-variable]
4396 | int haveedges[3], havefaces[3], havebody;
| ^~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o x11win.o x11win.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/stdlib.h:26,
from x11win.c:232:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
rm -f rasmol
gcc -m32 -o rasmol -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -L/usr/lib -L/usr/lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -lcbf -lCQRlib -lCVector -lCNearTree -lgfortran
make: Leaving directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src'
+ mv rasmol rasmol-8bpp
+ make clean rasmol DEPTHDEF=-DSIXTEENBIT
make: Entering directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src'
rm -f rasmol._man
rm -f rasmol
rm -f gtkui.h rasmol.man
rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"*
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/stdlib.h:26,
from rasmol.c:203:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
rasmol.c:1170:15: warning: 'DetermineRasMolPath' defined but not used [-Wunused-function]
1170 | static size_t DetermineRasMolPath( char * rpath, size_t maxlen) {
| ^~~~~~~~~~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from molecule.c:220:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
molecule.c: In function 'CreateSurfaceBonds':
molecule.c:2152:27: warning: variable 'dz' set but not used [-Wunused-but-set-variable]
2152 | register Long dx, dy, dz;
| ^~
molecule.c:2152:23: warning: variable 'dy' set but not used [-Wunused-but-set-variable]
2152 | register Long dx, dy, dz;
| ^~
molecule.c:2152:19: warning: variable 'dx' set but not used [-Wunused-but-set-variable]
2152 | register Long dx, dy, dz;
| ^~
At top level:
molecule.c:1722:13: warning: 'TestSurface' defined but not used [-Wunused-function]
1722 | static void TestSurface( RAtom __far *sptr, RAtom __far *dptr )
| ^~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from abstree.c:81:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from cmndline.c:82:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
cmndline.c: In function 'ProcessMouseMove':
cmndline.c:929:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
929 | for (index=0; index<10; index++)
| ^~~
cmndline.c:931:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
931 | SaveQuat.w = DialQRot.w;
| ^~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from command.c:91:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
command.c: In function 'Find_Symbol_Definition':
command.c:1072:18: warning: variable 'prevsymbol' set but not used [-Wunused-but-set-variable]
1072 | Symbol __far * prevsymbol;
| ^~~~~~~~~~
command.c: In function 'PlayMovieFrame':
command.c:1493:13: warning: variable 'checkfile' set but not used [-Wunused-but-set-variable]
1493 | int checkfile;
| ^~~~~~~~~
command.c: In function 'ParseExpression':
command.c:2215:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2215 | case(SheetTok): if( Info.laddercount < 0 )
| ^~
command.c:2217:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2217 | pred = PredSheet;
| ^~~~
command.c:2219:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2219 | case(TurnTok): if( Info.turncount < 0 )
| ^~
command.c:2221:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2221 | pred = PredTurn;
| ^~~~
command.c:2223:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2223 | case(CystineTok): if( Info.ssbondcount < 0 )
| ^~
command.c:2225:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2225 | pred = PredCystine;
| ^~~~
command.c:2227:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2227 | case(CisBondedTok):if( Info.cisbondcount<0 )
| ^~
command.c:2229:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2229 | pred = PredCisBond;
| ^~~~
command.c:2328:31: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2328 | case('-'): if( NextIf(NumberTok,ErrNotNum) )
| ^~
command.c:2330:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2330 | return( ParseRange(True) );
| ^~~~~~
command.c: In function 'ReadAtomSelection':
command.c:4261:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
4261 | for( QAtom=QGroup->alist; QAtom; QAtom=QAtom->anext )
| ^~~
command.c:4263:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
4263 | SelectCount = 0;
| ^~~~~~~~~~~
command.c:4279:25: warning: value computed is not used [-Wunused-value]
4279 | *TokenPtr--;
| ^~~~~~~~~~~
command.c:4296:41: warning: value computed is not used [-Wunused-value]
4296 | *TokenPtr--;
| ^~~~~~~~~~~
command.c:4337:13: warning: value computed is not used [-Wunused-value]
4337 | *TokenPtr++;
| ^~~~~~~~~~~
command.c: In function 'ApplyMapAtomSelection':
command.c:4752:12: warning: unused variable 'visits' [-Wunused-variable]
4752 | size_t visits;
| ^~~~~~
command.c: In function 'ExecuteCommandOne':
command.c:7488:27: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
7488 | case(ResetTok): for( i=0; i<10; i++ )
| ^~~
command.c:7490:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
7490 | ReDrawFlag |= RFDials;
| ^~~~~~~~~~
command.c:7501:27: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
7501 | case(HelpTok): if( !HelpFileName )
| ^~
command.c:7503:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
7503 | if( HelpInfo )
| ^~
command.c: In function 'ExecuteIPCCommand':
command.c:7964:16: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
7964 | } else if( *ptr=='[' )
| ^~
command.c:7967:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
7967 | if( len < MAXBUFFLEN-1 )
| ^~
At top level:
command.c:902:12: warning: 'Define_Symbol' defined but not used [-Wunused-function]
902 | static int Define_Symbol(const char __far * string, const char __far * definition) {
| ^~~~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from transfor.c:198:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
transfor.c: In function 'SetVanWaalRadius':
transfor.c:559:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
559 | if( (ptr->irad)+iProbeRad>MaxAtomRadius )
| ^~
transfor.c:561:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
561 | ptr->flag |= ExpandFlag;
| ^~~
transfor.c:563:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
563 | if( ptr->irad>MaxAtomRadius )
| ^~
transfor.c:565:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
565 | ptr->flag &= ~ExpandFlag;
| ^~~
transfor.c: In function 'ColourPointAttrib':
transfor.c:2282:33: warning: variable 'result' set but not used [-Wunused-but-set-variable]
2282 | register int i,shade,nshade,result;
| ^~~~~~
transfor.c: In function 'StructColourAttrib':
transfor.c:3064:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
3064 | if( !Database )
| ^~
transfor.c:3066:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
3066 | ColourBondNone();
| ^~~~~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from render.c:189:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
render.c: In function 'PickAtoms':
render.c:2076:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2076 | if( !QAtom )
| ^~
render.c:2079:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2079 | if( PickMode==PickCentr && shift )
| ^~
render.c:2173:15: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
2173 | } else
| ^~~~
render.c:2175:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
2175 | QAtom->label = label;
| ^~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from repres.c:234:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
repres.c: In function 'TestSolventDot':
repres.c:987:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
987 | if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1;
| ^~
repres.c:987:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
987 | if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1;
| ^~
repres.c:988:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
988 | if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1;
| ^~
repres.c:988:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
988 | if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1;
| ^~
repres.c:989:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
989 | if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1;
| ^~
repres.c:989:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
989 | if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1;
| ^~
repres.c: In function 'CalculateSurface':
repres.c:1113:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1113 | if( !Database )
| ^~
repres.c:1116:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1116 | DotCount = density;
| ^~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from pixutils.c:183:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
pixutils.c: In function 'ClipDashLine':
pixutils.c:645:23: warning: variable 'ca' set but not used [-Wunused-but-set-variable]
645 | register Pixel c, ca, mid;
| ^~
pixutils.c: In function 'DrawCircle':
pixutils.c:2606:13: warning: variable 'updown' set but not used [-Wunused-but-set-variable]
2606 | int updown, ifirst;
| ^~~~~~
pixutils.c: In function 'DrawCylinderCaps':
pixutils.c:2986:21: warning: variable 'alts' set but not used [-Wunused-but-set-variable]
2986 | register int p, alts, altc;
| ^~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from outfile.c:170:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
outfile.c: In function 'WriteVectDots':
outfile.c:1998:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable]
1998 | register int temp, tump;
| ^~~~
outfile.c:1998:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
1998 | register int temp, tump;
| ^~~~
outfile.c: In function 'WriteVectMapPoints':
outfile.c:2038:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable]
2038 | register int temp, tump;
| ^~~~
outfile.c:2038:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
2038 | register int temp, tump;
| ^~~~
outfile.c: In function 'R3DSphere':
outfile.c:2601:31: warning: variable 'z1' set but not used [-Wunused-but-set-variable]
2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/
| ^~
outfile.c:2601:27: warning: variable 'y1' set but not used [-Wunused-but-set-variable]
2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/
| ^~
outfile.c:2601:23: warning: variable 'x1' set but not used [-Wunused-but-set-variable]
2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/
| ^~
outfile.c: In function 'R3DStrandRibbon':
outfile.c:2956:28: warning: variable 'qsz' set but not used [-Wunused-but-set-variable]
2956 | register int qsx, qsy, qsz;
| ^~~
At top level:
outfile.c:2082:13: warning: 'WriteVectMapBonds' defined but not used [-Wunused-function]
2082 | static void WriteVectMapBonds( void) {
| ^~~~~~~~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from script.c:164:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
script.c:2342:13: warning: 'WriteVRMLLine' defined but not used [-Wunused-function]
2342 | static void WriteVRMLLine( int src, int dst, int shade, int *flag )
| ^~~~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from infile.c:196:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
infile.c: In function 'ApplyBondInfo':
infile.c:671:14: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
671 | for(aptr2=group2->alist; aptr2; aptr2=aptr2->anext)
| ^~~
infile.c:696:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
696 | if (AtomNum1) break;
| ^~
infile.c: In function 'LoadXYZMolecule':
infile.c:1365:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1365 | if( !FetchRecord(DataFile,Record) )
| ^~
infile.c:1367:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1367 | xpos = ypos = zpos = 0.0;
| ^~~~
infile.c: In function 'LoadCIFMolecule':
infile.c:2210:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2210 | if (!cif_datablock_name (cif, &dbname))
| ^~
infile.c:2212:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2212 | Info.moleculename[55] = '\0';
| ^~~~
infile.c:3232:13: warning: variable 'oNMRModel' set but not used [-Wunused-but-set-variable]
3232 | int oNMRModel;
| ^~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/string.h:26,
from tokens.c:194:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from cif_fract.c:197:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif.o cif.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from cif.c:278:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_ctonum.o cif_ctonum.c
cif_ctonum.c:198: warning: "_USE_RASMOL_H_" redefined
198 | #define _USE_RASMOL_H_
|
<command-line>: note: this is the location of the previous definition
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from cif_ctonum.c:200:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_stx.o cif_stx.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/stdio.h:27,
from cif_stx.c:227:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o multiple.o multiple.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from multiple.c:225:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o vector.o vector.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from vector.c:159:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o wbrotate.o wbrotate.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from wbrotate.c:201:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o langsel_unix.o langsel_unix.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/stdio.h:27,
from langsel_unix.c:114:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
langsel_unix.c: In function 'SwitchLang':
langsel_unix.c:2347:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2347 | if (Interactive)
| ^~
langsel_unix.c:2349:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2349 | if (Language != lang) {
| ^~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o maps.o maps.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/stdio.h:27,
from maps.c:81:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
maps.c: In function 'SaveMapFile':
maps.c:429:55: warning: variable 'fcmapmask_zbase' set but not used [-Wunused-but-set-variable]
429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.;
| ^~~~~~~~~~~~~~~
maps.c:429:36: warning: variable 'fcmapmask_ybase' set but not used [-Wunused-but-set-variable]
429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.;
| ^~~~~~~~~~~~~~~
maps.c:429:16: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable]
429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.;
| ^~~~~~~~~~~~~~~
maps.c:428:48: warning: variable 'fcmap_zbase' set but not used [-Wunused-but-set-variable]
428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.;
| ^~~~~~~~~~~
maps.c:428:32: warning: variable 'fcmap_ybase' set but not used [-Wunused-but-set-variable]
428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.;
| ^~~~~~~~~~~
maps.c:428:16: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable]
428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.;
| ^~~~~~~~~~~
maps.c: In function 'LoadCBFMapFile':
maps.c:1940:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1940 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1940:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1940 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1945:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1945 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1945:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1945 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1950:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1950 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1950:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1950 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1955:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1955 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1955:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1955 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1966:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1966 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1966:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1966 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1976:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1976 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1976:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1976 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1981:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1981 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1981:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1981 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1986:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1986 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1986:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1986 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1991:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1991 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1991:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1991 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:2001:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2001 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:2001:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2001 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:2023:11: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2023 | if (map) _ffree(map); if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:2023:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2023 | if (map) _ffree(map); if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:2093:11: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2093 | if (map) _ffree(map); if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:2093:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2093 | if (map) _ffree(map); if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1758:12: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable]
1758 | double fcmapmask_xbase, fcmapmask_ybase, fcmapmask_zbase;
| ^~~~~~~~~~~~~~~
maps.c:1757:12: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable]
1757 | double fcmap_xbase, fcmap_ybase, fcmap_zbase;
| ^~~~~~~~~~~
maps.c:1756:12: warning: variable 'ocmapmask_xbase' set but not used [-Wunused-but-set-variable]
1756 | double ocmapmask_xbase, ocmapmask_ybase, ocmapmask_zbase;
| ^~~~~~~~~~~~~~~
maps.c:1755:12: warning: variable 'ocmap_xbase' set but not used [-Wunused-but-set-variable]
1755 | double ocmap_xbase, ocmap_ybase, ocmap_zbase;
| ^~~~~~~~~~~
maps.c:1754:12: warning: variable 'mapmask_xbase' set but not used [-Wunused-but-set-variable]
1754 | Long mapmask_xbase, mapmask_ybase, mapmask_zbase;
| ^~~~~~~~~~~~~
maps.c:1753:12: warning: variable 'map_xbase' set but not used [-Wunused-but-set-variable]
1753 | Long map_xbase, map_ybase, map_zbase;
| ^~~~~~~~~
maps.c: In function 'LoadCCP4MapFile':
maps.c:2988:9: warning: variable 'rawelsize' set but not used [-Wunused-but-set-variable]
2988 | int rawelsize;
| ^~~~~~~~~
In file included from maps.c:96:
maps.c: In function 'map_points':
maps.c:4575:42: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress]
4575 | MapPointm2o(map,mp,gradient);
| ^~~~~~~~
maps.h:187:10: note: in definition of macro 'MapPointm2o'
187 | if (gradient) { \
| ^~~~~~~~
maps.c:4598:44: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress]
4598 | MapPointm2o(map,mp,gradient);
| ^~~~~~~~
maps.h:187:10: note: in definition of macro 'MapPointm2o'
187 | if (gradient) { \
| ^~~~~~~~
maps.c:4399:12: warning: variable 'koffsets' set but not used [-Wunused-but-set-variable]
4399 | Long koffsets[3][2]; /* The offsets back to the prior cells */
| ^~~~~~~~
maps.c:4398:11: warning: variable 'odirs' set but not used [-Wunused-but-set-variable]
4398 | int odirs[3][2]; /* {Y,Z}, {Z,X}, {X,Y} */
| ^~~~~
maps.c:4396:39: warning: variable 'havebody' set but not used [-Wunused-but-set-variable]
4396 | int haveedges[3], havefaces[3], havebody;
| ^~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o x11win.o x11win.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/stdlib.h:26,
from x11win.c:232:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
rm -f rasmol
gcc -m32 -o rasmol -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -L/usr/lib -L/usr/lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -lcbf -lCQRlib -lCVector -lCNearTree -lgfortran
make: Leaving directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src'
+ mv rasmol rasmol-16bpp
+ make clean rasmol DEPTHDEF=-DTHIRTYTWOBIT
make: Entering directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src'
rm -f rasmol._man
rm -f rasmol
rm -f gtkui.h rasmol.man
rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"*
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/stdlib.h:26,
from rasmol.c:203:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
rasmol.c:1170:15: warning: 'DetermineRasMolPath' defined but not used [-Wunused-function]
1170 | static size_t DetermineRasMolPath( char * rpath, size_t maxlen) {
| ^~~~~~~~~~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from molecule.c:220:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
molecule.c: In function 'CreateSurfaceBonds':
molecule.c:2152:27: warning: variable 'dz' set but not used [-Wunused-but-set-variable]
2152 | register Long dx, dy, dz;
| ^~
molecule.c:2152:23: warning: variable 'dy' set but not used [-Wunused-but-set-variable]
2152 | register Long dx, dy, dz;
| ^~
molecule.c:2152:19: warning: variable 'dx' set but not used [-Wunused-but-set-variable]
2152 | register Long dx, dy, dz;
| ^~
At top level:
molecule.c:1722:13: warning: 'TestSurface' defined but not used [-Wunused-function]
1722 | static void TestSurface( RAtom __far *sptr, RAtom __far *dptr )
| ^~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from abstree.c:81:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from cmndline.c:82:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
cmndline.c: In function 'ProcessMouseMove':
cmndline.c:929:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
929 | for (index=0; index<10; index++)
| ^~~
cmndline.c:931:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
931 | SaveQuat.w = DialQRot.w;
| ^~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from command.c:91:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
command.c: In function 'Find_Symbol_Definition':
command.c:1072:18: warning: variable 'prevsymbol' set but not used [-Wunused-but-set-variable]
1072 | Symbol __far * prevsymbol;
| ^~~~~~~~~~
command.c: In function 'PlayMovieFrame':
command.c:1493:13: warning: variable 'checkfile' set but not used [-Wunused-but-set-variable]
1493 | int checkfile;
| ^~~~~~~~~
command.c: In function 'ParseExpression':
command.c:2215:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2215 | case(SheetTok): if( Info.laddercount < 0 )
| ^~
command.c:2217:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2217 | pred = PredSheet;
| ^~~~
command.c:2219:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2219 | case(TurnTok): if( Info.turncount < 0 )
| ^~
command.c:2221:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2221 | pred = PredTurn;
| ^~~~
command.c:2223:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2223 | case(CystineTok): if( Info.ssbondcount < 0 )
| ^~
command.c:2225:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2225 | pred = PredCystine;
| ^~~~
command.c:2227:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2227 | case(CisBondedTok):if( Info.cisbondcount<0 )
| ^~
command.c:2229:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2229 | pred = PredCisBond;
| ^~~~
command.c:2328:31: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2328 | case('-'): if( NextIf(NumberTok,ErrNotNum) )
| ^~
command.c:2330:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2330 | return( ParseRange(True) );
| ^~~~~~
command.c: In function 'ReadAtomSelection':
command.c:4261:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
4261 | for( QAtom=QGroup->alist; QAtom; QAtom=QAtom->anext )
| ^~~
command.c:4263:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
4263 | SelectCount = 0;
| ^~~~~~~~~~~
command.c:4279:25: warning: value computed is not used [-Wunused-value]
4279 | *TokenPtr--;
| ^~~~~~~~~~~
command.c:4296:41: warning: value computed is not used [-Wunused-value]
4296 | *TokenPtr--;
| ^~~~~~~~~~~
command.c:4337:13: warning: value computed is not used [-Wunused-value]
4337 | *TokenPtr++;
| ^~~~~~~~~~~
command.c: In function 'ApplyMapAtomSelection':
command.c:4752:12: warning: unused variable 'visits' [-Wunused-variable]
4752 | size_t visits;
| ^~~~~~
command.c: In function 'ExecuteCommandOne':
command.c:7488:27: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
7488 | case(ResetTok): for( i=0; i<10; i++ )
| ^~~
command.c:7490:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
7490 | ReDrawFlag |= RFDials;
| ^~~~~~~~~~
command.c:7501:27: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
7501 | case(HelpTok): if( !HelpFileName )
| ^~
command.c:7503:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
7503 | if( HelpInfo )
| ^~
command.c: In function 'ExecuteIPCCommand':
command.c:7964:16: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
7964 | } else if( *ptr=='[' )
| ^~
command.c:7967:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
7967 | if( len < MAXBUFFLEN-1 )
| ^~
At top level:
command.c:902:12: warning: 'Define_Symbol' defined but not used [-Wunused-function]
902 | static int Define_Symbol(const char __far * string, const char __far * definition) {
| ^~~~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from transfor.c:198:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
transfor.c: In function 'SetVanWaalRadius':
transfor.c:559:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
559 | if( (ptr->irad)+iProbeRad>MaxAtomRadius )
| ^~
transfor.c:561:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
561 | ptr->flag |= ExpandFlag;
| ^~~
transfor.c:563:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
563 | if( ptr->irad>MaxAtomRadius )
| ^~
transfor.c:565:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
565 | ptr->flag &= ~ExpandFlag;
| ^~~
transfor.c: In function 'ColourPointAttrib':
transfor.c:2282:33: warning: variable 'result' set but not used [-Wunused-but-set-variable]
2282 | register int i,shade,nshade,result;
| ^~~~~~
transfor.c: In function 'StructColourAttrib':
transfor.c:3064:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
3064 | if( !Database )
| ^~
transfor.c:3066:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
3066 | ColourBondNone();
| ^~~~~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from render.c:189:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
render.c: In function 'PickAtoms':
render.c:2076:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2076 | if( !QAtom )
| ^~
render.c:2079:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2079 | if( PickMode==PickCentr && shift )
| ^~
render.c:2173:15: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
2173 | } else
| ^~~~
render.c:2175:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
2175 | QAtom->label = label;
| ^~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from repres.c:234:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
repres.c: In function 'TestSolventDot':
repres.c:987:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
987 | if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1;
| ^~
repres.c:987:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
987 | if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1;
| ^~
repres.c:988:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
988 | if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1;
| ^~
repres.c:988:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
988 | if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1;
| ^~
repres.c:989:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
989 | if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1;
| ^~
repres.c:989:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
989 | if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1;
| ^~
repres.c: In function 'CalculateSurface':
repres.c:1113:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1113 | if( !Database )
| ^~
repres.c:1116:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1116 | DotCount = density;
| ^~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from pixutils.c:183:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
pixutils.c: In function 'ClipDashLine':
pixutils.c:645:23: warning: variable 'ca' set but not used [-Wunused-but-set-variable]
645 | register Pixel c, ca, mid;
| ^~
pixutils.c: In function 'DrawCircle':
pixutils.c:2606:13: warning: variable 'updown' set but not used [-Wunused-but-set-variable]
2606 | int updown, ifirst;
| ^~~~~~
pixutils.c: In function 'DrawCylinderCaps':
pixutils.c:2986:21: warning: variable 'alts' set but not used [-Wunused-but-set-variable]
2986 | register int p, alts, altc;
| ^~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from outfile.c:170:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
outfile.c: In function 'WriteVectDots':
outfile.c:1998:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable]
1998 | register int temp, tump;
| ^~~~
outfile.c:1998:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
1998 | register int temp, tump;
| ^~~~
outfile.c: In function 'WriteVectMapPoints':
outfile.c:2038:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable]
2038 | register int temp, tump;
| ^~~~
outfile.c:2038:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
2038 | register int temp, tump;
| ^~~~
outfile.c: In function 'R3DSphere':
outfile.c:2601:31: warning: variable 'z1' set but not used [-Wunused-but-set-variable]
2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/
| ^~
outfile.c:2601:27: warning: variable 'y1' set but not used [-Wunused-but-set-variable]
2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/
| ^~
outfile.c:2601:23: warning: variable 'x1' set but not used [-Wunused-but-set-variable]
2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/
| ^~
outfile.c: In function 'R3DStrandRibbon':
outfile.c:2956:28: warning: variable 'qsz' set but not used [-Wunused-but-set-variable]
2956 | register int qsx, qsy, qsz;
| ^~~
At top level:
outfile.c:2082:13: warning: 'WriteVectMapBonds' defined but not used [-Wunused-function]
2082 | static void WriteVectMapBonds( void) {
| ^~~~~~~~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from script.c:164:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
script.c:2342:13: warning: 'WriteVRMLLine' defined but not used [-Wunused-function]
2342 | static void WriteVRMLLine( int src, int dst, int shade, int *flag )
| ^~~~~~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from infile.c:196:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
infile.c: In function 'ApplyBondInfo':
infile.c:671:14: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
671 | for(aptr2=group2->alist; aptr2; aptr2=aptr2->anext)
| ^~~
infile.c:696:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
696 | if (AtomNum1) break;
| ^~
infile.c: In function 'LoadXYZMolecule':
infile.c:1365:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1365 | if( !FetchRecord(DataFile,Record) )
| ^~
infile.c:1367:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1367 | xpos = ypos = zpos = 0.0;
| ^~~~
infile.c: In function 'LoadCIFMolecule':
infile.c:2210:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2210 | if (!cif_datablock_name (cif, &dbname))
| ^~
infile.c:2212:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2212 | Info.moleculename[55] = '\0';
| ^~~~
infile.c:3232:13: warning: variable 'oNMRModel' set but not used [-Wunused-but-set-variable]
3232 | int oNMRModel;
| ^~~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/string.h:26,
from tokens.c:194:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from cif_fract.c:197:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif.o cif.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from cif.c:278:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_ctonum.o cif_ctonum.c
cif_ctonum.c:198: warning: "_USE_RASMOL_H_" redefined
198 | #define _USE_RASMOL_H_
|
<command-line>: note: this is the location of the previous definition
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from cif_ctonum.c:200:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_stx.o cif_stx.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/stdio.h:27,
from cif_stx.c:227:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o multiple.o multiple.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from multiple.c:225:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o vector.o vector.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from vector.c:159:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o wbrotate.o wbrotate.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from rasmol.h:163,
from wbrotate.c:201:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o langsel_unix.o langsel_unix.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/stdio.h:27,
from langsel_unix.c:114:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
langsel_unix.c: In function 'SwitchLang':
langsel_unix.c:2347:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2347 | if (Interactive)
| ^~
langsel_unix.c:2349:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2349 | if (Language != lang) {
| ^~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o maps.o maps.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/stdio.h:27,
from maps.c:81:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
maps.c: In function 'SaveMapFile':
maps.c:429:55: warning: variable 'fcmapmask_zbase' set but not used [-Wunused-but-set-variable]
429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.;
| ^~~~~~~~~~~~~~~
maps.c:429:36: warning: variable 'fcmapmask_ybase' set but not used [-Wunused-but-set-variable]
429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.;
| ^~~~~~~~~~~~~~~
maps.c:429:16: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable]
429 | double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.;
| ^~~~~~~~~~~~~~~
maps.c:428:48: warning: variable 'fcmap_zbase' set but not used [-Wunused-but-set-variable]
428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.;
| ^~~~~~~~~~~
maps.c:428:32: warning: variable 'fcmap_ybase' set but not used [-Wunused-but-set-variable]
428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.;
| ^~~~~~~~~~~
maps.c:428:16: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable]
428 | double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.;
| ^~~~~~~~~~~
maps.c: In function 'LoadCBFMapFile':
maps.c:1940:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1940 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1940:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1940 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1945:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1945 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1945:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1945 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1950:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1950 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1950:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1950 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1955:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1955 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1955:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1955 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1966:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1966 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1966:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1966 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1976:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1976 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1976:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1976 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1981:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1981 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1981:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1981 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1986:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1986 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1986:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1986 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:1991:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
1991 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1991:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
1991 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:2001:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2001 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:2001:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2001 | if (mask) _ffree(mask); return CBF_FORMAT;
| ^~~~~~
maps.c:2023:11: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2023 | if (map) _ffree(map); if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:2023:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2023 | if (map) _ffree(map); if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:2093:11: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
2093 | if (map) _ffree(map); if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:2093:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
2093 | if (map) _ffree(map); if (mask) _ffree(mask); return CBF_FORMAT;
| ^~
maps.c:1758:12: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable]
1758 | double fcmapmask_xbase, fcmapmask_ybase, fcmapmask_zbase;
| ^~~~~~~~~~~~~~~
maps.c:1757:12: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable]
1757 | double fcmap_xbase, fcmap_ybase, fcmap_zbase;
| ^~~~~~~~~~~
maps.c:1756:12: warning: variable 'ocmapmask_xbase' set but not used [-Wunused-but-set-variable]
1756 | double ocmapmask_xbase, ocmapmask_ybase, ocmapmask_zbase;
| ^~~~~~~~~~~~~~~
maps.c:1755:12: warning: variable 'ocmap_xbase' set but not used [-Wunused-but-set-variable]
1755 | double ocmap_xbase, ocmap_ybase, ocmap_zbase;
| ^~~~~~~~~~~
maps.c:1754:12: warning: variable 'mapmask_xbase' set but not used [-Wunused-but-set-variable]
1754 | Long mapmask_xbase, mapmask_ybase, mapmask_zbase;
| ^~~~~~~~~~~~~
maps.c:1753:12: warning: variable 'map_xbase' set but not used [-Wunused-but-set-variable]
1753 | Long map_xbase, map_ybase, map_zbase;
| ^~~~~~~~~
maps.c: In function 'LoadCCP4MapFile':
maps.c:2988:9: warning: variable 'rawelsize' set but not used [-Wunused-but-set-variable]
2988 | int rawelsize;
| ^~~~~~~~~
In file included from maps.c:96:
maps.c: In function 'map_points':
maps.c:4575:42: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress]
4575 | MapPointm2o(map,mp,gradient);
| ^~~~~~~~
maps.h:187:10: note: in definition of macro 'MapPointm2o'
187 | if (gradient) { \
| ^~~~~~~~
maps.c:4598:44: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress]
4598 | MapPointm2o(map,mp,gradient);
| ^~~~~~~~
maps.h:187:10: note: in definition of macro 'MapPointm2o'
187 | if (gradient) { \
| ^~~~~~~~
maps.c:4399:12: warning: variable 'koffsets' set but not used [-Wunused-but-set-variable]
4399 | Long koffsets[3][2]; /* The offsets back to the prior cells */
| ^~~~~~~~
maps.c:4398:11: warning: variable 'odirs' set but not used [-Wunused-but-set-variable]
4398 | int odirs[3][2]; /* {Y,Z}, {Z,X}, {X,Y} */
| ^~~~~
maps.c:4396:39: warning: variable 'havebody' set but not used [-Wunused-but-set-variable]
4396 | int haveedges[3], havefaces[3], havebody;
| ^~~~~~~~
gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o x11win.o x11win.c
In file included from /usr/include/bits/libc-header-start.h:33,
from /usr/include/stdlib.h:26,
from x11win.c:232:
/usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
rm -f rasmol
gcc -m32 -o rasmol -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -L/usr/lib -L/usr/lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -lcbf -lCQRlib -lCVector -lCNearTree -lgfortran
make: Leaving directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src'
+ mv rasmol rasmol-32bpp
+ popd
~/RPM/BUILD/RasMol-2.7.5.2
+ exit 0
Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.611
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ /bin/chmod -Rf u+rwX -- /usr/src/tmp/RasMol-buildroot
+ :
+ /bin/rm -rf -- /usr/src/tmp/RasMol-buildroot
+ PATH=/usr/libexec/rpm-build:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games
+ cd RasMol-2.7.5.2
+ find -type f -name .DS_Store -execdir rm '{}' +
+ install -pDm755 /usr/src/RPM/SOURCES/rasmol.sh /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol
+ install -pm755 src/rasmol-8bpp /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol-8bpp
+ install -pm755 src/rasmol-16bpp /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol-16bpp
+ install -pm755 src/rasmol-32bpp /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol-32bpp
+ mkdir -p /usr/src/tmp/RasMol-buildroot/usr/share/RasMol /usr/src/tmp/RasMol-buildroot/usr/share/man/man1/
+ install -pm644 doc/rasmol.1.gz /usr/src/tmp/RasMol-buildroot/usr/share/man/man1/rasmol.1.gz
+ install -pm644 doc/rasmol.hlp /usr/src/tmp/RasMol-buildroot/usr/share/RasMol/rasmol.hlp
+ install -pm644 doc/rasmol.html /usr/src/tmp/RasMol-buildroot/usr/share/RasMol/rasmol.html
+ pushd doc
~/RPM/BUILD/RasMol-2.7.5.2/doc ~/RPM/BUILD/RasMol-2.7.5.2
+ rm rasmol.hlp rasmol.html rasmol.1.gz
+ mkdir doc
+ install -pm644 INSTALL.html NOTICE.html README.html esrasmol27.html esrasmol2721.html index.html manualA4.pdf.gz manualUS.pdf.gz refcardA4.pdf.gz refcardUS.pdf.gz manualA4.ps.gz manualUS.ps.gz refcardA4.ps.gz refcardUS.ps.gz manualA4.rtf.gz manualUS.rtf.gz raswin.rtf.gz refcardA4.rtf.gz refcardUS.rtf.gz rasmol.doc.gz doc/
+ mkdir examples
+ popd
~/RPM/BUILD/RasMol-2.7.5.2
+ mv data/1crn.pdb data/1gpd.pdb.gz data/1ldb.pdb.gz data/1ldm.pdb.gz data/3cro.pdb data/4hir.ent.gz data/4ins.CIF data/7lyz.pdb data/IUCR9800028.cif data/RSML_fixup.csh data/asprin.alc data/pdb2mcg.ent doc/examples/
+ install -pDm644 /usr/src/RPM/SOURCES/rasmol.xpm /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/32x32/apps/rasmol.xpm
+ install -pDm644 /usr/src/RPM/SOURCES/rasmol_16x14.png /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/16x16/apps/rasmol.png
+ install -pDm644 /usr/src/RPM/SOURCES/rasmol_32x29.png /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/32x32/apps/rasmol.png
+ install -pDm644 /usr/src/RPM/SOURCES/rasmol_64x58.png /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/64x64/apps/rasmol.png
+ install -pDm644 /usr/src/RPM/SOURCES/rasmol.desktop /usr/src/tmp/RasMol-buildroot/usr/share/applications/RasMol.desktop
+ /usr/lib/rpm/brp-alt
Cleaning files in /usr/src/tmp/RasMol-buildroot (auto)
Verifying and fixing files in /usr/src/tmp/RasMol-buildroot (binconfig,pkgconfig,libtool,desktop,gnuconfig)
Checking contents of files in /usr/src/tmp/RasMol-buildroot/ (default)
Compressing files in /usr/src/tmp/RasMol-buildroot (auto)
Verifying ELF objects in /usr/src/tmp/RasMol-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal)
Processing files: RasMol-2.7.5.2-alt5
Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.611
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd RasMol-2.7.5.2
+ DOCDIR=/usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2
+ export DOCDIR
+ rm -rf /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2
+ /bin/mkdir -p /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2
+ cp -prL doc/ /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2
+ chmod -R go-w /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2
+ chmod -R a+rX /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2
+ cp -prL NOTICE PROJECTS RASLIC README.html README.shtml README.txt INSTALL INSTALL.html TODO.html TODO.txt ChangeLog ChangeLog.html ChangeLog.txt history.html /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2
+ chmod -R go-w /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2
+ chmod -R a+rX /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2
+ exit 0
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.MEljkh
find-provides: running scripts (debuginfo,lib,pam,perl,pkgconfig,python,python3,shell)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.CT23h5
find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,python3,rpmlib,shebang,shell,static,symlinks,systemd-services)
Provides: rasmol = 2.7.5.2-alt5
Requires: fonts-bitmap-75dpi, xdpyinfo, /bin/sh, /lib/ld-linux.so.2, libCNearTree.so.7 >= set:jfy8eX61ZJ5rZ4xDtOoY3Ofm, libCQRlib.so.2 >= set:jhBWnjL0, libCVector-1.0.3.so.2 >= set:hfsOoCd, libX11.so.6 >= set:ohc6fbkxsesVSZD9TAWJZxFUMYKZF7XZFHoAwZoYIZ2TYjO5aoG8X4Ct9JQyRnIXmV2F0aHbK2ZEIMkiMh7yzkXHE6SFl6Ha4Znpd3lnVtPcXGZBdges21HaRZJR0gURRPSLYLM70RcAA80Vgr3LUciiZbdtHCjMHh3JmZsZmA0wfU8Z8CaFM9ckOPvlJQeQ8HE5AmdIcwyk5PhmNA2U1e, libXext.so.6 >= set:li6tHmY7qME5J7, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.15), libc.so.6(GLIBC_2.2), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.34), libc.so.6(GLIBC_2.4), libc.so.6(GLIBC_2.7), libcbf.so.0 >= set:nhij0GYBa6O0x4WIjboz5OU4ATPkFBqBcbzYg8P0ecxUzu3yNivD0dJUmrTQFZ7ZKL0g0Njm3mBpemz9qh1jta3BdIxPLMksDf0UwsKp15JkFisAQRQfEn, libm.so.6(GLIBC_2.0), libm.so.6(GLIBC_2.1), libm.so.6(GLIBC_2.29), rtld(GNU_HASH)
Requires(rpmlib): rpmlib(SetVersions)
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.HPSFik
Creating RasMol-debuginfo package
Processing files: RasMol-debuginfo-2.7.5.2-alt5
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.josxHM
find-provides: running scripts (debuginfo)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.9xt7ge
find-requires: running scripts (debuginfo)
Requires: RasMol = 2.7.5.2-alt5, /usr/lib/debug/lib/ld-linux.so.2.debug, debug(libCNearTree.so.7), debug(libCQRlib.so.2), debug(libCVector-1.0.3.so.2), debug(libX11.so.6), debug(libXext.so.6), debug(libc.so.6), debug(libcbf.so.0), debug(libm.so.6)
Adding to RasMol-debuginfo a strict dependency on RasMol
Wrote: /usr/src/RPM/RPMS/i586/RasMol-2.7.5.2-alt5.i586.rpm (w2T16.xzdio)
Wrote: /usr/src/RPM/RPMS/i586/RasMol-debuginfo-2.7.5.2-alt5.i586.rpm (w2.lzdio)
65.90user 4.61system 0:22.46elapsed 313%CPU (0avgtext+0avgdata 108008maxresident)k
0inputs+0outputs (0major+1467802minor)pagefaults 0swaps
/.out/RasMol-2.7.5.2-alt5.i586.rpm: license not found in '/usr/share/license' directory: GPL-like
/.out/RasMol-debuginfo-2.7.5.2-alt5.i586.rpm: license not found in '/usr/share/license' directory: GPL-like
69.86user 7.56system 0:28.68elapsed 269%CPU (0avgtext+0avgdata 108008maxresident)k
2440inputs+0outputs (30323major+1739667minor)pagefaults 0swaps
--- RasMol-2.7.5.2-alt5.i586.rpm.repo 2019-06-16 14:28:06.000000000 +0000
+++ RasMol-2.7.5.2-alt5.i586.rpm.hasher 2022-05-21 04:23:53.943299588 +0000
@@ -135,2 +135,3 @@
Requires: libc.so.6(GLIBC_2.1)
+Requires: libc.so.6(GLIBC_2.1.3)
Requires: libc.so.6(GLIBC_2.15)
@@ -139,2 +140,3 @@
Requires: libc.so.6(GLIBC_2.3.4)
+Requires: libc.so.6(GLIBC_2.34)
Requires: libc.so.6(GLIBC_2.4)
@@ -144,2 +146,3 @@
Requires: libm.so.6(GLIBC_2.1)
+Requires: libm.so.6(GLIBC_2.29)
Requires: rtld(GNU_HASH)
@@ -149,5 +152,5 @@
File: /usr/bin/rasmol 100755 root:root 0a6fbafc8996fc169efab77b707322a4
-File: /usr/bin/rasmol-16bpp 100755 root:root 87ce13189cc846543ac061e546ef44eb
-File: /usr/bin/rasmol-32bpp 100755 root:root a2e3a6d94bd15a9350a9d0504ce2b383
-File: /usr/bin/rasmol-8bpp 100755 root:root bdaca09ba2a2eb809232e2550b7cfeb8
+File: /usr/bin/rasmol-16bpp 100755 root:root 3961ee4dae40b0aa702b61d8346c7033
+File: /usr/bin/rasmol-32bpp 100755 root:root 0fefb88ea991fd47f944a26dd7becdef
+File: /usr/bin/rasmol-8bpp 100755 root:root b8e0ed0859a4d94a164f9333f981b473
File: /usr/share/RasMol 40755 root:root
@@ -271,2 +274,2 @@
File: /usr/share/man/man1/rasmol.1.xz 100644 root:root 9b73f54ed473f9c627909b8ca5350c71
-RPMIdentity: 231b64eb4d55c8e1bb5dc67277df4b3a2c3007d80091beb7bbafeeae382878a29e8cc9815026262cd3d7585201d985b91f2abd3d271977255905ba29eb28b550
+RPMIdentity: 05dd1e20aa4b4deded3d1dc0a672aaa49c66b666fb0939e3c98588f8cc61826c62e07aaafffbd842a75080e70c1623dc82b2bf4a1a3ecbc70a6788356315ec7b
--- RasMol-debuginfo-2.7.5.2-alt5.i586.rpm.repo 2019-06-16 14:28:06.000000000 +0000
+++ RasMol-debuginfo-2.7.5.2-alt5.i586.rpm.hasher 2022-05-21 04:23:54.008300291 +0000
@@ -1,10 +1,10 @@
-/usr/lib/debug/.build-id/01 40755 root:root
-/usr/lib/debug/.build-id/01/ec7bacd508fd4a7d34a9399805a016d85a1c54 120777 root:root ../../../../bin/rasmol-16bpp
-/usr/lib/debug/.build-id/01/ec7bacd508fd4a7d34a9399805a016d85a1c54.debug 120777 root:root ../../usr/bin/rasmol-16bpp.debug
-/usr/lib/debug/.build-id/34 40755 root:root
-/usr/lib/debug/.build-id/34/41844972b90950ee42aea5c77b4c9fbeb82e65 120777 root:root ../../../../bin/rasmol-8bpp
-/usr/lib/debug/.build-id/34/41844972b90950ee42aea5c77b4c9fbeb82e65.debug 120777 root:root ../../usr/bin/rasmol-8bpp.debug
-/usr/lib/debug/.build-id/f0 40755 root:root
-/usr/lib/debug/.build-id/f0/d5794ed689953aadb629067b17a40a82b73dcf 120777 root:root ../../../../bin/rasmol-32bpp
-/usr/lib/debug/.build-id/f0/d5794ed689953aadb629067b17a40a82b73dcf.debug 120777 root:root ../../usr/bin/rasmol-32bpp.debug
+/usr/lib/debug/.build-id/50 40755 root:root
+/usr/lib/debug/.build-id/50/fdcd6feeb7b8abc36c75e9fea85c808c47277b 120777 root:root ../../../../bin/rasmol-16bpp
+/usr/lib/debug/.build-id/50/fdcd6feeb7b8abc36c75e9fea85c808c47277b.debug 120777 root:root ../../usr/bin/rasmol-16bpp.debug
+/usr/lib/debug/.build-id/a5 40755 root:root
+/usr/lib/debug/.build-id/a5/b941d81b5fe123998df490f92b10a064f6a6da 120777 root:root ../../../../bin/rasmol-32bpp
+/usr/lib/debug/.build-id/a5/b941d81b5fe123998df490f92b10a064f6a6da.debug 120777 root:root ../../usr/bin/rasmol-32bpp.debug
+/usr/lib/debug/.build-id/c5 40755 root:root
+/usr/lib/debug/.build-id/c5/81819bd6e024ab9b7fc51a20c4cc106dbe9bab 120777 root:root ../../../../bin/rasmol-8bpp
+/usr/lib/debug/.build-id/c5/81819bd6e024ab9b7fc51a20c4cc106dbe9bab.debug 120777 root:root ../../usr/bin/rasmol-8bpp.debug
/usr/lib/debug/usr/bin/rasmol-16bpp.debug 100644 root:root
@@ -23,2 +23,3 @@
/usr/src/debug/RasMol-2.7.5.2/src/cif_fract.h 100644 root:root
+/usr/src/debug/RasMol-2.7.5.2/src/cif_stx.c 100644 root:root
/usr/src/debug/RasMol-2.7.5.2/src/cmndline.c 100644 root:root
@@ -72,14 +73,14 @@
Provides: RasMol-debuginfo = 2.7.5.2-alt5:sisyphus+232283.100.1.1
-File: /usr/lib/debug/.build-id/01 40755 root:root
-File: /usr/lib/debug/.build-id/01/ec7bacd508fd4a7d34a9399805a016d85a1c54 120777 root:root ../../../../bin/rasmol-16bpp
-File: /usr/lib/debug/.build-id/01/ec7bacd508fd4a7d34a9399805a016d85a1c54.debug 120777 root:root ../../usr/bin/rasmol-16bpp.debug
-File: /usr/lib/debug/.build-id/34 40755 root:root
-File: /usr/lib/debug/.build-id/34/41844972b90950ee42aea5c77b4c9fbeb82e65 120777 root:root ../../../../bin/rasmol-8bpp
-File: /usr/lib/debug/.build-id/34/41844972b90950ee42aea5c77b4c9fbeb82e65.debug 120777 root:root ../../usr/bin/rasmol-8bpp.debug
-File: /usr/lib/debug/.build-id/f0 40755 root:root
-File: /usr/lib/debug/.build-id/f0/d5794ed689953aadb629067b17a40a82b73dcf 120777 root:root ../../../../bin/rasmol-32bpp
-File: /usr/lib/debug/.build-id/f0/d5794ed689953aadb629067b17a40a82b73dcf.debug 120777 root:root ../../usr/bin/rasmol-32bpp.debug
-File: /usr/lib/debug/usr/bin/rasmol-16bpp.debug 100644 root:root 31ea59b96ed6486eac7fef9b93632d42
-File: /usr/lib/debug/usr/bin/rasmol-32bpp.debug 100644 root:root 8b77c6a0e81f9cd172058bd6db8ef4fb
-File: /usr/lib/debug/usr/bin/rasmol-8bpp.debug 100644 root:root d7c34e2930c0184487eb35b92b880db4
+File: /usr/lib/debug/.build-id/50 40755 root:root
+File: /usr/lib/debug/.build-id/50/fdcd6feeb7b8abc36c75e9fea85c808c47277b 120777 root:root ../../../../bin/rasmol-16bpp
+File: /usr/lib/debug/.build-id/50/fdcd6feeb7b8abc36c75e9fea85c808c47277b.debug 120777 root:root ../../usr/bin/rasmol-16bpp.debug
+File: /usr/lib/debug/.build-id/a5 40755 root:root
+File: /usr/lib/debug/.build-id/a5/b941d81b5fe123998df490f92b10a064f6a6da 120777 root:root ../../../../bin/rasmol-32bpp
+File: /usr/lib/debug/.build-id/a5/b941d81b5fe123998df490f92b10a064f6a6da.debug 120777 root:root ../../usr/bin/rasmol-32bpp.debug
+File: /usr/lib/debug/.build-id/c5 40755 root:root
+File: /usr/lib/debug/.build-id/c5/81819bd6e024ab9b7fc51a20c4cc106dbe9bab 120777 root:root ../../../../bin/rasmol-8bpp
+File: /usr/lib/debug/.build-id/c5/81819bd6e024ab9b7fc51a20c4cc106dbe9bab.debug 120777 root:root ../../usr/bin/rasmol-8bpp.debug
+File: /usr/lib/debug/usr/bin/rasmol-16bpp.debug 100644 root:root 1524e955616ee72c763436c72b212d87
+File: /usr/lib/debug/usr/bin/rasmol-32bpp.debug 100644 root:root 15fd916b6700f48ee755c8944b5c06db
+File: /usr/lib/debug/usr/bin/rasmol-8bpp.debug 100644 root:root 3700b287a86183ef0cebc11105f4afd2
File: /usr/src/debug/RasMol-2.7.5.2 40755 root:root
@@ -95,2 +96,3 @@
File: /usr/src/debug/RasMol-2.7.5.2/src/cif_fract.h 100644 root:root 597ec5b57ba4330a12f9d03c2f9dc343
+File: /usr/src/debug/RasMol-2.7.5.2/src/cif_stx.c 100644 root:root 2a7952e07a9b5d25351bbede44caf2a2
File: /usr/src/debug/RasMol-2.7.5.2/src/cmndline.c 100644 root:root ec86687a24dfd83eb2fece88492fc0cd
@@ -132,2 +134,2 @@
File: /usr/src/debug/RasMol-2.7.5.2/src/x11win.c 100644 root:root fe73aee774eb9a8e580f750f8ea46832
-RPMIdentity: ea371d726271d98f8a5ab89f61e60f345613b3ca02fd90e8bcc23e482f3d1835ec23443e97809b9c485a258f8ff5b45ffcca60ddec1b5677b6b4a0c5d53b7166
+RPMIdentity: fa620ac2cfac6f8ca1b391ebc49c68737a55b639bfc4850df4de40853b4c4a6187b1bb3d0bc4210b9099e6fe39d6b36c82fee28bdb3296dd871d9f21ba1d943f